Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHRM2_chr7_136863652_137025213	136971814	CAAATTT CAAATTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00323.hp2 others(134): Show HG00099.hp1 HG00099.hp2 HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp2 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp1 HG01168.hp1 HG01169.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01891.hp2 HG01943.hp1 HG01952.hp2 HG01978.hp1 HG02109.hp2 HG02145.hp2 HG02148.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02523.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02683.hp2 HG02717.hp2 HG02735.hp1 HG02735.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03471.hp2 HG03516.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp2 HG03688.hp2 HG03704.hp1 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18747.hp1 NA18941.hp1 NA18942.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18947.hp1 NA18950.hp2 NA18954.hp1 NA18956.hp1 NA18957.hp2 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18966.hp2 NA18968.hp1 NA18970.hp1 NA18971.hp2 NA18973.hp2 NA18975.hp1 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18995.hp1 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19012.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19057.hp2 NA19060.hp2 NA19064.hp1 NA19065.hp1 NA19075.hp2 NA19085.hp1 NA19087.hp2 NA19240.hp1 NA19240.hp2 NA20752.hp2 NA20905.hp2 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0006	a0001c0001 a0001c0002 a0001c0010 others(3): Show a0001c0001 a0001c0002 a0001c0010 a0002c0004 a0003c0006 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(44): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0024 a0001c0001t0027 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0043 a0001c0001t0048 a0001c0001t0050 a0001c0001t0059 a0001c0001t0061 a0001c0001t0064 a0001c0001t0065 a0001c0001t0066 a0001c0001t0068 a0001c0001t0069 a0001c0001t0071 a0001c0001t0072 a0001c0001t0074 a0001c0001t0077 a0001c0001t0078 a0001c0001t0080 a0001c0001t0082 a0001c0002t0002 a0001c0010t0004 a0002c0004t0002 a0003c0006t0014 a0006c0007t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0005 others(133): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0157 a0001c0001t0001g0166 a0001c0001t0001g0168 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0196 a0001c0001t0001g0254 a0001c0001t0001g0282 a0001c0001t0001g0284 a0001c0001t0001g0299 a0001c0001t0001g0314 a0001c0001t0002g0011 a0001c0001t0002g0092 a0001c0001t0002g0116 a0001c0001t0002g0126 a0001c0001t0002g0128 a0001c0001t0002g0160 a0001c0001t0002g0164 a0001c0001t0002g0174 a0001c0001t0002g0176 a0001c0001t0002g0181 a0001c0001t0002g0187 a0001c0001t0002g0293 a0001c0001t0003g0120 a0001c0001t0003g0220 a0001c0001t0003g0248 a0001c0001t0003g0249 a0001c0001t0003g0273 a0001c0001t0004g0076 a0001c0001t0004g0077 a0001c0001t0004g0080 a0001c0001t0004g0184 a0001c0001t0004g0198 a0001c0001t0004g0199 a0001c0001t0004g0271 a0001c0001t0005g0021 a0001c0001t0005g0042 a0001c0001t0005g0127 a0001c0001t0005g0162 a0001c0001t0005g0172 a0001c0001t0005g0173 a0001c0001t0005g0178 a0001c0001t0005g0179 a0001c0001t0005g0291 a0001c0001t0006g0213 a0001c0001t0006g0275 a0001c0001t0006g0276 a0001c0001t0006g0278 a0001c0001t0007g0088 a0001c0001t0007g0132 a0001c0001t0007g0141 a0001c0001t0007g0204 a0001c0001t0007g0285 a0001c0001t0007g0287 a0001c0001t0007g0288 a0001c0001t0007g0300 a0001c0001t0007g0301 a0001c0001t0007g0302 a0001c0001t0007g0305 a0001c0001t0007g0316 a0001c0001t0008g0072 a0001c0001t0008g0073 a0001c0001t0008g0074 a0001c0001t0008g0083 a0001c0001t0008g0084 a0001c0001t0008g0086 a0001c0001t0008g0087 a0001c0001t0008g0089 a0001c0001t0008g0091 a0001c0001t0008g0131 a0001c0001t0008g0272 a0001c0001t0009g0215 a0001c0001t0009g0295 a0001c0001t0009g0296 a0001c0001t0009g0297 a0001c0001t0009g0298 a0001c0001t0009g0304 a0001c0001t0010g0025 a0001c0001t0010g0026 a0001c0001t0010g0065 a0001c0001t0010g0066 a0001c0001t0010g0250 a0001c0001t0014g0052 a0001c0001t0014g0071 a0001c0001t0016g0112 a0001c0001t0016g0255 a0001c0001t0017g0277 a0001c0001t0019g0039 a0001c0001t0020g0099 a0001c0001t0020g0100 a0001c0001t0021g0045 a0001c0001t0024g0221 a0001c0001t0027g0018 a0001c0001t0027g0020 a0001c0001t0030g0129 a0001c0001t0030g0205 a0001c0001t0031g0010 a0001c0001t0031g0096 a0001c0001t0032g0108 a0001c0001t0034g0110 a0001c0001t0035g0114 a0001c0001t0035g0115 a0001c0001t0036g0056 a0001c0001t0036g0059 a0001c0001t0037g0053 a0001c0001t0037g0054 a0001c0001t0043g0246 a0001c0001t0048g0049 a0001c0001t0050g0085 a0001c0001t0059g0134 a0001c0001t0061g0155 a0001c0001t0064g0003 a0001c0001t0065g0175 a0001c0001t0066g0044 a0001c0001t0068g0167 a0001c0001t0069g0163 a0001c0001t0071g0306 a0001c0001t0072g0244 a0001c0001t0074g0098 a0001c0001t0077g0107 a0001c0001t0078g0095 a0001c0001t0080g0097 a0001c0001t0082g0159 a0001c0002t0002g0036 a0001c0010t0004g0081 a0002c0004t0002g0165 a0002c0004t0002g0169 a0003c0006t0014g0259 a0006c0007t0001g0156	137	320	0.4281	-6	c.-12 others(27): Show c.-124-20369_-124-20364delTTTAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239385936	AGTGTGT AGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG01515.hp2 HG02040.hp2 others(13): Show HG01243.hp1 HG01515.hp2 HG02040.hp2 HG02109.hp2 HG02258.hp1 HG02723.hp1 HG02818.hp1 HG03098.hp2 HG03471.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18939.hp2 NA19043.hp1 NA19068.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0016 a0001c0001t0026 a0001c0001t0028 a0001c0001t0034 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0060	a0001c0001t0001g0002 a0001c0001t0003g0092 a0001c0001t0004g0016 others(13): Show a0001c0001t0001g0002 a0001c0001t0003g0092 a0001c0001t0004g0016 a0001c0001t0005g0053 a0001c0001t0007g0055 a0001c0001t0009g0045 a0001c0001t0009g0111 a0001c0001t0012g0028 a0001c0001t0016g0114 a0001c0001t0026g0091 a0001c0001t0028g0017 a0001c0001t0034g0089 a0001c0001t0036g0094 a0001c0001t0037g0029 a0001c0001t0038g0032 a0001c0001t0060g0001	16	116	0.1379	-6	c.-18 others(17): Show c.-1811_-1806delGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		631		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404404	GAAAGAA GAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA18906.hp1 HG02109.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0058 a0001c0001t0009 a0001c0001t0058	a0001c0001t0009g0045 a0001c0001t0058g0011 a0001c0001t0009g0045 a0001c0001t0058g0011	2	116	0.0172	-6	c.-52 others(27): Show c.-521+17185_-521+17190delAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404719	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02738.hp2 homoSapiens_chm13v2.hp1 HG01109.hp1 HG02738.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0059 a0001c0001t0002 a0001c0001t0008 a0001c0001t0059	a0001c0001t0002g0074 a0001c0001t0008g0067 a0001c0001t0059g0062 a0001c0001t0002g0074 a0001c0001t0008g0067 a0001c0001t0059g0062	3	116	0.0259	-6	c.-52 others(27): Show c.-521+17525_-521+17530delATATAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239407417	TAGAGAG TAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG06807.hp2 HG02258.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0009 a0001c0005t0048 a0001c0001t0009 a0001c0005t0048	a0001c0001t0009g0111 a0001c0005t0048g0081 a0001c0001t0009g0111 a0001c0005t0048g0081	2	116	0.0172	-6	c.-52 others(27): Show c.-521+20209_-521+20214delAGAGAG	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239479190	CCACACA CCACACA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp2 HG00639.hp2 others(13): Show HG00438.hp1 HG00609.hp2 HG00639.hp2 HG01109.hp1 HG01243.hp2 HG01256.hp2 HG01258.hp1 HG02451.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03831.hp1 HG06807.hp1 NA18939.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0021 a0001c0001t0028 a0001c0001t0032 a0001c0001t0042 a0001c0001t0054 a0001c0001t0056	a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0002g0037 others(13): Show a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0002g0074 a0001c0001t0003g0092 a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0005g0077 a0001c0001t0021g0019 a0001c0001t0021g0093 a0001c0001t0028g0017 a0001c0001t0032g0086 a0001c0001t0042g0080 a0001c0001t0054g0096 a0001c0001t0056g0079	16	116	0.1379	-6	c.-52 others(27): Show c.-520-13484_-520-13479delCACACA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239488714	CAAAAAA CAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp2 HG01255.hp2 others(17): Show HG01106.hp2 HG01243.hp2 HG01255.hp2 HG01258.hp1 HG02615.hp1 HG02738.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03209.hp1 HG03831.hp1 HG04115.hp2 HG06807.hp2 NA18906.hp2 NA18943.hp2 NA18955.hp2 NA19030.hp1 NA19068.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0017 a0001c0001t0019 a0001c0001t0024 a0001c0001t0040 a0001c0001t0042 a0001c0001t0044 a0001c0001t0056 a0001c0001t0057 a0001c0001t0059	a0001c0001t0001g0009 a0001c0001t0002g0037 a0001c0001t0003g0057 others(17): Show a0001c0001t0001g0009 a0001c0001t0002g0037 a0001c0001t0003g0057 a0001c0001t0004g0064 a0001c0001t0005g0073 a0001c0001t0009g0111 a0001c0001t0013g0078 a0001c0001t0013g0085 a0001c0001t0014g0075 a0001c0001t0014g0095 a0001c0001t0016g0114 a0001c0001t0017g0004 a0001c0001t0019g0025 a0001c0001t0024g0088 a0001c0001t0040g0102 a0001c0001t0042g0080 a0001c0001t0044g0104 a0001c0001t0056g0079 a0001c0001t0057g0084 a0001c0001t0059g0062	20	116	0.1724	-6	c.-52 others(25): Show c.-520-3963_-520-3958delAAAAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239496510	AGTGTGT AGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00609.hp2 others(16): Show HG00140.hp1 HG00438.hp1 HG00609.hp2 HG01256.hp2 HG01258.hp1 HG02109.hp1 HG02258.hp2 HG02451.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03195.hp2 HG03831.hp1 HG06807.hp1 NA18939.hp2 NA20129.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0021 a0001c0001t0028 a0001c0001t0032 a0001c0001t0039 a0001c0001t0040 a0001c0001t0042 a0001c0001t0051 a0001c0001t0054 a0001c0001t0055 a0001c0001t0058 a0001c0005t0048	a0001c0001t0001g0005 a0001c0001t0001g0083 a0001c0001t0002g0037 others(16): Show a0001c0001t0001g0005 a0001c0001t0001g0083 a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0003g0092 a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0005g0077 a0001c0001t0021g0093 a0001c0001t0028g0017 a0001c0001t0032g0086 a0001c0001t0039g0112 a0001c0001t0040g0102 a0001c0001t0042g0080 a0001c0001t0051g0034 a0001c0001t0054g0096 a0001c0001t0055g0113 a0001c0001t0058g0011 a0001c0005t0048g0081	19	116	0.1638	-6	c.-42 others(25): Show c.-422+3732_-422+3737delGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239505259	GGATGAT GGATGAT	G G	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG03471.hp2 HG03710.hp1 others(2): Show HG01433.hp1 HG03471.hp2 HG03710.hp1 NA18955.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0038	a0001c0001t0001g0105 a0001c0001t0002g0061 a0001c0001t0005g0053 others(2): Show a0001c0001t0001g0105 a0001c0001t0002g0061 a0001c0001t0005g0053 a0001c0001t0007g0060 a0001c0001t0038g0032	5	116	0.0431	-6	c.-42 others(27): Show c.-422+12495_-422+12500delGATGAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239531639	ATTTTTT ATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03239.hp2 NA18943.hp2 others(2): Show HG03139.hp1 HG03239.hp2 NA18943.hp2 NA18955.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0020 a0001c0001t0001 a0001c0001t0004 a0001c0001t0020	a0001c0001t0001g0009 a0001c0001t0001g0052 a0001c0001t0001g0105 others(2): Show a0001c0001t0001g0009 a0001c0001t0001g0052 a0001c0001t0001g0105 a0001c0001t0004g0016 a0001c0001t0020g0021	5	116	0.0431	-6	c.-42 others(27): Show c.-421-13970_-421-13965delTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239552627	ATATTAT ATATTAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp1 HG01109.hp2 others(2): Show HG00140.hp1 HG00639.hp1 HG01109.hp2 HG01261.hp2 HG02258.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0004 a0001c0001 a0001c0005 a0003c0004	a0001c0001t0015 a0001c0001t0018 a0001c0001t0051 others(2): Show a0001c0001t0015 a0001c0001t0018 a0001c0001t0051 a0001c0005t0048 a0003c0004t0041	a0001c0001t0015g0063 a0001c0001t0018g0042 a0001c0001t0051g0034 others(2): Show a0001c0001t0015g0063 a0001c0001t0018g0042 a0001c0001t0051g0034 a0001c0005t0048g0081 a0003c0004t0041g0043	5	116	0.0431	-6	c.-31 others(25): Show c.-313+6908_-313+6913delTTATTA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239559263	CCTGAGT CCTGAGT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01109.hp2 HG01261.hp2 HG00639.hp1 HG01109.hp2 HG01261.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0015 a0001c0001t0018 a0003c0004t0041 a0001c0001t0015 a0001c0001t0018 a0003c0004t0041	a0001c0001t0015g0063 a0001c0001t0018g0042 a0003c0004t0041g0043 a0001c0001t0015g0063 a0001c0001t0018g0042 a0003c0004t0041g0043	3	116	0.0259	-6	c.-31 others(27): Show c.-313+13516_-313+13521delTGAGTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239562577	GATTATT GATTATT	G G	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02735.hp2 HG03710.hp2 others(1): Show HG01346.hp2 HG02735.hp2 HG03710.hp2 NA18939.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0001t0050	a0001c0001t0002g0048 a0001c0001t0003g0047 a0001c0001t0010g0103 others(1): Show a0001c0001t0002g0048 a0001c0001t0003g0047 a0001c0001t0010g0103 a0001c0001t0050g0015	4	116	0.0345	-6	c.-31 others(27): Show c.-313+16841_-313+16846delATTATT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239580258	TCACACA TCACACA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00609.hp2 HG00639.hp2 others(18): Show HG00140.hp2 HG00609.hp2 HG00639.hp2 HG01106.hp2 HG01243.hp1 HG01255.hp2 HG01515.hp1 HG02109.hp2 HG02451.hp1 HG02451.hp2 HG02723.hp1 HG02735.hp1 HG02818.hp2 HG03139.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04115.hp2 NA18939.hp1 NA18944.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0012 a0001c0001t0026 a0001c0001t0027 a0001c0001t0033 a0001c0001t0034 a0001c0001t0044 a0001c0001t0047 a0001c0001t0049 a0001c0001t0057	a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0052 others(18): Show a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0052 a0001c0001t0001g0083 a0001c0001t0001g0109 a0001c0001t0002g0006 a0001c0001t0002g0048 a0001c0001t0003g0057 a0001c0001t0004g0024 a0001c0001t0005g0077 a0001c0001t0006g0003 a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0001t0026g0091 a0001c0001t0027g0020 a0001c0001t0033g0018 a0001c0001t0034g0089 a0001c0001t0044g0104 a0001c0001t0047g0070 a0001c0001t0049g0108 a0001c0001t0057g0084	21	116	0.1810	-6	c.-31 others(27): Show c.-313+34554_-313+34559delCACACA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239585052	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00609.hp1 HG02040.hp2 others(2): Show HG00438.hp2 HG00609.hp1 HG02040.hp2 HG02083.hp1 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0002c0002t0002	a0001c0001t0001g0002 a0001c0001t0001g0058 a0001c0001t0002g0059 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0058 a0001c0001t0002g0059 a0001c0001t0009g0038 a0002c0002t0002g0012	5	116	0.0431	-6	c.-31 others(27): Show c.-313+39320_-313+39325delATATAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239589638	CTATATA CTATATA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01255.hp2 HG01433.hp1 others(15): Show HG00738.hp2 HG01255.hp2 HG01433.hp1 HG01981.hp1 HG02735.hp2 HG02738.hp2 HG03139.hp1 HG03239.hp1 HG03710.hp2 HG03831.hp2 NA18943.hp1 NA18943.hp2 NA18955.hp1 NA19000.hp2 NA19012.hp2 NA19030.hp1 NA19068.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(10): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0020 a0001c0001t0025 a0001c0001t0043 a0001c0001t0047 a0001c0001t0050 a0001c0001t0059 a0001c0001t0061	a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0105 others(15): Show a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0105 a0001c0001t0003g0057 a0001c0001t0003g0115 a0001c0001t0004g0016 a0001c0001t0004g0030 a0001c0001t0005g0073 a0001c0001t0007g0060 a0001c0001t0010g0103 a0001c0001t0010g0110 a0001c0001t0020g0021 a0001c0001t0025g0097 a0001c0001t0043g0046 a0001c0001t0047g0070 a0001c0001t0050g0015 a0001c0001t0059g0062 a0001c0001t0061g0027	18	116	0.1552	-6	c.-31 others(27): Show c.-312-42559_-312-42554delTATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239634345	AATAAAG AATAAAG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00738.hp1 NA21309.hp2 HG00140.hp1 HG00738.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0051 a0001c0001t0001 a0001c0001t0002 a0001c0001t0051	a0001c0001t0001g0083 a0001c0001t0002g0107 a0001c0001t0051g0034 a0001c0001t0001g0083 a0001c0001t0002g0107 a0001c0001t0051g0034	3	116	0.0259	-6	c.-25 others(25): Show c.-250+2063_-250+2068delAAGATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239662105	ATGTGTG ATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 NA18906.hp2 HG03239.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0014 a0001c0001t0001 a0001c0001t0014	a0001c0001t0001g0052 a0001c0001t0014g0095 a0001c0001t0001g0052 a0001c0001t0014g0095	2	116	0.0172	-6	c.-24 others(27): Show c.-249-16047_-249-16042delGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239662893	CTCTTCT CTCTTCT	C C	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02735.hp1 HG02040.hp2 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0049 a0001c0001t0001 a0001c0001t0049	a0001c0001t0001g0002 a0001c0001t0049g0108 a0001c0001t0001g0002 a0001c0001t0049g0108	2	116	0.0172	-6	c.-24 others(27): Show c.-249-15259_-249-15254delTCTTCT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239684742	AAGAAAG AAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG02451.hp1 NA21309.hp1 HG01515.hp2 HG02451.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0036 a0001c0001t0005 a0001c0001t0007 a0001c0001t0036	a0001c0001t0005g0077 a0001c0001t0007g0055 a0001c0001t0036g0094 a0001c0001t0005g0077 a0001c0001t0007g0055 a0001c0001t0036g0094	3	116	0.0259	-6	c.-14 others(25): Show c.-147+6462_-147+6467delGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239688180	TATACAC TATACAC	T T	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG03041.hp2 HG03831.hp1 others(5): Show HG01255.hp2 HG03041.hp2 HG03831.hp1 NA18939.hp1 NA18955.hp2 NA19012.hp1 NA19030.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0013 a0001c0001t0017 a0001c0001t0021 a0001c0001t0035	a0001c0001t0002g0048 a0001c0001t0003g0057 a0001c0001t0004g0064 others(5): Show a0001c0001t0002g0048 a0001c0001t0003g0057 a0001c0001t0004g0064 a0001c0001t0013g0078 a0001c0001t0017g0004 a0001c0001t0017g0050 a0001c0001t0021g0019 a0001c0001t0035g0026	8	116	0.0690	-6	c.-14 others(25): Show c.-147+9907_-147+9912delACACAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239697497	CAGAAGG CAGAAGG	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02723.hp1 HG02818.hp2 HG02258.hp2 HG02723.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0012 a0001c0005t0048 a0001c0001t0012 a0001c0005t0048	a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0005t0048g0081 a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0005t0048g0081	3	116	0.0259	-6	c.-14 others(27): Show c.-147+19215_-147+19220delGAGAAG	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239736388	AAATAAT AAATAAT	A A	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01258.hp1 HG01433.hp2 others(4): Show HG01256.hp2 HG01258.hp1 HG01433.hp2 HG01515.hp2 HG02451.hp1 HG02818.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(3): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0036 a0001c0001t0045 a0001c0001t0060	a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0005g0077 others(4): Show a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0005g0077 a0001c0001t0007g0055 a0001c0001t0036g0094 a0001c0001t0045g0014 a0001c0001t0060g0001	7	116	0.0603	-6	c.-14 others(27): Show c.-147+58114_-147+58119delATAATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239766672	TATATAG TATATAG	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01255.hp1 HG01258.hp2 others(9): Show HG00438.hp2 HG01255.hp1 HG01258.hp2 HG02723.hp2 HG02735.hp2 HG03195.hp1 HG03209.hp1 HG04115.hp1 NA18943.hp1 NA18944.hp1 NA19000.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0018 a0001c0001t0019 a0001c0001t0030 a0001c0001t0050	a0001c0001t0002g0006 a0001c0001t0002g0059 a0001c0001t0003g0039 others(9): Show a0001c0001t0002g0006 a0001c0001t0002g0059 a0001c0001t0003g0039 a0001c0001t0004g0030 a0001c0001t0005g0073 a0001c0001t0010g0031 a0001c0001t0010g0110 a0001c0001t0011g0087 a0001c0001t0018g0022 a0001c0001t0019g0025 a0001c0001t0030g0023 a0001c0001t0050g0015	12	116	0.1035	-6	c.-14 others(27): Show c.-146-60538_-146-60533delGATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239807818	GCACACA GCACACA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00738.hp2 HG01243.hp1 others(33): Show HG00140.hp2 HG00738.hp2 HG01243.hp1 HG01243.hp2 HG01346.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01981.hp1 HG02451.hp1 HG02723.hp2 HG02735.hp1 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03471.hp2 HG03831.hp2 HG03927.hp2 NA18943.hp1 NA18944.hp2 NA19000.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19068.hp1 NA19068.hp2 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0016 a0001c0001t0019 a0001c0001t0021 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0035 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0042 a0001c0001t0043 a0001c0001t0047 a0001c0001t0049 a0001c0001t0052 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056	a0001c0001t0001g0013 a0001c0001t0001g0054 a0001c0001t0001g0109 others(33): Show a0001c0001t0001g0013 a0001c0001t0001g0054 a0001c0001t0001g0109 a0001c0001t0002g0069 a0001c0001t0003g0039 a0001c0001t0003g0047 a0001c0001t0004g0016 a0001c0001t0004g0024 a0001c0001t0004g0030 a0001c0001t0005g0041 a0001c0001t0005g0053 a0001c0001t0005g0073 a0001c0001t0005g0077 a0001c0001t0006g0065 a0001c0001t0007g0060 a0001c0001t0009g0038 a0001c0001t0016g0101 a0001c0001t0016g0114 a0001c0001t0019g0025 a0001c0001t0019g0040 a0001c0001t0021g0093 a0001c0001t0024g0088 a0001c0001t0025g0097 a0001c0001t0026g0091 a0001c0001t0035g0026 a0001c0001t0038g0032 a0001c0001t0039g0112 a0001c0001t0040g0102 a0001c0001t0042g0080 a0001c0001t0043g0046 a0001c0001t0047g0070 a0001c0001t0049g0108 a0001c0001t0052g0106 a0001c0001t0054g0096 a0001c0001t0055g0113 a0001c0001t0056g0079	36	116	0.3103	-6	c.-14 others(27): Show c.-146-19411_-146-19406delCACACA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239834148	TCACACA TCACACA	T T	intron_variant intron_variant	MODIFIER	HG02040.hp2 NA18943.hp1 NA19012.hp2 HG02040.hp2 NA18943.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0004g0030 a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0004g0030	3	116	0.0259	-6	c.-20 others(23): Show c.-20+6806_-20+6811delACACAC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239874285	GTATATA GTATATA	G G	intron_variant intron_variant	MODIFIER	HG02040.hp2 NA19012.hp2 HG02040.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0001g0002 a0001c0001t0001g0013	2	116	0.0172	-6	c.-19 others(25): Show c.-19-33111_-19-33106delTATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239899303	GTGTGTA GTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02723.hp1 HG02818.hp2 others(9): Show HG01109.hp2 HG02723.hp1 HG02818.hp2 HG03041.hp2 HG03139.hp2 HG03209.hp2 HG03471.hp2 NA18906.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 others(5): Show a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0021 a0001c0001t0036 a0001c0001t0038	a0001c0001t0006g0003 a0001c0001t0006g0044 a0001c0001t0009g0038 others(9): Show a0001c0001t0006g0003 a0001c0001t0006g0044 a0001c0001t0009g0038 a0001c0001t0009g0045 a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0001t0013g0078 a0001c0001t0015g0063 a0001c0001t0021g0019 a0001c0001t0021g0093 a0001c0001t0036g0094 a0001c0001t0038g0032	12	116	0.1035	-6	c.-19 others(23): Show c.-19-8128_-19-8123delGTGTAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	33977271	ATACTCT ATACTCT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp2 HG01884.hp1 others(6): Show HG01070.hp2 HG01071.hp2 HG01884.hp1 HG02258.hp2 HG02280.hp1 HG02717.hp2 HG02896.hp2 HG02897.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0011 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0011 a0001c0001t0034	a0001c0001t0001g0286 a0001c0001t0006g0281 a0001c0001t0006g0282 others(6): Show a0001c0001t0001g0286 a0001c0001t0006g0281 a0001c0001t0006g0282 a0001c0001t0006g0283 a0001c0001t0011g0284 a0001c0001t0011g0285 a0001c0001t0011g0287 a0001c0001t0011g0288 a0001c0001t0034g0280	9	338	0.0266	-6	c.-40 others(25): Show c.-408+8128_-408+8133delTACTCT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	33983186	GTGTGTA GTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00438.hp1 HG00544.hp1 others(65): Show HG00140.hp2 HG00438.hp1 HG00544.hp1 HG00609.hp1 HG00741.hp1 HG01081.hp1 HG01346.hp1 HG01884.hp2 HG01943.hp2 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp2 HG02074.hp2 HG02083.hp1 HG02129.hp2 HG02132.hp1 HG02145.hp2 HG02559.hp2 HG02572.hp1 HG02647.hp1 HG02698.hp2 HG02723.hp2 HG02809.hp2 HG02818.hp2 HG02895.hp1 HG02897.hp1 HG02965.hp2 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03471.hp1 HG03471.hp2 HG03491.hp1 HG03492.hp2 HG03516.hp1 HG03710.hp1 HG03831.hp1 NA18612.hp2 NA18939.hp1 NA18941.hp2 NA18943.hp1 NA18946.hp1 NA18952.hp1 NA18966.hp1 NA18972.hp2 NA18974.hp2 NA18977.hp2 NA18985.hp2 NA18990.hp1 NA18991.hp2 NA18992.hp1 NA18993.hp1 NA18995.hp2 NA18999.hp2 NA19001.hp1 NA19007.hp1 NA19060.hp1 NA19063.hp2 NA19064.hp2 NA19066.hp1 NA19074.hp2 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0003 a0003c0004 a0001c0001 a0002c0003 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0020 a0001c0001t0022 a0001c0001t0033 a0002c0003t0016 a0003c0004t0003	a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0080 others(65): Show a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0002g0128 a0001c0001t0002g0246 a0001c0001t0003g0294 a0001c0001t0003g0295 a0001c0001t0003g0296 a0001c0001t0003g0306 a0001c0001t0003g0307 a0001c0001t0003g0308 a0001c0001t0003g0311 a0001c0001t0003g0314 a0001c0001t0003g0316 a0001c0001t0003g0318 a0001c0001t0003g0319 a0001c0001t0003g0320 a0001c0001t0009g0045 a0001c0001t0009g0046 a0001c0001t0009g0305 a0001c0001t0009g0317 a0001c0001t0010g0312 a0001c0001t0014g0315 a0001c0001t0020g0164 a0001c0001t0020g0165 a0001c0001t0020g0166 a0001c0001t0022g0313 a0001c0001t0033g0158 a0002c0003t0016g0297 a0003c0004t0003g0324 a0003c0004t0003g0325 a0003c0004t0003g0326	68	338	0.2012	-6	c.-40 others(27): Show c.-408+14042_-408+14047delATGTGT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	33983215	CATATAT CATATAT	C C	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01496.hp2 HG01884.hp1 others(18): Show HG01255.hp2 HG01496.hp2 HG01884.hp1 HG02109.hp2 HG02280.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02647.hp2 HG02896.hp2 HG02897.hp2 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03139.hp2 HG03486.hp2 HG03516.hp2 HG06807.hp1 NA18906.hp1 NA19030.hp1 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0010 a0001c0001 a0002c0010	a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 others(4): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0015 a0001c0001t0023 a0002c0010t0011	a0001c0001t0003g0020 a0001c0001t0003g0322 a0001c0001t0006g0018 others(18): Show a0001c0001t0003g0020 a0001c0001t0003g0322 a0001c0001t0006g0018 a0001c0001t0006g0062 a0001c0001t0006g0063 a0001c0001t0006g0064 a0001c0001t0006g0065 a0001c0001t0006g0281 a0001c0001t0006g0282 a0001c0001t0006g0283 a0001c0001t0009g0019 a0001c0001t0009g0021 a0001c0001t0011g0284 a0001c0001t0011g0285 a0001c0001t0015g0300 a0001c0001t0015g0301 a0001c0001t0015g0303 a0001c0001t0015g0304 a0001c0001t0023g0048 a0001c0001t0023g0049 a0002c0010t0011g0269	21	338	0.0621	-6	c.-40 others(27): Show c.-408+14069_-408+14074delTATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34036848	AATCCAT AATCCAT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01069.hp2 HG01106.hp2 others(15): Show HG00099.hp1 HG01069.hp2 HG01106.hp2 HG01169.hp1 HG01192.hp2 HG01243.hp2 HG01257.hp1 HG01258.hp1 HG01515.hp2 HG01516.hp1 HG02602.hp2 HG02738.hp2 HG02809.hp1 HG02895.hp2 HG03942.hp1 HG04228.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0010 a0001c0001t0017 others(1): Show a0001c0001t0004 a0001c0001t0010 a0001c0001t0017 a0001c0001t0038	a0001c0001t0004g0001 a0001c0001t0004g0056 a0001c0001t0004g0057 others(14): Show a0001c0001t0004g0001 a0001c0001t0004g0056 a0001c0001t0004g0057 a0001c0001t0004g0103 a0001c0001t0004g0177 a0001c0001t0004g0210 a0001c0001t0004g0236 a0001c0001t0004g0237 a0001c0001t0010g0052 a0001c0001t0010g0053 a0001c0001t0010g0054 a0001c0001t0010g0291 a0001c0001t0017g0206 a0001c0001t0017g0238 a0001c0001t0017g0239 a0001c0001t0017g0240 a0001c0001t0038g0241	18	338	0.0533	-6	c.-40 others(25): Show c.-407-9687_-407-9682delATATCC	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34044702	GTCCAGT GTCCAGT	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02886.hp1 HG03209.hp2 others(5): Show HG02451.hp1 HG02886.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03579.hp2 NA20300.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0013 a0001c0001t0026 a0001c0001t0031 others(1): Show a0001c0001t0013 a0001c0001t0026 a0001c0001t0031 a0001c0009t0032	a0001c0001t0013g0032 a0001c0001t0013g0033 a0001c0001t0013g0034 others(5): Show a0001c0001t0013g0032 a0001c0001t0013g0033 a0001c0001t0013g0034 a0001c0001t0013g0038 a0001c0001t0013g0041 a0001c0001t0026g0070 a0001c0001t0031g0327 a0001c0009t0032g0290	8	338	0.0237	-6	c.-40 others(25): Show c.-407-1836_-407-1831delCCAGTT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34058555	AACACAC AACACAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01081.hp2 HG01175.hp2 others(1): Show HG00140.hp1 HG01081.hp2 HG01175.hp2 HG03491.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0008 a0001c0001 a0005c0008	a0001c0001t0002 a0001c0001t0014 a0005c0008t0002 a0001c0001t0002 a0001c0001t0014 a0005c0008t0002	a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0014g0289 others(1): Show a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0014g0289 a0005c0008t0002g0226	4	338	0.0118	-6	c.-75 others(23): Show c.-75-4054_-75-4049delCACACA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA1_chr2_174742592_174769472	174763326	GCGCGCA GCGCGCA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(133): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG00609.hp1 HG00621.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00738.hp1 HG00741.hp2 HG01099.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp2 HG01192.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01993.hp1 HG02015.hp1 HG02015.hp2 HG02040.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp2 HG02083.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02293.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp1 HG02615.hp2 HG02630.hp1 HG02683.hp2 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02896.hp1 HG02897.hp2 HG03017.hp1 HG03239.hp1 HG03491.hp2 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03831.hp1 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04199.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp2 NA18940.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18957.hp2 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18968.hp1 NA18970.hp2 NA18971.hp1 NA18972.hp1 NA18975.hp2 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18980.hp1 NA18982.hp1 NA18987.hp1 NA18992.hp1 NA18997.hp1 NA18998.hp1 NA18999.hp1 NA19003.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19057.hp2 NA19062.hp1 NA19065.hp1 NA19068.hp2 NA19074.hp2 NA19075.hp2 NA19077.hp1 NA19081.hp1 NA19082.hp1 NA19084.hp1 NA19085.hp1 NA19085.hp2 NA19086.hp2 NA19087.hp1 NA19089.hp1 NA19090.hp1 NA19240.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0006 a0007 others(1): Show a0001 a0006 a0007 a0010	a0001c0001 a0001c0002 a0006c0008 others(2): Show a0001c0001 a0001c0002 a0006c0008 a0007c0010 a0010c0012	a0001c0001t0001 a0001c0002t0001 a0006c0008t0001 others(2): Show a0001c0001t0001 a0001c0002t0001 a0006c0008t0001 a0007c0010t0001 a0010c0012t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0009 others(43): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0002t0001g0027 a0006c0008t0001g0107 a0007c0010t0001g0109 a0010c0012t0001g0112	136	370	0.3676	-6	c.43+ others(21): Show c.43+1020_43+1025delTGCGCG	CHRNA1	ENSG00000138435.16	transcript	ENST00000348749.9	protein_coding	1/8			chr2	TogoVar
CHRNA2_chr8_27454756_27484261	27479259	CACACAT CACACAT	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00558.hp2 others(44): Show HG00099.hp1 HG00099.hp2 HG00558.hp2 HG00642.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01071.hp2 HG01074.hp1 HG01255.hp2 HG01257.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp2 HG01496.hp1 HG01884.hp1 HG01928.hp1 HG01975.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02523.hp1 HG03239.hp1 HG03490.hp1 HG03492.hp1 HG03492.hp2 HG03704.hp2 HG03710.hp1 NA18939.hp1 NA18948.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp2 NA19057.hp1 NA19060.hp2 NA19062.hp1 NA19064.hp1 NA19070.hp2 NA20752.hp2 NA20805.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0007 a0001c0012 others(2): Show a0001c0001 a0001c0007 a0001c0012 a0002c0002 a0003c0003	a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 others(9): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0015 a0001c0001t0030 a0001c0007t0006 a0001c0012t0031 a0002c0002t0028 a0002c0002t0032 a0003c0003t0007 a0003c0003t0015 a0003c0003t0029	a0001c0001t0005g0009 a0001c0001t0005g0030 a0001c0001t0005g0070 others(20): Show a0001c0001t0005g0009 a0001c0001t0005g0030 a0001c0001t0005g0070 a0001c0001t0005g0073 a0001c0001t0005g0075 a0001c0001t0005g0078 a0001c0001t0006g0007 a0001c0001t0006g0029 a0001c0001t0006g0064 a0001c0001t0013g0024 a0001c0001t0013g0031 a0001c0001t0015g0068 a0001c0001t0015g0071 a0001c0001t0015g0077 a0001c0001t0030g0074 a0001c0007t0006g0065 a0001c0012t0031g0076 a0002c0002t0028g0063 a0002c0002t0032g0072 a0003c0003t0007g0005 a0003c0003t0007g0067 a0003c0003t0015g0069 a0003c0003t0029g0066	47	458	0.1026	-6	c.-57 others(15): Show c.-578_-573delATGTGT	CHRNA2	ENSG00000120903.13	transcript	ENST00000407991.3	protein_coding	1/7	8202		chr8	TogoVar
CHRNA5_chr15_78560520_78600269	78563129	AAAAAAG AAAAAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00597.hp1 HG00733.hp2 others(15): Show HG00408.hp1 HG00597.hp1 HG00733.hp2 HG01081.hp1 HG01123.hp1 HG01358.hp2 HG02074.hp1 NA18952.hp1 NA18960.hp1 NA18975.hp2 NA18977.hp1 NA18983.hp2 NA18989.hp2 NA19005.hp1 NA19057.hp1 NA19081.hp2 NA19084.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0012 others(3): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0012 a0001c0001t0017 a0001c0001t0027 a0001c0001t0028	a0001c0001t0002g0069 a0001c0001t0007g0009 a0001c0001t0007g0021 others(13): Show a0001c0001t0002g0069 a0001c0001t0007g0009 a0001c0001t0007g0021 a0001c0001t0007g0022 a0001c0001t0007g0064 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0007g0067 a0001c0001t0007g0068 a0001c0001t0012g0136 a0001c0001t0012g0137 a0001c0001t0012g0219 a0001c0001t0017g0220 a0001c0001t0017g0221 a0001c0001t0027g0021 a0001c0001t0028g0022	18	382	0.0471	-6	c.-25 others(17): Show c.-2590_-2585delAAAAAG	CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding		2390		chr15	TogoVar
CHRNA5_chr15_78560520_78600269	78573963	ATTTTTT ATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00597.hp1 HG01243.hp1 others(28): Show HG00408.hp1 HG00597.hp1 HG01243.hp1 HG01346.hp1 HG01358.hp2 HG02055.hp1 HG02083.hp2 HG02258.hp1 HG02622.hp1 HG02723.hp1 HG02886.hp1 HG02965.hp1 HG03041.hp2 HG03453.hp2 HG03471.hp1 HG03516.hp1 NA18522.hp2 NA18949.hp2 NA18952.hp1 NA18957.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp2 NA19005.hp1 NA19030.hp1 NA19043.hp1 NA19081.hp2 NA19084.hp2 NA19085.hp1 NA19240.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 others(3): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0015 a0001c0001t0027 a0001c0001t0028	a0001c0001t0005g0001 a0001c0001t0005g0034 a0001c0001t0005g0211 others(18): Show a0001c0001t0005g0001 a0001c0001t0005g0034 a0001c0001t0005g0211 a0001c0001t0005g0212 a0001c0001t0005g0213 a0001c0001t0005g0214 a0001c0001t0005g0215 a0001c0001t0005g0216 a0001c0001t0005g0217 a0001c0001t0006g0146 a0001c0001t0007g0009 a0001c0001t0007g0021 a0001c0001t0007g0022 a0001c0001t0007g0064 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0007g0068 a0001c0001t0015g0275 a0001c0001t0015g0276 a0001c0001t0027g0021 a0001c0001t0028g0022	31	382	0.0812	-6	c.107 others(23): Show c.107-6830_107-6825delTTTTTT	CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32070669	CTTTTTT CTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02886.hp2 HG02922.hp1 others(7): Show HG00544.hp1 HG02886.hp2 HG02922.hp1 HG02965.hp2 HG03195.hp2 HG03579.hp2 NA18942.hp2 NA19012.hp1 NA19030.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005	a0001c0001t0003 a0001c0001t0013 a0001c0001t0014 others(6): Show a0001c0001t0003 a0001c0001t0013 a0001c0001t0014 a0001c0002t0005 a0001c0002t0006 a0001c0002t0031 a0001c0004t0024 a0001c0005t0004 a0001c0005t0032	a0001c0001t0003g0131 a0001c0001t0013g0204 a0001c0001t0013g0205 others(7): Show a0001c0001t0003g0131 a0001c0001t0013g0204 a0001c0001t0013g0205 a0001c0001t0014g0105 a0001c0002t0005g0220 a0001c0002t0006g0158 a0001c0002t0031g0041 a0001c0004t0024g0189 a0001c0005t0004g0207 a0001c0005t0032g0176	10	307	0.0326	-6	c.196 others(25): Show c.196-30604_196-30599delTTTTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32114019	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03195.hp2 NA20129.hp1 HG02486.hp2 HG03195.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0013 a0001c0001 a0001c0004 a0002c0013	a0001c0001t0001 a0001c0004t0024 a0002c0013t0002 a0001c0001t0001 a0001c0004t0024 a0002c0013t0002	a0001c0001t0001g0082 a0001c0004t0024g0189 a0002c0013t0002g0045 a0001c0001t0001g0082 a0001c0004t0024g0189 a0002c0013t0002g0045	3	307	0.0098	-6	c.350 others(23): Show c.350+2139_350+2144delATATAT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32157201	GACACAC GACACAC	G G	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01070.hp2 HG01071.hp1 others(19): Show HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01169.hp1 HG01496.hp1 HG02258.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02735.hp2 HG03041.hp1 HG03209.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0010 others(1): Show a0001c0001 a0001c0004 a0001c0010 a0001c0011	a0001c0001t0008 a0001c0001t0009 a0001c0001t0027 others(9): Show a0001c0001t0008 a0001c0001t0009 a0001c0001t0027 a0001c0001t0029 a0001c0001t0040 a0001c0001t0042 a0001c0004t0008 a0001c0004t0009 a0001c0004t0039 a0001c0010t0009 a0001c0011t0026 a0001c0011t0048	a0001c0001t0008g0118 a0001c0001t0008g0195 a0001c0001t0008g0224 others(19): Show a0001c0001t0008g0118 a0001c0001t0008g0195 a0001c0001t0008g0224 a0001c0001t0009g0203 a0001c0001t0027g0044 a0001c0001t0027g0252 a0001c0001t0029g0206 a0001c0001t0029g0213 a0001c0001t0040g0084 a0001c0001t0042g0280 a0001c0004t0008g0194 a0001c0004t0009g0078 a0001c0004t0009g0109 a0001c0004t0009g0110 a0001c0004t0009g0197 a0001c0004t0039g0180 a0001c0010t0009g0113 a0001c0010t0009g0114 a0001c0010t0009g0190 a0001c0011t0026g0209 a0001c0011t0026g0211 a0001c0011t0048g0119	22	307	0.0717	-6	c.431 others(21): Show c.431-384_431-379delACACAC	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA9_chr4_40330333_40360217	40346030	AAACAAC AAACAAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00280.hp1 others(87): Show HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00423.hp1 HG00609.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp2 HG00733.hp1 HG00735.hp1 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01981.hp1 HG01993.hp1 HG02055.hp1 HG02145.hp2 HG02257.hp1 HG02280.hp1 HG02486.hp2 HG02523.hp2 HG02559.hp2 HG02622.hp1 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02735.hp2 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG03017.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03540.hp2 HG03654.hp1 HG03704.hp1 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18981.hp2 NA18988.hp2 NA18999.hp2 NA19005.hp1 NA19030.hp1 NA19043.hp1 NA19084.hp2 NA19240.hp2 NA20300.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0008	a0001c0001 a0001c0002 a0001c0004 others(8): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0001c0017 a0003c0006 a0003c0011 a0004c0008 a0004c0016 a0004c0019 a0008c0015	a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 others(10): Show a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 a0001c0004t0001 a0001c0004t0002 a0001c0005t0003 a0001c0017t0003 a0003c0006t0001 a0003c0011t0001 a0004c0008t0001 a0004c0016t0001 a0004c0019t0001 a0008c0015t0001	a0001c0001t0003g0155 a0001c0001t0003g0170 a0001c0001t0003g0173 others(57): Show a0001c0001t0003g0155 a0001c0001t0003g0170 a0001c0001t0003g0173 a0001c0002t0001g0022 a0001c0002t0001g0023 a0001c0002t0001g0041 a0001c0002t0001g0042 a0001c0002t0001g0092 a0001c0002t0001g0093 a0001c0002t0002g0171 a0001c0004t0001g0181 a0001c0004t0002g0009 a0001c0004t0002g0021 a0001c0004t0002g0078 a0001c0004t0002g0079 a0001c0004t0002g0080 a0001c0004t0002g0081 a0001c0004t0002g0082 a0001c0004t0002g0083 a0001c0004t0002g0084 a0001c0004t0002g0085 a0001c0004t0002g0086 a0001c0004t0002g0087 a0001c0004t0002g0088 a0001c0004t0002g0089 a0001c0004t0002g0175 a0001c0004t0002g0200 a0001c0005t0003g0011 a0001c0005t0003g0015 a0001c0005t0003g0020 a0001c0005t0003g0037 a0001c0005t0003g0038 a0001c0005t0003g0039 a0001c0005t0003g0066 a0001c0005t0003g0067 a0001c0005t0003g0068 a0001c0005t0003g0069 a0001c0005t0003g0070 a0001c0005t0003g0071 a0001c0005t0003g0072 a0001c0005t0003g0074 a0001c0005t0003g0075 a0001c0017t0003g0169 a0003c0006t0001g0055 a0003c0006t0001g0178 a0003c0011t0001g0054 a0003c0011t0001g0094 a0004c0008t0001g0056 a0004c0008t0001g0058 a0004c0008t0001g0188 a0004c0008t0001g0190 a0004c0008t0001g0191 a0004c0008t0001g0194 a0004c0008t0001g0195 a0004c0016t0001g0192 a0004c0016t0001g0193 a0004c0016t0001g0197 a0004c0019t0001g0189 a0008c0015t0001g0057 a0008c0015t0001g0196	90	420	0.2143	-6	c.366 others(23): Show c.366-2834_366-2829delCAACAA	CHRNA9	ENSG00000174343.6	transcript	ENST00000310169.3	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr4	TogoVar
CHRNB1_chr17_7440061_7462710	7446321	GTGTGTC GTGTGTC	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00438.hp2 others(62): Show HG00280.hp1 HG00280.hp2 HG00438.hp2 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00735.hp2 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp2 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp2 HG01433.hp1 HG01517.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01981.hp1 HG02004.hp1 HG02083.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02273.hp2 HG02698.hp2 HG02809.hp2 HG03831.hp2 HG03834.hp2 HG03927.hp2 HG04184.hp2 NA18612.hp1 NA18747.hp1 NA18747.hp2 NA18944.hp1 NA18954.hp2 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18979.hp2 NA18985.hp2 NA18989.hp1 NA18994.hp2 NA18995.hp1 NA19003.hp2 NA19004.hp1 NA19054.hp2 NA19064.hp1 NA19070.hp2 NA19080.hp1 NA20300.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0007 a0002c0002 others(1): Show a0001c0001 a0001c0007 a0002c0002 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0007t0002 a0002c0002t0001 a0002c0002t0011 a0004c0004t0001	a0001c0001t0001g0207 a0001c0001t0002g0003 a0001c0001t0002g0020 others(39): Show a0001c0001t0001g0207 a0001c0001t0002g0003 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0107 a0001c0001t0003g0002 a0001c0001t0003g0007 a0001c0001t0003g0018 a0001c0001t0003g0019 a0001c0001t0003g0093 a0001c0001t0003g0094 a0001c0001t0003g0095 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0101 a0001c0001t0003g0102 a0001c0007t0002g0106 a0002c0002t0001g0012 a0002c0002t0001g0026 a0002c0002t0001g0027 a0002c0002t0001g0218 a0002c0002t0001g0219 a0002c0002t0001g0220 a0002c0002t0001g0221 a0002c0002t0001g0222 a0002c0002t0001g0223 a0002c0002t0001g0224 a0002c0002t0001g0226 a0002c0002t0001g0227 a0002c0002t0001g0228 a0002c0002t0001g0229 a0002c0002t0001g0230 a0002c0002t0001g0231 a0002c0002t0011g0225 a0004c0004t0001g0287	65	368	0.1766	-6	c.243 others(21): Show c.243+214_243+219delCTGTGT	CHRNB1	ENSG00000170175.11	transcript	ENST00000306071.7	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
CHRNB3_chr8_42692366_42742407	42724090	AAAAAAG AAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02055.hp1 HG02258.hp1 others(11): Show HG01074.hp2 HG02055.hp1 HG02258.hp1 HG02451.hp2 HG02622.hp2 HG02698.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG03831.hp2 NA19030.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0004 a0002c0002 a0001c0003 a0001c0004 a0002c0002	a0001c0003t0001 a0001c0004t0007 a0002c0002t0004 a0001c0003t0001 a0001c0004t0007 a0002c0002t0004	a0001c0003t0001g0141 a0001c0003t0001g0142 a0001c0003t0001g0143 others(11): Show a0001c0003t0001g0141 a0001c0003t0001g0142 a0001c0003t0001g0143 a0001c0004t0007g0025 a0001c0004t0007g0026 a0002c0002t0004g0119 a0002c0002t0004g0120 a0002c0002t0004g0121 a0002c0002t0004g0122 a0002c0002t0004g0123 a0002c0002t0004g0124 a0002c0002t0004g0125 a0002c0002t0004g0126 a0002c0002t0004g0138	14	282	0.0497	-6	c.250 others(23): Show c.250-6493_250-6488delAGAAAA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB4_chr15_78619111_78646210	78626339	GGGGTGT GGGGTGT	G G	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02895.hp1 HG02965.hp1 others(1): Show HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03139.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0012 a0003c0004t0004g0012	4	416	0.0096	-6	c.133 others(25): Show c.1339-1054_1339-1049delACACCC	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding	5/5			chr15	TogoVar
CHRNB4_chr15_78619111_78646210	78626341	GGTGTGT GGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00597.hp1 others(29): Show HG00408.hp1 HG00408.hp2 HG00597.hp1 HG00597.hp2 HG01070.hp1 HG01071.hp1 HG02165.hp2 HG02735.hp2 HG02818.hp1 HG02897.hp1 HG06807.hp2 NA18612.hp2 NA18747.hp1 NA18942.hp2 NA18943.hp1 NA18952.hp2 NA18955.hp2 NA18965.hp1 NA18982.hp1 NA18983.hp2 NA19000.hp1 NA19005.hp2 NA19007.hp2 NA19009.hp2 NA19011.hp2 NA19074.hp2 NA19077.hp1 NA19081.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA21309.hp2	a0001 a0009 a0010 a0001 a0009 a0010	a0001c0001 a0009c0017 a0010c0012 a0001c0001 a0009c0017 a0010c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0009c0017t0002 a0010c0012t0001	a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0045 others(15): Show a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0108 a0001c0001t0001g0132 a0001c0001t0001g0138 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0184 a0001c0001t0001g0192 a0001c0001t0001g0217 a0001c0001t0002g0070 a0001c0001t0002g0078 a0001c0001t0003g0021 a0001c0001t0003g0128 a0009c0017t0002g0092 a0010c0012t0001g0135	32	416	0.0769	-6	c.133 others(25): Show c.1339-1056_1339-1051delACACAC	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding	5/5			chr15	TogoVar
CHRND_chr2_232521160_232541664	232531946	CAAAAAA CAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG02451.hp1 NA18747.hp1 others(4): Show HG01515.hp2 HG02451.hp1 NA18747.hp1 NA18988.hp1 NA19054.hp1 NA19055.hp1 NA19063.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0005 a0001c0002t0002 a0001c0002t0005	a0001c0002t0002g0023 a0001c0002t0002g0115 a0001c0002t0002g0123 others(2): Show a0001c0002t0002g0023 a0001c0002t0002g0115 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0005g0023	7	438	0.0160	-6	c.104 others(23): Show c.1047+313_1047+318delAAAAAA	CHRND	ENSG00000135902.10	transcript	ENST00000258385.8	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr2	TogoVar
CHRNE_chr17_4892771_4908098	4899175	CGGGCCA CGGGCCA	C C	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00621.hp1 HG00673.hp2 others(31): Show HG00609.hp2 HG00621.hp1 HG00673.hp2 HG01069.hp1 HG01074.hp2 HG01192.hp1 HG01243.hp1 HG01515.hp1 HG01517.hp2 HG02148.hp1 HG02572.hp1 HG03453.hp2 NA18944.hp1 NA18952.hp1 NA18952.hp2 NA18953.hp2 NA18954.hp2 NA18972.hp1 NA18973.hp1 NA18975.hp2 NA18979.hp1 NA18980.hp2 NA19002.hp2 NA19005.hp2 NA19030.hp1 NA19054.hp2 NA19057.hp1 NA19085.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp2 NA20300.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0003c0010 a0001c0001 a0001c0003 a0003c0010	a0001c0001t0052 a0001c0001t0062 a0001c0003t0004 others(5): Show a0001c0001t0052 a0001c0001t0062 a0001c0003t0004 a0001c0003t0020 a0001c0003t0038 a0001c0003t0063 a0001c0003t0064 a0003c0010t0020	a0001c0001t0052g0076 a0001c0001t0062g0110 a0001c0003t0004g0005 others(11): Show a0001c0001t0052g0076 a0001c0001t0062g0110 a0001c0003t0004g0005 a0001c0003t0004g0044 a0001c0003t0004g0056 a0001c0003t0004g0105 a0001c0003t0004g0106 a0001c0003t0004g0108 a0001c0003t0020g0045 a0001c0003t0020g0107 a0001c0003t0038g0043 a0001c0003t0063g0111 a0001c0003t0064g0109 a0003c0010t0020g0046	34	446	0.0762	-6	c.121 others(21): Show c.1219+17_1219+22delTGGCCC	CHRNE	ENSG00000108556.10	transcript	ENST00000649488.2	protein_coding	10/11			chr17	TogoVar
CHST11_chr12_104451948_104767014	104488740	CGTGTGT CGTGTGT	C C	intron_variant intron_variant	MODIFIER	NA18948.hp2 NA18987.hp2 NA19060.hp2 NA18948.hp2 NA18987.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0007 a0001c0001t0001g0033 a0001c0001t0004g0029 a0001c0001t0001g0007 a0001c0001t0001g0033 a0001c0001t0004g0029	3	240	0.0125	-6	c.118 others(25): Show c.118+31238_118+31243delGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104541114	CCTCTCT CCTCTCT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00423.hp1 HG00438.hp2 others(34): Show HG00323.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG01109.hp1 HG01256.hp1 HG02040.hp1 HG02040.hp2 HG02135.hp1 HG02300.hp2 HG02602.hp1 HG03239.hp2 HG03654.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp2 HG04228.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18961.hp2 NA18964.hp2 NA18979.hp2 NA18986.hp1 NA18987.hp1 NA18987.hp2 NA18993.hp1 NA18993.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19060.hp2 NA19081.hp2 NA19088.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0019 a0001c0001t0021 a0001c0001t0026 a0001c0001t0030 a0001c0001t0031 a0001c0001t0034 a0001c0001t0035	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0037 others(34): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0037 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0074 a0001c0001t0001g0099 a0001c0001t0001g0107 a0001c0001t0001g0113 a0001c0001t0002g0025 a0001c0001t0003g0021 a0001c0001t0003g0030 a0001c0001t0003g0040 a0001c0001t0003g0050 a0001c0001t0003g0144 a0001c0001t0003g0216 a0001c0001t0003g0228 a0001c0001t0003g0230 a0001c0001t0004g0029 a0001c0001t0004g0106 a0001c0001t0004g0109 a0001c0001t0007g0072 a0001c0001t0010g0012 a0001c0001t0010g0014 a0001c0001t0010g0038 a0001c0001t0011g0067 a0001c0001t0011g0105 a0001c0001t0014g0198 a0001c0001t0019g0006 a0001c0001t0021g0183 a0001c0001t0021g0197 a0001c0001t0026g0047 a0001c0001t0030g0032 a0001c0001t0031g0013 a0001c0001t0034g0170 a0001c0001t0035g0171	37	240	0.1542	-6	c.119 others(25): Show c.119-60780_119-60775delTCTCTC	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar

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