Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LOC400499_chr16_11367015_11532247	11369961	AAAAAAAA others(29): Show AAAAAAAAAATATGTGTGTATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0048 a0048	a0048c0114 a0048c0114	a0048c0114t0007 a0048c0114t0007	a0048c0114t0007g0167 a0048c0114t0007g0167	1	310	0.0032	-36	c.27 others(47): Show c.2737_*2772delATATATATATATATATATACACACATATTTTTTT TT		LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding					2053		chr16	TogoVar
LOC93622_chr4_6669075_6681047	6674464	GGTGGCTC others(29): Show GGTGGCTCGGCTGTGCGCCGAAGCAGAGAGGAAGGCT	G G	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG01168.hp2 HG01168.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0004 a0003c0005t0004	a0003c0005t0004g0000 a0003c0005t0004g0000	1	462	0.0022	-36	c.254 others(43): Show c.254_289delTGGCTCGGCTGTGCGCCGAAGCAGAGAGGAAGGCTG	p.Val others(11): Show p.Val85_Ala96del	LOC93622	ENSG00000170846.17	transcript	ENST00000635031.2	protein_coding	1/1	392/1973	254/360	85/119		INFO_REALIGN_3_PRIME	chr4	TogoVar
LONRF3_chrX_118969618_119023355	119000775	TTCTCTCT others(29): Show TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0263 a0001c0001t0001g0263	1	309	0.0032	-36	c.141 others(55): Show c.1416-5317_1416-5282delTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTC		LONRF3	ENSG00000175556.17	transcript	ENST00000371628.8	protein_coding	5/10					INFO_REALIGN_3_PRIME	chrX	TogoVar
LPAR1_chr9_110868263_111043470	110892818	AAGGAAGG others(29): Show AAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGC	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG02523.hp1 HG03669.hp1 others(4): Show HG00733.hp2 HG02523.hp1 HG03669.hp1 HG03834.hp1 NA18951.hp2 NA18998.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0002t0003 a0001c0001t0007 a0001c0002t0003	a0001c0001t0007g0163 a0001c0002t0003g0093 a0001c0002t0003g0107 others(4): Show a0001c0001t0007g0163 a0001c0002t0003g0093 a0001c0002t0003g0107 a0001c0002t0003g0108 a0001c0002t0003g0109 a0001c0002t0003g0122 a0001c0002t0003g0282	7	302	0.0232	-36	c.794 others(55): Show c.794-17132_794-17097delGCCTGCCTGCCTGCCTGCCTGCCTGC CTTCCTTCCT		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	5/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	111009998	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00733.hp1 others(20): Show HG00140.hp1 HG00280.hp1 HG00733.hp1 HG00735.hp1 HG01069.hp1 HG01071.hp2 HG01106.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01517.hp2 HG01891.hp1 HG01934.hp1 HG01934.hp2 HG02055.hp2 HG02602.hp1 HG02818.hp2 HG02886.hp1 HG03225.hp1 HG03492.hp2 NA20129.hp1 NA20752.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0016 a0001c0002t0003	a0001c0001t0001g0033 a0001c0001t0001g0046 a0001c0001t0001g0080 others(20): Show a0001c0001t0001g0033 a0001c0001t0001g0046 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0193 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0291 a0001c0001t0002g0045 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0255 a0001c0001t0004g0078 a0001c0001t0005g0050 a0001c0001t0005g0062 a0001c0001t0005g0079 a0001c0001t0006g0077 a0001c0001t0016g0293 a0001c0002t0003g0006	23	302	0.0762	-36	c.-18 others(57): Show c.-182+26088_-182+26123delATATATATATATATATATATATAT ATATATATATAT		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5						chr9	TogoVar
LPA_chr6_160526482_160669275	160576332	GTGTGTGT others(29): Show GTGTGTGTGTATATATATATATATATATATATATACA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02622.hp1 NA18522.hp2 others(1): Show HG02145.hp1 HG02622.hp1 NA18522.hp2 NA19030.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0001 a0005c0006t0001	a0005c0006t0001g0092 a0005c0006t0001g0093 a0005c0006t0001g0094 others(1): Show a0005c0006t0001g0092 a0005c0006t0001g0093 a0005c0006t0001g0094 a0005c0006t0001g0095	4	148	0.0270	-36	c.463 others(53): Show c.4631+768_4631+803delTGTATATATATATATATATATATATATA CACACACA		LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	28/38						chr6	TogoVar
LPCAT1_chr5_1456427_1528960	1482527	GGGGTGGG others(29): Show GGGGTGGGGCAGAGCCAGGGCAGGGTGGGGTGGGGTA	G G	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0121 a0001c0002t0001g0121	1	386	0.0026	-36	c.726 others(51): Show c.726+865_726+900delTACCCCACCCCACCCTGCCCTGGCTCTGCC CCACCC		LPCAT1	ENSG00000153395.10	transcript	ENST00000283415.4	protein_coding	6/13						chr5	TogoVar
LRBA_chr4_150259435_151020284	150559885	TTATATAT others(29): Show TTATATATAATTATATATAATTATATATAATATATAA	T T	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01515.hp2 HG01891.hp2 others(17): Show HG01255.hp1 HG01515.hp2 HG01891.hp2 HG02055.hp2 HG02109.hp2 HG02280.hp2 HG02486.hp2 HG02630.hp1 HG02723.hp2 HG03225.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp2 HG04115.hp1 NA18939.hp2 NA18941.hp2 NA18970.hp2 NA19084.hp1 NA19091.hp1	a0001 a0003 a0006 others(3): Show a0001 a0003 a0006 a0008 a0012 a0020	a0001c0001 a0001c0005 a0003c0012 others(5): Show a0001c0001 a0001c0005 a0003c0012 a0006c0008 a0008c0016 a0008c0020 a0012c0018 a0020c0021	a0001c0001t0001 a0001c0005t0001 a0003c0012t0003 others(6): Show a0001c0001t0001 a0001c0005t0001 a0003c0012t0003 a0006c0008t0001 a0006c0008t0002 a0008c0016t0003 a0008c0020t0003 a0012c0018t0001 a0020c0021t0002	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0015 others(17): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0068 a0001c0001t0001g0082 a0001c0001t0001g0094 a0001c0001t0001g0097 a0001c0001t0001g0117 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0005t0001g0159 a0003c0012t0003g0078 a0006c0008t0001g0113 a0006c0008t0002g0116 a0008c0016t0003g0127 a0008c0020t0003g0006 a0012c0018t0001g0126 a0020c0021t0002g0047	20	180	0.1111	-36	c.633 others(57): Show c.6330+28127_6330+28162delTTATATATTATATATAATTATATA TAATTATATATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	40/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150639781	ATGTGTGT others(29): Show ATGTGTGTGTGTATATATATATATATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02622.hp1 HG02451.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0013 a0001c0001 a0001c0013	a0001c0001t0001 a0001c0013t0003 a0001c0001t0001 a0001c0013t0003	a0001c0001t0001g0026 a0001c0013t0003g0096 a0001c0001t0001g0026 a0001c0013t0003g0096	2	180	0.0111	-36	c.592 others(57): Show c.5922-40686_5922-40651delCACACACACACATATATATATATA TACACACACACA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150658593	CCCTCTCC others(29): Show CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTG	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 NA18522.hp2 HG02647.hp1 NA18522.hp2	a0001 a0011 a0001 a0011	a0001c0001 a0011c0025 a0001c0001 a0011c0025	a0001c0001t0006 a0011c0025t0002 a0001c0001t0006 a0011c0025t0002	a0001c0001t0006g0001 a0011c0025t0002g0172 a0001c0001t0006g0001 a0011c0025t0002g0172	2	180	0.0111	-36	c.592 others(57): Show c.5921+24922_5921+24957delCAGAGGGAGAGGGAGAGGGAGAGG GAGAGGGAGAGG		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRCH3_chr3_197786254_197893436	197876842	GCAGTGAT others(29): Show GCAGTGATTCTCTTTACCCAACTCACCGCACCCATGA	G G	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0006 a0001c0004t0006	a0001c0004t0006g0031 a0001c0004t0006g0031	1	292	0.0034	-36	c.220 others(55): Show c.2208+1103_2208+1138delACAGTGATTCTCTTTACCCAACTCAC CGCACCCATG		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197876878	ACAGTGAT others(29): Show ACAGTGATTCTCTTTACCCAACTCACCGCACCCATGG	A A	intron_variant intron_variant	MODIFIER	HG02735.hp2 NA19030.hp2 HG02735.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0179 a0001c0001t0001g0050 a0001c0001t0001g0179	2	292	0.0069	-36	c.220 others(55): Show c.2208+1375_2208+1410delACTCACCGCACCCATGGCAGTGATTC TCTTTACCCA		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197877151	CTCACCGC others(29): Show CTCACCGCACCCATGGCAGTGATTCTCTTTACCCAGT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02559.hp2 HG02922.hp1 others(5): Show HG02109.hp2 HG02559.hp2 HG02922.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp2 NA20300.hp2 NA21309.hp1	a0001 a0001	a0001c0004 a0001c0007 a0001c0004 a0001c0007	a0001c0004t0006 a0001c0004t0016 a0001c0004t0061 others(1): Show a0001c0004t0006 a0001c0004t0016 a0001c0004t0061 a0001c0007t0006	a0001c0004t0006g0080 a0001c0004t0006g0138 a0001c0004t0006g0279 others(5): Show a0001c0004t0006g0080 a0001c0004t0006g0138 a0001c0004t0006g0279 a0001c0004t0016g0038 a0001c0004t0016g0040 a0001c0004t0016g0045 a0001c0004t0061g0004 a0001c0007t0006g0196	8	292	0.0274	-36	c.220 others(55): Show c.2208+1411_2208+1446delGTTCACCGCACCCATGGCAGTGATTC TCTTTACCCA		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197877259	CTCACCGC others(29): Show CTCACCGCACCCATGGCAGTGATTCTCTTTACCCAGT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA18522.hp1 NA18964.hp1 HG02630.hp1 NA18522.hp1 NA18964.hp1	a0001 a0001	a0001c0004 a0001c0007 a0001c0004 a0001c0007	a0001c0004t0006 a0001c0004t0016 a0001c0007t0001 a0001c0004t0006 a0001c0004t0016 a0001c0007t0001	a0001c0004t0006g0073 a0001c0004t0016g0051 a0001c0007t0001g0005 a0001c0004t0006g0073 a0001c0004t0016g0051 a0001c0007t0001g0005	3	292	0.0103	-36	c.220 others(55): Show c.2208+1519_2208+1554delGTTCACCGCACCCATGGCAGTGATTC TCTTTACCCA		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197877403	TTCACCGC others(29): Show TTCACCGCACCCATGGCAGTGATTCTCTTTACCCAAC	T T	intron_variant intron_variant	MODIFIER	NA20805.hp2 NA20805.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0058 a0001c0004t0058	a0001c0004t0058g0032 a0001c0004t0058g0032	1	292	0.0034	-36	c.220 others(55): Show c.2208+1751_2208+1786delGCAGTGATTCTCTTTACCCAACTCAC CGCACCCATG		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197877526	GCAGTGAT others(29): Show GCAGTGATTCTCTTTACCCAACTCACCGCACCCATGA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01258.hp1 HG02257.hp1 HG00735.hp1 HG01258.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0143 a0001c0001t0001g0156 a0001c0001t0001g0255 a0001c0001t0001g0143 a0001c0001t0001g0156 a0001c0001t0001g0255	3	292	0.0103	-36	c.220 others(55): Show c.2208+1771_2208+1806delACTCACCGCACCCATGACAGTGATTC TCTTTACCCA		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCOL1_chr12_132598151_132615582	132598550	CCCCTGCT others(29): Show CCCCTGCTCCTCTCCGCGCGCCCCTCCTCTCCGCTCG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19066.hp2 NA19091.hp2 NA19066.hp2 NA19091.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0025 a0003c0003t0001g0060 a0003c0003t0001g0025 a0003c0003t0001g0060	2	390	0.0051	-36	c.48 others(47): Show c.4816_*4851delCGAGCGGAGAGGAGGGGCGCGCGGAGAGGAGCAG GG		LRCOL1	ENSG00000204583.10	transcript	ENST00000376608.9	protein_coding					4600		chr12	TogoVar
LRFN5_chr14_41601876_41909549	41670256	GATATATA others(29): Show GATATATATATATATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0075 a0001c0001t0002g0075	1	280	0.0036	-36	c.-19 others(57): Show c.-197+61708_-197+61743delTATATATATATATATATATATATA TATATATATATA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41781584	GAAAGAAA others(29): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAA	G G	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01167.hp2 HG01256.hp1 others(52): Show HG00741.hp2 HG01167.hp2 HG01256.hp1 HG01257.hp1 HG01358.hp2 HG01515.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG02015.hp2 HG02071.hp1 HG02132.hp1 HG02155.hp2 HG02257.hp2 HG02280.hp2 HG02293.hp1 HG02300.hp2 HG02559.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02717.hp1 HG02717.hp2 HG02895.hp2 HG02896.hp1 HG02922.hp2 HG03041.hp2 HG03139.hp2 HG03225.hp1 HG03471.hp2 HG03540.hp2 NA18612.hp2 NA18942.hp1 NA18947.hp1 NA18954.hp1 NA18959.hp2 NA18964.hp1 NA18974.hp2 NA18981.hp1 NA18983.hp1 NA18984.hp2 NA18993.hp1 NA18995.hp2 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19005.hp2 NA19010.hp2 NA19011.hp2 NA19057.hp1 NA19060.hp1 NA19240.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(8): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0018 a0001c0002t0025 a0001c0003t0004	a0001c0001t0001g0053 a0001c0001t0003g0244 a0001c0001t0003g0272 others(52): Show a0001c0001t0001g0053 a0001c0001t0003g0244 a0001c0001t0003g0272 a0001c0001t0004g0122 a0001c0001t0009g0132 a0001c0002t0001g0052 a0001c0002t0001g0101 a0001c0002t0001g0113 a0001c0002t0001g0149 a0001c0002t0001g0154 a0001c0002t0001g0177 a0001c0002t0001g0178 a0001c0002t0002g0009 a0001c0002t0003g0228 a0001c0002t0003g0229 a0001c0002t0003g0231 a0001c0002t0003g0234 a0001c0002t0003g0235 a0001c0002t0003g0237 a0001c0002t0003g0238 a0001c0002t0003g0239 a0001c0002t0003g0240 a0001c0002t0003g0242 a0001c0002t0003g0243 a0001c0002t0003g0245 a0001c0002t0003g0247 a0001c0002t0003g0248 a0001c0002t0003g0249 a0001c0002t0003g0250 a0001c0002t0003g0251 a0001c0002t0003g0252 a0001c0002t0003g0253 a0001c0002t0003g0254 a0001c0002t0003g0255 a0001c0002t0003g0256 a0001c0002t0003g0257 a0001c0002t0003g0258 a0001c0002t0003g0259 a0001c0002t0003g0260 a0001c0002t0003g0261 a0001c0002t0003g0262 a0001c0002t0003g0263 a0001c0002t0003g0264 a0001c0002t0003g0265 a0001c0002t0003g0267 a0001c0002t0004g0123 a0001c0002t0004g0136 a0001c0002t0004g0137 a0001c0002t0004g0138 a0001c0002t0004g0139 a0001c0002t0004g0153 a0001c0002t0018g0059 a0001c0002t0025g0266 a0001c0003t0004g0133 a0001c0003t0004g0135	55	280	0.1964	-36	c.-21 others(55): Show c.-21+14557_-21+14592delAAGAAAGAAAGAAAGAAAGAAAGAAA GAAAGAGAAA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41808529	TGGAGGAA others(29): Show TGGAGGAAGGAAGGGAGGGATGAAGGAAGGAAGGAAG	T T	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01358.hp1 HG01884.hp2 others(8): Show HG01261.hp1 HG01358.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02922.hp1 HG02970.hp1 HG03139.hp1 HG03195.hp2 HG03486.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0017 a0001c0001t0019	a0001c0001t0001g0053 a0001c0001t0001g0056 a0001c0001t0001g0098 others(8): Show a0001c0001t0001g0053 a0001c0001t0001g0056 a0001c0001t0001g0098 a0001c0001t0001g0201 a0001c0001t0004g0223 a0001c0001t0005g0071 a0001c0001t0005g0072 a0001c0001t0005g0082 a0001c0001t0005g0090 a0001c0001t0017g0038 a0001c0001t0019g0199	11	280	0.0393	-36	c.-21 others(55): Show c.-21+41502_-21+41537delGAGGAAGGAAGGGAGGGATGAAGGAA GGAAGGAAGG		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRMDA_chr10_75426624_76565168	76104494	CCTCCCTG others(29): Show CCTCCCTGCAGCTCTGGGTCTCCCTGCAGCTCTAGGT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp2 HG01258.hp1 others(19): Show HG00639.hp1 HG00642.hp2 HG01258.hp1 HG02145.hp2 HG02572.hp1 HG02922.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0005 others(1): Show a0001c0001 a0001c0002 a0002c0005 a0003c0003	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(15): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0012 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0008 a0001c0002t0014 a0001c0002t0015 a0001c0002t0016 a0001c0002t0019 a0002c0005t0005 a0003c0003t0009	a0001c0001t0002g0002 a0001c0001t0005g0034 a0001c0001t0007g0003 others(19): Show a0001c0001t0002g0002 a0001c0001t0005g0034 a0001c0001t0007g0003 a0001c0001t0010g0008 a0001c0001t0012g0021 a0001c0002t0001g0017 a0001c0002t0001g0044 a0001c0002t0002g0019 a0001c0002t0002g0036 a0001c0002t0003g0004 a0001c0002t0003g0013 a0001c0002t0003g0030 a0001c0002t0005g0032 a0001c0002t0006g0020 a0001c0002t0007g0007 a0001c0002t0008g0025 a0001c0002t0014g0041 a0001c0002t0015g0040 a0001c0002t0016g0043 a0001c0002t0019g0045 a0002c0005t0005g0023 a0003c0003t0009g0024	22	46	0.4783	-36	c.516 others(55): Show c.516+45744_516+45779delAGGTCTCCCTGCAGCTCTGGGTCTCC CTGCAGCTCT		LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP1B_chr2_140226423_142136016	140595087	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0006 a0001c0017t0006	a0001c0017t0006g0015 a0001c0017t0006g0015	1	28	0.0357	-36	c.719 others(55): Show c.7194+3508_7194+3543delATATATATATATATATATATATATAT ATATATATAT		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	43/90						chr2	TogoVar
LRP1B_chr2_140226423_142136016	141639388	ATACACAT others(29): Show ATACACATATATATATATGTGTATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0028 a0001c0028	a0001c0028t0002 a0001c0028t0002	a0001c0028t0002g0020 a0001c0028t0002g0020	1	28	0.0357	-36	c.206 others(57): Show c.206-158891_206-158856delAATATATATATATATACACATATA TATATATGTGTA		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90						chr2	TogoVar
LRP2_chr2_169122109_169367534	169299070	GGAAAGAA others(29): Show GGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00733.hp1 HG01070.hp2 others(25): Show HG00438.hp2 HG00733.hp1 HG01070.hp2 HG01074.hp2 HG01261.hp2 HG02056.hp1 HG02523.hp1 HG02622.hp2 HG02735.hp1 HG03490.hp1 HG03491.hp1 HG03669.hp2 HG04204.hp1 NA18522.hp2 NA18949.hp1 NA18950.hp1 NA18950.hp2 NA18956.hp1 NA18961.hp1 NA18966.hp2 NA18969.hp1 NA18999.hp1 NA19009.hp2 NA19074.hp1 NA19079.hp2 NA19084.hp1 NA20752.hp1 NA20805.hp2	a0001 a0002 a0003 others(11): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0011 a0015 a0025 a0047 a0060	a0001c0001 a0001c0090 a0001c0105 others(23): Show a0001c0001 a0001c0090 a0001c0105 a0002c0003 a0002c0034 a0002c0119 a0002c0163 a0002c0167 a0003c0023 a0004c0007 a0004c0011 a0004c0066 a0005c0160 a0006c0004 a0006c0022 a0007c0015 a0007c0145 a0008c0020 a0009c0070 a0009c0107 a0011c0054 a0011c0092 a0015c0172 a0025c0175 a0047c0164 a0060c0148	a0001c0001t0001 a0001c0090t0007 a0001c0105t0001 others(24): Show a0001c0001t0001 a0001c0090t0007 a0001c0105t0001 a0002c0003t0003 a0002c0034t0001 a0002c0119t0002 a0002c0163t0001 a0002c0167t0006 a0003c0023t0002 a0004c0007t0002 a0004c0011t0002 a0004c0066t0003 a0005c0160t0008 a0006c0004t0003 a0006c0022t0002 a0006c0022t0006 a0007c0015t0002 a0007c0145t0005 a0008c0020t0012 a0009c0070t0001 a0009c0107t0003 a0011c0054t0002 a0011c0092t0006 a0015c0172t0007 a0025c0175t0002 a0047c0164t0003 a0060c0148t0002	a0001c0001t0001g0105 a0001c0090t0007g0040 a0001c0105t0001g0244 others(25): Show a0001c0001t0001g0105 a0001c0090t0007g0040 a0001c0105t0001g0244 a0002c0003t0003g0198 a0002c0034t0001g0235 a0002c0119t0002g0172 a0002c0163t0001g0195 a0002c0167t0006g0119 a0003c0023t0002g0044 a0004c0007t0002g0166 a0004c0011t0002g0093 a0004c0066t0003g0231 a0005c0160t0008g0169 a0006c0004t0003g0043 a0006c0022t0002g0217 a0006c0022t0006g0218 a0007c0015t0002g0174 a0007c0015t0002g0186 a0007c0145t0005g0199 a0008c0020t0012g0110 a0009c0070t0001g0233 a0009c0107t0003g0109 a0011c0054t0002g0090 a0011c0092t0006g0059 a0015c0172t0007g0190 a0025c0175t0002g0052 a0047c0164t0003g0192 a0060c0148t0002g0202	28	250	0.1120	-36	c.428 others(53): Show c.428-4396_428-4361delTTTCTTTCTTTCTTTCTTTCCTTCTTTC TTTCTTTC		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	4/78						chr2	TogoVar
LRP2_chr2_169122109_169367534	169299086	GGAAAGAA others(29): Show GGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0039 a0039	a0039c0047 a0039c0047	a0039c0047t0009 a0039c0047t0009	a0039c0047t0009g0051 a0039c0047t0009g0051	1	250	0.0040	-36	c.428 others(53): Show c.428-4412_428-4377delTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTC		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	4/78						chr2	TogoVar
LRP2_chr2_169122109_169367534	169322872	GGAGGAAA others(29): Show GGAGGAAATTATCAGAACAATATATATTGCCTGTTTT	G G	intron_variant intron_variant	MODIFIER	NA18979.hp1 NA18979.hp1	a0002 a0002	a0002c0130 a0002c0130	a0002c0130t0003 a0002c0130t0003	a0002c0130t0003g0177 a0002c0130t0003g0177	1	250	0.0040	-36	c.80- others(51): Show c.80-2024_80-1989delAAAACAGGCAATATATATTGTTCTGATAAT TTCCTC		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78						chr2	TogoVar
LRRC27_chr10_132327193_132386508	132364729	CACTTACA others(29): Show CACTTACATCTACCTCCACGCCCACACTTACACTCAT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0004 a0004	a0004c0017 a0004c0017	a0004c0017t0049 a0004c0017t0049	a0004c0017t0049g0277 a0004c0017t0049g0277	1	290	0.0035	-36	c.129 others(53): Show c.1290-694_1290-659delACTTACATCTACCTCCACGCCCACACTT ACACTCAT		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10						chr10	TogoVar
LRRC37A3_chr17_64849130_64924478	64866559	CATATATA others(29): Show CATATATATATATATACATATATACACGTACATATAT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02723.hp1 HG02896.hp2 others(4): Show HG00639.hp2 HG02723.hp1 HG02896.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03453.hp2	a0002 a0003 a0011 a0002 a0003 a0011	a0002c0002 a0003c0003 a0011c0011 a0002c0002 a0003c0003 a0011c0011	a0002c0002t0002 a0003c0003t0001 a0011c0011t0003 a0002c0002t0002 a0003c0003t0001 a0011c0011t0003	a0002c0002t0002g0107 a0002c0002t0002g0108 a0002c0002t0002g0131 others(4): Show a0002c0002t0002g0107 a0002c0002t0002g0108 a0002c0002t0002g0131 a0003c0003t0001g0121 a0003c0003t0001g0124 a0003c0003t0001g0125 a0011c0011t0003g0132	7	138	0.0507	-36	c.305 others(55): Show c.3053+1867_3053+1902delATATATGTACGTGTATATATGTATAT ATATATATAT		LRRC37A3	ENSG00000176809.11	transcript	ENST00000584306.6	protein_coding	10/14						chr17	TogoVar
LRRC38_chr1_13469973_13519003	13481755	TTCTTTCC others(29): Show TTCTTTCCCTCTCTCTCCCTCTCTCCCTCTCTCCCTC	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0352 a0001c0001t0001g0352	1	448	0.0022	-36	c.632 others(53): Show c.632-5692_632-5657delGAGGGAGAGAGGGAGAGAGGGAGAGAGA GGGAAAGA		LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1						chr1	TogoVar
LRRC38_chr1_13469973_13519003	13481759	TTCCCTCT others(29): Show TTCCCTCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0290 a0002c0002t0002g0290	1	448	0.0022	-36	c.632 others(53): Show c.632-5696_632-5661delGAGAGAGGGAGAGAGGGAGAGAGGGAGA GAGAGGGA		LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1						chr1	TogoVar
LRRC3B_chr3_26617772_26715776	26636900	CTCTTTCT others(29): Show CTCTTTCTCTCTTTCTCTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0243 a0001c0001t0001g0243	1	370	0.0027	-36	c.-16 others(57): Show c.-161+13671_-161+13706delCTCTTTCTCTCTTTCTTTCTTTCT TTCTTTCTTTCT		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26636908	CTCTTTCT others(29): Show CTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02976.hp2 HG03130.hp2 HG02280.hp2 HG02976.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0242 a0001c0001t0001g0001 a0001c0001t0001g0242	3	370	0.0081	-36	c.-16 others(57): Show c.-161+13679_-161+13714delCTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCT		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3_chr21_44450510_44467196	44465320	CAGATGGG others(29): Show CAGATGGGACAGGGGCTGTGGTGTGGGGTGGCTCAAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01517.hp2 HG01517.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	426	0.0024	-36	c.79 others(47): Show c.7903_*7938delAGATGGGACAGGGGCTGTGGTGTGGGGTGGCTCA AT		LRRC3	ENSG00000160233.8	transcript	ENST00000291592.6	protein_coding					3125		chr21	TogoVar
LRRC4C_chr11_40109209_41464652	40630330	CTCTTCTT others(29): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02572.hp2 HG02622.hp2 others(6): Show HG02280.hp2 HG02572.hp2 HG02622.hp2 HG02717.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp2 NA18906.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0002c0003t0001 a0001c0001t0001 a0001c0002t0001 a0002c0003t0001	a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0015 others(6): Show a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0024 a0001c0002t0001g0030 a0002c0003t0001g0017	9	48	0.1875	-36	c.-27 others(57): Show c.-270+17776_-270+17811delAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGA		LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6						chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40987644	TATATATA others(29): Show TATATATATCTCATATATATGAGATATAAATGATATA	T T	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0030 a0001c0002t0001g0030	1	48	0.0208	-36	c.-49 others(57): Show c.-495-53957_-495-53922delTATATCATTTATATCTCATATATA TGAGATATATAT		LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6						chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41214759	ATATATAT others(29): Show ATATATATATATATATACACACATATATATATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0021 a0001c0002t0001g0021	1	48	0.0208	-36	c.-49 others(59): Show c.-496+244636_-496+244671delCACACATATATATATGTGTGTA TATATATATATATA		LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6						chr11	TogoVar
LRRC52_chr1_165539000_165568957	165560592	AATCACAT others(29): Show AATCACATGTCCTCTGAGCTCTGAGGACGGGGTGGTT	A A	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0067 a0001c0002t0002g0067	1	350	0.0029	-36	c.623 others(53): Show c.623-2912_623-2877delATCACATGTCCTCTGAGCTCTGAGGACG GGGTGGTT		LRRC52	ENSG00000162763.4	transcript	ENST00000294818.2	protein_coding	1/1						chr1	TogoVar
LRRC74B_chr22_21040946_21069168	21066164	CACCTGAA others(29): Show CACCTGAAAGCACGTGGGACCCAGGCCACACAGGTTG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	454	0.0022	-36	c.44 others(47): Show c.4491_*4526delACCTGAAAGCACGTGGGACCCAGGCCACACAGGT TG		LRRC74B	ENSG00000187905.11	transcript	ENST00000442047.3	protein_coding					1997		chr22	TogoVar
LRRC7_chr1_69562922_70149364	69608838	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA	C C	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0038 a0001c0001t0019g0038	1	108	0.0093	-36	c.2+4 others(51): Show c.2+40199_2+40234delCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT ATATAT		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608844	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03195.hp2 HG02630.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0076 a0001c0003t0074 a0001c0001t0076 a0001c0003t0074	a0001c0001t0076g0053 a0001c0003t0074g0054 a0001c0001t0076g0053 a0001c0003t0074g0054	2	108	0.0185	-36	c.2+4 others(51): Show c.2+40205_2+40240delCTCTCTCTCTCTCTCTCTCTCTATATATAT ATATAT		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69717817	AGAAAGAA others(29): Show AGAAAGAAAGAAAGAAAGAAAGAAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00738.hp2 HG01192.hp2 others(4): Show HG00621.hp1 HG00738.hp2 HG01192.hp2 HG01515.hp1 HG03130.hp1 NA18954.hp1 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0014 others(4): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0014 a0001c0001t0039 a0001c0001t0046 a0001c0001t0077 a0001c0001t0082	a0001c0001t0001g0079 a0001c0001t0007g0104 a0001c0001t0014g0085 others(4): Show a0001c0001t0001g0079 a0001c0001t0007g0104 a0001c0001t0014g0085 a0001c0001t0039g0098 a0001c0001t0046g0078 a0001c0001t0077g0055 a0001c0001t0082g0050	7	108	0.0648	-36	c.100 others(55): Show c.100+39364_100+39399delAAAGAAAGAAAGGAAAGAAAGAAAGA AAGAAAGAAA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRIQ1_chr12_85031351_85250105	85217488	ATATGTAT others(29): Show ATATGTATATATATATATATATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	228	0.0044	-36	c.482 others(57): Show c.4823-12027_4823-11992delATGTATATATATATATATATGTGT GTGTGTGTGTGT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ3_chr1_74021015_74203176	74060171	ATCTTCTT others(29): Show ATCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp1 HG03139.hp2 HG02055.hp2 HG02451.hp1 HG03139.hp2	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0004 a0006c0005t0004	a0006c0005t0004g0155 a0006c0005t0004g0157 a0006c0005t0004g0158 a0006c0005t0004g0155 a0006c0005t0004g0157 a0006c0005t0004g0158	3	274	0.0110	-36	c.997 others(55): Show c.997+14454_997+14489delAGAAGAAGAAGAAGAAGAAAAAGAAG AAGAAGAAGA		LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	6/7						chr1	TogoVar
LRRK1_chr15_100914357_101083257	100941314	CTGTGTGT others(29): Show CTGTGTGTGTGTGTCTGTGTCTCTGTGTGTGTCTTTG	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02723.hp1 HG03516.hp2 HG02055.hp1 HG02723.hp1 HG03516.hp2	a0001 a0020 a0001 a0020	a0001c0046 a0001c0055 a0020c0052 a0001c0046 a0001c0055 a0020c0052	a0001c0046t0233 a0001c0055t0247 a0020c0052t0256 a0001c0046t0233 a0001c0055t0247 a0020c0052t0256	a0001c0046t0233g0119 a0001c0055t0247g0009 a0020c0052t0256g0010 a0001c0046t0233g0119 a0001c0055t0247g0009 a0020c0052t0256g0010	3	338	0.0089	-36	c.97+ others(53): Show c.97+16599_97+16634delCTGTGTCTCTGTGTGTGTCTTTGTGTGT GTGTGTGT		LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33					INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRTM4_chr2_76742685_77527376	77457002	GTGTATAT others(29): Show GTGTATATATATATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01884.hp2 HG02145.hp2 others(14): Show HG01074.hp2 HG01884.hp2 HG02145.hp2 HG02622.hp1 HG02723.hp1 HG02818.hp1 HG02886.hp1 HG02965.hp1 HG03139.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp2 HG06807.hp2 NA18522.hp2 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0011	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0014 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0085 a0001c0001t0001g0096 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0113 a0001c0001t0002g0015 a0001c0001t0002g0024 a0001c0001t0002g0051 a0001c0001t0002g0127 a0001c0001t0003g0109 a0001c0001t0004g0027 a0001c0001t0006g0082 a0001c0001t0007g0084 a0001c0001t0011g0120	17	128	0.1328	-36	c.155 others(57): Show c.1551+61280_1551+61315delTATATATATATATATATATATATA TATATATATACA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77457016	ATATATAT others(29): Show ATATATATATATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	128	0.0078	-36	c.155 others(57): Show c.1551+61266_1551+61301delCATATATATATATATATATATATA TATATATATATA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LSAMP_chr3_115797374_116450487	115808092	TCCTTCCT others(29): Show TCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0049 a0001c0002t0049	a0001c0002t0049g0036 a0001c0002t0049g0036	1	104	0.0096	-36	c.21 others(47): Show c.2189_*2224delGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAA GG		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	7/7				2189		chr3	TogoVar
LSAMP_chr3_115797374_116450487	115861091	CTCTCTCC others(29): Show CTCTCTCCCTCTTTCCTCCCCTCCCTCCTTCCTTCTT	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01261.hp2 HG01884.hp2 others(9): Show HG00558.hp1 HG01261.hp2 HG01884.hp2 HG01891.hp2 HG02145.hp2 HG02572.hp1 HG02735.hp1 HG02818.hp2 HG03130.hp2 HG03710.hp2 NA19060.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0001t0027 a0001c0001t0034 a0001c0001t0063 a0001c0004t0016	a0001c0001t0001g0016 a0001c0001t0001g0058 a0001c0001t0001g0079 others(9): Show a0001c0001t0001g0016 a0001c0001t0001g0058 a0001c0001t0001g0079 a0001c0001t0001g0085 a0001c0001t0002g0014 a0001c0001t0002g0027 a0001c0001t0002g0094 a0001c0001t0011g0068 a0001c0001t0027g0056 a0001c0001t0034g0018 a0001c0001t0063g0096 a0001c0004t0016g0039	12	104	0.1154	-36	c.515 others(53): Show c.515-8510_515-8475delAAGAAGGAAGGAGGGAGGGGAGGAAAGA GGGAGAGA		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6						chr3	TogoVar
LSAMP_chr3_115797374_116450487	115861130	TTTCCTTC others(29): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0003 a0001c0001t0019g0003	1	104	0.0096	-36	c.515 others(53): Show c.515-8549_515-8514delGGAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAA		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6						chr3	TogoVar
LSG1_chr3_194635791_194677191	194645499	CACACACA others(29): Show CACACACACACACACACACACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03195.hp2 HG02280.hp1 HG03195.hp2	a0002 a0002	a0002c0002 a0002c0020 a0002c0002 a0002c0020	a0002c0002t0041 a0002c0020t0041 a0002c0002t0041 a0002c0020t0041	a0002c0002t0041g0373 a0002c0020t0041g0374 a0002c0002t0041g0373 a0002c0020t0041g0374	2	408	0.0049	-36	c.162 others(53): Show c.1623+629_1623+664delCTGTCTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13						chr3	TogoVar

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