Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11A_chr1_52837760_52899998	52846310	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00544.hp1 HG00558.hp2 others(36): Show HG00423.hp2 HG00544.hp1 HG00558.hp2 HG00741.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01255.hp2 HG01358.hp2 HG01928.hp2 HG01978.hp1 HG02055.hp2 HG02056.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp2 HG02293.hp1 HG02559.hp1 HG02818.hp1 HG02886.hp2 HG03471.hp2 HG03654.hp2 HG03710.hp2 NA18940.hp2 NA18941.hp2 NA18960.hp1 NA18963.hp2 NA18969.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19054.hp2 NA19058.hp1 NA19065.hp1 NA19074.hp1 NA19074.hp2 NA19084.hp2 NA19088.hp2 NA19090.hp1	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0002c0002 a0010c0010 a0001c0001 a0002c0002 a0010c0010	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(2): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0007 a0010c0010t0001	a0001c0001t0001g0160 a0002c0002t0001g0215 a0002c0002t0001g0216 others(36): Show a0001c0001t0001g0160 a0002c0002t0001g0215 a0002c0002t0001g0216 a0002c0002t0001g0218 a0002c0002t0001g0219 a0002c0002t0001g0220 a0002c0002t0001g0221 a0002c0002t0001g0222 a0002c0002t0001g0223 a0002c0002t0001g0224 a0002c0002t0001g0225 a0002c0002t0001g0226 a0002c0002t0001g0227 a0002c0002t0001g0228 a0002c0002t0001g0229 a0002c0002t0001g0230 a0002c0002t0001g0231 a0002c0002t0001g0232 a0002c0002t0001g0233 a0002c0002t0001g0235 a0002c0002t0001g0236 a0002c0002t0001g0238 a0002c0002t0001g0240 a0002c0002t0001g0243 a0002c0002t0001g0244 a0002c0002t0001g0245 a0002c0002t0001g0246 a0002c0002t0001g0248 a0002c0002t0001g0249 a0002c0002t0001g0250 a0002c0002t0001g0251 a0002c0002t0001g0252 a0002c0002t0001g0253 a0002c0002t0002g0217 a0002c0002t0002g0239 a0002c0002t0002g0241 a0002c0002t0002g0242 a0002c0002t0007g0247 a0010c0010t0001g0234	39	166	0.2349	-34	c.90+ others(49): Show c.90+3361_90+3394delATATATATATATATATATATATATATATAT ATAT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817805	ATATATAT others(27): Show ATATATATATATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19062.hp2 NA19004.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0095 a0001c0001t0033g0134 a0001c0001t0033g0095 a0001c0001t0033g0134	2	310	0.0065	-34	c.204 others(53): Show c.2044+1178_2044+1211delATATATATATTTTTTTTTTTTTTTTT TTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02257.hp2 HG02818.hp2 others(1): Show HG02145.hp1 HG02257.hp2 HG02818.hp2 HG03195.hp1	a0005 a0014 a0005 a0014	a0005c0060 a0014c0022 a0014c0040 a0005c0060 a0014c0022 a0014c0040	a0005c0060t0001 a0014c0022t0017 a0014c0040t0031 a0005c0060t0001 a0014c0022t0017 a0014c0040t0031	a0005c0060t0001g0224 a0014c0022t0017g0293 a0014c0022t0017g0294 others(1): Show a0005c0060t0001g0224 a0014c0022t0017g0293 a0014c0022t0017g0294 a0014c0040t0031g0292	4	40	0.1000	-34	c.106 others(51): Show c.1066+542_1066+575delATATATATATATATATATATATATATAT ATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar