Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11A_chr1_52837760_52899998	52846308	TTTTATAT others(31): Show TTTTATATATATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA18989.hp1 NA19004.hp1 NA18989.hp1 NA19004.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0002 a0006c0006t0002	a0006c0006t0002g0068 a0006c0006t0002g0072 a0006c0006t0002g0068 a0006c0006t0002g0072	2	175	0.0114	-38	c.90+ others(53): Show c.90+3337_90+3374delTTATATATATATATATATATATATATATAT ATATATAT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr1	TogoVar