Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LCTL_chr15_66542532_66570998	66568863	CACACACA others(41): Show CACACACACACACATATATATATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp2 HG00642.hp2 HG02976.hp1 others(5): Show HG00423.hp2 HG00642.hp2 HG02976.hp1 NA18747.hp2 NA18942.hp2 NA18943.hp2 NA18965.hp1 NA18971.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0011 a0001c0001 a0006c0011	a0001c0001t0001 a0006c0011t0001 a0001c0001t0001 a0006c0011t0001	a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0012 others(4): Show a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0096 a0001c0001t0001g0187 a0006c0011t0001g0210	8	434	0.0184	-48	c.-30 others(59): Show c.-3077_-3030delATATATATATATATATATATATATATATATATAT ATGTGTGTGTGTGT		LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding					2866		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568865	CACACACA others(41): Show CACACACACACATATATATATATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG03688.hp1 HG01243.hp2 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0122 a0001c0001t0003g0238 a0001c0001t0001g0122 a0001c0001t0003g0238	2	434	0.0046	-48	c.-30 others(59): Show c.-3079_-3032delATATATATATATATATATATATATATATATATAT ATATGTGTGTGTGT		LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding					2868		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568867	CACACACA others(41): Show CACACACACATATATATATATATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01070.hp1 HG01081.hp1 HG01070.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	2	434	0.0046	-48	c.-30 others(59): Show c.-3081_-3034delATATATATATATATATATATATATATATATATAT ATATATGTGTGTGT		LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding					2870		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568873	CACATATA others(41): Show CACATATATATATATATATATATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0188	1	434	0.0023	-48	c.-30 others(59): Show c.-3087_-3040delATATATATATATATATATATATATATATATATAT ATATATATATATGT		LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding					2876		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568881	TATATATA others(41): Show TATATATATATATATATATATATATATATATATATATATATATATATAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0161	1	434	0.0023	-48	c.-30 others(59): Show c.-3095_-3048delTTATATATATATATATATATATATATATATATAT ATATATATATATAT		LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding					2884		chr15	TogoVar
LDB2_chr4_16496541_16903645	16739614	ATATACAT others(41): Show ATATACATGTGTGTGTATATATGTATATATACATATGTGTGTATATATG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp1 NA21309.hp2 HG01891.hp1 HG02451.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0023 a0001c0001t0003g0138 a0001c0001t0003g0139 a0001c0001t0003g0023 a0001c0001t0003g0138 a0001c0001t0003g0139	3	162	0.0185	-48	c.235 others(67): Show c.235+19496_235+19543delCATATATACACACATATGTATATATA CATATATACACACACATGTATA		LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	2/7						chr4	TogoVar
LDLRAD3_chr11_35939062_36237136	36144767	CCCCCCGC others(41): Show CCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01081.hp1 HG01099.hp2 others(12): Show HG00642.hp2 HG01081.hp1 HG01099.hp2 HG02040.hp1 HG02055.hp1 HG02056.hp2 HG02145.hp1 HG02258.hp1 HG02523.hp1 HG02559.hp2 HG02630.hp1 HG02965.hp1 HG03098.hp2 HG03516.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 a0001c0002t0001	a0001c0001t0001g0055 a0001c0001t0001g0103 a0001c0001t0001g0119 others(12): Show a0001c0001t0001g0055 a0001c0001t0001g0103 a0001c0001t0001g0119 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0161 a0001c0001t0001g0210 a0001c0001t0001g0214 a0001c0001t0006g0012 a0001c0001t0009g0007 a0001c0001t0009g0042 a0001c0001t0009g0043 a0001c0002t0001g0099	15	236	0.0636	-48	c.454 others(67): Show c.454+46312_454+46359delGCCCGGCCAGCCGCCCCGTCCGGGAG GGAGGTGGGGGGGTCAGCCCCC		LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	4/5					INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36144786	CCCCGTCC others(41): Show CCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCG	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0132 a0001c0001t0002g0132	1	236	0.0042	-48	c.454 others(67): Show c.454+46377_454+46424delGTCCGGGAGGGAGGTGGGGGGGTCAG CCCCCCGCCCGGCCAGCCGCCC		LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	4/5					INFO_REALIGN_3_PRIME	chr11	TogoVar
LGALS16_chr19_39650913_39665647	39663851	TACATATA others(41): Show TACATATATATGTATGTATATATACACATATATATGTATGTATATATAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG02071.hp1 HG02109.hp1 others(13): Show HG01884.hp2 HG02071.hp1 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02280.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02895.hp1 HG02896.hp2 HG02970.hp2 HG03579.hp2 NA18969.hp1 NA19043.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0021 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0021 a0001c0001t0001g0046 a0002c0002t0001g0007	16	442	0.0362	-48	c.33 others(59): Show c.3332_*3379delACATATATATGTATGTATATATACACATATATAT GTATGTATATATAC		LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding					3205		chr19	TogoVar
LGALS4_chr19_38796674_38817945	38797811	CCCCCACC others(41): Show CCCCCACCTCCCTCCCGGACGGGGCGGCTGGCTGGGCAGGGGGCTGACT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	426	0.0024	-48	c.39 others(59): Show c.3905_*3952delAGTCAGCCCCCTGCCCAGCCAGCCGCCCCGTCCG GGAGGGAGGTGGGG		LGALS4	ENSG00000171747.9	transcript	ENST00000307751.9	protein_coding					3862		chr19	TogoVar
LGMN_chr14_92698809_92753627	92719239	ACCACCGC others(41): Show ACCACCGCCACCACCACCACCGCCACCGCCGCCGCCGCCACCGCCGCCG	A A	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0001 a0001c0014t0001	a0001c0014t0001g0043 a0001c0014t0001g0043	1	420	0.0024	-48	c.139 others(63): Show c.139-443_139-396delCGGCGGCGGTGGCGGCGGCGGCGGTGGCGG TGGTGGTGGTGGCGGTGG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LHFPL6_chr13_39337892_39608193	39352922	TAAATGTA others(41): Show TAAATGTATATATATGTGTGTATATATATATACATACATACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01261.hp2 HG01433.hp1 others(13): Show HG00438.hp2 HG01261.hp2 HG01433.hp1 HG02015.hp1 HG03490.hp2 HG03492.hp1 NA18612.hp2 NA18942.hp2 NA18949.hp1 NA18956.hp2 NA18969.hp1 NA18983.hp1 NA19066.hp1 NA19068.hp2 NA19082.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0013 a0001c0001t0015 others(1): Show a0001c0001t0004 a0001c0001t0013 a0001c0001t0015 a0001c0001t0021	a0001c0001t0004g0001 a0001c0001t0004g0045 a0001c0001t0004g0077 others(12): Show a0001c0001t0004g0001 a0001c0001t0004g0045 a0001c0001t0004g0077 a0001c0001t0004g0100 a0001c0001t0004g0119 a0001c0001t0004g0144 a0001c0001t0004g0160 a0001c0001t0004g0190 a0001c0001t0004g0194 a0001c0001t0004g0195 a0001c0001t0004g0198 a0001c0001t0013g0080 a0001c0001t0013g0094 a0001c0001t0015g0047 a0001c0001t0021g0076	16	242	0.0661	-48	c.485 others(65): Show c.485-8916_485-8869delGTGTGTGTGTATGTATGTATATATATAT ACACACATATATATACATTT		LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3						chr13	TogoVar
LHPP_chr10_124456823_124619141	124506917	GGGGTAGA others(41): Show GGGGTAGACAGGATTTCAGGTGGGGGGGTAGGGAGGATTTCAGGTGGGC	G G	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03139.hp2 HG02280.hp1 HG03139.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0004 a0003c0003t0002g0007 a0003c0003t0002g0004 a0003c0003t0002g0007	2	260	0.0077	-48	c.624 others(65): Show c.624+8811_624+8858delGGGGGGTAGGGAGGATTTCAGGTGGGCG GGTAGACAGGATTTCAGGTG		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6					INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506988	GGGGGGTA others(41): Show GGGGGGTAGGGAGGATTTCAGGTCGGGGGGTAGACAGGATTTCAGGTGA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0244 a0001c0001t0001g0244	1	260	0.0039	-48	c.624 others(65): Show c.624+8866_624+8913delTAGGGAGGATTTCAGGTCGGGGGGTAGA CAGGATTTCAGGTGAGGGGG		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6					INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507036	AGGGGGGT others(41): Show AGGGGGGTAGGGAGGATTTCAGGTGTAGGGGTAGACAGGATTTCAGGTG	A A	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0074 a0001c0001t0001g0074	1	260	0.0039	-48	c.624 others(65): Show c.624+8933_624+8980delTAGGGGTAGACAGGATTTCAGGTGGGGG GGTAGGGAGGATTTCAGGTG		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6					INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507108	GCAGGGGT others(41): Show GCAGGGGTAGACAGGATTTCAGGTCGGGGGGTTAGAGAGGATTTCAGGT	G G	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	260	0.0039	-48	c.624 others(65): Show c.624+8981_624+9028delCAGGGGTAGACAGGATTTCAGGTCGGGG GGTTAGAGAGGATTTCAGGT		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6						chr10	TogoVar
LHPP_chr10_124456823_124619141	124507623	TGTGGAGG others(41): Show TGTGGAGGGTAGACAGGATTTCAGGTGGGGGGATAGGGAGTATTTCAGG	T T	intron_variant intron_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0232 a0001c0001t0001g0232	1	260	0.0039	-48	c.624 others(65): Show c.624+9496_625-9509delGTGGAGGGTAGACAGGATTTCAGGTGGG GGGATAGGGAGTATTTCAGG		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6						chr10	TogoVar
LILRA5_chr19_54302070_54318166	54308333	GTGTATAT others(41): Show GTGTATATATATGTATATATAAATATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 NA18947.hp2 NA18951.hp2 others(4): Show HG00408.hp2 NA18947.hp2 NA18951.hp2 NA18983.hp1 NA18987.hp2 NA19002.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0024 a0001c0001t0009g0018 a0001c0001t0001g0024 a0001c0001t0009g0018	7	409	0.0171	-48	c.713 others(63): Show c.713-633_713-586delTATATATATATATATATATATATATATTTA TATATACATATATATACA		LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6						chr19	TogoVar
LILRA5_chr19_54302070_54318166	54308335	GTATATAT others(41): Show GTATATATATGTATATATAAATATATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0061 a0001c0001t0009g0061	1	409	0.0024	-48	c.713 others(63): Show c.713-635_713-588delTATATATATATATATATATATATATATATT TATATATACATATATATA		LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6						chr19	TogoVar
LIPG_chr18_49557057_49604185	49579001	GGGGAGAG others(41): Show GGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGA	G G	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0064 a0001c0001t0011g0064	1	384	0.0026	-48	c.794 others(65): Show c.794-2224_794-2177delAGAGGGAGAGGGAGAGGGAGAGGGAGAG GGAGAGGGAGAGGGAGAGGG		LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr18	TogoVar
LKAAEAR1_chr20_64078376_64089398	64088289	ATTGAGGC others(41): Show ATTGAGGCCAGGATCTCTGCATGGGGGCAGGAGTCTCTGCGGGGAGGAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	102	0.0098	-48	c.-41 others(59): Show c.-4118_-4071delGTCCTCCCCGCAGAGACTCCTGCCCCCATGCAGA GATCCTGGCCTCAA		LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding					3892		chr20	TogoVar
LLGL2_chr17_75520697_75580209	75546734	GCGGAGGG others(41): Show GCGGAGGGCAGGTCCAGCAGACAGGCGGAGGGCAGGTCCAGCAGACAGA	G G	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA19240.hp2 HG06807.hp2 NA19240.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0003 a0002c0006t0003	a0002c0006t0003g0090 a0002c0006t0003g0098 a0002c0006t0003g0090 a0002c0006t0003g0098	2	382	0.0052	-48	c.75+ others(63): Show c.75+3281_75+3328delACGGAGGGCAGGTCCAGCAGACAGGCGGAG GGCAGGTCCAGCAGACAG		LLGL2	ENSG00000073350.14	transcript	ENST00000392550.8	protein_coding	2/25					INFO_REALIGN_3_PRIME	chr17	TogoVar
LMAN2_chr5_177326567_177356668	177326837	GAAAGAAA others(41): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG02965.hp1 HG02258.hp2 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0115 a0001c0001t0003g0226 a0001c0001t0001g0115 a0001c0001t0003g0226	2	376	0.0053	-48	c.52 others(59): Show c.5201_*5248delTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4729		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326841	GAAAGAAA others(41): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG02886.hp1 HG02897.hp2 others(1): Show HG01891.hp1 HG02886.hp1 HG02897.hp2 NA18951.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0170 a0001c0001t0001g0189 a0001c0001t0001g0234 others(1): Show a0001c0001t0001g0170 a0001c0001t0001g0189 a0001c0001t0001g0234 a0001c0001t0001g0250	4	376	0.0106	-48	c.51 others(59): Show c.5197_*5244delTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCT TTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4725		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326845	GAAAGAAA others(41): Show GAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00738.hp2 HG01261.hp1 others(6): Show HG00099.hp1 HG00738.hp2 HG01261.hp1 HG02738.hp1 HG03130.hp1 HG03139.hp1 HG03654.hp2 HG03942.hp2 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0003 a0001c0001t0001 a0001c0005t0003	a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0033 others(5): Show a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0033 a0001c0001t0001g0036 a0001c0001t0001g0212 a0001c0001t0001g0235 a0001c0001t0001g0246 a0001c0005t0003g0043	9	376	0.0239	-48	c.51 others(59): Show c.5193_*5240delTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCT TTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4721		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326849	GAAAGAAA others(41): Show GAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp2 NA19063.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0193 a0001c0001t0007g0193	1	376	0.0027	-48	c.51 others(59): Show c.5189_*5236delTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCT TTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4717		chr5	TogoVar
LMAN2_chr5_177326567_177356668	177326853	GAAAGAAA others(41): Show GAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0236 a0001c0001t0003g0236	1	376	0.0027	-48	c.51 others(59): Show c.5185_*5232delTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCT TTCTTTCTTTCTTT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4713		chr5	TogoVar
LMF1_chr16_848634_975984	948856	GCCAACGA others(41): Show GCCAACGACAGAGTCAGAGCCAATGACAGAGTCAGCCAACGACAGAGTC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00423.hp1 HG01993.hp2 others(7): Show HG00140.hp2 HG00423.hp1 HG01993.hp2 HG02027.hp1 HG02056.hp2 HG03831.hp1 NA18612.hp2 NA18951.hp1 NA19003.hp2 NA19066.hp2	a0001 a0003 a0012 a0001 a0003 a0012	a0001c0005 a0003c0014 a0003c0015 others(1): Show a0001c0005 a0003c0014 a0003c0015 a0012c0031	a0001c0005t0001 a0003c0014t0001 a0003c0015t0001 others(1): Show a0001c0005t0001 a0003c0014t0001 a0003c0015t0001 a0012c0031t0001	a0001c0005t0001g0129 a0001c0005t0001g0130 a0003c0014t0001g0009 others(7): Show a0001c0005t0001g0129 a0001c0005t0001g0130 a0003c0014t0001g0009 a0003c0014t0001g0010 a0003c0014t0001g0015 a0003c0014t0001g0016 a0003c0015t0001g0011 a0003c0015t0001g0013 a0003c0015t0001g0014 a0012c0031t0001g0012	10	294	0.0340	-48	c.503 others(65): Show c.503+5453_503+5500delGACTCTGTCGTTGGCTGACTCTGTCATT GGCTCTGACTCTGTCGTTGG		LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	2/10						chr16	TogoVar
LMLN_chr3_197955217_198048720	198004514	TATCTATA others(41): Show TATCTATATATCATCTATACAGATACATATCATACGTAGTAAGTTTGAC	T T	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01257.hp2 HG01358.hp1 others(21): Show HG01074.hp2 HG01257.hp2 HG01358.hp1 HG01361.hp2 HG02155.hp1 HG02280.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02698.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp1 HG03704.hp2 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA19043.hp2 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 others(8): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 a0001c0001t0018 a0001c0001t0025 a0001c0001t0058 a0002c0002t0002 a0002c0002t0006 a0002c0002t0012 a0002c0002t0014 a0002c0002t0057	a0001c0001t0001g0082 a0001c0001t0005g0103 a0001c0001t0005g0104 others(21): Show a0001c0001t0001g0082 a0001c0001t0005g0103 a0001c0001t0005g0104 a0001c0001t0005g0125 a0001c0001t0007g0084 a0001c0001t0007g0089 a0001c0001t0018g0048 a0001c0001t0025g0129 a0001c0001t0058g0123 a0002c0002t0002g0063 a0002c0002t0002g0064 a0002c0002t0002g0065 a0002c0002t0002g0067 a0002c0002t0002g0069 a0002c0002t0002g0076 a0002c0002t0002g0078 a0002c0002t0002g0142 a0002c0002t0006g0025 a0002c0002t0012g0070 a0002c0002t0012g0071 a0002c0002t0014g0058 a0002c0002t0014g0059 a0002c0002t0014g0060 a0002c0002t0057g0027	24	258	0.0930	-48	c.131 others(67): Show c.1319+1444_1319+1491delATATCATCTATACAGATACATATCAT ACGTAGTAAGTTTGACATCTAT		LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	12/16					INFO_REALIGN_3_PRIME	chr3	TogoVar
LNP1_chr3_100396539_100461319	100431992	TTATATAT others(41): Show TTATATATATATATATATATATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02895.hp2 HG02897.hp2 others(4): Show HG02559.hp1 HG02895.hp2 HG02897.hp2 HG02976.hp2 HG03195.hp1 HG03209.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0074 a0001c0001t0005g0295 a0001c0001t0005g0296 others(4): Show a0001c0001t0005g0074 a0001c0001t0005g0295 a0001c0001t0005g0296 a0001c0001t0005g0297 a0001c0001t0005g0298 a0001c0001t0005g0299 a0001c0001t0005g0300	7	398	0.0176	-48	c.156 others(65): Show c.156+2121_156+2168delATATATATATATATATATATATATATAT ATATATATATATATATATAT		LNP1	ENSG00000206535.8	transcript	ENST00000383693.8	protein_coding	2/3					INFO_REALIGN_3_PRIME	chr3	TogoVar
LNX2_chr13_27540913_27625529	27583213	TGTGTGTG others(41): Show TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGC	T T	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0245 a0002c0002t0002g0245	1	358	0.0028	-48	c.-10 others(67): Show c.-100-1458_-100-1411delGCGCGCACACACACACACACACACAC ACACACACACACACACACACAC		LNX2	ENSG00000139517.9	transcript	ENST00000316334.5	protein_coding	1/9						chr13	TogoVar
LOC122539214_chr19_52645447_52695496	52687405	TATATAAA others(41): Show TATATAAATTATAATATAAATTATAATTTATATAGCTATATAAATTATA	T T	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0432 a0001c0001t0014g0432	1	452	0.0022	-48	c.-20 others(65): Show c.-20+2990_-20+3037delTATAATTTATATAGCTATATAAATTATA ATTTATATTATAATTTATAT		LOC122539214	ENSG00000269825.3	transcript	ENST00000598322.3	protein_coding	1/3						chr19	TogoVar
LOC400499_chr16_11367015_11532247	11463412	GTACAGAT others(41): Show GTACAGATGTATCTGTACATGGATGTGTGTGTATACAGGGGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01978.hp2	a0008 a0008	a0008c0247 a0008c0247	a0008c0247t0002 a0008c0247t0002	a0008c0247t0002g0081 a0008c0247t0002g0081	1	310	0.0032	-48	c.322 others(67): Show c.3229-1157_3229-1110delTACACACACCCCTGTATACACACACA TCCATGTACAGATACATCTGTA		LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	23/66						chr16	TogoVar
LOC647264_chr13_63827361_63838053	63832829	GCCAGAGC others(41): Show GCCAGAGCCATAGCCACAGCCATAGCTGGAGCCATAGCCACAGCCATAA	G G	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG03195.hp2 NA21309.hp1 HG03195.hp2 NA21309.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0001 a0005c0006t0001	a0005c0006t0001g0000 a0005c0006t0001g0000	2	442	0.0045	-48	c.117 others(55): Show c.117_164delTTATGGCTGTGGCTATGGCTCCAGCTATGGCTGTGGCT ATGGCTCTGG	p.Tyr others(11): Show p.Tyr40_Gly55del	LOC647264	ENSG00000285566.2	transcript	ENST00000648713.2	protein_coding	1/1	224/693	117/330	39/109			chr13	TogoVar
LPCAT1_chr5_1456427_1528960	1474951	TGAGAATT others(41): Show TGAGAATTACCAACATGTGACGTGGAGACACGAAGTGAGCTCATGGTGC	T T	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0297 a0001c0001t0002g0297	1	386	0.0026	-48	c.900 others(63): Show c.900-314_900-267delGCACCATGAGCTCACTTCGTGTCTCCACGT CACATGTTGGTAATTCTC		LPCAT1	ENSG00000153395.10	transcript	ENST00000283415.4	protein_coding	9/13						chr5	TogoVar
LRBA_chr4_150259435_151020284	150639767	ATATATAT others(41): Show ATATATATATATATATGTGTGTGTGTATATATATATATATGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19004.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0156 a0003c0004t0003g0156	1	180	0.0056	-48	c.592 others(69): Show c.5922-40684_5922-40637delCACACACACATATATATATATATA CACACACACATATATATATATATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150639771	ATATATAT others(41): Show ATATATATATATGTGTGTGTGTATATATATATATATGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02071.hp2 HG02486.hp2 others(7): Show HG01255.hp1 HG02071.hp2 HG02486.hp2 HG03041.hp1 HG03130.hp1 HG03195.hp2 NA18941.hp1 NA18978.hp2 NA18979.hp1 NA19007.hp2	a0001 a0010 a0001 a0010	a0001c0001 a0010c0024 a0001c0001 a0010c0024	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0010c0024t0002	a0001c0001t0001g0005 a0001c0001t0001g0016 a0001c0001t0001g0021 others(7): Show a0001c0001t0001g0005 a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0002g0020 a0001c0001t0002g0103 a0001c0001t0002g0106 a0001c0001t0002g0107 a0001c0001t0003g0037 a0001c0001t0005g0023 a0010c0024t0002g0042	10	180	0.0556	-48	c.592 others(69): Show c.5922-40688_5922-40641delCACACACACACACATATATATATA TATACACACACACATATATATATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRCH3_chr3_197786254_197893436	197887308	AAGCAGAG others(41): Show AAGCAGAGCCCTTCCCATCACTGACAGTGTTGGGGGTTGAGAGCCCCCC	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0062 a0001c0001t0062	a0001c0001t0062g0085 a0001c0001t0062g0085	1	292	0.0034	-48	c.36 others(59): Show c.3672_*3719delTGGGGGTTGAGAGCCCCCCAGCAGAGCCCTTCCC ATCACTGACAGTGT		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	21/21				3672	INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197887683	GGGGGCTG others(41): Show GGGGGCTGAGAGCCCCCCAGCAGAGCCCTTCCCATCACTGACAGTGTCT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00423.hp1 HG01074.hp2 HG01081.hp2 others(41): Show HG00423.hp1 HG01074.hp2 HG01081.hp2 HG01243.hp1 HG01358.hp1 HG01891.hp2 HG02109.hp2 HG02280.hp2 HG02559.hp1 HG02572.hp2 HG02602.hp2 HG02698.hp1 HG02717.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03471.hp1 HG03490.hp1 HG03492.hp2 HG03688.hp2 HG03704.hp1 HG04115.hp2 HG04228.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18943.hp2 NA18954.hp2 NA18966.hp2 NA18970.hp1 NA19003.hp2 NA19043.hp1 NA19043.hp2 NA19084.hp2 NA20752.hp2 NA20805.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0012 a0002c0003	a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 others(19): Show a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0022 a0001c0001t0054 a0001c0001t0062 a0001c0002t0010 a0001c0002t0012 a0001c0002t0025 a0001c0002t0050 a0001c0002t0052 a0001c0004t0003 a0001c0004t0006 a0001c0004t0058 a0001c0004t0061 a0001c0004t0073 a0001c0005t0048 a0001c0005t0049 a0001c0007t0003 a0001c0007t0006 a0001c0012t0012 a0002c0003t0022	a0001c0001t0010g0012 a0001c0001t0010g0015 a0001c0001t0012g0269 others(41): Show a0001c0001t0010g0012 a0001c0001t0010g0015 a0001c0001t0012g0269 a0001c0001t0014g0013 a0001c0001t0014g0166 a0001c0001t0014g0195 a0001c0001t0014g0292 a0001c0001t0022g0071 a0001c0001t0054g0158 a0001c0001t0062g0085 a0001c0002t0010g0017 a0001c0002t0010g0159 a0001c0002t0010g0177 a0001c0002t0012g0029 a0001c0002t0012g0030 a0001c0002t0025g0131 a0001c0002t0050g0226 a0001c0002t0052g0221 a0001c0004t0003g0001 a0001c0004t0003g0008 a0001c0004t0003g0053 a0001c0004t0003g0062 a0001c0004t0003g0063 a0001c0004t0003g0172 a0001c0004t0003g0176 a0001c0004t0003g0215 a0001c0004t0003g0222 a0001c0004t0003g0240 a0001c0004t0006g0031 a0001c0004t0006g0073 a0001c0004t0006g0080 a0001c0004t0006g0138 a0001c0004t0006g0268 a0001c0004t0006g0279 a0001c0004t0058g0032 a0001c0004t0061g0004 a0001c0004t0073g0257 a0001c0005t0048g0024 a0001c0005t0049g0087 a0001c0007t0003g0208 a0001c0007t0006g0161 a0001c0007t0006g0196 a0001c0012t0012g0048 a0002c0003t0022g0068	44	292	0.1507	-48	c.40 others(59): Show c.4083_*4130delAGCAGAGCCCTTCCCATCACTGACAGTGTCTGGG GCTGAGAGCCCCCC		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	21/21				4083	INFO_REALIGN_3_PRIME	chr3	TogoVar
LRIG2_chr1_113068198_113137260	113069462	GGGGGGGT others(41): Show GGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0028 a0001c0001t0004g0028	1	268	0.0037	-48	c.-39 others(59): Show c.-3944_-3897delGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCA TCCGGGAGGGAGGT		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					3735		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113069473	CCCCCCGC others(41): Show CCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0058 a0001c0001t0013g0058	1	268	0.0037	-48	c.-39 others(59): Show c.-3933_-3886delCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGA GGTGGGGGGGTCAG		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					3724		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070041	GGGGGGGT others(41): Show GGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp1 HG02572.hp1 HG01099.hp1 HG02572.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0015 a0001c0001 a0008c0015	a0001c0001t0001 a0008c0015t0097 a0001c0001t0001 a0008c0015t0097	a0001c0001t0001g0073 a0008c0015t0097g0114 a0001c0001t0001g0073 a0008c0015t0097g0114	2	268	0.0075	-48	c.-33 others(59): Show c.-3365_-3318delGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCG TCCGGGAGGGAGGT		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					3156		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070052	CCCCCCGC others(41): Show CCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG01433.hp2 HG02056.hp2 others(4): Show HG00544.hp1 HG01433.hp2 HG02056.hp2 HG02293.hp2 HG03831.hp1 HG04184.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 a0001c0001t0030 a0001c0001t0043	a0001c0001t0001g0015 a0001c0001t0001g0030 a0001c0001t0001g0040 others(4): Show a0001c0001t0001g0015 a0001c0001t0001g0030 a0001c0001t0001g0040 a0001c0001t0004g0022 a0001c0001t0013g0058 a0001c0001t0030g0012 a0001c0001t0043g0108	7	268	0.0261	-48	c.-33 others(59): Show c.-3354_-3307delCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGA GGTGGGGGGGTCGG		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					3145		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070059	CCCGGCCA others(41): Show CCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0081 a0001c0001t0023g0081	1	268	0.0037	-48	c.-33 others(59): Show c.-3347_-3300delCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG GGGTCGGCCCCCCG		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					3138		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070410	GGGGGGTC others(41): Show GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0091 a0001c0001t0006g0091	1	268	0.0037	-48	c.-29 others(59): Show c.-2996_-2949delGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT CCGGGAGGGAGGTT		LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding					2787		chr1	TogoVar
LRP2_chr2_169122109_169367534	169299070	GGAAAGAA others(41): Show GGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02683.hp2 NA18522.hp1 HG01106.hp2 HG02683.hp2 NA18522.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0117 a0003c0058 a0001c0002 a0002c0117 a0003c0058	a0001c0002t0001 a0002c0117t0001 a0003c0058t0019 a0001c0002t0001 a0002c0117t0001 a0003c0058t0019	a0001c0002t0001g0067 a0002c0117t0001g0171 a0003c0058t0019g0210 a0001c0002t0001g0067 a0002c0117t0001g0171 a0003c0058t0019g0210	3	250	0.0120	-48	c.428 others(65): Show c.428-4408_428-4361delTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCCTTCTTTCTTTCTTTC		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	4/78						chr2	TogoVar
LRPAP1_chr4_3498612_3537422	3511745	CCCGGACC others(41): Show CCCGGACCCGAGCCTCTTCCAGGCTCAGACACGGGAACCACGCCCAGAG	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0149 a0001c0001t0149	a0001c0001t0149g0067 a0001c0001t0149g0067	1	420	0.0024	-48	c.11 others(59): Show c.1181_*1228delCTCTGGGCGTGGTTCCCGTGTCTGAGCCTGGAAG AGGCTCGGGTCCGG		LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding	8/8				1181		chr4	TogoVar
LRRC27_chr10_132327193_132386508	132374132	TTATGGCT others(41): Show TTATGGCTGCATGGTGAGGGGGTGCAGTGGCTCCAGGGACCTGCTGTGA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01070.hp2 HG01106.hp2 others(2): Show HG00140.hp2 HG01070.hp2 HG01106.hp2 HG04228.hp2 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0054 a0001c0002t0016 a0002c0004t0010 others(1): Show a0001c0001t0054 a0001c0002t0016 a0002c0004t0010 a0002c0004t0022	a0001c0001t0054g0019 a0001c0002t0016g0247 a0002c0004t0010g0014 others(2): Show a0001c0001t0054g0019 a0001c0002t0016g0247 a0002c0004t0010g0014 a0002c0004t0010g0017 a0002c0004t0022g0012	5	290	0.0172	-48	c.141 others(65): Show c.1417-884_1417-837delATGGCTGCATGGTGAGGGGGTGCAGTGG CTCCAGGGACCTGCTGTGAT		LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	10/10					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC3B_chr3_26617772_26715776	26636932	TTCTTTCT others(41): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00558.hp2 HG00673.hp2 others(44): Show HG00544.hp2 HG00558.hp2 HG00673.hp2 HG01192.hp1 HG01256.hp2 HG02027.hp2 HG02040.hp2 HG02056.hp2 HG02080.hp1 HG02109.hp2 HG02129.hp2 HG02165.hp1 HG02622.hp2 HG02717.hp1 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG03017.hp1 HG03195.hp1 HG03579.hp2 HG03834.hp2 HG03942.hp1 HG04199.hp2 NA18939.hp2 NA18942.hp1 NA18952.hp2 NA18955.hp2 NA18956.hp1 NA18957.hp1 NA18963.hp1 NA18964.hp1 NA18967.hp1 NA18971.hp1 NA18972.hp2 NA18977.hp2 NA18990.hp1 NA18992.hp2 NA18994.hp1 NA19000.hp1 NA19009.hp2 NA19060.hp1 NA19064.hp1 NA19070.hp2 NA19083.hp1 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 a0001c0001t0001 a0001c0001t0002 a0001c0002t0002	a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0087 others(44): Show a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0087 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0210 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0132 a0001c0001t0002g0135 a0001c0001t0002g0211 a0001c0002t0002g0138	47	370	0.1270	-48	c.-16 others(69): Show c.-161+13699_-161+13746delTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCTCTCTCTCT		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3_chr21_44450510_44467196	44465503	TTCTCCCT others(41): Show TTCTCCCTGTACACACACACTCTCCCTGTACACACACACACATGCTCAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0001 a0001c0001t0057g0001	1	426	0.0024	-48	c.80 others(59): Show c.8086_*8133delTCTCCCTGTACACACACACTCTCCCTGTACACAC ACACACATGCTCAC		LRRC3	ENSG00000160233.8	transcript	ENST00000291592.6	protein_coding					3308		chr21	TogoVar

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