Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN1_chr12_40687439_41077415	40920336	AGCTTT AGCTTT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp1 others(43): Show HG00140.hp2 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG01070.hp1 HG01123.hp1 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01981.hp1 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02818.hp2 HG03130.hp2 HG03239.hp1 HG03704.hp1 HG03834.hp1 HG03927.hp1 HG04115.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18943.hp1 NA18944.hp2 NA18950.hp1 NA18953.hp2 NA18957.hp2 NA18959.hp1 NA18970.hp1 NA18974.hp2 NA18984.hp2 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19012.hp1 NA19062.hp1 NA19079.hp1 NA19083.hp2 NA19090.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0005c0010 a0001c0001 a0001c0002 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0018 a0001c0002t0001 a0005c0010t0002	a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 others(43): Show a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0101 a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0003g0010 a0001c0001t0003g0120 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0013g0211 a0001c0001t0018g0048 a0001c0002t0001g0025 a0001c0002t0001g0090 a0005c0010t0002g0026	46	230	0.2000	-5	c.227 others(22): Show c.227+1573_227+1577delTTTGC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40952579	TTATAG TTATAG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01069.hp2 HG01255.hp1 others(3): Show HG00099.hp1 HG01069.hp2 HG01255.hp1 HG02273.hp1 HG03704.hp2 NA21309.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0006 a0001c0006t0006	a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 others(3): Show a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0006t0006g0051 a0001c0006t0006g0119	6	230	0.0261	-5	c.168 others(24): Show c.1684-6532_1684-6528delTAGTA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40977764	CTGTTT CTGTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(71): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00323.hp2 HG00621.hp2 HG00642.hp2 HG00673.hp2 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01258.hp2 HG01433.hp2 HG02004.hp2 HG02027.hp2 HG02071.hp2 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02280.hp2 HG02300.hp2 HG02486.hp2 HG02559.hp2 HG02622.hp2 HG02717.hp2 HG02895.hp1 HG02976.hp2 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp2 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03704.hp2 NA18522.hp1 NA18943.hp2 NA18944.hp1 NA18950.hp2 NA18970.hp2 NA18973.hp2 NA18974.hp1 NA18980.hp2 NA18983.hp1 NA18984.hp1 NA18988.hp2 NA18989.hp1 NA19010.hp2 NA19011.hp1 NA19012.hp2 NA19062.hp2 NA19065.hp1 NA19066.hp2 NA19083.hp1 NA19083.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0013 a0001c0001t0017 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0010 a0001c0002t0022 a0001c0002t0023 a0001c0002t0027 a0001c0005t0002 a0001c0005t0007 a0001c0006t0006 a0001c0013t0001	a0001c0001t0001g0063 a0001c0001t0001g0105 a0001c0001t0001g0212 others(71): Show a0001c0001t0001g0063 a0001c0001t0001g0105 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0002g0059 a0001c0001t0002g0067 a0001c0001t0007g0006 a0001c0001t0007g0058 a0001c0001t0013g0211 a0001c0001t0017g0187 a0001c0002t0001g0001 a0001c0002t0001g0013 a0001c0002t0001g0014 a0001c0002t0001g0024 a0001c0002t0001g0028 a0001c0002t0001g0033 a0001c0002t0001g0034 a0001c0002t0001g0035 a0001c0002t0001g0036 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0047 a0001c0002t0001g0085 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0092 a0001c0002t0001g0102 a0001c0002t0001g0103 a0001c0002t0001g0109 a0001c0002t0001g0112 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0129 a0001c0002t0001g0132 a0001c0002t0001g0136 a0001c0002t0001g0142 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0149 a0001c0002t0001g0156 a0001c0002t0001g0157 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0163 a0001c0002t0001g0169 a0001c0002t0001g0174 a0001c0002t0001g0189 a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0002t0001g0203 a0001c0002t0001g0205 a0001c0002t0001g0215 a0001c0002t0002g0221 a0001c0002t0003g0060 a0001c0002t0010g0127 a0001c0002t0022g0172 a0001c0002t0023g0144 a0001c0002t0027g0041 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0001c0005t0002g0207 a0001c0005t0007g0148 a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0006t0006g0119 a0001c0013t0001g0050	74	230	0.3217	-5	c.180 others(24): Show c.1805-3092_1805-3088delTTTTG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40984002	ATATAT ATATAT	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(19): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG01099.hp1 HG01106.hp2 HG01346.hp2 HG01361.hp1 HG02055.hp1 HG02280.hp1 HG02300.hp1 HG02572.hp2 HG02717.hp1 HG03041.hp2 HG03834.hp2 NA18957.hp1 NA18959.hp2 NA18977.hp2 NA18988.hp1 NA19043.hp1 NA20129.hp2 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0003c0008 a0001c0002 a0001c0003 a0003c0008	a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 others(6): Show a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0019 a0001c0003t0020 a0003c0008t0002	a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 others(19): Show a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0019g0056 a0001c0003t0020g0165 a0003c0008t0002g0143	22	230	0.0957	-5	c.196 others(24): Show c.1963+2939_1963+2943delATTAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	16/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41002107	CTTTTA CTTTTA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(16): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG01099.hp1 HG01106.hp2 HG01346.hp2 HG01361.hp1 HG02055.hp1 HG02280.hp1 HG02300.hp1 HG02717.hp1 HG03579.hp1 HG03834.hp2 NA18957.hp1 NA18959.hp2 NA18977.hp2 NA18988.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0003c0008 a0001c0002 a0001c0003 a0003c0008	a0001c0002t0003 a0001c0002t0005 a0001c0003t0002 others(6): Show a0001c0002t0003 a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0019 a0001c0003t0020 a0003c0008t0002	a0001c0002t0003g0060 a0001c0002t0005g0098 a0001c0003t0002g0108 others(16): Show a0001c0002t0003g0060 a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0019g0056 a0001c0003t0020g0165 a0003c0008t0002g0143	19	230	0.0826	-5	c.211 others(24): Show c.2113+8853_2113+8857delATTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41007045	GTTTTT GTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01123.hp2 HG02055.hp2 others(11): Show HG00738.hp2 HG01123.hp2 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02257.hp1 HG02486.hp1 HG02886.hp2 HG02895.hp1 HG03540.hp1 HG03834.hp1 NA18522.hp2 NA18906.hp1 NA18964.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0007 a0001c0001 a0001c0005 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 a0001c0001t0026 a0001c0005t0002 a0002c0007t0008	a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0002g0011 others(11): Show a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0002g0011 a0001c0001t0003g0010 a0001c0001t0003g0120 a0001c0001t0003g0200 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0014g0074 a0001c0001t0026g0190 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0002c0007t0008g0122	14	230	0.0609	-5	c.211 others(24): Show c.2114-7155_2114-7151delTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41033495	TCTTTA TCTTTA	T T	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03516.hp1 NA18906.hp2 HG00741.hp1 HG03516.hp1 NA18906.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0025 a0001c0005t0002 a0001c0005t0025	a0001c0005t0002g0053 a0001c0005t0002g0210 a0001c0005t0025g0052 a0001c0005t0002g0053 a0001c0005t0002g0210 a0001c0005t0025g0052	3	230	0.0130	-5	c.298 others(24): Show c.2980+4281_2980+4285delACTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41056886	AATATT AATATT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00673.hp1 HG00735.hp1 others(26): Show HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp2 HG01109.hp1 HG01109.hp2 HG01884.hp1 HG02004.hp1 HG02055.hp2 HG02148.hp1 HG02257.hp1 HG02615.hp2 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03139.hp1 HG03654.hp1 HG03927.hp2 NA18747.hp2 NA18952.hp1 NA18961.hp2 NA18964.hp1 NA18972.hp1 NA18973.hp1 NA18977.hp1 NA18980.hp1 NA18989.hp2 NA19011.hp2 NA19066.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0007 a0001c0001 a0002c0007	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0002c0007t0008	a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 others(26): Show a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0107 a0001c0001t0001g0160 a0001c0001t0001g0201 a0001c0001t0001g0218 a0001c0001t0001g0228 a0001c0001t0004g0029 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0184 a0001c0001t0004g0216 a0001c0001t0004g0225 a0001c0001t0006g0106 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	29	230	0.1261	-5	c.298 others(26): Show c.2981-13067_2981-13063delATATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41058744	CCAAGG CCAAGG	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01109.hp2 HG02818.hp1 others(2): Show HG00738.hp2 HG01109.hp2 HG02818.hp1 HG02886.hp1 HG02976.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0008 a0002c0007t0008	a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 others(2): Show a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	5	230	0.0217	-5	c.298 others(26): Show c.2981-11214_2981-11210delCAAGG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23			chr12	TogoVar
CNTN3_chr3_74257568_74619659	74327105	CCTTTT CCTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02735.hp1 HG03017.hp2 others(4): Show HG00438.hp2 HG02735.hp1 HG03017.hp2 HG03669.hp1 NA18956.hp2 NA19085.hp2 NA20752.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0011c0020	a0001c0001t0001 a0001c0002t0020 a0001c0006t0001 others(2): Show a0001c0001t0001 a0001c0002t0020 a0001c0006t0001 a0001c0006t0006 a0011c0020t0003	a0001c0001t0001g0111 a0001c0001t0001g0140 a0001c0002t0020g0007 others(4): Show a0001c0001t0001g0111 a0001c0001t0001g0140 a0001c0002t0020g0007 a0001c0006t0001g0142 a0001c0006t0006g0150 a0001c0006t0006g0159 a0011c0020t0003g0026	7	174	0.0402	-5	c.166 others(24): Show c.1668+7625_1668+7629delAAAAG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	13/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74348227	AGATAT AGATAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02451.hp2 HG02486.hp1 others(9): Show HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02622.hp1 HG02647.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG03486.hp2 HG03540.hp1 NA19043.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0004 a0002c0005 others(3): Show a0001c0002 a0002c0004 a0002c0005 a0002c0015 a0003c0003 a0003c0007	a0001c0002t0019 a0002c0004t0028 a0002c0005t0002 others(5): Show a0001c0002t0019 a0002c0004t0028 a0002c0005t0002 a0002c0015t0013 a0003c0003t0002 a0003c0003t0007 a0003c0003t0024 a0003c0007t0007	a0001c0002t0019g0002 a0002c0004t0028g0137 a0002c0005t0002g0037 others(9): Show a0001c0002t0019g0002 a0002c0004t0028g0137 a0002c0005t0002g0037 a0002c0005t0002g0066 a0002c0015t0013g0019 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0007g0020 a0003c0003t0007g0074 a0003c0003t0024g0075 a0003c0007t0007g0073	12	174	0.0690	-5	c.136 others(26): Show c.1365-11574_1365-11570delATATC	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74367472	GTCTAA GTCTAA	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01255.hp1 HG01884.hp1 others(11): Show HG01109.hp2 HG01255.hp1 HG01884.hp1 HG01952.hp1 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02486.hp1 HG02559.hp2 HG02615.hp2 HG02896.hp1 HG03098.hp1 NA18906.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0002c0015 a0001c0001 a0002c0005 a0002c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0009 a0001c0001t0014 a0001c0001t0022 a0002c0005t0002 a0002c0005t0006 a0002c0015t0013	a0001c0001t0001g0099 a0001c0001t0002g0069 a0001c0001t0002g0072 others(11): Show a0001c0001t0001g0099 a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 a0001c0001t0003g0029 a0001c0001t0008g0001 a0001c0001t0009g0084 a0001c0001t0009g0086 a0001c0001t0014g0051 a0001c0001t0022g0013 a0002c0005t0002g0037 a0002c0005t0002g0066 a0002c0005t0006g0160 a0002c0015t0013g0019	14	174	0.0805	-5	c.946 others(22): Show c.946+1712_946+1716delTTAGA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74567314	ATTTTT ATTTTT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00609.hp2 HG01109.hp2 others(33): Show HG00323.hp2 HG00609.hp2 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01257.hp2 HG01261.hp2 HG01346.hp1 HG01884.hp1 HG01943.hp1 HG02145.hp2 HG02257.hp1 HG02258.hp1 HG02293.hp1 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02735.hp2 HG02922.hp1 HG02965.hp2 HG03017.hp1 HG03098.hp1 HG03139.hp1 HG03209.hp2 HG03579.hp2 HG03710.hp1 HG04184.hp2 HG04199.hp2 NA18906.hp2 NA18956.hp1 NA18977.hp2 NA18981.hp1 NA20129.hp2 NA20752.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0006 a0010 a0011	a0001c0001 a0001c0002 a0001c0008 others(7): Show a0001c0001 a0001c0002 a0001c0008 a0001c0009 a0001c0010 a0002c0004 a0003c0026 a0006c0024 a0010c0013 a0011c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(22): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0010 a0001c0002t0012 a0001c0002t0018 a0001c0002t0019 a0001c0008t0015 a0001c0009t0002 a0001c0010t0003 a0002c0004t0028 a0003c0026t0010 a0006c0024t0002 a0010c0013t0003 a0011c0020t0003	a0001c0001t0001g0110 a0001c0001t0001g0118 a0001c0001t0001g0133 others(33): Show a0001c0001t0001g0110 a0001c0001t0001g0118 a0001c0001t0001g0133 a0001c0001t0002g0046 a0001c0001t0003g0023 a0001c0001t0003g0024 a0001c0001t0003g0029 a0001c0001t0004g0092 a0001c0001t0004g0138 a0001c0001t0008g0001 a0001c0001t0008g0003 a0001c0001t0009g0084 a0001c0001t0009g0086 a0001c0001t0011g0008 a0001c0001t0011g0009 a0001c0001t0014g0051 a0001c0001t0018g0173 a0001c0002t0001g0091 a0001c0002t0001g0107 a0001c0002t0001g0132 a0001c0002t0002g0044 a0001c0002t0003g0028 a0001c0002t0003g0047 a0001c0002t0004g0100 a0001c0002t0010g0004 a0001c0002t0012g0011 a0001c0002t0018g0174 a0001c0002t0019g0002 a0001c0008t0015g0030 a0001c0009t0002g0031 a0001c0010t0003g0025 a0002c0004t0028g0137 a0003c0026t0010g0005 a0006c0024t0002g0054 a0010c0013t0003g0027 a0011c0020t0003g0026	36	174	0.2069	-5	c.-80 others(24): Show c.-80-46127_-80-46123delAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74601054	TATATA TATATA	T T	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02015.hp2 HG00597.hp1 HG02015.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0004 a0001c0002 a0002c0004	a0001c0002t0002 a0002c0004t0001 a0001c0002t0002 a0002c0004t0001	a0001c0002t0002g0056 a0002c0004t0001g0089 a0001c0002t0002g0056 a0002c0004t0001g0089	2	174	0.0115	-5	c.-81 others(24): Show c.-81+13332_-81+13336delTATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2117839	ATTTAT ATTTAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01884.hp1 HG00642.hp1 HG01884.hp1	a0001 a0001	a0001c0005 a0001c0025 a0001c0005 a0001c0025	a0001c0005t0001 a0001c0025t0001 a0001c0005t0001 a0001c0025t0001	a0001c0005t0001g0096 a0001c0025t0001g0100 a0001c0005t0001g0096 a0001c0025t0001g0100	2	116	0.0172	-5	c.-14 others(26): Show c.-145+17203_-145+17207delTATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2253424	GAACGA GAACGA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01169.hp1 HG01175.hp2 others(14): Show HG00140.hp2 HG01169.hp1 HG01175.hp2 HG01884.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02622.hp2 HG02738.hp1 HG02809.hp1 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0024 a0003c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0002t0001 a0001c0002t0005 a0001c0003t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0010 a0001c0006t0004 a0001c0024t0015 a0003c0008t0001	a0001c0001t0001g0033 a0001c0001t0002g0028 a0001c0001t0003g0058 others(14): Show a0001c0001t0001g0033 a0001c0001t0002g0028 a0001c0001t0003g0058 a0001c0001t0004g0042 a0001c0001t0004g0081 a0001c0001t0009g0052 a0001c0002t0001g0038 a0001c0002t0001g0110 a0001c0002t0005g0003 a0001c0003t0006g0040 a0001c0005t0001g0104 a0001c0005t0006g0010 a0001c0005t0010g0001 a0001c0005t0010g0085 a0001c0006t0004g0004 a0001c0024t0015g0057 a0003c0008t0001g0084	17	116	0.1466	-5	c.-14 others(26): Show c.-144-85750_-144-85746delGAAAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2260693	GTTTTC GTTTTC	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp1 HG02451.hp1 HG02486.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0009c0027 a0001c0001 a0009c0027	a0001c0001t0003 a0009c0027t0001 a0001c0001t0003 a0009c0027t0001	a0001c0001t0003g0008 a0009c0027t0001g0007 a0001c0001t0003g0008 a0009c0027t0001g0007	2	116	0.0172	-5	c.-14 others(26): Show c.-144-78465_-144-78461delCTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2286894	CAAATG CAAATG	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG06807.hp1 HG02258.hp1 HG06807.hp1	a0001 a0001	a0001c0006 a0001c0021 a0001c0006 a0001c0021	a0001c0006t0002 a0001c0021t0002 a0001c0006t0002 a0001c0021t0002	a0001c0006t0002g0026 a0001c0021t0002g0025 a0001c0006t0002g0026 a0001c0021t0002g0025	2	116	0.0172	-5	c.-14 others(26): Show c.-144-52283_-144-52279delAAATG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2291713	ATATTT ATATTT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02559.hp2 NA18906.hp2 HG01243.hp2 HG02559.hp2 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0001c0006 a0005c0012 a0001c0002 a0001c0006 a0005c0012	a0001c0002t0002 a0001c0006t0002 a0005c0012t0009 a0001c0002t0002 a0001c0006t0002 a0005c0012t0009	a0001c0002t0002g0102 a0001c0006t0002g0051 a0005c0012t0009g0093 a0001c0002t0002g0102 a0001c0006t0002g0051 a0005c0012t0009g0093	3	116	0.0259	-5	c.-14 others(26): Show c.-144-47444_-144-47440delTATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2292623	TTAGAG TTAGAG	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp2 HG00642.hp1 others(25): Show HG00140.hp1 HG00639.hp2 HG00642.hp1 HG00738.hp1 HG00738.hp2 HG01175.hp2 HG01243.hp2 HG01256.hp2 HG01257.hp1 HG01261.hp1 HG01891.hp1 HG02074.hp2 HG02165.hp2 HG02257.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp2 HG02647.hp1 HG02818.hp1 HG02897.hp1 HG03139.hp1 HG03209.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03831.hp2 NA18906.hp2 NA19043.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0005 a0007	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0023 a0002c0017 a0003c0008 a0005c0012 a0007c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0006 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0016 a0001c0023t0004 a0002c0017t0008 a0003c0008t0013 a0005c0012t0009 a0007c0018t0003	a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0002g0055 others(25): Show a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0002g0055 a0001c0001t0002g0086 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0001t0008g0089 a0001c0002t0001g0027 a0001c0002t0001g0029 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0005g0002 a0001c0002t0007g0112 a0001c0003t0001g0037 a0001c0003t0002g0061 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0001g0106 a0001c0004t0002g0076 a0001c0005t0001g0096 a0001c0006t0002g0051 a0001c0006t0004g0004 a0001c0007t0016g0105 a0001c0023t0004g0041 a0002c0017t0008g0067 a0003c0008t0013g0109 a0005c0012t0009g0093 a0007c0018t0003g0062	28	116	0.2414	-5	c.-14 others(26): Show c.-144-46552_-144-46548delGAGTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2338629	ATAAAT ATAAAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00738.hp2 HG01257.hp1 others(8): Show HG00642.hp1 HG00738.hp2 HG01257.hp1 HG01891.hp1 HG02647.hp1 HG03041.hp1 HG03139.hp1 HG03209.hp1 HG03239.hp2 HG03486.hp1 NA19043.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0006 a0001c0023 a0003c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0002t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0004 a0001c0023t0004 a0003c0008t0013	a0001c0001t0001g0033 a0001c0001t0001g0059 a0001c0001t0002g0086 others(8): Show a0001c0001t0001g0033 a0001c0001t0001g0059 a0001c0001t0002g0086 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0002t0001g0029 a0001c0004t0001g0106 a0001c0005t0001g0096 a0001c0006t0004g0004 a0001c0023t0004g0041 a0003c0008t0013g0109	11	116	0.0948	-5	c.-14 others(22): Show c.-144-547_-144-543delAAATT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2478408	GTTTTT GTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01891.hp1 HG02451.hp1 others(16): Show HG00438.hp1 HG01891.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02886.hp1 HG02965.hp2 HG03041.hp2 HG03239.hp1 HG03516.hp1 HG06807.hp1 NA18990.hp2 NA19043.hp1 NA19043.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0021 a0009c0027	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 a0001c0003t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0009 a0001c0005t0010 a0001c0021t0002 a0009c0027t0001	a0001c0001t0001g0059 a0001c0001t0002g0074 a0001c0001t0002g0086 others(16): Show a0001c0001t0001g0059 a0001c0001t0002g0074 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0003g0095 a0001c0001t0004g0081 a0001c0002t0001g0029 a0001c0002t0001g0110 a0001c0003t0001g0075 a0001c0004t0002g0064 a0001c0004t0002g0076 a0001c0004t0006g0068 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0001g0104 a0001c0005t0009g0091 a0001c0005t0010g0001 a0001c0021t0002g0025 a0009c0027t0001g0007	19	116	0.1638	-5	c.-88 others(24): Show c.-88-93000_-88-92996delTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2483031	TTGTAC TTGTAC	T T	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02257.hp2 HG02559.hp2 others(6): Show HG01243.hp2 HG02257.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp2 HG02647.hp2 HG02717.hp1 HG02886.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0001c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 a0001c0006t0002 a0001c0010t0003	a0001c0001t0002g0030 a0001c0001t0003g0101 a0001c0001t0008g0089 others(6): Show a0001c0001t0002g0030 a0001c0001t0003g0101 a0001c0001t0008g0089 a0001c0002t0002g0102 a0001c0002t0005g0002 a0001c0002t0005g0003 a0001c0002t0007g0009 a0001c0006t0002g0051 a0001c0010t0003g0011	9	116	0.0776	-5	c.-88 others(24): Show c.-88-88381_-88-88377delACTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2520259	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02647.hp1 HG02886.hp1 others(1): Show HG01361.hp2 HG02647.hp1 HG02886.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0002t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0004 a0001c0005t0009	a0001c0001t0001g0059 a0001c0001t0003g0095 a0001c0002t0004g0017 others(1): Show a0001c0001t0001g0059 a0001c0001t0003g0095 a0001c0002t0004g0017 a0001c0005t0009g0091	4	116	0.0345	-5	c.-88 others(24): Show c.-88-51130_-88-51126delTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2575806	CTTCTT CTTCTT	C C	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02486.hp2 HG02572.hp2 others(2): Show HG02132.hp1 HG02486.hp2 HG02572.hp2 HG02809.hp2 HG03540.hp2	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0001c0002 a0003c0019 others(1): Show a0001c0001 a0001c0002 a0003c0019 a0007c0018	a0001c0001t0001 a0001c0002t0005 a0001c0002t0007 others(2): Show a0001c0001t0001 a0001c0002t0005 a0001c0002t0007 a0003c0019t0002 a0007c0018t0003	a0001c0001t0001g0012 a0001c0002t0005g0003 a0001c0002t0007g0087 others(2): Show a0001c0001t0001g0012 a0001c0002t0005g0003 a0001c0002t0007g0087 a0003c0019t0002g0031 a0007c0018t0003g0062	5	116	0.0431	-5	c.55+ others(20): Show c.55+4251_55+4255delCTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2591352	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02738.hp2 HG03486.hp2 others(1): Show HG01978.hp2 HG02738.hp2 HG03486.hp2 HG03927.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0024 a0001c0002 a0001c0003 a0001c0024	a0001c0002t0002 a0001c0003t0002 a0001c0024t0015 a0001c0002t0002 a0001c0003t0002 a0001c0024t0015	a0001c0002t0002g0035 a0001c0003t0002g0072 a0001c0003t0002g0073 others(1): Show a0001c0002t0002g0035 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0024t0015g0057	4	116	0.0345	-5	c.55+ others(22): Show c.55+19820_55+19824delTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2604234	GCTAAT GCTAAT	G G	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02622.hp2 HG03130.hp1 HG02572.hp1 HG02622.hp2 HG03130.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0016 a0003c0008 a0001c0002 a0002c0016 a0003c0008	a0001c0002t0001 a0002c0016t0003 a0003c0008t0001 a0001c0002t0001 a0002c0016t0003 a0003c0008t0001	a0001c0002t0001g0110 a0002c0016t0003g0079 a0003c0008t0001g0084 a0001c0002t0001g0110 a0002c0016t0003g0079 a0003c0008t0001g0084	3	116	0.0259	-5	c.55+ others(22): Show c.55+32679_55+32683delAATCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2610150	CTATTT CTATTT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02572.hp1 HG02622.hp2 others(2): Show HG01243.hp1 HG02572.hp1 HG02622.hp2 HG02886.hp2 HG03130.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0016 others(1): Show a0001c0001 a0001c0002 a0002c0016 a0003c0008	a0001c0001t0002 a0001c0001t0008 a0001c0002t0001 others(2): Show a0001c0001t0002 a0001c0001t0008 a0001c0002t0001 a0002c0016t0003 a0003c0008t0001	a0001c0001t0002g0030 a0001c0001t0008g0053 a0001c0002t0001g0110 others(2): Show a0001c0001t0002g0030 a0001c0001t0008g0053 a0001c0002t0001g0110 a0002c0016t0003g0079 a0003c0008t0001g0084	5	116	0.0431	-5	c.55+ others(22): Show c.55+38599_55+38603delATTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2750223	CTAATT CTAATT	C C	intron_variant intron_variant	MODIFIER	HG03453.hp2 NA18906.hp2 HG03453.hp2 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0006 a0005c0012 a0001c0006 a0005c0012	a0001c0006t0002 a0005c0012t0009 a0001c0006t0002 a0005c0012t0009	a0001c0006t0002g0060 a0005c0012t0009g0093 a0001c0006t0002g0060 a0005c0012t0009g0093	2	116	0.0172	-5	c.358 others(22): Show c.358+4529_358+4533delATTTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2754817	GTTAAT GTTAAT	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02559.hp1 HG02572.hp1 others(2): Show HG02451.hp1 HG02559.hp1 HG02572.hp1 HG03471.hp2 HG03516.hp1	a0001 a0009 a0001 a0009	a0001c0002 a0001c0005 a0009c0027 a0001c0002 a0001c0005 a0009c0027	a0001c0002t0001 a0001c0005t0001 a0009c0027t0001 a0001c0002t0001 a0001c0005t0001 a0009c0027t0001	a0001c0002t0001g0021 a0001c0002t0001g0110 a0001c0005t0001g0090 others(2): Show a0001c0002t0001g0021 a0001c0002t0001g0110 a0001c0005t0001g0090 a0001c0005t0001g0104 a0009c0027t0001g0007	5	116	0.0431	-5	c.358 others(22): Show c.358+9125_358+9129delTTTAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2791003	AAGAGT AAGAGT	A A	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp2 HG01258.hp1 others(9): Show HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01978.hp1 HG02258.hp2 HG02451.hp1 HG02572.hp1 HG02647.hp2 HG02897.hp2 HG03516.hp1 HG03927.hp1 NA19043.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0010 a0009c0027	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(7): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0002t0001 a0001c0004t0001 a0001c0004t0006 a0001c0005t0001 a0001c0007t0003 a0001c0010t0003 a0009c0027t0001	a0001c0001t0001g0050 a0001c0001t0003g0006 a0001c0001t0003g0095 others(9): Show a0001c0001t0001g0050 a0001c0001t0003g0006 a0001c0001t0003g0095 a0001c0001t0005g0098 a0001c0002t0001g0110 a0001c0004t0001g0097 a0001c0004t0001g0106 a0001c0004t0006g0044 a0001c0005t0001g0090 a0001c0007t0003g0034 a0001c0010t0003g0011 a0009c0027t0001g0007	12	116	0.1035	-5	c.359 others(24): Show c.359-28481_359-28477delGAGTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2834898	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02258.hp1 HG02486.hp1 others(4): Show HG00738.hp1 HG02258.hp1 HG02486.hp1 HG02647.hp2 HG03209.hp2 HG03486.hp2 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0005 others(4): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0010 a0001c0024 a0005c0012	a0001c0001t0003 a0001c0002t0007 a0001c0005t0006 others(4): Show a0001c0001t0003 a0001c0002t0007 a0001c0005t0006 a0001c0006t0002 a0001c0010t0003 a0001c0024t0015 a0005c0012t0009	a0001c0001t0003g0008 a0001c0002t0007g0112 a0001c0005t0006g0032 others(4): Show a0001c0001t0003g0008 a0001c0002t0007g0112 a0001c0005t0006g0032 a0001c0006t0002g0026 a0001c0010t0003g0011 a0001c0024t0015g0057 a0005c0012t0009g0093	7	116	0.0603	-5	c.454 others(24): Show c.454+15337_454+15341delTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2853805	CTGATT CTGATT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp2 HG00735.hp2 others(42): Show HG00639.hp1 HG00639.hp2 HG00735.hp2 HG00738.hp2 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01261.hp2 HG01361.hp1 HG01884.hp1 HG01884.hp2 HG02074.hp2 HG02132.hp2 HG02165.hp2 HG02258.hp2 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02738.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03209.hp2 HG03239.hp1 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03654.hp1 HG03831.hp2 HG03927.hp2 NA18906.hp1 NA18906.hp2 NA18990.hp1 NA18990.hp2 NA19043.hp2 NA20300.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0007 a0008	a0001c0001 a0001c0002 a0001c0003 others(12): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0009 a0001c0025 a0002c0015 a0002c0016 a0003c0008 a0004c0011 a0005c0012 a0007c0018 a0008c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0012 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0011 a0001c0004t0002 a0001c0005t0001 a0001c0005t0006 a0001c0007t0003 a0001c0007t0016 a0001c0009t0014 a0001c0025t0001 a0002c0015t0003 a0002c0016t0003 a0003c0008t0013 a0004c0011t0003 a0005c0012t0009 a0007c0018t0003 a0008c0026t0017	a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0059 others(42): Show a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0059 a0001c0001t0002g0086 a0001c0001t0003g0006 a0001c0001t0003g0058 a0001c0001t0003g0101 a0001c0001t0004g0042 a0001c0001t0005g0054 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0001t0009g0052 a0001c0002t0001g0027 a0001c0002t0001g0038 a0001c0002t0001g0108 a0001c0002t0002g0035 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0005g0002 a0001c0002t0012g0013 a0001c0003t0001g0045 a0001c0003t0001g0075 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0003g0015 a0001c0003t0011g0113 a0001c0004t0002g0064 a0001c0004t0002g0076 a0001c0005t0001g0090 a0001c0005t0001g0104 a0001c0005t0006g0032 a0001c0007t0003g0034 a0001c0007t0016g0105 a0001c0009t0014g0039 a0001c0025t0001g0100 a0002c0015t0003g0103 a0002c0016t0003g0079 a0003c0008t0013g0109 a0004c0011t0003g0065 a0004c0011t0003g0111 a0005c0012t0009g0093 a0007c0018t0003g0062 a0008c0026t0017g0047	45	116	0.3879	-5	c.455 others(24): Show c.455-12945_455-12941delGATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2894710	TAAAAG TAAAAG	T T	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02886.hp1 NA18906.hp2 HG02486.hp1 HG02886.hp1 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0005c0012 a0001c0001 a0001c0005 a0005c0012	a0001c0001t0003 a0001c0005t0009 a0005c0012t0009 a0001c0001t0003 a0001c0005t0009 a0005c0012t0009	a0001c0001t0003g0008 a0001c0005t0009g0091 a0005c0012t0009g0093 a0001c0001t0003g0008 a0001c0005t0009g0091 a0005c0012t0009g0093	3	116	0.0259	-5	c.941 others(22): Show c.941-5971_941-5967delAGAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	10/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2930372	TATAAC TATAAC	T T	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02258.hp1 HG03453.hp2 others(3): Show HG02257.hp1 HG02258.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG06807.hp1	a0001 a0001	a0001c0005 a0001c0006 a0001c0021 others(2): Show a0001c0005 a0001c0006 a0001c0021 a0001c0022 a0001c0023	a0001c0005t0010 a0001c0006t0002 a0001c0021t0002 others(2): Show a0001c0005t0010 a0001c0006t0002 a0001c0021t0002 a0001c0022t0003 a0001c0023t0004	a0001c0005t0010g0085 a0001c0006t0002g0026 a0001c0006t0002g0060 others(3): Show a0001c0005t0010g0085 a0001c0006t0002g0026 a0001c0006t0002g0060 a0001c0021t0002g0025 a0001c0022t0003g0083 a0001c0023t0004g0041	6	116	0.0517	-5	c.135 others(24): Show c.1358+4597_1358+4601delACATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2946699	TTTTTC TTTTTC	T T	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02257.hp2 HG02615.hp1 others(1): Show HG01361.hp2 HG02257.hp2 HG02615.hp1 HG02622.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0014 a0001c0001 a0001c0002 a0002c0014	a0001c0001t0004 a0001c0001t0008 a0001c0002t0004 others(1): Show a0001c0001t0004 a0001c0001t0008 a0001c0002t0004 a0002c0014t0001	a0001c0001t0004g0081 a0001c0001t0008g0089 a0001c0002t0004g0017 others(1): Show a0001c0001t0004g0081 a0001c0001t0008g0089 a0001c0002t0004g0017 a0002c0014t0001g0016	4	116	0.0345	-5	c.135 others(26): Show c.1358+20925_1358+20929delCTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2983213	CAAAAA CAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02257.hp1 HG02258.hp2 others(4): Show HG02132.hp1 HG02257.hp1 HG02258.hp2 HG03239.hp1 HG03239.hp2 HG03654.hp2 NA18906.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0001c0004 a0001c0007 others(3): Show a0001c0001 a0001c0004 a0001c0007 a0001c0022 a0002c0015 a0006c0028	a0001c0001t0001 a0001c0001t0005 a0001c0004t0002 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0004t0002 a0001c0007t0003 a0001c0022t0003 a0002c0015t0003 a0006c0028t0001	a0001c0001t0001g0012 a0001c0001t0005g0115 a0001c0004t0002g0064 others(4): Show a0001c0001t0001g0012 a0001c0001t0005g0115 a0001c0004t0002g0064 a0001c0007t0003g0034 a0001c0022t0003g0083 a0002c0015t0003g0103 a0006c0028t0001g0023	7	116	0.0603	-5	c.135 others(24): Show c.1359-5094_1359-5090delAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3003684	CAAAAA CAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp1 HG02572.hp1 others(3): Show HG01891.hp2 HG02451.hp1 HG02572.hp1 HG02965.hp2 HG03209.hp1 HG03516.hp1	a0001 a0009 a0001 a0009	a0001c0002 a0001c0005 a0001c0006 others(1): Show a0001c0002 a0001c0005 a0001c0006 a0009c0027	a0001c0002t0001 a0001c0005t0001 a0001c0006t0003 others(2): Show a0001c0002t0001 a0001c0005t0001 a0001c0006t0003 a0001c0006t0004 a0009c0027t0001	a0001c0002t0001g0110 a0001c0005t0001g0090 a0001c0005t0001g0092 others(3): Show a0001c0002t0001g0110 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0006t0003g0069 a0001c0006t0004g0004 a0009c0027t0001g0007	6	116	0.0517	-5	c.148 others(26): Show c.1486+15238_1486+15242delAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3010465	TAAAAA TAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00735.hp1 others(27): Show HG00140.hp1 HG00140.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG01169.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp2 HG02074.hp2 HG02132.hp1 HG02165.hp1 HG02523.hp2 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02683.hp1 HG02717.hp2 HG02818.hp1 HG03041.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03831.hp1 HG03927.hp1 NA19043.hp1 NA19043.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0004 others(6): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0007 a0001c0023 a0001c0024 a0002c0017 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0002t0002 a0001c0002t0007 a0001c0004t0001 a0001c0004t0002 a0001c0005t0010 a0001c0007t0004 a0001c0007t0016 a0001c0023t0004 a0001c0024t0015 a0002c0017t0008 a0004c0011t0003	a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 others(27): Show a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0099 a0001c0001t0002g0028 a0001c0001t0002g0055 a0001c0001t0002g0086 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0004g0042 a0001c0001t0004g0081 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0001t0008g0043 a0001c0002t0002g0063 a0001c0002t0007g0112 a0001c0004t0001g0020 a0001c0004t0001g0036 a0001c0004t0002g0022 a0001c0004t0002g0076 a0001c0005t0010g0085 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0023t0004g0041 a0001c0024t0015g0057 a0002c0017t0008g0067 a0004c0011t0003g0111	30	116	0.2586	-5	c.148 others(26): Show c.1487-15623_1487-15619delAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3060284	TGTTGA TGTTGA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00639.hp1 others(53): Show HG00140.hp1 HG00438.hp1 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG01169.hp2 HG01175.hp2 HG01243.hp2 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01361.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02965.hp1 HG03130.hp2 HG03139.hp1 HG03209.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03540.hp2 HG03654.hp1 HG03927.hp1 HG03927.hp2 HG06807.hp1 NA18906.hp1 NA18990.hp2 NA19043.hp2 NA20300.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0008	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0021 a0001c0022 a0002c0015 a0003c0008 a0003c0019 a0004c0011 a0008c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(31): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0007 a0001c0002t0012 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0006t0002 a0001c0006t0003 a0001c0006t0004 a0001c0007t0003 a0001c0009t0004 a0001c0010t0003 a0001c0013t0007 a0001c0021t0002 a0001c0022t0003 a0002c0015t0003 a0003c0008t0013 a0003c0019t0002 a0004c0011t0003 a0008c0026t0017	a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 others(53): Show a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0099 a0001c0001t0002g0074 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0003g0058 a0001c0001t0004g0081 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0009g0052 a0001c0002t0001g0027 a0001c0002t0001g0029 a0001c0002t0001g0108 a0001c0002t0002g0035 a0001c0002t0002g0063 a0001c0002t0002g0102 a0001c0002t0004g0017 a0001c0002t0007g0009 a0001c0002t0007g0080 a0001c0002t0007g0087 a0001c0002t0012g0013 a0001c0003t0001g0014 a0001c0003t0001g0045 a0001c0003t0001g0075 a0001c0003t0001g0094 a0001c0003t0002g0073 a0001c0003t0002g0107 a0001c0003t0003g0015 a0001c0003t0003g0046 a0001c0003t0006g0040 a0001c0004t0001g0097 a0001c0004t0001g0106 a0001c0004t0002g0064 a0001c0004t0002g0076 a0001c0004t0006g0044 a0001c0005t0001g0096 a0001c0005t0006g0032 a0001c0006t0002g0026 a0001c0006t0002g0060 a0001c0006t0003g0069 a0001c0006t0004g0004 a0001c0007t0003g0034 a0001c0009t0004g0005 a0001c0010t0003g0011 a0001c0013t0007g0056 a0001c0021t0002g0025 a0001c0022t0003g0083 a0002c0015t0003g0103 a0003c0008t0013g0109 a0003c0019t0002g0031 a0004c0011t0003g0111 a0008c0026t0017g0047	56	116	0.4828	-5	c.40 others(16): Show c.4065_*4069delGTTGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding		2326		chr3	TogoVar
CNTN5_chr11_99015949_100363885	99028704	CAAGGT CAAGGT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01099.hp1 HG01123.hp2 others(7): Show HG00733.hp2 HG01099.hp1 HG01123.hp2 HG01243.hp2 HG01496.hp2 HG01934.hp2 HG02735.hp2 HG02895.hp1 HG02976.hp2 NA19070.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005	a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 others(5): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0014 a0002c0002t0005 a0002c0002t0022 a0003c0003t0002 a0005c0005t0001	a0001c0001t0004g0010 a0001c0001t0005g0014 a0001c0001t0012g0018 others(7): Show a0001c0001t0004g0010 a0001c0001t0005g0014 a0001c0001t0012g0018 a0001c0001t0014g0016 a0002c0002t0005g0015 a0002c0002t0022g0013 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0061 a0005c0005t0001g0017	10	66	0.1515	-5	c.-21 others(24): Show c.-210+7437_-210+7441delGGTAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99139614	ATCTTT ATCTTT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01123.hp1 NA20300.hp1 HG01081.hp2 HG01123.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010	a0001c0001t0003g0060 a0001c0001t0005g0048 a0001c0001t0010g0047 a0001c0001t0003g0060 a0001c0001t0005g0048 a0001c0001t0010g0047	3	66	0.0455	-5	c.-21 others(28): Show c.-210+118349_-210+118353delTTCTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99193975	ATAGAG ATAGAG	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02602.hp2 HG02257.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0015 a0001c0001t0001 a0001c0001t0015	a0001c0001t0001g0053 a0001c0001t0015g0064 a0001c0001t0001g0053 a0001c0001t0015g0064	2	66	0.0303	-5	c.-20 others(28): Show c.-209-131370_-209-131366delTAGAG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99332308	CATCTT CATCTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp2 HG00735.hp1 others(63): Show HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01496.hp1 HG01496.hp2 HG01934.hp1 HG01934.hp2 HG02004.hp1 HG02004.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02602.hp1 HG02602.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03471.hp1 HG03471.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18939.hp1 NA18939.hp2 NA18957.hp1 NA18957.hp2 NA19000.hp1 NA19000.hp2 NA19043.hp1 NA19043.hp2 NA19070.hp1 NA19070.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(9): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012	a0001c0001 a0002c0002 a0003c0003 others(10): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0008c0008 a0009c0012 a0010c0010 a0011c0009 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(38): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 a0002c0002t0005 a0002c0002t0008 a0002c0002t0021 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0003c0003t0017 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0004c0004t0020 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0001 a0006c0006t0009 a0006c0006t0011 a0006c0006t0013 a0006c0006t0014 a0007c0007t0023 a0008c0008t0007 a0009c0012t0008 a0010c0010t0011 a0011c0009t0005 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0020 others(63): Show a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0004g0010 a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0006g0032 a0001c0001t0006g0040 a0001c0001t0006g0066 a0001c0001t0009g0043 a0001c0001t0009g0063 a0001c0001t0010g0023 a0001c0001t0010g0047 a0001c0001t0011g0062 a0001c0001t0012g0018 a0001c0001t0012g0030 a0001c0001t0014g0016 a0001c0001t0015g0064 a0001c0001t0016g0049 a0002c0002t0001g0003 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0004g0039 a0002c0002t0005g0015 a0002c0002t0008g0019 a0002c0002t0021g0055 a0002c0002t0022g0013 a0003c0003t0002g0002 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0027 a0003c0003t0002g0061 a0003c0003t0007g0034 a0003c0003t0007g0057 a0003c0003t0017g0065 a0003c0011t0019g0059 a0004c0004t0002g0001 a0004c0004t0002g0041 a0004c0004t0002g0051 a0004c0004t0013g0050 a0004c0004t0020g0024 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0001g0005 a0006c0006t0009g0042 a0006c0006t0011g0033 a0006c0006t0013g0025 a0006c0006t0014g0058 a0007c0007t0023g0046 a0008c0008t0007g0038 a0009c0012t0008g0026 a0010c0010t0011g0009 a0011c0009t0005g0056 a0012c0013t0008g0031	66	66	1.0000	-5	c.-71 others(22): Show c.-71+6827_-71+6831delCTTAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99373070	ATGGTG ATGGTG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00735.hp1 HG01081.hp2 others(4): Show HG00733.hp1 HG00735.hp1 HG01081.hp2 HG01123.hp2 HG01496.hp2 HG02257.hp2 NA19043.hp1	a0001 a0003 a0006 others(1): Show a0001 a0003 a0006 a0011	a0001c0001 a0003c0003 a0006c0006 others(1): Show a0001c0001 a0003c0003 a0006c0006 a0011c0009	a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 others(4): Show a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0015 a0003c0003t0002 a0006c0006t0009 a0011c0009t0005	a0001c0001t0009g0063 a0001c0001t0010g0047 a0001c0001t0012g0018 others(4): Show a0001c0001t0009g0063 a0001c0001t0010g0047 a0001c0001t0012g0018 a0001c0001t0015g0064 a0003c0003t0002g0012 a0006c0006t0009g0042 a0011c0009t0005g0056	7	66	0.1061	-5	c.-71 others(24): Show c.-71+47587_-71+47591delTGGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99388982	CTTATT CTTATT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01099.hp1 HG01123.hp1 others(11): Show HG01081.hp2 HG01099.hp1 HG01123.hp1 HG01169.hp1 HG02109.hp1 HG02723.hp2 HG02735.hp1 HG02895.hp2 HG02976.hp1 HG06807.hp2 NA18939.hp2 NA18957.hp1 NA19000.hp2 NA20300.hp2	a0001 a0003 a0004 others(3): Show a0001 a0003 a0004 a0005 a0007 a0012	a0001c0001 a0003c0003 a0004c0004 others(3): Show a0001c0001 a0003c0003 a0004c0004 a0005c0005 a0007c0007 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0003c0003t0007 a0004c0004t0002 a0004c0004t0013 a0005c0005t0010 a0007c0007t0023 a0012c0013t0008	a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0003g0060 others(11): Show a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0003g0060 a0001c0001t0004g0010 a0001c0001t0004g0044 a0001c0001t0006g0032 a0001c0001t0009g0043 a0001c0001t0010g0047 a0003c0003t0007g0034 a0004c0004t0002g0001 a0004c0004t0013g0050 a0005c0005t0010g0006 a0007c0007t0023g0046 a0012c0013t0008g0031	14	66	0.2121	-5	c.-71 others(24): Show c.-71+63556_-71+63560delATTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99403008	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00738.hp2 HG01081.hp1 others(10): Show HG00733.hp2 HG00738.hp2 HG01081.hp1 HG01243.hp1 HG02976.hp2 HG03041.hp1 HG03471.hp2 NA18522.hp2 NA18957.hp1 NA18957.hp2 NA19000.hp1 NA19070.hp2 NA20300.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0006 a0009	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0009c0012	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(10): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0014 a0002c0002t0004 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0004c0004t0002 a0005c0005t0001 a0005c0005t0018 a0006c0006t0014 a0009c0012t0008	a0001c0001t0001g0052 a0001c0001t0004g0029 a0001c0001t0005g0048 others(10): Show a0001c0001t0001g0052 a0001c0001t0004g0029 a0001c0001t0005g0048 a0001c0001t0014g0016 a0002c0002t0004g0039 a0002c0002t0022g0013 a0003c0003t0002g0002 a0003c0003t0007g0057 a0004c0004t0002g0041 a0005c0005t0001g0017 a0005c0005t0018g0028 a0006c0006t0014g0058 a0009c0012t0008g0026	13	66	0.1970	-5	c.-71 others(24): Show c.-71+77536_-71+77540delTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99432459	TCTTTC TCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02735.hp1 HG02132.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0016 a0001c0001t0006 a0001c0001t0016	a0001c0001t0006g0032 a0001c0001t0016g0049 a0001c0001t0006g0032 a0001c0001t0016g0049	2	66	0.0303	-5	c.-71 others(26): Show c.-71+106980_-71+106984delCCTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99433371	ATGTGT ATGTGT	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00735.hp1 HG00738.hp2 others(7): Show HG00733.hp2 HG00735.hp1 HG00738.hp2 HG01099.hp1 HG01123.hp2 HG01243.hp2 HG01496.hp2 HG02004.hp2 HG02602.hp2 NA18957.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0006c0006	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0002c0002t0022 a0003c0003t0002 a0004c0004t0002 a0006c0006t0009	a0001c0001t0001g0004 a0001c0001t0001g0052 a0001c0001t0001g0053 others(7): Show a0001c0001t0001g0004 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0004g0010 a0001c0001t0005g0014 a0001c0001t0012g0018 a0002c0002t0022g0013 a0003c0003t0002g0012 a0004c0004t0002g0041 a0006c0006t0009g0042	10	66	0.1515	-5	c.-71 others(26): Show c.-71+107888_-71+107892delTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99448730	TTTTTA TTTTTA	T T	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01099.hp1 HG03130.hp2 others(2): Show HG00733.hp2 HG01099.hp1 HG03130.hp2 NA18957.hp1 NA20300.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0002c0002 a0012c0013 a0001c0001 a0002c0002 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0002c0002t0022 a0012c0013t0008	a0001c0001t0001g0052 a0001c0001t0004g0010 a0001c0001t0006g0040 others(2): Show a0001c0001t0001g0052 a0001c0001t0004g0010 a0001c0001t0006g0040 a0002c0002t0022g0013 a0012c0013t0008g0031	5	66	0.0758	-5	c.-70 others(26): Show c.-70-107355_-70-107351delATTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar

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