Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZNHIT1_chr7_101213165_101229190	101226166	ATGGTGGC others(24): Show ATGGTGGCGTGTGCGTGTAGTCCCAGCTACTC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	390	0.0026	-31	c.22 others(42): Show c.2209_*2239delTGGTGGCGTGTGCGTGTAGTCCCAGCTACTC		ZNHIT1	ENSG00000106400.12	transcript	ENST00000305105.3	protein_coding					1977		chr7	TogoVar
	ZNRF3_chr22_28878572_29062488	28937195	ATATATAT others(24): Show ATATATATATATATATATATATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00621.hp2 HG01255.hp1 others(14): Show HG00621.hp1 HG00621.hp2 HG01255.hp1 HG01928.hp1 HG01943.hp2 HG02132.hp2 HG02165.hp1 HG02293.hp1 HG02698.hp2 HG03017.hp1 HG03688.hp2 HG04204.hp1 NA18947.hp1 NA18990.hp1 NA19055.hp1 NA19060.hp2 NA19062.hp2	a0001 a0007 a0001 a0007	a0001c0002 a0001c0004 a0001c0011 others(1): Show a0001c0002 a0001c0004 a0001c0011 a0007c0012	a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 others(6): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0033 a0001c0002t0037 a0001c0004t0001 a0001c0004t0006 a0001c0011t0003 a0007c0012t0003	a0001c0002t0001g0067 a0001c0002t0002g0075 a0001c0002t0002g0098 others(14): Show a0001c0002t0001g0067 a0001c0002t0002g0075 a0001c0002t0002g0098 a0001c0002t0002g0106 a0001c0002t0003g0068 a0001c0002t0003g0072 a0001c0002t0003g0100 a0001c0002t0003g0111 a0001c0002t0033g0073 a0001c0002t0037g0077 a0001c0004t0001g0069 a0001c0004t0001g0070 a0001c0004t0001g0080 a0001c0004t0001g0101 a0001c0004t0006g0079 a0001c0011t0003g0076 a0007c0012t0003g0074	17	200	0.0850	-31	c.301 others(50): Show c.301-49879_301-49849delATATATATATATATATATATTTTTTT TTTTT		ZNRF3	ENSG00000183579.16	transcript	ENST00000544604.7	protein_coding	1/8					INFO_REALIGN_3_PRIME	chr22	TogoVar
	ZNRF3_chr22_28878572_29062488	28937197	ATATATAT others(24): Show ATATATATATATATATATATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0071 a0001c0002t0003g0071	1	221	0.0045	-31	c.301 others(50): Show c.301-49877_301-49847delATATATATATATATATATTTTTTTTT TTTTT		ZNRF3	ENSG00000183579.16	transcript	ENST00000544604.7	protein_coding	1/8					INFO_REALIGN_3_PRIME	chr22	TogoVar
	ZP4_chr1_237877404_237895922	237883632	GAGGGGGA others(24): Show GAGGGGGAGGGCGGGGGAGGGCGGGGGAGGGC	G G	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0111	1	446	0.0022	-31	c.139 others(48): Show c.1391-817_1391-787delGCCCTCCCCCGCCCTCCCCCGCCCTCCC CCT		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZP4_chr1_237877404_237895922	237883633	AGGGGGAG others(24): Show AGGGGGAGGGCGGGGGAGGGCGGGGGAGGGCC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00544.hp1 others(28): Show HG00099.hp2 HG00140.hp1 HG00544.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp2 HG01175.hp2 HG01243.hp2 HG01256.hp1 HG01433.hp2 HG02027.hp2 HG02258.hp2 HG02486.hp1 HG02523.hp2 HG02698.hp2 HG02738.hp2 HG03453.hp1 HG04228.hp2 NA18612.hp2 NA18906.hp2 NA18944.hp1 NA18946.hp1 NA18957.hp2 NA18966.hp1 NA18969.hp1 NA18974.hp1 NA19055.hp1 NA19084.hp1 NA19089.hp2 NA20752.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(19): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0106 a0001c0001t0001g0112 a0001c0001t0001g0114 a0001c0001t0001g0117 a0001c0001t0001g0146 a0001c0001t0001g0166 a0001c0001t0001g0175 a0001c0001t0001g0179 a0001c0001t0001g0203 a0001c0001t0001g0213 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0221 a0001c0001t0001g0223	31	379	0.0818	-31	c.139 others(48): Show c.1391-818_1391-788delGGCCCTCCCCCGCCCTCCCCCGCCCTCC CCC		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZRANB3_chr2_135191969_135536218	135312128	ATTTTATT others(24): Show ATTTTATTATTTTATTTTATTTTATTTTATTT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00621.hp2 HG00639.hp1 others(9): Show HG00558.hp1 HG00621.hp2 HG00639.hp1 HG00735.hp1 HG01243.hp1 HG01261.hp1 HG01978.hp2 HG03239.hp2 NA18747.hp1 NA18981.hp2 NA19083.hp1 NA19084.hp2	a0002 a0007 a0002 a0007	a0002c0003 a0007c0013 a0002c0003 a0007c0013	a0002c0003t0003 a0007c0013t0008 a0002c0003t0003 a0007c0013t0008	a0002c0003t0003g0056 a0002c0003t0003g0061 a0002c0003t0003g0063 others(9): Show a0002c0003t0003g0056 a0002c0003t0003g0061 a0002c0003t0003g0063 a0002c0003t0003g0065 a0002c0003t0003g0066 a0002c0003t0003g0067 a0002c0003t0003g0068 a0002c0003t0003g0070 a0002c0003t0003g0079 a0002c0003t0003g0080 a0002c0003t0003g0125 a0007c0013t0008g0058	12	160	0.0750	-31	c.966 others(48): Show c.966+1330_966+1360delAAATAAAATAAAATAAAATAAAATAATA AAA		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	8/20						chr2	TogoVar
	ZRANB3_chr2_135191969_135536218	135426850	AAAAAAAA others(24): Show AAAAAAAAAAAAAAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0011 a0005c0009t0011	a0005c0009t0011g0212 a0005c0009t0011g0212	1	212	0.0047	-31	c.162 others(50): Show c.162-36061_162-36031delATATATATATATATATATTTTTTTTT TTTTT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20						chr2	TogoVar
	ZRANB3_chr2_135191969_135536218	135426856	AAAAAAAA others(24): Show AAAAAAAAATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG03471.hp2 HG02896.hp2 HG03471.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0004	a0001c0005t0004g0083 a0001c0005t0004g0105 a0001c0005t0004g0083 a0001c0005t0004g0105	2	208	0.0096	-31	c.162 others(50): Show c.162-36067_162-36037delATATATATATATATATATATATATTT TTTTT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20						chr2	TogoVar
	ZRANB3_chr2_135191969_135536218	135426860	AAAAATAT others(24): Show AAAAATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02630.hp2 HG02647.hp1 others(3): Show HG02109.hp2 HG02630.hp2 HG02647.hp1 HG02895.hp1 HG03540.hp2 HG03579.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0027 a0001c0005t0004 a0001c0005t0027	a0001c0005t0004g0084 a0001c0005t0004g0090 a0001c0005t0004g0091 others(3): Show a0001c0005t0004g0084 a0001c0005t0004g0090 a0001c0005t0004g0091 a0001c0005t0004g0094 a0001c0005t0004g0097 a0001c0005t0027g0102	6	180	0.0333	-31	c.162 others(50): Show c.162-36071_162-36041delATATATATATATATATATATATATAT ATTTT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20						chr2	TogoVar
	ZRANB3_chr2_135191969_135536218	135493097	AAATATAT others(24): Show AAATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0201 a0002c0002t0002g0201	1	210	0.0048	-31	c.161 others(50): Show c.161+11201_161+11231delATATATATATATATATATATATATAT ATATT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20						chr2	TogoVar
	ZSWIM5_chr1_45011399_45211605	45044737	AAAAAAAA others(24): Show AAAAAAAAAAATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03490.hp1 NA18906.hp2 HG03490.hp1 NA18906.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0003 a0001c0003t0001 a0001c0003t0003	a0001c0003t0001g0193 a0001c0003t0003g0203 a0001c0003t0001g0193 a0001c0003t0003g0203	2	199	0.0101	-31	c.143 others(50): Show c.1433-1373_1433-1343delATATATATATATATATATATATTTTT TTTTT		ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	5/13						chr1	TogoVar
	ZSWIM7_chr17_15971560_16004704	15976091	AAAAAAAA others(24): Show AAAAAAAAATATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0026 a0001c0001t0004g0026	1	337	0.0030	-31	c.19 others(42): Show c.1925_*1955delATATATATATATATATATATATATTTTTTTT		ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding					468		chr17	TogoVar
	ZSWIM7_chr17_15971560_16004704	15976116	TATATATA others(24): Show TATATATATATATATATATATATATAAATAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0026 a0001c0001t0004g0026	1	335	0.0030	-31	c.19 others(42): Show c.1900_*1930delTTTATTTATATATATATATATATATATATAT		ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding					443		chr17	TogoVar
	ZYG11B_chr1_52721453_52832336	52817799	ATATATAT others(24): Show ATATATATATATATATATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03139.hp2 NA18906.hp1 HG03139.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0075 a0001c0001t0076 a0001c0001t0075 a0001c0001t0076	a0001c0001t0075g0158 a0001c0001t0076g0157 a0001c0001t0075g0158 a0001c0001t0076g0157	2	325	0.0062	-31	c.204 others(50): Show c.2044+1172_2044+1202delATATATATATATATATTTTTTTTTTT TTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817807	ATATATAT others(24): Show ATATATATATTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0082 a0001c0001t0013g0082	1	324	0.0031	-31	c.204 others(50): Show c.2044+1180_2044+1210delATATATATTTTTTTTTTTTTTTTTTT TTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4112066	ATATATAT others(24): Show ATATATATATATATATATATATATATATGTTT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0003 a0005c0009t0003	a0005c0009t0003g0226 a0005c0009t0003g0226	1	294	0.0034	-31	c.106 others(48): Show c.1066+512_1066+542delAAACATATATATATATATATATATATAT ATA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar