Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11B_chr1_52721453_52832336	52803105	TATATATA others(25): Show TATATATATATATACACACATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00544.hp1 HG02074.hp2 others(13): Show HG00423.hp2 HG00544.hp1 HG02074.hp2 HG02155.hp2 NA18747.hp2 NA18956.hp1 NA18960.hp2 NA18971.hp1 NA18972.hp2 NA18981.hp2 NA18984.hp2 NA18986.hp1 NA18988.hp2 NA19060.hp2 NA19079.hp1 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0036 a0001c0001t0081 a0001c0001t0004 a0001c0001t0036 a0001c0001t0081	a0001c0001t0004g0006 a0001c0001t0004g0009 a0001c0001t0004g0021 others(13): Show a0001c0001t0004g0006 a0001c0001t0004g0009 a0001c0001t0004g0021 a0001c0001t0004g0024 a0001c0001t0004g0025 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0004g0034 a0001c0001t0004g0038 a0001c0001t0004g0195 a0001c0001t0036g0012 a0001c0001t0036g0042 a0001c0001t0081g0010	16	327	0.0489	-32	c.169 others(49): Show c.1695+968_1695+999delTATATATATATACACACATATATATATA CACA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817793	ATATATAT others(25): Show ATATATATATATATATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0232 a0001c0002t0003g0232	1	337	0.0030	-32	c.204 others(51): Show c.2044+1166_2044+1197delATATATATATATATATATATATTTTT TTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817807	ATATATAT others(25): Show ATATATATATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0075	1	324	0.0031	-32	c.204 others(51): Show c.2044+1180_2044+1211delATATATATTTTTTTTTTTTTTTTTTT TTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar