Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FGF18_chr5_171414647_171462626	171440217	TGGGTGTG others(29): Show TGGGTGTGTGGGGGGGGGTGGTGCCATCGCGGGCTCA	T T	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0254 a0001c0001t0001g0254	1	388	0.0026	-36	c.250 others(53): Show c.250+3947_250+3982delGTGTGTGGGGGGGGGTGGTGCCATCGCG GGCTCAGG	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGF21_chr19_48750524_48763330	48757635	GGGCTGGG others(29): Show GGGCTGGGGCCTGGAACCCCGGGTCTGAGGGAGGAGA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00408.hp1 HG00408.hp2 others(179): Show HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00673.hp1 HG01069.hp1 HG01070.hp2 HG01074.hp2 HG01081.hp1 HG01099.hp2 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01358.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01993.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02071.hp2 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp2 HG04115.hp2 HG04184.hp2 HG04199.hp2 HG04204.hp1 HG04228.hp2 HG06807.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18940.hp2 NA18941.hp2 NA18943.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp2 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18973.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp2 NA18980.hp2 NA18981.hp1 NA18986.hp1 NA18990.hp2 NA18991.hp1 NA18992.hp1 NA18995.hp1 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19007.hp1 NA19007.hp2 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp2 NA19057.hp2 NA19058.hp2 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp1 NA19075.hp1 NA19075.hp2 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19082.hp1 NA19082.hp2 NA19083.hp2 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA19091.hp1 NA19091.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0001c0012 others(2): Show a0001c0001 a0001c0002 a0001c0012 a0003c0011 a0005c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0012t0001 a0003c0011t0001 a0005c0009t0002	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0042 a0001c0001t0001g0053 a0001c0001t0001g0057 a0001c0001t0001g0063 a0001c0001t0001g0069 a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0003g0003 a0001c0001t0005g0001 a0001c0001t0006g0001 a0001c0002t0001g0004 a0001c0002t0001g0017 a0001c0002t0001g0041 a0001c0002t0001g0049 a0001c0012t0001g0004 a0003c0011t0001g0010 a0005c0009t0002g0001	182	456	0.3991	-36	c.340 others(51): Show c.340-223_340-188delAGGCTGGGGCCTGGAACCCCGGGTCTGAGG GAGGAG	FGF21	ENSG00000105550.10	transcript	ENST00000593756.6	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr19	TogoVar
FGFR1OP2_chr12_26933470_26971648	26968473	CATATAAT others(29): Show CATATAATTACAAATATGTAAAAATCAGATGCATACG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0029 a0001c0001t0003g0029	1	426	0.0024	-36	c.37 others(47): Show c.3741_*3776delATATAATTACAAATATGTAAAAATCAGATGCATA CG	FGFR1OP2	ENSG00000111790.14	transcript	ENST00000229395.8	protein_coding		1826		chr12	TogoVar
FHIT_chr3_59742277_61256452	59764863	AACACACA others(29): Show AACACACACACACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00735.hp1 HG01071.hp1 others(11): Show HG00639.hp2 HG00735.hp1 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01981.hp2 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02630.hp1 HG03017.hp1 HG03017.hp2 NA19043.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0002c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(8): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0002t0001 a0001c0002t0005 a0001c0003t0003 a0001c0003t0004 a0002c0004t0005	a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0001t0001g0009 others(11): Show a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0042 a0001c0001t0004g0043 a0001c0001t0006g0039 a0001c0001t0007g0008 a0001c0001t0009g0040 a0001c0001t0013g0003 a0001c0002t0001g0031 a0001c0002t0005g0044 a0001c0003t0003g0024 a0001c0003t0004g0038 a0002c0004t0005g0014	14	46	0.3044	-36	c.349 others(55): Show c.349-12578_349-12543delGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	8/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	59986520	TATATATA others(29): Show TATATATATATATATATATATACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02257.hp1 HG01109.hp2 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0006 a0001c0001t0002g0037 a0001c0001t0001g0006 a0001c0001t0002g0037	2	46	0.0435	-36	c.279 others(55): Show c.279+24815_279+24850delGTGTGTGTGTGTGTGTATATATATAT ATATATATAT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	7/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60826152	TGGAAGGA others(29): Show TGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA	T T	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0026 a0001c0001t0003g0026	1	46	0.0217	-36	c.-11 others(55): Show c.-110-4177_-110-4142delTTCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTTCC	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	3/9			chr3	TogoVar
FILIP1L_chr3_99823811_100119501	100115557	TTCTCTCT others(29): Show TTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0233 a0002c0002t0002g0233	1	258	0.0039	-36	c.-15 others(47): Show c.-1551_-1516delGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGA GA	FILIP1L	ENSG00000168386.19	transcript	ENST00000477258.2	protein_coding		1057		chr3	TogoVar
FILIP1_chr6_75303090_75498800	75372621	AAAAGAAA others(29): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0274 a0001c0001t0001g0274	1	306	0.0033	-36	c.277 others(53): Show c.277-9740_277-9705delCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTT	FILIP1	ENSG00000118407.15	transcript	ENST00000237172.12	protein_coding	2/5			chr6	TogoVar
FLI1_chr11_128689072_128818267	128757044	TTTTCTTT others(29): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp1 NA19240.hp1 HG02109.hp2 HG02145.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0004t0001 a0001c0001t0002 a0001c0004t0001	a0001c0001t0002g0219 a0001c0004t0001g0267 a0001c0004t0001g0287 a0001c0001t0002g0219 a0001c0004t0001g0267 a0001c0004t0001g0287	3	328	0.0092	-36	c.19- others(51): Show c.19-1037_19-1002delTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCT	FLI1	ENSG00000151702.18	transcript	ENST00000527786.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
FLOT2_chr17_28874339_28902733	28897639	CGCCGGCC others(29): Show CGCCGGCCGCGCCCAGCCTATCCCGCCACCCCCAGCG	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18950.hp1 NA18967.hp1 NA18950.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0050 a0001c0001t0009g0050	2	422	0.0047	-36	c.-10 others(44): Show c.-101_-66delCGCTGGGGGTGGCGGGATAGGCTGGGCGCGGCCGGC	FLOT2	ENSG00000132589.16	transcript	ENST00000394908.9	protein_coding	1/11	66		chr17	TogoVar
FLT1_chr13_28295346_28500128	28473761	GGAAGGAA others(29): Show GGAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG03130.hp2 NA18980.hp2 HG03130.hp2 NA18980.hp2	a0001 a0001	a0001c0002 a0001c0015 a0001c0002 a0001c0015	a0001c0002t0001 a0001c0015t0002 a0001c0002t0001 a0001c0015t0002	a0001c0002t0001g0005 a0001c0015t0002g0222 a0001c0002t0001g0005 a0001c0015t0002g0222	2	228	0.0088	-36	c.65- others(51): Show c.65-6180_65-6145delTTTCTTTCTTTCTTTCTTTCCTTCCTTCCT TCCTTC	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	1/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28473765	GGAAGGAA others(29): Show GGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0025 a0001c0005t0025	a0001c0005t0025g0223 a0001c0005t0025g0223	1	228	0.0044	-36	c.65- others(51): Show c.65-6184_65-6149delTTTCTTTCTTTCTTTCTTTCTTTCCTTCCT TCCTTC	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	1/29			chr13	TogoVar
FLT4_chr5_180596506_180654600	180635043	TGGGTGGG others(29): Show TGGGTGGGTGGATGGATGGATGGAAGTATGGGTGGGA	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02083.hp1 HG02109.hp1 others(3): Show HG00673.hp2 HG02083.hp1 HG02109.hp1 NA18612.hp2 NA18943.hp2 NA18967.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0002c0003 others(1): Show a0001c0001 a0002c0002 a0002c0003 a0006c0014	a0001c0001t0001 a0002c0002t0001 a0002c0003t0003 others(1): Show a0001c0001t0001 a0002c0002t0001 a0002c0003t0003 a0006c0014t0009	a0001c0001t0001g0070 a0002c0002t0001g0339 a0002c0003t0003g0095 others(3): Show a0001c0001t0001g0070 a0002c0002t0001g0339 a0002c0003t0003g0095 a0002c0003t0003g0108 a0002c0003t0003g0132 a0006c0014t0009g0302	6	388	0.0155	-36	c.59- others(51): Show c.59-3301_59-3266delTCCCACCCATACTTCCATCCATCCATCCAC CCACCC	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180635278	GTGGATGG others(29): Show GTGGATGGATGGATGGAAGTATGGGTGGATGGGTGGA	G G	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0190 a0002c0003t0003g0190	1	388	0.0026	-36	c.59- others(51): Show c.59-3536_59-3501delTCCACCCATCCACCCATACTTCCATCCATC CATCCA	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180635403	TGGATGGA others(29): Show TGGATGGATGGATGGATGGAAGTATGGGTGGATGGGA	T T	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0253 a0001c0001t0002g0253	1	388	0.0026	-36	c.59- others(51): Show c.59-3661_59-3626delTCCCATCCACCCATACTTCCATCCATCCAT CCATCC	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FMNL2_chr2_152330174_152654826	152412446	TTATATAT others(29): Show TTATATATATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0010	a0002c0002t0010g0085 a0002c0002t0010g0085	1	200	0.0050	-36	c.117 others(55): Show c.117+76747_117+76782delTATATATATATATATATATATATATA TATATATATA	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	1/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FNBP1L_chr1_93443118_93559661	93507083	ACACACAC others(29): Show ACACACACACACACACACACACACACTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	324	0.0031	-36	c.140 others(53): Show c.140+7502_140+7537delACACACACACACACACACACACACTCTC TCTCTCTC	FNBP1L	ENSG00000137942.18	transcript	ENST00000271234.13	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
FNDC1_chr6_159164400_159277108	159268809	CATCTATC others(29): Show CATCTATCTATTCATCTATCTATCTATCTATCTATCT	C C	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0041 a0041	a0041c0074 a0041c0074	a0041c0074t0001 a0041c0074t0001	a0041c0074t0001g0079 a0041c0074t0001g0079	1	306	0.0033	-36	c.556 others(53): Show c.5569+894_5569+929delTCATCTATCTATCTATCTATCTATCTAT CTATCTAT	FNDC1	ENSG00000164694.17	transcript	ENST00000297267.14	protein_coding	22/22		INFO_REALIGN_3_PRIME	chr6	TogoVar
FNDC3B_chr3_172034578_172406669	172188321	TGTTTCCC others(29): Show TGTTTCCCCTTGCTATGTTTAGAGTGGTGGAACTGAA	T T	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0005 a0005	a0005c0012 a0005c0012	a0005c0012t0002 a0005c0012t0002	a0005c0012t0002g0133 a0005c0012t0002g0133	1	196	0.0051	-36	c.188 others(55): Show c.188-38510_188-38475delTCCCCTTGCTATGTTTAGAGTGGTGG AACTGAAGTT	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNDC3B_chr3_172034578_172406669	172358954	TTGGTGGT others(29): Show TTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG	T T	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0044 a0001c0001t0011g0044	1	196	0.0051	-36	c.279 others(55): Show c.2796-3649_2796-3614delGTGGTGGTGGTGGTGGTGGTGGTGGT GGTGGTGGTG	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	22/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNIP1_chr5_131636714_131802017	131693289	AATATATA others(29): Show AATATATACATATATATATATATATATACACATATAT	A A	intron_variant intron_variant	MODIFIER	HG02155.hp2 NA18991.hp2 HG02155.hp2 NA18991.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0232 a0001c0004t0001g0257 a0001c0004t0001g0232 a0001c0004t0001g0257	2	328	0.0061	-36	c.120 others(55): Show c.1202+5592_1202+5627delATATATGTGTATATATATATATATAT ATGTATATAT	FNIP1	ENSG00000217128.13	transcript	ENST00000510461.6	protein_coding	11/17			chr5	TogoVar
FOXD4_chr9_111231_123417	115820	GTGTATAT others(29): Show GTGTATATATATATATATATATATATATATATATATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp2 HG01361.hp1 HG02486.hp2 others(5): Show HG00741.hp2 HG01361.hp1 HG02486.hp2 HG02622.hp2 HG02647.hp1 HG03540.hp1 NA19240.hp1 NA21309.hp2	a0006 a0006	a0006c0009 a0006c0020 a0006c0009 a0006c0020	a0006c0009t0003 a0006c0020t0005 a0006c0009t0003 a0006c0020t0005	a0006c0009t0003g0000 a0006c0020t0005g0000 a0006c0009t0003g0000 a0006c0020t0005g0000	8	452	0.0177	-36	c.94 others(45): Show c.944_*979delTATATATATATATATATATATATATATATATATACA	FOXD4	ENSG00000170122.6	transcript	ENST00000382500.4	protein_coding		410		chr9	TogoVar
FOXI2_chr10_127732185_127746183	127739803	CCACACTC others(29): Show CCACACTCACACCCACACCCACACCCACACCCACACT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00642.hp2 HG00738.hp2 HG01069.hp1 others(22): Show HG00642.hp2 HG00738.hp2 HG01069.hp1 HG01167.hp2 HG01169.hp2 HG01261.hp2 HG01515.hp1 HG01517.hp1 HG01884.hp1 HG01952.hp1 HG02559.hp2 HG02723.hp1 HG02895.hp2 HG02896.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp2 HG04115.hp2 HG04199.hp1 NA18522.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0012 a0001c0001t0014 others(5): Show a0001c0001t0007 a0001c0001t0012 a0001c0001t0014 a0001c0001t0035 a0001c0001t0057 a0001c0001t0058 a0001c0001t0067 a0001c0001t0068	a0001c0001t0007g0002 a0001c0001t0012g0002 a0001c0001t0014g0002 others(5): Show a0001c0001t0007g0002 a0001c0001t0012g0002 a0001c0001t0014g0002 a0001c0001t0035g0002 a0001c0001t0057g0002 a0001c0001t0058g0002 a0001c0001t0067g0002 a0001c0001t0068g0002	25	434	0.0576	-36	c.85 others(45): Show c.850_*885delCCACACCCACACCCACACCCACACTCACACTCACAC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	850	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXI2_chr10_127732185_127746183	127739827	CCACACCC others(29): Show CCACACCCACACTCACACTCACACTCACACCCACACT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0074 a0001c0001t0074	a0001c0001t0074g0001 a0001c0001t0074g0001	1	434	0.0023	-36	c.88 others(45): Show c.880_*915delTCACACTCACACCCACACTCACACCCACACTCACAC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	880	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXL1_chr16_86573549_86588478	86587507	TCACCATT others(29): Show TCACCATTATCACCACCATCACCATTATCATCACCAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 HG03579.hp2 NA18964.hp1 HG02886.hp1 HG03579.hp2 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0019 a0001c0001t0009 a0001c0001t0019	a0001c0001t0009g0000 a0001c0001t0019g0000 a0001c0001t0009g0000 a0001c0001t0019g0000	3	462	0.0065	-36	c.77 others(47): Show c.7747_*7782delCACCATTATCACCACCATCACCATTATCATCACC AC	FOXL1	ENSG00000176678.6	transcript	ENST00000320241.5	protein_coding		4030		chr16	TogoVar
FOXN2_chr2_48309682_48384295	48321594	TTTTAGTA others(29): Show TTTTAGTACATTTTATGTGGTAAGGGTAAAAGTATTA	T T	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03453.hp1 HG03225.hp2 HG03453.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0249 a0001c0002t0003g0250 a0001c0002t0003g0249 a0001c0002t0003g0250	2	344	0.0058	-36	c.-15 others(55): Show c.-157+6856_-156-6856delAGTACATTTTATGTGGTAAGGGTAAA AGTATTATTT	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
FOXN3_chr14_89151177_89422233	89288704	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0074 a0001c0001t0074	a0001c0001t0074g0211 a0001c0001t0074g0211	1	230	0.0044	-36	c.681 others(53): Show c.681-7726_681-7691delTATATATATATATATAGAGAGAGAGAGA GAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288706	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0085 a0001c0001t0085	a0001c0001t0085g0217 a0001c0001t0085g0217	1	230	0.0044	-36	c.681 others(53): Show c.681-7728_681-7693delTATATATATATATATATAGAGAGAGAGA GAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288708	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG03017.hp1 HG03453.hp2 HG01070.hp2 HG03017.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0018 a0001c0001t0024 a0001c0001t0002 a0001c0001t0018 a0001c0001t0024	a0001c0001t0002g0104 a0001c0001t0018g0091 a0001c0001t0024g0105 a0001c0001t0002g0104 a0001c0001t0018g0091 a0001c0001t0024g0105	3	230	0.0130	-36	c.681 others(53): Show c.681-7730_681-7695delTATATATATATATATATATAGAGAGAGA GAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288710	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0106 a0001c0001t0002g0106	1	230	0.0044	-36	c.681 others(53): Show c.681-7732_681-7697delTATATATATATATATATATATAGAGAGA GAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360833	TACCACCT others(29): Show TACCACCTCCAGCACCACCTCCACCACCACCTCCACC	T T	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0175 a0001c0001t0002g0175	1	230	0.0044	-36	c.544 others(55): Show c.544-10061_544-10026delGGTGGAGGTGGTGGTGGAGGTGGTGC TGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360963	AGCACCAC others(29): Show AGCACCACCTCCACCACTACCACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0081 a0001c0001t0081	a0001c0001t0081g0098 a0001c0001t0081g0098	1	230	0.0044	-36	c.544 others(55): Show c.544-10191_544-10156delAGGTGGTGCTGGAGGTGGTAGTGGTG GAGGTGGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361022	CTCCACCA others(29): Show CTCCACCACCACCTCCACCACCACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 NA19065.hp2 HG00738.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0015 a0001c0003t0001 a0001c0001t0015 a0001c0003t0001	a0001c0001t0015g0140 a0001c0003t0001g0137 a0001c0001t0015g0140 a0001c0003t0001g0137	2	230	0.0087	-36	c.544 others(55): Show c.544-10250_544-10215delAGTGCTGGAGGTGGTGGTGGTGGAGG TGGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361057	CTACCTCC others(29): Show CTACCTCCAGCACCACCTCCACCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	NA18960.hp2 NA18965.hp2 NA18960.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0022 a0001c0003t0001 a0001c0001t0022 a0001c0003t0001	a0001c0001t0022g0017 a0001c0003t0001g0054 a0001c0001t0022g0017 a0001c0003t0001g0054	2	230	0.0087	-36	c.544 others(55): Show c.544-10285_544-10250delCTGGAGGTGGTGGTGGTGGAGGTGGT GCTGGAGGTA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361368	TCCAGCAC others(29): Show TCCAGCACCACCTCCACCACCACCACCTCCAGCACCA	T T	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0189 a0001c0001t0014g0189	1	230	0.0044	-36	c.544 others(55): Show c.544-10596_544-10561delTGGTGCTGGAGGTGGTGGTGGTGGAG GTGGTGCTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361566	CTCCACCA others(29): Show CTCCACCACCACCTCCACCACTACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0018 a0001c0001t0057g0018	1	230	0.0044	-36	c.544 others(55): Show c.544-10794_544-10759delAGTGCTGGAGGTGGTAGTGGTGGAGG TGGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361628	CCACCTCC others(29): Show CCACCTCCACCACCACCTCCACCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	230	0.0044	-36	c.544 others(55): Show c.544-10856_544-10821delCTGGAGGTGGTGGTGGTGGAGGTGGT GGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361636	ACCACCAC others(29): Show ACCACCACCTCCACCACCACCACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0090 a0001c0001t0090	a0001c0001t0090g0155 a0001c0001t0090g0155	1	230	0.0044	-36	c.544 others(55): Show c.544-10864_544-10829delAGGTGGTGCTGGAGGTGGTGGTGGTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361683	CTCCACCA others(29): Show CTCCACCACCACCTCCACCACTACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0189 a0001c0001t0014g0189	1	230	0.0044	-36	c.544 others(55): Show c.544-10911_544-10876delAGTGCTGGAGGTGGTAGTGGTGGAGG TGGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361714	AGCACTAC others(29): Show AGCACTACCTCCACCACCACCACCTCCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	230	0.0044	-36	c.544 others(55): Show c.544-10942_544-10907delAGGTGGTGGTGGAGGTGGTGGTGGTG GAGGTAGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361818	CTCCACCA others(29): Show CTCCACCACCACCTCCACCACTACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0074 a0001c0001t0004g0074	1	230	0.0044	-36	c.544 others(55): Show c.544-11046_544-11011delAGTGCTGGAGGTGGTAGTGGTGGAGG TGGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362058	CTCCACCA others(29): Show CTCCACCACTACCACCTCCAGCACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0161 a0001c0001t0061g0161	1	230	0.0044	-36	c.544 others(55): Show c.544-11286_544-11251delAGTGGTGGAGGTGGTGCTGGAGGTGG TAGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362254	ACCACCAC others(29): Show ACCACCACCACCTCCTCCTCCTCCACCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	230	0.0044	-36	c.544 others(55): Show c.544-11482_544-11447delAGGTGGTGGTGGTGGAGGAGGAGGAG GTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362635	ATCTCCAC others(29): Show ATCTCCACCACCACCACCACCATCTCCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp2 HG02451.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0048 a0001c0001t0002 a0001c0001t0048	a0001c0001t0002g0044 a0001c0001t0048g0038 a0001c0001t0002g0044 a0001c0001t0048g0038	2	230	0.0087	-36	c.544 others(55): Show c.544-11863_544-11828delAGGTGGTGGTGGAGATGGTGGTGGTG GTGGTGGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362647	ACCACCAC others(29): Show ACCACCACCATCTCCACCACCACCTCCACCACCATCT	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01081.hp2 HG01975.hp2 others(4): Show HG00673.hp1 HG01081.hp2 HG01975.hp2 HG02615.hp2 HG04184.hp2 NA19065.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0040 a0001c0001t0061 a0001c0001t0062 a0001c0003t0001	a0001c0001t0001g0146 a0001c0001t0004g0127 a0001c0001t0006g0219 others(4): Show a0001c0001t0001g0146 a0001c0001t0004g0127 a0001c0001t0006g0219 a0001c0001t0040g0184 a0001c0001t0061g0161 a0001c0001t0062g0117 a0001c0003t0001g0137	7	230	0.0304	-36	c.544 others(55): Show c.544-11875_544-11840delAGATGGTGGTGGAGGTGGTGGTGGAG ATGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362708	CCACCACC others(29): Show CCACCACCACCATCTCCACCACCACCTCCACCACCAT	C C	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0163 a0001c0001t0076g0163	1	230	0.0044	-36	c.544 others(55): Show c.544-11936_544-11901delATGGTGGTGGAGGTGGTGGTGGAGAT GGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXQ1_chr6_1307098_1319758	1318682	AGCCCCCT others(29): Show AGCCCCCTACAGGGACGGTGACACTGTTTGCTCTCAC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	-36	c.47 others(47): Show c.4767_*4802delGCCCCCTACAGGGACGGTGACACTGTTTGCTCTC AC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		3925		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1319722	CAAAATTA others(29): Show CAAAATTAGCCGGGCAGCGGTGGCGCACGCCTGTAAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02015.hp1 HG02015.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	-36	c.58 others(47): Show c.5807_*5842delAAAATTAGCCGGGCAGCGGTGGCGCACGCCTGTA AT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		4965		chr6	TogoVar
FREM2_chr13_38682077_38892131	38813496	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCT	C C	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0037 a0037	a0037c0063 a0037c0063	a0037c0063t0014 a0037c0063t0014	a0037c0063t0014g0104 a0037c0063t0014g0104	1	262	0.0038	-36	c.601 others(57): Show c.6019+28689_6019+28724delTCTCTCTCTCTCTCTCTCTCTCCT CTCTCTCTCTCT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23			chr13	TogoVar
FREM2_chr13_38682077_38892131	38813539	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03453.hp2 HG01891.hp1 HG03453.hp2	a0001 a0034 a0001 a0034	a0001c0001 a0034c0088 a0001c0001 a0034c0088	a0001c0001t0018 a0034c0088t0011 a0001c0001t0018 a0034c0088t0011	a0001c0001t0018g0057 a0034c0088t0011g0226 a0001c0001t0018g0057 a0034c0088t0011g0226	2	262	0.0076	-36	c.601 others(57): Show c.6019+28733_6019+28768delCTCTCTCTCTCTCTCTCTCTCTCT ATATATATATAT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr13	TogoVar

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Search Results (Total: 3870 hits)