Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZP4_chr1_237877404_237895922	237883975	CACACACA others(35): Show CACACACAAACACACACACACACACACACACACACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01361.hp1 HG01943.hp1 others(6): Show HG00639.hp2 HG01361.hp1 HG01943.hp1 HG02040.hp2 HG02056.hp2 HG02523.hp2 NA18970.hp2 NA19002.hp1 NA19003.hp1	a0001 a0004 a0015 a0001 a0004 a0015	a0001c0001 a0004c0004 a0015c0020 a0001c0001 a0004c0004 a0015c0020	a0001c0001t0001 a0004c0004t0001 a0015c0020t0001 a0001c0001t0001 a0004c0004t0001 a0015c0020t0001	a0001c0001t0001g0001 a0001c0001t0001g0017 a0004c0004t0001g0236 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0017 a0004c0004t0001g0236 a0004c0004t0001g0237 a0004c0004t0001g0240 a0015c0020t0001g0241	9	421	0.0214	-42	c.139 others(59): Show c.1390+752_1390+793delTTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTTTGTGTGT		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZP4_chr1_237877404_237895922	237884001	CACACACA others(35): Show CACACACACACACACAAACACACACACACACAAACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG02976.hp2 NA18948.hp2 NA18980.hp1 others(5): Show HG02976.hp2 NA18948.hp2 NA18980.hp1 NA18989.hp1 NA19011.hp2 NA19060.hp1 NA19062.hp2 NA19084.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0003c0005t0002 a0001c0001t0001 a0003c0005t0002	a0001c0001t0001g0015 a0001c0001t0001g0040 a0001c0001t0001g0094 others(3): Show a0001c0001t0001g0015 a0001c0001t0001g0040 a0001c0001t0001g0094 a0001c0001t0001g0124 a0001c0001t0001g0125 a0003c0005t0002g0250	8	419	0.0191	-42	c.139 others(59): Show c.1390+726_1390+767delTTGTGTGTGTTTGTGTGTGTGTGTGTTT GTGTGTGTGTGTGT		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZP4_chr1_237877404_237895922	237884011	CACACAAA others(35): Show CACACAAACACACACACACACAAACACACACAAACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03471.hp1 HG01884.hp1 HG03471.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0001 a0002c0003t0002 a0001c0002t0001 a0002c0003t0002	a0001c0002t0001g0073 a0002c0003t0002g0254 a0001c0002t0001g0073 a0002c0003t0002g0254	2	433	0.0046	-42	c.139 others(59): Show c.1390+716_1390+757delTTGTGTGTGTTTGTGTGTGTTTGTGTGT GTGTGTGTTTGTGT		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZRANB3_chr2_135191969_135536218	135493098	AATATATA others(35): Show AATATATATATATATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02055.hp1 HG02109.hp2 others(5): Show HG00735.hp1 HG02055.hp1 HG02109.hp2 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG03139.hp2 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0005 a0002c0003 a0001c0005 a0002c0003	a0001c0005t0004 a0001c0005t0027 a0002c0003t0003 a0001c0005t0004 a0001c0005t0027 a0002c0003t0003	a0001c0005t0004g0089 a0001c0005t0004g0090 a0001c0005t0004g0092 others(5): Show a0001c0005t0004g0089 a0001c0005t0004g0090 a0001c0005t0004g0092 a0001c0005t0004g0094 a0001c0005t0004g0098 a0001c0005t0027g0102 a0002c0003t0003g0068 a0002c0003t0003g0075	8	15	0.5333	-42	c.161 others(61): Show c.161+11189_161+11230delATATATATATATATATATATATATAT ATATATATATATATAT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20						chr2	TogoVar
	ZSWIM6_chr5_61327258_61551172	61355431	AACACACA others(35): Show AACACACACACACACACACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01975.hp1 NA18984.hp2 HG01975.hp1 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0132 a0001c0001t0002g0219 a0001c0001t0002g0132 a0001c0001t0002g0219	2	18	0.1111	-42	c.676 others(61): Show c.676+22508_676+22549delACACACACACACACACACACACACAC ACACACACACACACAC		ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr5	TogoVar
	ZYG11B_chr1_52721453_52832336	52803115	TATACACA others(35): Show TATACACACATATATATATACACACATATATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02572.hp2 HG02886.hp2 others(3): Show HG02280.hp2 HG02572.hp2 HG02886.hp2 HG03130.hp1 HG03209.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0024 a0001c0001t0005 a0001c0001t0024	a0001c0001t0005g0215 a0001c0001t0005g0216 a0001c0001t0005g0218 others(3): Show a0001c0001t0005g0215 a0001c0001t0005g0216 a0001c0001t0005g0218 a0001c0001t0005g0220 a0001c0001t0024g0223 a0001c0001t0024g0225	6	344	0.0174	-42	c.169 others(60): Show c.1695+980_1695+1021delCACACATATATATATACACACATATAT ATATATATACACATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52803131	TATACACA others(35): Show TATACACACATATATATATATATACACATATATATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0077 a0001c0001t0077	a0001c0001t0077g0340 a0001c0001t0077g0340	1	348	0.0029	-42	c.169 others(60): Show c.1695+996_1695+1037delCACACATATATATATATATACACATAT ATATATACACACATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	10/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(35): Show AATATATATATATATATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0002 a0002	a0002c0039 a0002c0039	a0002c0039t0003 a0002c0039t0003	a0002c0039t0003g0033 a0002c0039t0003g0033	1	37	0.0270	-42	c.106 others(59): Show c.1066+534_1066+575delATATATATATATATATATATATATATAT ATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar