Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
PARVB_chr22_44019302_44177939	44122526	GACAGAGA others(23): Show GACAGAGAGAGAGAGAGAGAGAGAGAGACAC	G G	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0186 a0001c0001t0042g0186	1	332	0.0030	-30	c.376 others(47): Show c.376+3388_376+3417delCAGAGAGAGAGAGAGAGAGAGAGAGACA CA		PARVB	ENSG00000188677.15	transcript	ENST00000338758.12	protein_coding	4/12					INFO_REALIGN_3_PRIME	chr22	TogoVar
PATJ_chr1_61737480_62168915	61813356	TATATATA others(23): Show TATATATATATATATATATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0104 a0001c0104	a0001c0104t0014 a0001c0104t0014	a0001c0104t0014g0114 a0001c0104t0014g0114	1	158	0.0063	-30	c.168 others(49): Show c.1683+4828_1683+4857delTATATATATATATATATATATACACA CACA		PATJ	ENSG00000132849.22	transcript	ENST00000642238.2	protein_coding	14/43					INFO_REALIGN_3_PRIME	chr1	TogoVar
PATJ_chr1_61737480_62168915	62127046	TGTTTATT others(23): Show TGTTTATTCAGGAATGGGAATATGCGGGCCA	T T	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01074.hp2 HG02040.hp1 others(13): Show HG01070.hp1 HG01074.hp2 HG02040.hp1 HG02145.hp1 HG02523.hp1 HG02559.hp1 HG02622.hp1 HG02647.hp2 HG02717.hp2 HG02809.hp2 HG03453.hp2 HG03516.hp1 HG06807.hp1 HG06807.hp2 NA19030.hp2 NA19056.hp1	a0001 a0003 a0006 others(7): Show a0001 a0003 a0006 a0016 a0017 a0020 a0028 a0029 a0034 a0050	a0001c0008 a0001c0024 a0001c0026 others(12): Show a0001c0008 a0001c0024 a0001c0026 a0001c0046 a0001c0104 a0003c0009 a0006c0040 a0006c0068 a0016c0036 a0017c0033 a0020c0127 a0028c0136 a0029c0133 a0034c0090 a0050c0044	a0001c0008t0016 a0001c0024t0001 a0001c0026t0001 others(12): Show a0001c0008t0016 a0001c0024t0001 a0001c0026t0001 a0001c0046t0016 a0001c0104t0014 a0003c0009t0011 a0006c0040t0023 a0006c0068t0011 a0016c0036t0028 a0017c0033t0006 a0020c0127t0008 a0028c0136t0013 a0029c0133t0014 a0034c0090t0008 a0050c0044t0006	a0001c0008t0016g0047 a0001c0024t0001g0139 a0001c0026t0001g0116 others(13): Show a0001c0008t0016g0047 a0001c0024t0001g0139 a0001c0026t0001g0116 a0001c0046t0016g0106 a0001c0104t0014g0114 a0003c0009t0011g0038 a0003c0009t0011g0065 a0006c0040t0023g0123 a0006c0068t0011g0097 a0016c0036t0028g0145 a0017c0033t0006g0120 a0020c0127t0008g0024 a0028c0136t0013g0099 a0029c0133t0014g0101 a0034c0090t0008g0018 a0050c0044t0006g0071	16	158	0.1013	-30	c.504 others(47): Show c.5044-895_5044-866delGTTTATTCAGGAATGGGAATATGCGGGC CA		PATJ	ENSG00000132849.22	transcript	ENST00000642238.2	protein_coding	39/43					INFO_REALIGN_3_PRIME	chr1	TogoVar
PAWR_chr12_79579879_79695964	79613959	ATATATAT others(23): Show ATATATATATATATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0047 a0001c0001t0002g0047	1	256	0.0039	-30	c.649 others(45): Show c.649-380_649-351delAAAAAAAAAATATATATATATATATATATA		PAWR	ENSG00000177425.11	transcript	ENST00000328827.9	protein_coding	3/6						chr12	TogoVar
PAWR_chr12_79579879_79695964	79632288	AATATATA others(23): Show AATATATACATATATATATACATACATATAT	A A	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0007 a0003c0004t0007	a0003c0004t0007g0167 a0003c0004t0007g0167	1	256	0.0039	-30	c.517 others(49): Show c.517-11111_517-11082delATATATGTATGTATATATATATGTAT ATAT		PAWR	ENSG00000177425.11	transcript	ENST00000328827.9	protein_coding	2/6						chr12	TogoVar
PAX5_chr9_36828269_37039268	36973105	GAAAGGAA others(23): Show GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01167.hp1 HG01175.hp2 others(17): Show HG00099.hp2 HG01167.hp1 HG01175.hp2 HG01978.hp2 HG02257.hp1 HG02717.hp1 HG02922.hp2 HG03710.hp2 HG06807.hp2 NA18747.hp1 NA18943.hp1 NA18986.hp1 NA18990.hp1 NA19005.hp2 NA19007.hp2 NA19056.hp2 NA19063.hp1 NA19064.hp2 NA19077.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0003c0003	a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 others(13): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 a0001c0001t0013 a0001c0001t0031 a0001c0001t0034 a0001c0001t0049 a0001c0001t0094 a0001c0001t0101 a0001c0001t0122 a0001c0002t0016 a0001c0002t0027 a0001c0002t0095 a0001c0002t0110 a0001c0009t0001 a0003c0003t0001	a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0107 others(17): Show a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0142 a0001c0001t0007g0129 a0001c0001t0010g0040 a0001c0001t0013g0135 a0001c0001t0031g0208 a0001c0001t0034g0162 a0001c0001t0049g0011 a0001c0001t0094g0190 a0001c0001t0101g0226 a0001c0001t0122g0274 a0001c0002t0016g0098 a0001c0002t0027g0256 a0001c0002t0095g0197 a0001c0002t0110g0080 a0001c0009t0001g0141 a0003c0003t0001g0076 a0003c0003t0001g0077	20	274	0.0730	-30	c.605 others(47): Show c.605-6411_605-6382delTCTTTCCTTTCCTTTCCTTTCCTTTCCT TT		PAX5	ENSG00000196092.14	transcript	ENST00000358127.9	protein_coding	5/9						chr9	TogoVar
PAX7_chr1_18625846_18753866	18681691	ATTTATTT others(23): Show ATTTATTTTATTTTATTTTATTTTATTTTAT	A A	intron_variant intron_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0152 a0001c0002t0001g0152	1	302	0.0033	-30	c.587 others(49): Show c.587-10029_587-10000delATTTTATTTTATTTTATTTTATTTTA TTTT		PAX7	ENSG00000009709.12	transcript	ENST00000420770.7	protein_coding	4/8					INFO_REALIGN_3_PRIME	chr1	TogoVar
PAXBP1_chr21_32728899_32776755	32771943	AGAGAGCG others(23): Show AGAGAGCGAGAGAGAGAGAGAGAGAGAGAGC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0058 a0001c0001t0001g0058	1	360	0.0028	-30	c.-30 others(39): Show c.-305_-276delGCTCTCTCTCTCTCTCTCTCTCTCGCTCTC		PAXBP1	ENSG00000159086.15	transcript	ENST00000331923.9	protein_coding					189		chr21	TogoVar
PBRM1_chr3_52540367_52690913	52571094	GCAGGCGC others(23): Show GCAGGCGCCTCACGAGGTCAAGAGATTGAGA	G G	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02622.hp2 HG02647.hp2 others(18): Show HG02280.hp1 HG02622.hp2 HG02647.hp2 HG02717.hp2 HG02809.hp2 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02965.hp2 HG03041.hp1 HG03130.hp2 HG03139.hp2 HG03225.hp1 HG03471.hp1 HG03540.hp2 HG03579.hp2 NA19030.hp2 NA19043.hp2 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0004 a0001c0004t0001 a0001c0004t0004	a0001c0004t0001g0270 a0001c0004t0001g0271 a0001c0004t0001g0273 others(18): Show a0001c0004t0001g0270 a0001c0004t0001g0271 a0001c0004t0001g0273 a0001c0004t0001g0274 a0001c0004t0001g0275 a0001c0004t0001g0276 a0001c0004t0001g0277 a0001c0004t0001g0279 a0001c0004t0001g0280 a0001c0004t0001g0281 a0001c0004t0001g0282 a0001c0004t0001g0283 a0001c0004t0001g0286 a0001c0004t0001g0292 a0001c0004t0001g0293 a0001c0004t0001g0294 a0001c0004t0004g0269 a0001c0004t0004g0272 a0001c0004t0004g0278 a0001c0004t0004g0284 a0001c0004t0004g0285	21	300	0.0700	-30	c.373 others(49): Show c.3736+5417_3736+5446delTCTCAATCTCTTGACCTCGTGAGGCG CCTG		PBRM1	ENSG00000163939.19	transcript	ENST00000707071.1	protein_coding	24/31						chr3	TogoVar
PBX1_chr1_164554184_164856831	164771960	TTGTAAGG others(23): Show TTGTAAGGGAAGATAGAGCTGAATTCAAGTG	T T	intron_variant intron_variant	MODIFIER	NA19085.hp2 NA19085.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0042 a0002c0002t0001g0042	1	184	0.0054	-30	c.266 others(49): Show c.266-20531_266-20502delTAAGGGAAGATAGAGCTGAATTCAAG TGTG		PBX1	ENSG00000185630.20	transcript	ENST00000420696.7	protein_coding	2/8					INFO_REALIGN_3_PRIME	chr1	TogoVar
PBX3_chr9_125742373_125972377	125899203	TTATAAAT others(23): Show TTATAAATATACATATGTATATATATTTATA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(118): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00438.hp2 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01099.hp1 HG01109.hp2 HG01168.hp1 HG01192.hp2 HG01243.hp2 HG01258.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01517.hp1 HG01891.hp2 HG01943.hp2 HG01952.hp2 HG01981.hp1 HG01993.hp1 HG02040.hp2 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp2 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02886.hp1 HG02922.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03209.hp2 HG03239.hp2 HG03471.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp2 HG03710.hp1 HG03927.hp1 HG04199.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp2 NA18939.hp2 NA18942.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp2 NA18962.hp1 NA18963.hp2 NA18964.hp1 NA18965.hp2 NA18967.hp1 NA18969.hp2 NA18970.hp2 NA18971.hp2 NA18978.hp2 NA18979.hp1 NA18980.hp2 NA18981.hp1 NA18983.hp2 NA18985.hp1 NA18988.hp1 NA18989.hp2 NA18991.hp1 NA18993.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19007.hp1 NA19011.hp1 NA19012.hp2 NA19056.hp2 NA19057.hp1 NA19060.hp1 NA19066.hp2 NA19068.hp1 NA19079.hp2 NA19080.hp2 NA19085.hp1 NA19090.hp1 NA19091.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0001c0001 a0002c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0017 a0002c0005t0002	a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 others(118): Show a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0274 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0028 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0036 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0053 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0084 a0001c0001t0002g0093 a0001c0001t0002g0094 a0001c0001t0002g0095 a0001c0001t0002g0112 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0002g0115 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0172 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0003g0002 a0001c0001t0003g0026 a0001c0001t0003g0030 a0001c0001t0003g0055 a0001c0001t0003g0061 a0001c0001t0003g0063 a0001c0001t0003g0070 a0001c0001t0003g0091 a0001c0001t0003g0092 a0001c0001t0003g0100 a0001c0001t0003g0102 a0001c0001t0003g0103 a0001c0001t0003g0104 a0001c0001t0003g0105 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0108 a0001c0001t0003g0110 a0001c0001t0003g0117 a0001c0001t0003g0119 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0129 a0001c0001t0003g0171 a0001c0001t0003g0173 a0001c0001t0005g0029 a0001c0001t0005g0056 a0001c0001t0005g0286 a0001c0001t0007g0090 a0001c0001t0007g0096 a0001c0001t0007g0097 a0001c0001t0007g0098 a0001c0001t0007g0099 a0001c0001t0007g0130 a0001c0001t0008g0035 a0001c0001t0008g0043 a0001c0001t0008g0054 a0001c0001t0008g0089 a0001c0001t0008g0109 a0001c0001t0008g0116 a0001c0001t0011g0284 a0001c0001t0011g0285 a0001c0001t0011g0290 a0001c0001t0017g0111 a0002c0005t0002g0037	121	294	0.4116	-30	c.275 others(49): Show c.275-16407_275-16378delGTATATATATTTATATATAAATATAC ATAT		PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8					INFO_REALIGN_3_PRIME	chr9	TogoVar
PBX3_chr9_125742373_125972377	125943352	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02895.hp1 HG02818.hp2 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0004 a0001c0001t0005g0005 a0001c0001t0005g0004 a0001c0001t0005g0005	2	294	0.0068	-30	c.843 others(47): Show c.843+7763_843+7792delAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA		PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	5/8					INFO_REALIGN_3_PRIME	chr9	TogoVar
PCCA_chr13_100084093_100535435	100440156	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG02735.hp1 HG03834.hp1 others(5): Show HG00408.hp2 HG02735.hp1 HG03834.hp1 NA18945.hp2 NA18968.hp1 NA19064.hp2 NA19081.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0010 others(5): Show a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0070 a0001c0001t0001g0139 a0001c0001t0005g0030	8	174	0.0460	-30	c.184 others(49): Show c.1846-9071_1846-9042delTATATATATATATATATATATATATA TATA		PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	20/23					INFO_REALIGN_3_PRIME	chr13	TogoVar
PCDH11X_chrX_91774375_92628230	92132645	ATATATAT others(23): Show ATATATATATATGTATATATATATGTATATG	A A	intron_variant intron_variant	MODIFIER	HG03130.hp1 NA18949.hp1 NA19083.hp1 HG03130.hp1 NA18949.hp1 NA19083.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0002 a0001c0001t0007 a0003c0005t0001 a0001c0001t0002 a0001c0001t0007 a0003c0005t0001	a0001c0001t0002g0076 a0001c0001t0007g0037 a0003c0005t0001g0025 a0001c0001t0002g0076 a0001c0001t0007g0037 a0003c0005t0001g0025	3	154	0.0195	-30	c.303 others(51): Show c.3034-68706_3034-68677delGTATATGTATATATATATGTATAT ATATAT		PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10					INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92499636	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0046 a0001c0001t0006g0046	1	154	0.0065	-30	c.336 others(51): Show c.3367+31330_3367+31359delAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA		PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	10/10					INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92575916	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0013 a0001c0001t0023g0013	1	154	0.0065	-30	c.336 others(51): Show c.3368-42346_3368-42317delTATATATATATATATATATATATA TATACA		PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	10/10					INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH15_chr10_53797771_54806231	53851671	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0033 a0033	a0033c0023 a0033c0023	a0033c0023t0026 a0033c0023t0026	a0033c0023t0026g0082 a0033c0023t0026g0082	1	102	0.0098	-30	c.380 others(49): Show c.3806+5474_3806+5503delATATATATATATATATATATATATAT ATAT		PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	28/37						chr10	TogoVar
PCDH15_chr10_53797771_54806231	54761683	AAAAACAA others(23): Show AAAAACAAAACAAAACAAAACAAAACAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG00735.hp2 others(62): Show HG00642.hp1 HG00642.hp2 HG00735.hp2 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01081.hp2 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01261.hp1 HG01261.hp2 HG01934.hp1 HG01981.hp1 HG01981.hp2 HG02027.hp1 HG02027.hp2 HG02109.hp2 HG02145.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03471.hp1 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03942.hp2 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18945.hp2 NA19043.hp1 NA19043.hp2 NA19088.hp1 NA19088.hp2 NA20129.hp1 NA20129.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(23): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012 a0013 a0017 a0018 a0020 a0021 a0023 a0027 a0028 a0029 a0030 a0031 a0033 a0034 a0037	a0001c0001 a0002c0002 a0002c0021 others(27): Show a0001c0001 a0002c0002 a0002c0021 a0002c0039 a0003c0003 a0004c0004 a0005c0005 a0005c0040 a0006c0006 a0007c0007 a0008c0010 a0008c0032 a0009c0008 a0010c0009 a0011c0017 a0012c0016 a0013c0015 a0017c0011 a0018c0037 a0020c0027 a0021c0026 a0023c0041 a0027c0031 a0028c0034 a0029c0035 a0030c0036 a0031c0020 a0033c0023 a0034c0022 a0037c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(52): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0014 a0001c0001t0020 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0005 a0002c0002t0007 a0002c0002t0009 a0002c0002t0023 a0002c0002t0024 a0002c0002t0027 a0002c0021t0021 a0002c0039t0001 a0003c0003t0001 a0003c0003t0002 a0003c0003t0003 a0003c0003t0006 a0003c0003t0009 a0004c0004t0001 a0004c0004t0002 a0004c0004t0005 a0004c0004t0006 a0005c0005t0002 a0005c0005t0005 a0005c0040t0001 a0006c0006t0002 a0006c0006t0005 a0006c0006t0006 a0006c0006t0010 a0007c0007t0022 a0008c0010t0001 a0008c0032t0001 a0009c0008t0001 a0009c0008t0002 a0010c0009t0011 a0010c0009t0012 a0011c0017t0002 a0012c0016t0001 a0013c0015t0001 a0017c0011t0012 a0018c0037t0013 a0020c0027t0001 a0021c0026t0008 a0023c0041t0006 a0027c0031t0010 a0028c0034t0013 a0029c0035t0005 a0030c0036t0004 a0031c0020t0007 a0033c0023t0026 a0034c0022t0001 a0037c0018t0001	a0001c0001t0001g0022 a0001c0001t0001g0043 a0001c0001t0001g0044 others(62): Show a0001c0001t0001g0022 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0002g0070 a0001c0001t0004g0031 a0001c0001t0014g0067 a0001c0001t0014g0074 a0001c0001t0020g0095 a0002c0002t0001g0093 a0002c0002t0002g0037 a0002c0002t0002g0063 a0002c0002t0004g0041 a0002c0002t0004g0077 a0002c0002t0005g0016 a0002c0002t0007g0038 a0002c0002t0009g0027 a0002c0002t0023g0034 a0002c0002t0024g0069 a0002c0002t0027g0064 a0002c0021t0021g0047 a0002c0039t0001g0073 a0003c0003t0001g0017 a0003c0003t0001g0084 a0003c0003t0002g0020 a0003c0003t0003g0056 a0003c0003t0003g0092 a0003c0003t0006g0051 a0003c0003t0009g0018 a0004c0004t0001g0045 a0004c0004t0001g0059 a0004c0004t0002g0096 a0004c0004t0005g0024 a0004c0004t0005g0025 a0004c0004t0006g0026 a0005c0005t0002g0094 a0005c0005t0005g0036 a0005c0040t0001g0071 a0006c0006t0002g0050 a0006c0006t0005g0055 a0006c0006t0006g0046 a0006c0006t0010g0030 a0007c0007t0022g0075 a0008c0010t0001g0068 a0008c0010t0001g0091 a0008c0032t0001g0021 a0009c0008t0001g0048 a0009c0008t0002g0049 a0010c0009t0011g0078 a0010c0009t0012g0042 a0011c0017t0002g0072 a0012c0016t0001g0028 a0013c0015t0001g0029 a0017c0011t0012g0086 a0018c0037t0013g0062 a0020c0027t0001g0080 a0021c0026t0008g0081 a0023c0041t0006g0052 a0027c0031t0010g0066 a0028c0034t0013g0058 a0029c0035t0005g0100 a0030c0036t0004g0061 a0031c0020t0007g0083 a0033c0023t0026g0082 a0034c0022t0001g0054 a0037c0018t0001g0004	65	102	0.6373	-30	c.-29 others(49): Show c.-29+39212_-29+39241delGTTTTGTTTTGTTTTGTTTTGTTTTG TTTT		PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	1/37						chr10	TogoVar
PCDH15_chr10_53816099_54806231	53851671	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0005 a0002c0006t0005	a0002c0006t0005g0074 a0002c0006t0005g0074	1	94	0.0106	-30	c.380 others(49): Show c.3806+5474_3806+5503delATATATATATATATATATATATATAT ATAT		PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	28/32						chr10	TogoVar
PCDH15_chr10_53816099_54806231	54761683	AAAAACAA others(23): Show AAAAACAAAACAAAACAAAACAAAACAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG00735.hp2 others(56): Show HG00642.hp1 HG00642.hp2 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01081.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01261.hp1 HG01261.hp2 HG01934.hp1 HG01981.hp1 HG01981.hp2 HG02027.hp1 HG02027.hp2 HG02145.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02922.hp2 HG02965.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03471.hp1 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03942.hp2 HG04184.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18945.hp2 NA19043.hp1 NA19043.hp2 NA19088.hp1 NA19088.hp2 NA20129.hp1 NA20129.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(19): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0009 a0010 a0011 a0012 a0013 a0015 a0016 a0017 a0019 a0024 a0025 a0027 a0029 a0030 a0033	a0001c0001 a0001c0007 a0002c0002 others(31): Show a0001c0001 a0001c0007 a0002c0002 a0002c0006 a0002c0029 a0002c0045 a0003c0003 a0003c0005 a0003c0024 a0003c0025 a0004c0004 a0004c0044 a0005c0009 a0005c0035 a0005c0046 a0006c0008 a0006c0042 a0007c0018 a0007c0019 a0009c0014 a0010c0010 a0011c0021 a0012c0020 a0013c0017 a0015c0011 a0016c0043 a0017c0033 a0019c0047 a0024c0040 a0025c0041 a0027c0027 a0029c0030 a0030c0028 a0033c0022	a0001c0001t0001 a0001c0001t0002 a0001c0007t0001 others(36): Show a0001c0001t0001 a0001c0001t0002 a0001c0007t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0009 a0002c0002t0010 a0002c0006t0001 a0002c0006t0005 a0002c0029t0001 a0002c0045t0001 a0003c0003t0001 a0003c0005t0001 a0003c0024t0001 a0003c0025t0001 a0004c0004t0001 a0004c0044t0001 a0005c0009t0001 a0005c0035t0001 a0005c0046t0001 a0006c0008t0001 a0006c0042t0001 a0007c0018t0001 a0007c0019t0001 a0009c0014t0001 a0010c0010t0003 a0011c0021t0001 a0012c0020t0001 a0013c0017t0001 a0015c0011t0001 a0016c0043t0004 a0017c0033t0001 a0019c0047t0001 a0024c0040t0001 a0025c0041t0002 a0027c0027t0008 a0029c0030t0001 a0030c0028t0001 a0033c0022t0001	a0001c0001t0001g0021 a0001c0001t0001g0040 a0001c0001t0001g0041 others(56): Show a0001c0001t0001g0021 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0083 a0001c0001t0002g0028 a0001c0007t0001g0087 a0002c0002t0001g0034 a0002c0002t0001g0052 a0002c0002t0001g0063 a0002c0002t0001g0085 a0002c0002t0002g0038 a0002c0002t0002g0071 a0002c0002t0009g0031 a0002c0002t0010g0060 a0002c0006t0001g0016 a0002c0006t0001g0059 a0002c0006t0005g0074 a0002c0029t0001g0024 a0002c0045t0001g0067 a0003c0003t0001g0017 a0003c0003t0001g0054 a0003c0003t0001g0084 a0003c0005t0001g0020 a0003c0005t0001g0075 a0003c0005t0001g0076 a0003c0024t0001g0049 a0003c0025t0001g0018 a0004c0004t0001g0022 a0004c0004t0001g0023 a0004c0004t0001g0042 a0004c0004t0001g0055 a0004c0044t0001g0088 a0005c0009t0001g0033 a0005c0035t0001g0086 a0005c0046t0001g0065 a0006c0008t0001g0027 a0006c0008t0001g0043 a0006c0008t0001g0053 a0006c0042t0001g0047 a0007c0018t0001g0046 a0007c0019t0001g0045 a0009c0014t0001g0069 a0010c0010t0003g0061 a0010c0010t0003g0068 a0011c0021t0001g0066 a0012c0020t0001g0025 a0013c0017t0001g0026 a0015c0011t0001g0078 a0016c0043t0004g0058 a0017c0033t0001g0073 a0019c0047t0001g0050 a0024c0040t0001g0092 a0025c0041t0002g0057 a0027c0027t0008g0039 a0029c0030t0001g0035 a0030c0028t0001g0044 a0033c0022t0001g0004	59	94	0.6277	-30	c.-29 others(49): Show c.-29+39212_-29+39241delGTTTTGTTTTGTTTTGTTTTGTTTTG TTTT		PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	1/32						chr10	TogoVar
PCDH18_chr4_137513918_137537494	137517489	ATTTATTT others(23): Show ATTTATTTTATTTTATTTTATTTTATTTTAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0031 a0001c0006t0031	a0001c0006t0031g0117 a0001c0006t0031g0117	1	406	0.0025	-30	c.35 others(41): Show c.3510_*3539delATAAAATAAAATAAAATAAAATAAAATAAA		PCDH18	ENSG00000189184.12	transcript	ENST00000344876.9	protein_coding					1428		chr4	TogoVar
PCDH9_chr13_66297834_67235336	66594468	GTTTATTT others(23): Show GTTTATTTTATTTTATTTTATTTTATTTTAT	G G	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02145.hp1 HG02622.hp2 others(4): Show HG01884.hp2 HG02145.hp1 HG02622.hp2 HG03209.hp1 HG03471.hp1 HG03579.hp1 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0002c0005	a0001c0001t0003 a0001c0001t0012 a0001c0003t0005 others(4): Show a0001c0001t0003 a0001c0001t0012 a0001c0003t0005 a0001c0004t0001 a0001c0004t0006 a0001c0004t0011 a0002c0005t0002	a0001c0001t0003g0062 a0001c0001t0012g0058 a0001c0003t0005g0036 others(4): Show a0001c0001t0003g0062 a0001c0001t0012g0058 a0001c0003t0005g0036 a0001c0004t0001g0043 a0001c0004t0006g0040 a0001c0004t0011g0042 a0002c0005t0002g0006	7	80	0.0875	-30	c.334 others(51): Show c.3340+36712_3340+36741delATAAAATAAAATAAAATAAAATAA AATAAA		PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	4/4						chr13	TogoVar
PCDHA1_chr5_140781140_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0002 a0005c0006t0002	a0005c0006t0002g0108 a0005c0006t0002g0108	1	200	0.0050	-30	c.239 others(51): Show c.2394+58470_2394+58499delTTCTGAGTAATAAACTAAAGGGCC ATGAGT		PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0117 a0002c0002t0002g0117	1	202	0.0050	-30	c.238 others(51): Show c.2388+49802_2388+49831delTTCTGAGTAATAAACTAAAGGGCC ATGAGT		PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0004 a0004c0003t0004	a0004c0003t0004g0117 a0004c0003t0004g0117	1	208	0.0048	-30	c.239 others(51): Show c.2394+43563_2394+43592delTTCTGAGTAATAAACTAAAGGGCC ATGAGT		PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0173 a0001c0001t0004g0173	1	212	0.0047	-30	c.238 others(51): Show c.2385+37582_2385+37611delTTCTGAGTAATAAACTAAAGGGCC ATGAGT		PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0015 a0015	a0015c0024 a0015c0024	a0015c0024t0002 a0015c0024t0002	a0015c0024t0002g0188 a0015c0024t0002g0188	1	248	0.0040	-30	c.235 others(51): Show c.2355+10416_2355+10445delTTCTGAGTAATAAACTAAAGGGCC ATGAGT		PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0247 a0001c0001t0002g0247	1	258	0.0039	-30	c.239 others(49): Show c.2394+3439_2394+3468delTTCTGAGTAATAAACTAAAGGGCCAT GAGT		PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140847152	ATTTCTGA others(23): Show ATTTCTGAGTAATAAACTAAAGGGCCATGAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0002 a0002	a0002c0019 a0002c0019	a0002c0019t0002 a0002c0019t0002	a0002c0019t0002g0090 a0002c0019t0002g0090	1	256	0.0039	-30	c.-13 others(41): Show c.-1343_-1314delTTTCTGAGTAATAAACTAAAGGGCCATGAG		PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding					1229		chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp1 HG03098.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0007t0001 a0001c0001t0001 a0001c0007t0001	a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0007t0001g0106 others(2): Show a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0007t0001g0106 a0001c0007t0001g0107 a0001c0007t0001g0108	5	306	0.0163	-30	c.243 others(51): Show c.2436+22976_2436+23005delCATACATATATATATATATATATA TATATA		PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA11_chr5_141416051_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp2 HG03098.hp2 NA20129.hp2	a0001 a0004 a0001 a0004	a0001c0003 a0004c0007 a0001c0003 a0004c0007	a0001c0003t0004 a0004c0007t0004 a0001c0003t0004 a0004c0007t0004	a0001c0003t0004g0306 a0001c0003t0004g0307 a0001c0003t0004g0308 others(2): Show a0001c0003t0004g0306 a0001c0003t0004g0307 a0001c0003t0004g0308 a0004c0007t0004g0309 a0004c0007t0004g0310	5	310	0.0161	-30	c.243 others(51): Show c.2433+14927_2433+14956delCATACATATATATATATATATATA TATATA		PCDHGA11	ENSG00000253873.6	transcript	ENST00000398587.7	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA12_chr5_141425507_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp2 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp2 HG03098.hp1 NA20129.hp2	a0001 a0006 a0001 a0006	a0001c0005 a0006c0007 a0001c0005 a0006c0007	a0001c0005t0001 a0006c0007t0001 a0001c0005t0001 a0006c0007t0001	a0001c0005t0001g0050 a0001c0005t0001g0051 a0001c0005t0001g0159 others(2): Show a0001c0005t0001g0050 a0001c0005t0001g0051 a0001c0005t0001g0159 a0006c0007t0001g0255 a0006c0007t0001g0256	5	318	0.0157	-30	c.242 others(49): Show c.2424+5404_2424+5433delCATACATATATATATATATATATATA TATA		PCDHGA12	ENSG00000253159.3	transcript	ENST00000252085.4	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp2 HG03098.hp2 NA20129.hp1	a0002 a0003 a0002 a0003	a0002c0003 a0003c0004 a0002c0003 a0003c0004	a0002c0003t0001 a0003c0004t0001 a0002c0003t0001 a0003c0004t0001	a0002c0003t0001g0200 a0002c0003t0001g0204 a0003c0004t0001g0234 others(2): Show a0002c0003t0001g0200 a0002c0003t0001g0204 a0003c0004t0001g0234 a0003c0004t0001g0235 a0003c0004t0001g0236	5	268	0.0187	-30	c.242 others(51): Show c.2422-56220_2422-56191delCATACATATATATATATATATATA TATATA		PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp1 HG03098.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0106 others(2): Show a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0001g0114	5	272	0.0184	-30	c.242 others(51): Show c.2425-56220_2425-56191delCATACATATATATATATATATATA TATATA		PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp1 HG03098.hp1 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0207 a0001c0001t0001g0232 a0003c0003t0001g0029 others(2): Show a0001c0001t0001g0207 a0001c0001t0001g0232 a0003c0003t0001g0029 a0003c0003t0001g0030 a0003c0003t0001g0031	5	270	0.0185	-30	c.242 others(51): Show c.2425-56220_2425-56191delCATACATATATATATATATATATA TATATA		PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp2 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp2 HG03098.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0099 a0001c0001t0001g0100 a0002c0002t0001g0229 others(2): Show a0001c0001t0001g0099 a0001c0001t0001g0100 a0002c0002t0001g0229 a0002c0002t0001g0230 a0002c0002t0001g0231	5	274	0.0183	-30	c.251 others(51): Show c.2515-56220_2515-56191delCATACATATATATATATATATATA TATATA		PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA5_chr5_141359162_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp2 HG03098.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0002t0001g0018 others(2): Show a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0002t0001g0018 a0001c0002t0001g0124 a0001c0002t0001g0127	5	292	0.0171	-30	c.242 others(51): Show c.2422-56220_2422-56191delCATACATATATATATATATATATA TATATA		PCDHGA5	ENSG00000253485.3	transcript	ENST00000518069.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA6_chr5_141368891_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp2 HG03098.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0004t0001 a0001c0002t0001 a0001c0004t0001	a0001c0002t0001g0278 a0001c0002t0001g0283 a0001c0002t0001g0284 others(2): Show a0001c0002t0001g0278 a0001c0002t0001g0283 a0001c0002t0001g0284 a0001c0004t0001g0061 a0001c0004t0001g0062	5	292	0.0171	-30	c.242 others(51): Show c.2425-56220_2425-56191delCATACATATATATATATATATATA TATATA		PCDHGA6	ENSG00000253731.3	transcript	ENST00000517434.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA7_chr5_141377742_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp1 HG03098.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 others(2): Show a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0181 a0001c0001t0001g0182	5	292	0.0171	-30	c.242 others(51): Show c.2424+53264_2424+53293delCATACATATATATATATATATATA TATATA		PCDHGA7	ENSG00000253537.3	transcript	ENST00000518325.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA8_chr5_141387633_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp1 HG03098.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0024 a0001c0001t0001g0025 others(2): Show a0001c0001t0001g0007 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0301 a0001c0001t0001g0302	5	302	0.0166	-30	c.242 others(51): Show c.2424+43350_2424+43379delCATACATATATATATATATATATA TATATA		PCDHGA8	ENSG00000253767.3	transcript	ENST00000398604.3	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA9_chr5_141397778_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp2 HG02886.hp1 others(2): Show HG01884.hp2 HG02486.hp2 HG02886.hp1 HG03098.hp2 NA20129.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0279 a0001c0005t0001g0280 a0001c0005t0001g0282 others(2): Show a0001c0005t0001g0279 a0001c0005t0001g0280 a0001c0005t0001g0282 a0001c0005t0001g0283 a0001c0005t0001g0284	5	302	0.0166	-30	c.242 others(51): Show c.2424+33211_2424+33240delCATACATATATATATATATATATA TATATA		PCDHGA9	ENSG00000261934.3	transcript	ENST00000573521.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp2 HG03098.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0002c0004 a0001c0003 a0002c0004	a0001c0003t0001 a0002c0004t0001 a0001c0003t0001 a0002c0004t0001	a0001c0003t0001g0159 a0001c0003t0001g0160 a0002c0004t0001g0012 others(2): Show a0001c0003t0001g0159 a0001c0003t0001g0160 a0002c0004t0001g0012 a0002c0004t0001g0013 a0002c0004t0001g0014	5	278	0.0180	-30	c.241 others(51): Show c.2410-56220_2410-56191delCATACATATATATATATATATATA TATATA		PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB2_chr5_141354994_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp1 HG03098.hp2 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0086 a0001c0001t0001g0087 a0003c0003t0001g0279 others(2): Show a0001c0001t0001g0086 a0001c0001t0001g0087 a0003c0003t0001g0279 a0003c0003t0001g0280 a0003c0003t0001g0281	5	288	0.0174	-30	c.242 others(51): Show c.2422-56220_2422-56191delCATACATATATATATATATATATA TATATA		PCDHGB2	ENSG00000253910.3	transcript	ENST00000522605.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB3_chr5_141365242_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp2 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp2 HG03098.hp1 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0229 a0001c0001t0001g0230 a0003c0003t0001g0284 others(2): Show a0001c0001t0001g0229 a0001c0001t0001g0230 a0003c0003t0001g0284 a0003c0003t0001g0289 a0003c0003t0001g0290	5	296	0.0169	-30	c.241 others(51): Show c.2416-56220_2416-56191delCATACATATATATATATATATATA TATATA		PCDHGB3	ENSG00000262209.3	transcript	ENST00000576222.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB4_chr5_141382698_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp1 HG03098.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 others(2): Show a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0023 a0001c0001t0001g0024	5	294	0.0170	-30	c.239 others(51): Show c.2397+48306_2397+48335delCATACATATATATATATATATATA TATATA		PCDHGB4	ENSG00000253953.3	transcript	ENST00000519479.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB5_chr5_141392947_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp1 HG02886.hp1 HG03098.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0015 a0001c0001t0010g0016 a0001c0001t0010g0018 others(2): Show a0001c0001t0010g0015 a0001c0001t0010g0016 a0001c0001t0010g0018 a0001c0001t0010g0019 a0001c0001t0010g0020	5	300	0.0167	-30	c.239 others(51): Show c.2397+38063_2397+38092delCATACATATATATATATATATATA TATATA		PCDHGB5	ENSG00000276547.2	transcript	ENST00000617380.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB6_chr5_141403021_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02886.hp1 others(2): Show HG01884.hp1 HG02486.hp2 HG02886.hp1 HG03098.hp2 NA20129.hp1	a0002 a0002	a0002c0003 a0002c0009 a0002c0003 a0002c0009	a0002c0003t0001 a0002c0009t0001 a0002c0003t0001 a0002c0009t0001	a0002c0003t0001g0088 a0002c0003t0001g0089 a0002c0009t0001g0182 others(2): Show a0002c0003t0001g0088 a0002c0003t0001g0089 a0002c0009t0001g0182 a0002c0009t0001g0183 a0002c0009t0001g0184	5	302	0.0166	-30	c.241 others(51): Show c.2418+27967_2418+27996delCATACATATATATATATATATATA TATATA		PCDHGB6	ENSG00000253305.3	transcript	ENST00000520790.2	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB7_chr5_141412677_141517975	141438583	CATACATA others(23): Show CATACATACATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02886.hp1 others(2): Show HG01884.hp2 HG02486.hp1 HG02886.hp1 HG03098.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0282 a0001c0001t0002g0283 a0001c0001t0002g0303 others(2): Show a0001c0001t0002g0282 a0001c0001t0002g0283 a0001c0001t0002g0303 a0001c0001t0002g0304 a0001c0001t0002g0305	5	306	0.0163	-30	c.241 others(51): Show c.2415+18313_2415+18342delCATACATATATATATATATATATA TATATA		PCDHGB7	ENSG00000254122.3	transcript	ENST00000398594.4	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr5	TogoVar
PCGF3_chr4_700832_775089	701973	CAAAGAAA others(23): Show CAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0075 a0001c0001t0063g0075	1	366	0.0027	-30	c.-41 others(41): Show c.-4186_-4157delAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA		PCGF3	ENSG00000185619.19	transcript	ENST00000362003.10	protein_coding					3858		chr4	TogoVar
PCLO_chr7_82749012_83167884	83155155	AGCCAGGC others(23): Show AGCCAGGCTGTTGAGGTGGGGGCTTTGCTGG	A A	conservative_inframe_deletion conservative_inframe_deletion	MODERATE	HG02109.hp1 HG02486.hp2 HG02559.hp2 others(1): Show HG02109.hp1 HG02486.hp2 HG02559.hp2 HG03486.hp2	a0013 a0061 a0013 a0061	a0013c0082 a0013c0083 a0013c0084 others(1): Show a0013c0082 a0013c0083 a0013c0084 a0061c0081	a0013c0082t0022 a0013c0083t0021 a0013c0084t0015 others(1): Show a0013c0082t0022 a0013c0083t0021 a0013c0084t0015 a0061c0081t0015	a0013c0082t0022g0002 a0013c0083t0021g0004 a0013c0084t0015g0001 others(1): Show a0013c0082t0022g0002 a0013c0083t0021g0004 a0013c0084t0015g0001 a0061c0081t0015g0003	4	188	0.0213	-30	c.145 others(39): Show c.1456_1485delCCAGCAAAGCCCCCACCTCAACAGCCTGGC	p.Pro others(13): Show p.Pro486_Gly495del	PCLO	ENSG00000186472.20	transcript	ENST00000333891.14	protein_coding	2/25	1777/20284	1456/15429	486/5142			chr7	TogoVar

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