Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNTN5_chr11_99015949_100363885	99523597	GATAGA GATAGA	G G	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01496.hp1 HG02109.hp1 others(2): Show HG01123.hp1 HG01496.hp1 HG02109.hp1 HG02886.hp1 NA18522.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005	a0001c0001t0003 a0002c0002t0021 a0003c0003t0002 others(2): Show a0001c0001t0003 a0002c0002t0021 a0003c0003t0002 a0003c0003t0007 a0005c0005t0010	a0001c0001t0003g0060 a0002c0002t0021g0055 a0003c0003t0002g0027 others(2): Show a0001c0001t0003g0060 a0002c0002t0021g0055 a0003c0003t0002g0027 a0003c0003t0007g0057 a0005c0005t0010g0006	5	66	0.0758	-5	c.-70 others(24): Show c.-70-32496_-70-32492delTAGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523649	TAGAAC TAGAAC	T T	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG03130.hp2 NA19043.hp1 HG02004.hp1 HG03130.hp2 NA19043.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0011c0009 a0001c0001 a0011c0009	a0001c0001t0001 a0001c0001t0006 a0011c0009t0005 a0001c0001t0001 a0001c0001t0006 a0011c0009t0005	a0001c0001t0001g0054 a0001c0001t0006g0040 a0011c0009t0005g0056 a0001c0001t0001g0054 a0001c0001t0006g0040 a0011c0009t0005g0056	3	66	0.0455	-5	c.-70 others(24): Show c.-70-32487_-70-32483delACAGA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523663	TCAGAA TCAGAA	T T	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00738.hp1 HG01081.hp1 others(8): Show HG00733.hp1 HG00738.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp2 HG01243.hp1 HG02004.hp1 HG02735.hp2 HG02976.hp2 HG03130.hp1 HG06807.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005	a0001c0001t0001 a0001c0001t0009 a0001c0001t0010 others(5): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0010 a0002c0002t0003 a0002c0002t0004 a0003c0003t0002 a0005c0005t0001 a0005c0005t0018	a0001c0001t0001g0020 a0001c0001t0001g0054 a0001c0001t0009g0063 others(8): Show a0001c0001t0001g0020 a0001c0001t0001g0054 a0001c0001t0009g0063 a0001c0001t0010g0047 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0039 a0003c0003t0002g0061 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0018g0028	11	66	0.1667	-5	c.-70 others(24): Show c.-70-32451_-70-32447delCAGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523704	CAGAAT CAGAAT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp2 HG00735.hp2 others(41): Show HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01169.hp1 HG01243.hp1 HG01243.hp2 HG01496.hp1 HG01934.hp1 HG02004.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02258.hp1 HG02258.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp2 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03471.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18939.hp2 NA18957.hp2 NA19000.hp1 NA19000.hp2 NA19043.hp2 NA19070.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(6): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0010 a0012	a0001c0001 a0002c0002 a0003c0003 others(6): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0010c0010 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(27): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0016 a0002c0002t0003 a0002c0002t0004 a0002c0002t0005 a0002c0002t0008 a0002c0002t0021 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0004c0004t0002 a0004c0004t0020 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0011 a0006c0006t0013 a0006c0006t0014 a0007c0007t0023 a0010c0010t0011 a0012c0013t0008	a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0054 others(41): Show a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0004g0010 a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0009g0043 a0001c0001t0009g0063 a0001c0001t0010g0023 a0001c0001t0010g0047 a0001c0001t0011g0062 a0001c0001t0012g0030 a0001c0001t0014g0016 a0001c0001t0016g0049 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0004g0039 a0002c0002t0005g0015 a0002c0002t0008g0019 a0002c0002t0021g0055 a0002c0002t0022g0013 a0003c0003t0002g0002 a0003c0003t0002g0061 a0003c0003t0007g0034 a0004c0004t0002g0001 a0004c0004t0002g0041 a0004c0004t0002g0051 a0004c0004t0020g0024 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0011g0033 a0006c0006t0013g0025 a0006c0006t0014g0058 a0007c0007t0023g0046 a0010c0010t0011g0009 a0012c0013t0008g0031	44	66	0.6667	-5	c.-70 others(24): Show c.-70-32419_-70-32415delGAATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99584972	AAAACT AAAACT	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00738.hp2 HG01081.hp1 others(26): Show HG00733.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01496.hp2 HG01934.hp1 HG01934.hp2 HG02004.hp1 HG02004.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp2 HG02258.hp2 HG02602.hp1 HG02602.hp2 HG02735.hp1 HG02735.hp2 HG02976.hp2 HG03130.hp1 HG06807.hp2 NA18522.hp1 NA18939.hp1 NA18939.hp2 NA18957.hp1 NA19000.hp1 NA19070.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0007c0007	a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 others(15): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0002c0002t0004 a0003c0003t0002 a0003c0003t0017 a0004c0004t0002 a0005c0005t0001 a0005c0005t0003 a0005c0005t0018 a0006c0006t0001 a0006c0006t0014 a0007c0007t0023	a0001c0001t0001g0004 a0001c0001t0001g0020 a0001c0001t0001g0052 others(26): Show a0001c0001t0001g0004 a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0006g0032 a0001c0001t0006g0066 a0001c0001t0009g0043 a0001c0001t0009g0063 a0001c0001t0010g0047 a0001c0001t0012g0018 a0001c0001t0012g0030 a0001c0001t0014g0016 a0001c0001t0015g0064 a0001c0001t0016g0049 a0002c0002t0004g0007 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0061 a0003c0003t0017g0065 a0004c0004t0002g0041 a0004c0004t0002g0051 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0018g0028 a0006c0006t0001g0005 a0006c0006t0014g0058 a0007c0007t0023g0046	29	66	0.4394	-5	c.55+ others(22): Show c.55+28707_55+28711delCTAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99613675	TTATAG TTATAG	T T	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01496.hp1 HG01934.hp1 others(12): Show HG01243.hp2 HG01496.hp1 HG01934.hp1 HG02004.hp1 HG02602.hp2 HG02723.hp1 HG02723.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03130.hp2 NA18939.hp2 NA19070.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0006 a0007 a0012	a0001c0001 a0002c0002 a0003c0003 others(3): Show a0001c0001 a0002c0002 a0003c0003 a0006c0006 a0007c0007 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(9): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0002c0002t0021 a0003c0003t0007 a0006c0006t0011 a0007c0007t0023 a0012c0013t0008	a0001c0001t0001g0008 a0001c0001t0001g0053 a0001c0001t0001g0054 others(12): Show a0001c0001t0001g0008 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0006g0040 a0001c0001t0010g0023 a0001c0001t0012g0030 a0001c0001t0014g0016 a0002c0002t0021g0055 a0003c0003t0007g0034 a0006c0006t0011g0033 a0007c0007t0023g0046 a0012c0013t0008g0031	15	66	0.2273	-5	c.55+ others(22): Show c.55+57409_55+57413delTAGTA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99619361	CATAAT CATAAT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02258.hp2 HG01081.hp1 HG02258.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0018 a0005c0005t0003 a0005c0005t0018	a0005c0005t0003g0045 a0005c0005t0018g0028 a0005c0005t0003g0045 a0005c0005t0018g0028	2	66	0.0303	-5	c.55+ others(22): Show c.55+63096_55+63100delATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99637010	CAAAAA CAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp2 HG02895.hp1 others(1): Show HG02258.hp1 HG02258.hp2 HG02895.hp1 NA20300.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0010	a0001c0001 a0002c0002 a0005c0005 others(1): Show a0001c0001 a0002c0002 a0005c0005 a0010c0010	a0001c0001t0005 a0002c0002t0005 a0005c0005t0003 others(1): Show a0001c0001t0005 a0002c0002t0005 a0005c0005t0003 a0010c0010t0011	a0001c0001t0005g0048 a0002c0002t0005g0015 a0005c0005t0003g0045 others(1): Show a0001c0001t0005g0048 a0002c0002t0005g0015 a0005c0005t0003g0045 a0010c0010t0011g0009	4	66	0.0606	-5	c.55+ others(22): Show c.55+80768_55+80772delAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99675013	GGTTTT GGTTTT	G G	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02895.hp1 NA20300.hp1 HG02258.hp1 HG02895.hp1 NA20300.hp1	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0002c0002 a0010c0010 a0001c0001 a0002c0002 a0010c0010	a0001c0001t0005 a0002c0002t0005 a0010c0010t0011 a0001c0001t0005 a0002c0002t0005 a0010c0010t0011	a0001c0001t0005g0048 a0002c0002t0005g0015 a0010c0010t0011g0009 a0001c0001t0005g0048 a0002c0002t0005g0015 a0010c0010t0011g0009	3	66	0.0455	-5	c.55+ others(24): Show c.55+118774_55+118778delTGTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99682300	AAAGAG AAAGAG	A A	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01934.hp2 HG01169.hp1 HG01934.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0009 a0003c0003t0002 a0001c0001t0009 a0003c0003t0002	a0001c0001t0009g0043 a0003c0003t0002g0011 a0001c0001t0009g0043 a0003c0003t0002g0011	2	66	0.0303	-5	c.55+ others(24): Show c.55+126038_55+126042delAGAGA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99725540	TTTGCC TTTGCC	T T	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00735.hp1 HG00738.hp2 others(40): Show HG00733.hp2 HG00735.hp1 HG00738.hp2 HG01081.hp1 HG01099.hp1 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01496.hp1 HG01496.hp2 HG01934.hp2 HG02004.hp1 HG02004.hp2 HG02109.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02602.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03471.hp1 NA18522.hp1 NA18522.hp2 NA18939.hp1 NA18939.hp2 NA18957.hp1 NA19000.hp1 NA19043.hp1 NA19070.hp1 NA19070.hp2 NA20300.hp2	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0011 a0012	a0001c0001 a0002c0002 a0003c0003 others(9): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0008c0008 a0009c0012 a0011c0009 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(30): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0002c0002t0001 a0002c0002t0004 a0002c0002t0021 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0003c0003t0017 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0004c0004t0020 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0001 a0006c0006t0009 a0006c0006t0011 a0006c0006t0014 a0007c0007t0023 a0008c0008t0007 a0009c0012t0008 a0011c0009t0005 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0052 others(40): Show a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0004g0010 a0001c0001t0005g0014 a0001c0001t0006g0032 a0001c0001t0006g0040 a0001c0001t0009g0043 a0001c0001t0010g0023 a0001c0001t0012g0018 a0001c0001t0014g0016 a0001c0001t0015g0064 a0002c0002t0001g0003 a0002c0002t0004g0007 a0002c0002t0004g0039 a0002c0002t0021g0055 a0002c0002t0022g0013 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0027 a0003c0003t0002g0061 a0003c0003t0007g0034 a0003c0003t0007g0057 a0003c0003t0017g0065 a0003c0011t0019g0059 a0004c0004t0002g0041 a0004c0004t0013g0050 a0004c0004t0020g0024 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0001g0005 a0006c0006t0009g0042 a0006c0006t0011g0033 a0006c0006t0014g0058 a0007c0007t0023g0046 a0008c0008t0007g0038 a0009c0012t0008g0026 a0011c0009t0005g0056 a0012c0013t0008g0031	43	66	0.6515	-5	c.56- others(22): Show c.56-93996_56-93992delGCCTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99744543	TAAAAA TAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01081.hp1 HG01099.hp2 others(5): Show HG00738.hp1 HG01081.hp1 HG01099.hp2 HG02004.hp1 HG02109.hp1 HG02109.hp2 HG02258.hp2 HG02965.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0005 a0001c0001 a0002c0002 a0005c0005	a0001c0001t0001 a0001c0001t0003 a0002c0002t0003 others(3): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0003 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018	a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 others(5): Show a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0002c0002t0003g0036 a0002c0002t0003g0037 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028	8	66	0.1212	-5	c.56- others(22): Show c.56-74975_56-74971delAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99794238	AGCAAT AGCAAT	A A	intron_variant intron_variant	MODIFIER	HG02132.hp2 NA18939.hp2 NA19000.hp2 HG02132.hp2 NA18939.hp2 NA19000.hp2	a0004 a0007 a0004 a0007	a0004c0004 a0007c0007 a0004c0004 a0007c0007	a0004c0004t0002 a0007c0007t0023 a0004c0004t0002 a0007c0007t0023	a0004c0004t0002g0001 a0004c0004t0002g0051 a0007c0007t0023g0046 a0004c0004t0002g0001 a0004c0004t0002g0051 a0007c0007t0023g0046	3	66	0.0455	-5	c.56- others(22): Show c.56-25305_56-25301delGCAAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		chr11	TogoVar
CNTN5_chr11_99015949_100363885	99839112	TAAAAC TAAAAC	T T	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG02109.hp2 HG02965.hp2 HG01123.hp1 HG02109.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060	3	66	0.0455	-5	c.278 others(22): Show c.278-5736_278-5732delACAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	4/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99841891	TATATA TATATA	T T	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01169.hp1 HG01934.hp1 others(9): Show HG01081.hp1 HG01169.hp1 HG01934.hp1 HG02257.hp1 HG02258.hp2 HG02602.hp1 HG02602.hp2 HG03471.hp2 HG06807.hp1 NA18957.hp1 NA20300.hp1 NA20300.hp2	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0006 a0012	a0001c0001 a0003c0011 a0005c0005 others(2): Show a0001c0001 a0003c0011 a0005c0005 a0006c0006 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(8): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0003c0011t0019 a0005c0005t0003 a0005c0005t0018 a0006c0006t0013 a0012c0013t0008	a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0004g0029 others(9): Show a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0004g0029 a0001c0001t0005g0048 a0001c0001t0006g0066 a0001c0001t0009g0043 a0001c0001t0012g0030 a0003c0011t0019g0059 a0005c0005t0003g0045 a0005c0005t0018g0028 a0006c0006t0013g0025 a0012c0013t0008g0031	12	66	0.1818	-5	c.278 others(22): Show c.278-2960_278-2956delATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	4/24		chr11	TogoVar
CNTN5_chr11_99015949_100363885	99841892	ATATAT ATATAT	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00735.hp1 HG02257.hp2 others(2): Show HG00733.hp1 HG00735.hp1 HG02257.hp2 HG02723.hp2 HG02735.hp2	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0006 a0001c0001 a0003c0003 a0006c0006	a0001c0001t0004 a0001c0001t0009 a0001c0001t0015 others(2): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0015 a0003c0003t0002 a0006c0006t0009	a0001c0001t0004g0044 a0001c0001t0009g0063 a0001c0001t0015g0064 others(2): Show a0001c0001t0004g0044 a0001c0001t0009g0063 a0001c0001t0015g0064 a0003c0003t0002g0061 a0006c0006t0009g0042	5	66	0.0758	-5	c.278 others(22): Show c.278-2958_278-2954delATATT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	4/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99919802	ATTTAT ATTTAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG00738.hp1 others(19): Show HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01099.hp2 HG01243.hp1 HG01243.hp2 HG01934.hp2 HG02004.hp2 HG02109.hp1 HG02257.hp1 HG02602.hp1 HG02735.hp1 HG02895.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03471.hp2 NA18939.hp1 NA19000.hp2 NA19070.hp2 NA20300.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0005 a0006 a0009 a0012	a0001c0001 a0002c0002 a0003c0003 others(6): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(17): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0002c0002t0003 a0002c0002t0004 a0003c0003t0002 a0003c0003t0017 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0005c0005t0001 a0005c0005t0010 a0006c0006t0009 a0006c0006t0011 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0004g0029 a0001c0001t0005g0014 others(19): Show a0001c0001t0001g0004 a0001c0001t0004g0029 a0001c0001t0005g0014 a0001c0001t0006g0032 a0001c0001t0006g0066 a0001c0001t0010g0023 a0001c0001t0011g0062 a0001c0001t0014g0016 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0039 a0003c0003t0002g0011 a0003c0003t0017g0065 a0003c0011t0019g0059 a0004c0004t0002g0001 a0004c0004t0013g0050 a0005c0005t0001g0035 a0005c0005t0010g0006 a0006c0006t0009g0042 a0006c0006t0011g0033 a0009c0012t0008g0026 a0012c0013t0008g0031	22	66	0.3333	-5	c.673 others(22): Show c.673+3686_673+3690delTATTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99945483	TCTGTG TCTGTG	T T	intron_variant intron_variant	MODIFIER	HG02976.hp2 NA19043.hp2 HG02976.hp2 NA19043.hp2	a0002 a0005 a0002 a0005	a0002c0002 a0005c0005 a0002c0002 a0005c0005	a0002c0002t0008 a0005c0005t0001 a0002c0002t0008 a0005c0005t0001	a0002c0002t0008g0019 a0005c0005t0001g0017 a0002c0002t0008g0019 a0005c0005t0001g0017	2	66	0.0303	-5	c.674 others(24): Show c.674-11321_674-11317delTGTGC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99962114	TTACTC TTACTC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00738.hp1 HG01099.hp2 others(19): Show HG00735.hp1 HG00738.hp1 HG01099.hp2 HG01123.hp1 HG01243.hp2 HG01496.hp1 HG02109.hp2 HG02602.hp1 HG02723.hp1 HG02723.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp2 HG02976.hp1 HG03041.hp1 HG03130.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA19043.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0009 a0012	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0006c0006 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(13): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0002c0002t0003 a0002c0002t0004 a0002c0002t0008 a0002c0002t0021 a0003c0003t0002 a0003c0003t0007 a0004c0004t0020 a0006c0006t0009 a0006c0006t0013 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0003g0021 others(19): Show a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0006g0040 a0001c0001t0006g0066 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0008g0019 a0002c0002t0021g0055 a0003c0003t0002g0027 a0003c0003t0007g0034 a0004c0004t0020g0024 a0006c0006t0009g0042 a0006c0006t0013g0025 a0009c0012t0008g0026 a0012c0013t0008g0031	22	66	0.3333	-5	c.877 others(22): Show c.877+5108_877+5112delCTCTA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99972085	TAAAAA TAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00738.hp1 HG01099.hp2 others(9): Show HG00733.hp1 HG00738.hp1 HG01099.hp2 HG02602.hp1 HG02602.hp2 HG02723.hp2 HG03041.hp1 HG03130.hp2 HG06807.hp2 NA19043.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0009 others(1): Show a0001 a0002 a0009 a0012	a0001c0001 a0002c0002 a0009c0012 others(1): Show a0001c0001 a0002c0002 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0002c0002t0003 a0002c0002t0008 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0020 a0001c0001t0001g0053 a0001c0001t0004g0044 others(9): Show a0001c0001t0001g0020 a0001c0001t0001g0053 a0001c0001t0004g0044 a0001c0001t0005g0048 a0001c0001t0006g0040 a0001c0001t0006g0066 a0001c0001t0009g0063 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0008g0019 a0009c0012t0008g0026 a0012c0013t0008g0031	12	66	0.1818	-5	c.877 others(24): Show c.877+15098_877+15102delAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100060363	TAATAA TAATAA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00738.hp1 HG01081.hp1 others(32): Show HG00735.hp1 HG00738.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01123.hp1 HG01123.hp2 HG01243.hp1 HG01243.hp2 HG01934.hp2 HG02004.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02258.hp2 HG02602.hp2 HG02723.hp2 HG02886.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03471.hp1 HG03471.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18939.hp1 NA19000.hp1 NA19043.hp2 NA19070.hp1 NA20300.hp2	a0001 a0002 a0003 others(6): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0012	a0001c0001 a0002c0002 a0003c0003 others(6): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0008c0008 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0016 a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 a0002c0002t0008 a0003c0003t0002 a0003c0003t0007 a0003c0003t0017 a0004c0004t0002 a0005c0005t0001 a0005c0005t0003 a0005c0005t0018 a0006c0006t0009 a0006c0006t0013 a0006c0006t0014 a0008c0008t0007 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0003g0021 others(32): Show a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0004g0010 a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0010g0023 a0001c0001t0010g0047 a0001c0001t0016g0049 a0002c0002t0001g0003 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0004g0039 a0002c0002t0008g0019 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0027 a0003c0003t0007g0034 a0003c0003t0007g0057 a0003c0003t0017g0065 a0004c0004t0002g0051 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0018g0028 a0006c0006t0009g0042 a0006c0006t0013g0025 a0006c0006t0014g0058 a0008c0008t0007g0038 a0009c0012t0008g0026 a0012c0013t0008g0031	35	66	0.5303	-5	c.981 others(20): Show c.981-844_981-840delAAATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	9/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100127651	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02886.hp2 HG02895.hp2 others(3): Show HG02257.hp1 HG02886.hp2 HG02895.hp2 NA18939.hp2 NA18957.hp2 NA20300.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0007	a0001c0001 a0003c0003 a0003c0011 others(2): Show a0001c0001 a0003c0003 a0003c0011 a0004c0004 a0007c0007	a0001c0001t0005 a0003c0003t0002 a0003c0011t0019 others(3): Show a0001c0001t0005 a0003c0003t0002 a0003c0011t0019 a0004c0004t0013 a0004c0004t0020 a0007c0007t0023	a0001c0001t0005g0048 a0003c0003t0002g0002 a0003c0011t0019g0059 others(3): Show a0001c0001t0005g0048 a0003c0003t0002g0002 a0003c0011t0019g0059 a0004c0004t0013g0050 a0004c0004t0020g0024 a0007c0007t0023g0046	6	66	0.0909	-5	c.158 others(26): Show c.1580+53377_1580+53381delTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100201630	CCTTTA CCTTTA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01169.hp2 HG02004.hp2 others(2): Show HG00735.hp1 HG01169.hp2 HG02004.hp2 HG02735.hp2 NA19000.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0006 a0001c0001 a0003c0003 a0006c0006	a0001c0001t0001 a0003c0003t0002 a0006c0006t0001 others(2): Show a0001c0001t0001 a0003c0003t0002 a0006c0006t0001 a0006c0006t0009 a0006c0006t0014	a0001c0001t0001g0004 a0003c0003t0002g0061 a0006c0006t0001g0005 others(2): Show a0001c0001t0001g0004 a0003c0003t0002g0061 a0006c0006t0001g0005 a0006c0006t0009g0042 a0006c0006t0014g0058	5	66	0.0758	-5	c.188 others(24): Show c.1884+7971_1884+7975delTACTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100205732	TATTAG TATTAG	T T	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02258.hp1 HG02723.hp1 others(3): Show HG01081.hp2 HG02258.hp1 HG02723.hp1 HG02895.hp2 HG03130.hp2 NA19043.hp1	a0001 a0004 a0010 others(1): Show a0001 a0004 a0010 a0011	a0001c0001 a0004c0004 a0010c0010 others(1): Show a0001c0001 a0004c0004 a0010c0010 a0011c0009	a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 a0004c0004t0013 a0010c0010t0011 a0011c0009t0005	a0001c0001t0001g0008 a0001c0001t0006g0040 a0001c0001t0010g0047 others(3): Show a0001c0001t0001g0008 a0001c0001t0006g0040 a0001c0001t0010g0047 a0004c0004t0013g0050 a0010c0010t0011g0009 a0011c0009t0005g0056	6	66	0.0909	-5	c.188 others(26): Show c.1884+12072_1884+12076delTAGAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100276549	AAAAGG AAAAGG	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02258.hp1 HG02886.hp1 others(3): Show HG02109.hp1 HG02258.hp1 HG02886.hp1 HG02895.hp2 HG02965.hp1 NA18939.hp1	a0003 a0004 a0005 others(2): Show a0003 a0004 a0005 a0006 a0010	a0003c0003 a0004c0004 a0005c0005 others(2): Show a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0010c0010	a0003c0003t0002 a0003c0003t0017 a0004c0004t0013 others(3): Show a0003c0003t0002 a0003c0003t0017 a0004c0004t0013 a0005c0005t0010 a0006c0006t0011 a0010c0010t0011	a0003c0003t0002g0027 a0003c0003t0017g0065 a0004c0004t0013g0050 others(3): Show a0003c0003t0002g0027 a0003c0003t0017g0065 a0004c0004t0013g0050 a0005c0005t0010g0006 a0006c0006t0011g0033 a0010c0010t0011g0009	6	66	0.0909	-5	c.231 others(24): Show c.2314+5313_2314+5317delGAAAG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	18/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100342128	CTACTG CTACTG	C C	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA20300.hp2 HG03041.hp1 NA20300.hp2	a0009 a0012 a0009 a0012	a0009c0012 a0012c0013 a0009c0012 a0012c0013	a0009c0012t0008 a0012c0013t0008 a0009c0012t0008 a0012c0013t0008	a0009c0012t0008g0026 a0012c0013t0008g0031 a0009c0012t0008g0026 a0012c0013t0008g0031	2	66	0.0303	-5	c.303 others(22): Show c.3030+926_3030+930delCTGTA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	23/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1119657	CCCTTT CCCTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp2 HG02280.hp2 others(12): Show HG01884.hp1 HG02109.hp2 HG02280.hp2 HG02572.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02922.hp1 HG02922.hp2 HG03130.hp2 HG03139.hp1 HG03516.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(6): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0008 a0001c0009 a0001c0023 a0001c0025 a0002c0011	a0001c0001t0001 a0001c0002t0001 a0001c0005t0001 others(6): Show a0001c0001t0001 a0001c0002t0001 a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 a0001c0009t0001 a0001c0023t0001 a0001c0025t0001 a0002c0011t0001	a0001c0001t0001g0198 a0001c0002t0001g0209 a0001c0005t0001g0163 others(12): Show a0001c0001t0001g0198 a0001c0002t0001g0209 a0001c0005t0001g0163 a0001c0005t0001g0164 a0001c0005t0001g0182 a0001c0005t0001g0196 a0001c0005t0001g0215 a0001c0006t0001g0036 a0001c0006t0001g0216 a0001c0008t0001g0197 a0001c0008t0001g0214 a0001c0009t0001g0150 a0001c0023t0001g0186 a0001c0025t0001g0192 a0002c0011t0001g0217	15	232	0.0647	-5	c.-83 others(24): Show c.-83+26543_-83+26547delCCTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1134686	TTTTTG TTTTTG	T T	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02615.hp1 HG02896.hp2 others(6): Show HG01952.hp2 HG02615.hp1 HG02896.hp2 HG03195.hp2 HG03225.hp1 HG03492.hp1 HG03516.hp2 NA19043.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0001c0004 a0001c0006 others(2): Show a0001c0003 a0001c0004 a0001c0006 a0001c0013 a0002c0014	a0001c0003t0001 a0001c0004t0005 a0001c0006t0001 others(2): Show a0001c0003t0001 a0001c0004t0005 a0001c0006t0001 a0001c0013t0001 a0002c0014t0001	a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0219 others(6): Show a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0219 a0001c0004t0005g0110 a0001c0006t0001g0183 a0001c0006t0001g0210 a0001c0013t0001g0199 a0001c0013t0001g0208 a0002c0014t0001g0232	9	232	0.0388	-5	c.-82 others(24): Show c.-82-13216_-82-13212delGTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1162289	TTTGTA TTTGTA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00423.hp1 others(167): Show HG00140.hp1 HG00140.hp2 HG00423.hp1 HG00423.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01255.hp2 HG01256.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01943.hp2 HG01952.hp2 HG01978.hp1 HG01993.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03710.hp2 HG03834.hp2 HG04115.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18961.hp1 NA18961.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19065.hp2 NA19084.hp1 NA19084.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0006 a0007	a0001c0001 a0001c0002 a0001c0003 others(23): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0012 a0001c0013 a0001c0019 a0001c0020 a0001c0021 a0001c0022 a0001c0023 a0001c0024 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0003c0015 a0004c0016 a0006c0027 a0007c0018	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(33): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001 a0001c0004t0005 a0001c0005t0001 a0001c0005t0002 a0001c0006t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0009t0003 a0001c0010t0001 a0001c0012t0001 a0001c0013t0001 a0001c0019t0001 a0001c0020t0001 a0001c0021t0001 a0001c0022t0001 a0001c0023t0001 a0001c0024t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0003c0015t0001 a0004c0016t0001 a0006c0027t0001 a0007c0018t0001	a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 others(167): Show a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0126 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0171 a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0001t0001g0204 a0001c0001t0002g0124 a0001c0002t0001g0053 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0098 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0147 a0001c0002t0001g0160 a0001c0002t0001g0209 a0001c0002t0001g0227 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0004g0228 a0001c0002t0005g0050 a0001c0002t0009g0205 a0001c0003t0001g0011 a0001c0003t0001g0025 a0001c0003t0001g0026 a0001c0003t0001g0030 a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0074 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0081 a0001c0003t0001g0092 a0001c0003t0001g0112 a0001c0003t0001g0118 a0001c0003t0001g0140 a0001c0003t0001g0142 a0001c0003t0001g0144 a0001c0003t0001g0154 a0001c0003t0001g0161 a0001c0003t0001g0166 a0001c0003t0001g0168 a0001c0003t0001g0172 a0001c0003t0001g0175 a0001c0003t0001g0177 a0001c0003t0001g0219 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0003t0001g0226 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0055 a0001c0004t0001g0060 a0001c0004t0001g0065 a0001c0004t0001g0066 a0001c0004t0001g0073 a0001c0004t0001g0080 a0001c0004t0001g0083 a0001c0004t0001g0089 a0001c0004t0001g0090 a0001c0004t0001g0103 a0001c0004t0001g0123 a0001c0004t0001g0127 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0004t0005g0110 a0001c0005t0001g0005 a0001c0005t0001g0113 a0001c0005t0001g0163 a0001c0005t0001g0164 a0001c0005t0001g0180 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0207 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0005t0002g0115 a0001c0006t0001g0028 a0001c0006t0001g0036 a0001c0006t0001g0037 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0183 a0001c0006t0001g0184 a0001c0006t0001g0187 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0210 a0001c0006t0001g0213 a0001c0006t0001g0216 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0002g0178 a0001c0006t0004g0119 a0001c0007t0001g0001 a0001c0007t0001g0012 a0001c0007t0001g0017 a0001c0007t0001g0048 a0001c0007t0001g0052 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0007t0001g0146 a0001c0007t0001g0155 a0001c0007t0001g0222 a0001c0008t0001g0075 a0001c0008t0001g0120 a0001c0008t0001g0143 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0009t0001g0150 a0001c0009t0003g0051 a0001c0010t0001g0009 a0001c0010t0001g0056 a0001c0010t0001g0206 a0001c0012t0001g0085 a0001c0013t0001g0208 a0001c0019t0001g0202 a0001c0020t0001g0151 a0001c0021t0001g0231 a0001c0022t0001g0137 a0001c0023t0001g0186 a0001c0024t0001g0070 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0003c0015t0001g0007 a0003c0015t0001g0008 a0004c0016t0001g0002 a0004c0016t0001g0003 a0006c0027t0001g0191 a0007c0018t0001g0148	170	232	0.7328	-5	c.55+ others(22): Show c.55+14231_55+14235delATTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1177007	CAAAAG CAAAAG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00423.hp1 others(157): Show HG00140.hp1 HG00140.hp2 HG00423.hp1 HG00423.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01943.hp2 HG01952.hp2 HG01978.hp1 HG01993.hp1 HG02015.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp2 HG02056.hp1 HG02074.hp2 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03471.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18961.hp1 NA18961.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp2 NA19030.hp1 NA19030.hp2 NA19065.hp2 NA19084.hp1 NA19084.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0006 a0007	a0001c0001 a0001c0002 a0001c0003 others(19): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0012 a0001c0013 a0001c0019 a0001c0020 a0001c0024 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0004c0016 a0006c0027 a0007c0018	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(30): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0008 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001 a0001c0004t0005 a0001c0005t0001 a0001c0005t0002 a0001c0005t0004 a0001c0006t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0009t0003 a0001c0010t0001 a0001c0012t0001 a0001c0013t0001 a0001c0019t0001 a0001c0020t0001 a0001c0024t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0004c0016t0001 a0006c0027t0001 a0007c0018t0001	a0001c0001t0001g0013 a0001c0001t0001g0024 a0001c0001t0001g0027 others(157): Show a0001c0001t0001g0013 a0001c0001t0001g0024 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0067 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0126 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0171 a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0001t0001g0204 a0001c0001t0002g0124 a0001c0002t0001g0053 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0098 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0147 a0001c0002t0001g0160 a0001c0002t0001g0209 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0005g0050 a0001c0002t0008g0221 a0001c0002t0009g0205 a0001c0003t0001g0011 a0001c0003t0001g0025 a0001c0003t0001g0026 a0001c0003t0001g0030 a0001c0003t0001g0031 a0001c0003t0001g0040 a0001c0003t0001g0042 a0001c0003t0001g0074 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0081 a0001c0003t0001g0092 a0001c0003t0001g0101 a0001c0003t0001g0112 a0001c0003t0001g0118 a0001c0003t0001g0140 a0001c0003t0001g0142 a0001c0003t0001g0144 a0001c0003t0001g0154 a0001c0003t0001g0161 a0001c0003t0001g0168 a0001c0003t0001g0172 a0001c0003t0001g0175 a0001c0003t0001g0177 a0001c0003t0001g0219 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0003t0001g0226 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0055 a0001c0004t0001g0060 a0001c0004t0001g0066 a0001c0004t0001g0080 a0001c0004t0001g0083 a0001c0004t0001g0089 a0001c0004t0001g0090 a0001c0004t0001g0103 a0001c0004t0001g0123 a0001c0004t0001g0127 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0004t0005g0110 a0001c0005t0001g0163 a0001c0005t0001g0164 a0001c0005t0001g0180 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0203 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0005t0002g0115 a0001c0005t0004g0194 a0001c0006t0001g0028 a0001c0006t0001g0036 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0183 a0001c0006t0001g0187 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0210 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0002g0178 a0001c0006t0004g0119 a0001c0007t0001g0001 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0017 a0001c0007t0001g0048 a0001c0007t0001g0052 a0001c0007t0001g0100 a0001c0007t0001g0102 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0007t0001g0146 a0001c0007t0001g0155 a0001c0007t0001g0222 a0001c0008t0001g0075 a0001c0008t0001g0120 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0009t0001g0150 a0001c0009t0003g0051 a0001c0010t0001g0056 a0001c0012t0001g0085 a0001c0013t0001g0208 a0001c0019t0001g0202 a0001c0020t0001g0151 a0001c0024t0001g0070 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0014t0001g0220 a0002c0017t0001g0179 a0004c0016t0001g0002 a0004c0016t0001g0003 a0006c0027t0001g0191 a0007c0018t0001g0148	160	232	0.6897	-5	c.55+ others(22): Show c.55+28948_55+28952delAGAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1225696	ATTGTT ATTGTT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00733.hp1 HG01109.hp1 others(30): Show HG00642.hp1 HG00733.hp1 HG01109.hp1 HG01943.hp1 HG02145.hp2 HG02148.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp2 HG02723.hp2 HG02965.hp1 HG02970.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 NA18522.hp1 NA18906.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA20300.hp2 NA21309.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0004 others(9): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0012 a0001c0013 a0001c0020 a0002c0011 a0005c0026	a0001c0001t0001 a0001c0003t0001 a0001c0004t0002 others(11): Show a0001c0001t0001 a0001c0003t0001 a0001c0004t0002 a0001c0005t0001 a0001c0006t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0012t0001 a0001c0013t0001 a0001c0020t0001 a0002c0011t0001 a0005c0026t0001	a0001c0001t0001g0029 a0001c0001t0001g0086 a0001c0001t0001g0190 others(30): Show a0001c0001t0001g0029 a0001c0001t0001g0086 a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0157 a0001c0005t0001g0159 a0001c0005t0001g0181 a0001c0005t0001g0203 a0001c0005t0001g0207 a0001c0006t0001g0036 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0213 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0002g0178 a0001c0006t0004g0119 a0001c0007t0001g0001 a0001c0007t0001g0012 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0010 a0001c0012t0001g0104 a0001c0013t0001g0199 a0001c0020t0001g0151 a0002c0011t0001g0006 a0002c0011t0001g0217 a0005c0026t0001g0091	33	232	0.1422	-5	c.183 others(22): Show c.183-2119_183-2115delGTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	3/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245236	ACACAC ACACAC	A A	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03453.hp2 NA19043.hp2 HG02965.hp1 HG03453.hp2 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0006 a0001c0007 a0002c0011 a0001c0006 a0001c0007 a0002c0011	a0001c0006t0001 a0001c0007t0001 a0002c0011t0001 a0001c0006t0001 a0001c0007t0001 a0002c0011t0001	a0001c0006t0001g0184 a0001c0007t0001g0134 a0002c0011t0001g0217 a0001c0006t0001g0184 a0001c0007t0001g0134 a0002c0011t0001g0217	3	232	0.0129	-5	c.358 others(24): Show c.358+17244_358+17248delCACAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245271	ATATAC ATATAC	A A	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02976.hp1 HG02559.hp2 HG02976.hp1	a0001 a0002 a0001 a0002	a0001c0008 a0002c0017 a0001c0008 a0002c0017	a0001c0008t0001 a0002c0017t0001 a0001c0008t0001 a0002c0017t0001	a0001c0008t0001g0212 a0002c0017t0001g0179 a0001c0008t0001g0212 a0002c0017t0001g0179	2	232	0.0086	-5	c.358 others(24): Show c.358+17279_358+17283delTATAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245273	ATACAC ATACAC	A A	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG03239.hp2 HG01167.hp1 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0024 a0001c0002 a0001c0024	a0001c0002t0001 a0001c0024t0001 a0001c0002t0001 a0001c0024t0001	a0001c0002t0001g0099 a0001c0024t0001g0070 a0001c0002t0001g0099 a0001c0024t0001g0070	2	232	0.0086	-5	c.358 others(24): Show c.358+17281_358+17285delTACAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245275	ACACAC ACACAC	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02055.hp1 others(3): Show HG01167.hp2 HG01169.hp2 HG02055.hp1 HG02258.hp1 HG02572.hp2 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0001c0019 a0003c0015 a0001c0006 a0001c0019 a0003c0015	a0001c0006t0001 a0001c0019t0001 a0003c0015t0001 a0001c0006t0001 a0001c0019t0001 a0003c0015t0001	a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 others(3): Show a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202 a0003c0015t0001g0007 a0003c0015t0001g0008	6	232	0.0259	-5	c.358 others(24): Show c.358+17283_358+17287delCACAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245290	TATAAC TATAAC	T T	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG02602.hp2 HG02615.hp1 others(1): Show HG01517.hp2 HG02602.hp2 HG02615.hp1 HG03139.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0007 a0001c0008 others(1): Show a0001c0002 a0001c0007 a0001c0008 a0002c0014	a0001c0002t0001 a0001c0007t0002 a0001c0008t0001 others(1): Show a0001c0002t0001 a0001c0007t0002 a0001c0008t0001 a0002c0014t0001	a0001c0002t0001g0068 a0001c0007t0002g0032 a0001c0008t0001g0010 others(1): Show a0001c0002t0001g0068 a0001c0007t0002g0032 a0001c0008t0001g0010 a0002c0014t0001g0232	4	232	0.0172	-5	c.358 others(24): Show c.358+17301_358+17305delACATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1262618	TTGAAA TTGAAA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01884.hp2 others(9): Show HG01167.hp2 HG01169.hp2 HG01884.hp2 HG02055.hp1 HG02109.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02572.hp2 HG03471.hp2 HG06807.hp2 NA18522.hp2	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0005 a0001c0006 a0001c0019 others(3): Show a0001c0005 a0001c0006 a0001c0019 a0001c0021 a0003c0015 a0006c0027	a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 others(4): Show a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0019t0001 a0001c0021t0001 a0003c0015t0001 a0006c0027t0001	a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 others(9): Show a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0004g0194 a0001c0006t0001g0195 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202 a0001c0021t0001g0231 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	12	232	0.0517	-5	c.359 others(24): Show c.359-15790_359-15786delATGAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1268994	TAAATA TAAATA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02055.hp1 others(2): Show HG01167.hp2 HG01169.hp2 HG02055.hp1 HG02258.hp1 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0001c0019 a0003c0015 a0001c0006 a0001c0019 a0003c0015	a0001c0006t0001 a0001c0019t0001 a0003c0015t0001 a0001c0006t0001 a0001c0019t0001 a0003c0015t0001	a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202 others(2): Show a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202 a0003c0015t0001g0007 a0003c0015t0001g0008	5	232	0.0216	-5	c.359 others(22): Show c.359-9410_359-9406delTAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1277346	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01258.hp2 HG02055.hp2 others(6): Show HG01123.hp2 HG01258.hp2 HG02055.hp2 HG02148.hp1 HG02698.hp1 HG02717.hp1 HG03130.hp1 HG03579.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0007 others(1): Show a0001c0001 a0001c0005 a0001c0007 a0001c0008	a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 others(2): Show a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 a0001c0007t0001 a0001c0008t0001	a0001c0001t0001g0029 a0001c0001t0001g0105 a0001c0005t0001g0016 others(6): Show a0001c0001t0001g0029 a0001c0001t0001g0105 a0001c0005t0001g0016 a0001c0005t0001g0106 a0001c0005t0002g0115 a0001c0007t0001g0012 a0001c0007t0001g0222 a0001c0008t0001g0043 a0001c0008t0001g0218	9	232	0.0388	-5	c.359 others(22): Show c.359-1040_359-1036delTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1297437	TAAAAC TAAAAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01952.hp2 HG02486.hp2 others(7): Show HG01884.hp2 HG01952.hp2 HG02486.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02922.hp2 HG02976.hp1 HG03139.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0005 a0001c0006 others(3): Show a0001c0002 a0001c0005 a0001c0006 a0002c0011 a0002c0014 a0002c0017	a0001c0002t0004 a0001c0005t0001 a0001c0006t0001 others(3): Show a0001c0002t0004 a0001c0005t0001 a0001c0006t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001	a0001c0002t0004g0228 a0001c0005t0001g0182 a0001c0005t0001g0188 others(7): Show a0001c0002t0004g0228 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0196 a0001c0005t0001g0230 a0001c0006t0001g0183 a0002c0011t0001g0006 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179	10	232	0.0431	-5	c.659 others(20): Show c.659-448_659-444delACAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	6/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1319833	GAAAAT GAAAAT	G G	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02257.hp2 HG02280.hp2 others(11): Show HG02055.hp2 HG02257.hp2 HG02280.hp2 HG02559.hp2 HG02630.hp2 HG02896.hp1 HG02896.hp2 HG02970.hp2 HG03225.hp1 HG03516.hp2 HG03579.hp1 NA18954.hp1 NA18969.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0013 a0001c0021 a0002c0011	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(8): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0010t0001 a0001c0013t0001 a0001c0021t0001 a0002c0011t0001	a0001c0001t0001g0047 a0001c0002t0001g0209 a0001c0003t0001g0081 others(11): Show a0001c0001t0001g0047 a0001c0002t0001g0209 a0001c0003t0001g0081 a0001c0003t0001g0219 a0001c0005t0001g0180 a0001c0006t0001g0036 a0001c0006t0001g0210 a0001c0007t0001g0012 a0001c0007t0001g0222 a0001c0008t0001g0212 a0001c0010t0001g0206 a0001c0013t0001g0208 a0001c0021t0001g0231 a0002c0011t0001g0217	14	232	0.0603	-5	c.762 others(22): Show c.762-1777_762-1773delTAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1336172	TAAATA TAAATA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp2 HG02280.hp1 others(14): Show HG01884.hp1 HG02109.hp2 HG02280.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02723.hp1 HG02896.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03453.hp1 HG03471.hp2 HG03516.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 others(4): Show a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0023	a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 others(5): Show a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0023t0001	a0001c0002t0001g0209 a0001c0003t0001g0219 a0001c0005t0001g0180 others(14): Show a0001c0002t0001g0209 a0001c0003t0001g0219 a0001c0005t0001g0180 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0207 a0001c0005t0004g0194 a0001c0006t0001g0037 a0001c0006t0001g0210 a0001c0006t0001g0216 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0143 a0001c0008t0001g0197 a0001c0008t0001g0218 a0001c0023t0001g0186	17	232	0.0733	-5	c.136 others(24): Show c.1364+6253_1364+6257delAAATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1354251	TTATGA TTATGA	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00642.hp1 HG00642.hp2 others(71): Show HG00609.hp1 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG01074.hp1 HG01099.hp2 HG01109.hp1 HG01123.hp1 HG01496.hp2 HG01884.hp1 HG01952.hp2 HG01978.hp2 HG01993.hp2 HG02015.hp1 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02257.hp1 HG02258.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03516.hp1 HG03579.hp1 HG03927.hp2 NA18906.hp1 NA18906.hp2 NA18948.hp2 NA18980.hp1 NA19000.hp2 NA19030.hp1 NA19043.hp2 NA19065.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0006	a0001c0001 a0001c0002 a0001c0003 others(13): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0005c0026 a0006c0027	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(19): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0008 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0002 a0001c0006t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0010t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0005c0026t0001 a0006c0027t0001	a0001c0001t0001g0033 a0001c0001t0001g0067 a0001c0001t0001g0097 others(71): Show a0001c0001t0001g0033 a0001c0001t0001g0067 a0001c0001t0001g0097 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0129 a0001c0001t0001g0141 a0001c0001t0001g0152 a0001c0001t0001g0171 a0001c0001t0001g0198 a0001c0002t0001g0094 a0001c0002t0001g0098 a0001c0002t0001g0122 a0001c0002t0001g0227 a0001c0002t0003g0069 a0001c0002t0003g0079 a0001c0002t0008g0221 a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0101 a0001c0003t0001g0177 a0001c0004t0001g0034 a0001c0004t0001g0065 a0001c0004t0001g0132 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0004 a0001c0005t0001g0005 a0001c0005t0001g0016 a0001c0005t0001g0078 a0001c0005t0001g0157 a0001c0005t0001g0159 a0001c0005t0001g0163 a0001c0005t0001g0164 a0001c0005t0001g0180 a0001c0005t0001g0181 a0001c0005t0001g0196 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0005t0002g0019 a0001c0005t0002g0115 a0001c0006t0001g0028 a0001c0006t0001g0036 a0001c0006t0001g0162 a0001c0006t0001g0183 a0001c0006t0001g0185 a0001c0006t0001g0187 a0001c0006t0001g0195 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0002g0178 a0001c0006t0004g0119 a0001c0007t0001g0012 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0007t0001g0222 a0001c0008t0001g0010 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0009t0001g0150 a0001c0010t0001g0009 a0001c0010t0001g0206 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0005c0026t0001g0091 a0006c0027t0001g0191	74	232	0.3190	-5	c.149 others(24): Show c.1492+1803_1492+1807delTGATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	12/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1374127	TAAAAC TAAAAC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG00733.hp1 others(27): Show HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00735.hp2 HG01074.hp1 HG01109.hp1 HG01109.hp2 HG01496.hp2 HG01884.hp2 HG01952.hp2 HG01993.hp2 HG02280.hp2 HG02451.hp2 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02896.hp2 HG02922.hp2 HG02976.hp1 HG03139.hp1 HG03209.hp2 HG03471.hp2 HG03927.hp2 NA18522.hp1 NA19030.hp2 NA20129.hp2 NA20752.hp1 NA21309.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0004 others(7): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0020 a0002c0014 a0002c0017 a0005c0026	a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 others(10): Show a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0002 a0001c0006t0001 a0001c0006t0002 a0001c0008t0001 a0001c0020t0001 a0002c0014t0001 a0002c0017t0001 a0005c0026t0001	a0001c0001t0001g0067 a0001c0001t0001g0097 a0001c0003t0001g0031 others(27): Show a0001c0001t0001g0067 a0001c0001t0001g0097 a0001c0003t0001g0031 a0001c0004t0001g0065 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0004 a0001c0005t0001g0016 a0001c0005t0001g0078 a0001c0005t0001g0113 a0001c0005t0001g0157 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0189 a0001c0005t0001g0196 a0001c0005t0001g0230 a0001c0005t0002g0019 a0001c0006t0001g0028 a0001c0006t0001g0036 a0001c0006t0001g0111 a0001c0006t0001g0183 a0001c0006t0001g0210 a0001c0006t0001g0213 a0001c0006t0002g0178 a0001c0008t0001g0212 a0001c0020t0001g0151 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0005c0026t0001g0091	30	232	0.1293	-5	c.209 others(20): Show c.2095+62_2095+66delAACAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	16/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1382584	AGAAGT AGAAGT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02258.hp1 others(3): Show HG02055.hp1 HG02109.hp1 HG02258.hp1 HG03130.hp2 HG03225.hp1 NA19043.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0013 a0001c0025 a0003c0015 others(1): Show a0001c0013 a0001c0025 a0003c0015 a0006c0027	a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 others(1): Show a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 a0006c0027t0001	a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 others(3): Show a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	6	232	0.0259	-5	c.216 others(22): Show c.2167-357_2167-353delGAAGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	17/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384713	CATACT CATACT	C C	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03669.hp1 HG03710.hp2 HG03492.hp2 HG03669.hp1 HG03710.hp2	a0001 a0001	a0001c0009 a0001c0010 a0001c0009 a0001c0010	a0001c0009t0001 a0001c0009t0003 a0001c0010t0001 a0001c0009t0001 a0001c0009t0003 a0001c0010t0001	a0001c0009t0001g0114 a0001c0009t0003g0051 a0001c0010t0001g0056 a0001c0009t0001g0114 a0001c0009t0003g0051 a0001c0010t0001g0056	3	232	0.0129	-5	c.251 others(22): Show c.2518-894_2518-890delCTATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1385353	ATACTT ATACTT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02258.hp1 others(3): Show HG02055.hp1 HG02109.hp1 HG02258.hp1 HG03130.hp2 HG03225.hp1 NA19043.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0013 a0001c0025 a0003c0015 others(1): Show a0001c0013 a0001c0025 a0003c0015 a0006c0027	a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 others(1): Show a0001c0013t0001 a0001c0025t0001 a0003c0015t0001 a0006c0027t0001	a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 others(3): Show a0001c0013t0001g0199 a0001c0013t0001g0208 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	6	232	0.0259	-5	c.251 others(22): Show c.2518-255_2518-251delCTTTA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1393570	AAAAAG AAAAAG	A A	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00609.hp2 HG00639.hp1 others(42): Show HG00423.hp2 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp2 HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01123.hp2 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01515.hp2 HG01517.hp1 HG01943.hp2 HG02015.hp2 HG02027.hp2 HG02056.hp2 HG02148.hp1 HG02155.hp1 HG02451.hp2 HG02602.hp1 HG03130.hp1 HG03492.hp1 HG03492.hp2 HG03579.hp2 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp2 HG03834.hp2 HG04204.hp2 HG06807.hp1 NA18906.hp2 NA18953.hp1 NA18954.hp1 NA19003.hp1 NA19065.hp2 NA20129.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(5): Show a0001c0001 a0001c0002 a0001c0004 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0022	a0001c0001t0001 a0001c0001t0002 a0001c0002t0009 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0009 a0001c0004t0001 a0001c0004t0005 a0001c0007t0001 a0001c0008t0001 a0001c0009t0001 a0001c0009t0003 a0001c0010t0001 a0001c0022t0001	a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 others(42): Show a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0067 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0093 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0107 a0001c0001t0001g0126 a0001c0001t0001g0149 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0173 a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0001t0001g0204 a0001c0001t0002g0124 a0001c0002t0009g0205 a0001c0004t0001g0022 a0001c0004t0001g0055 a0001c0004t0001g0058 a0001c0004t0001g0060 a0001c0004t0001g0061 a0001c0004t0001g0065 a0001c0004t0001g0066 a0001c0004t0001g0073 a0001c0004t0001g0083 a0001c0004t0001g0123 a0001c0004t0001g0127 a0001c0004t0001g0158 a0001c0004t0005g0110 a0001c0007t0001g0100 a0001c0008t0001g0043 a0001c0008t0001g0218 a0001c0009t0001g0114 a0001c0009t0003g0051 a0001c0010t0001g0056 a0001c0022t0001g0137	45	232	0.1940	-5	c.270 others(24): Show c.2704+7777_2704+7781delAGAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	20/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1398706	ATTCGT ATTCGT	A A	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG03834.hp1 NA18948.hp2 others(7): Show HG02074.hp2 HG03834.hp1 NA18948.hp2 NA18951.hp1 NA18953.hp2 NA18969.hp2 NA18980.hp1 NA19000.hp2 NA19065.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 a0001c0001t0001 a0001c0003t0001 a0001c0004t0001	a0001c0001t0001g0044 a0001c0001t0001g0088 a0001c0001t0001g0129 others(7): Show a0001c0001t0001g0044 a0001c0001t0001g0088 a0001c0001t0001g0129 a0001c0001t0001g0141 a0001c0003t0001g0092 a0001c0004t0001g0034 a0001c0004t0001g0080 a0001c0004t0001g0089 a0001c0004t0001g0128 a0001c0004t0001g0132	10	232	0.0431	-5	c.270 others(24): Show c.2705-2723_2705-2719delGTTTC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	20/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146121119	CTTTTT CTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02896.hp1 HG02976.hp1 others(4): Show HG00735.hp2 HG02896.hp1 HG02976.hp1 HG02976.hp2 HG03139.hp2 NA18522.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0001c0010 others(4): Show a0001c0001 a0001c0003 a0001c0010 a0001c0011 a0001c0015 a0001c0019 a0005c0020	a0001c0001t0007 a0001c0003t0020 a0001c0010t0002 others(4): Show a0001c0001t0007 a0001c0003t0020 a0001c0010t0002 a0001c0011t0016 a0001c0015t0001 a0001c0019t0006 a0005c0020t0005	a0001c0001t0007g0018 a0001c0003t0020g0017 a0001c0010t0002g0014 others(4): Show a0001c0001t0007g0018 a0001c0003t0020g0017 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0015t0001g0011 a0001c0019t0006g0015 a0005c0020t0005g0016	7	40	0.1750	-5	c.97+ others(20): Show c.97+4169_97+4173delTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar

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