Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN1_chr12_40687439_41077415	41007045	GTTTTTT GTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01167.hp1 HG01169.hp1 others(22): Show HG01109.hp2 HG01167.hp1 HG01169.hp1 HG01515.hp2 HG01517.hp1 HG02109.hp2 HG02280.hp2 HG02572.hp1 HG02615.hp2 HG02717.hp2 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 HG03540.hp2 NA18953.hp1 NA18972.hp2 NA19043.hp1 NA19091.hp1 NA19240.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0007 a0001c0001 a0001c0003 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0003t0003 a0002c0007t0008	a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 others(22): Show a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0002g0067 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0007g0055 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0002c0007t0008g0009 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	25	230	0.1087	-6	c.211 others(25): Show c.2114-7156_2114-7151delTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41037663	TACACAC TACACAC	T T	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00673.hp1 HG00735.hp1 others(29): Show HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp2 HG01109.hp1 HG01109.hp2 HG01884.hp1 HG02004.hp1 HG02055.hp2 HG02148.hp1 HG02257.hp1 HG02273.hp2 HG02615.hp2 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03654.hp1 NA18747.hp2 NA18952.hp1 NA18961.hp2 NA18972.hp1 NA18973.hp1 NA18977.hp1 NA18980.hp1 NA18989.hp2 NA19011.hp2 NA19066.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0001c0012 others(1): Show a0001c0001 a0001c0009 a0001c0012 a0002c0007	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0009t0004 a0001c0012t0021 a0002c0007t0008	a0001c0001t0001g0007 a0001c0001t0001g0037 a0001c0001t0001g0076 others(29): Show a0001c0001t0001g0007 a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0107 a0001c0001t0001g0160 a0001c0001t0001g0218 a0001c0001t0001g0228 a0001c0001t0004g0029 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0184 a0001c0001t0004g0216 a0001c0001t0004g0225 a0001c0001t0006g0106 a0001c0001t0007g0002 a0001c0009t0004g0046 a0001c0012t0021g0204 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	32	230	0.1391	-6	c.298 others(25): Show c.2980+8478_2980+8483delCACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41051893	AACACAC AACACAC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(30): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG00733.hp2 HG01099.hp1 HG01106.hp2 HG01346.hp2 HG01361.hp1 HG02055.hp1 HG02083.hp2 HG02109.hp2 HG02257.hp2 HG02280.hp1 HG02300.hp1 HG02572.hp2 HG02717.hp1 HG03130.hp1 HG03540.hp2 HG03579.hp1 HG03834.hp1 HG03834.hp2 NA18952.hp2 NA18953.hp1 NA18957.hp1 NA18964.hp2 NA18972.hp2 NA18977.hp2 NA18984.hp2 NA18988.hp1 NA19065.hp2 NA19091.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0003c0008	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(12): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0017 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0019 a0003c0008t0002	a0001c0001t0002g0131 a0001c0001t0003g0084 a0001c0001t0003g0120 others(30): Show a0001c0001t0002g0131 a0001c0001t0003g0084 a0001c0001t0003g0120 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0005g0135 a0001c0001t0006g0138 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0017g0187 a0001c0002t0003g0060 a0001c0002t0004g0117 a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0019g0056 a0003c0008t0002g0143	33	230	0.1435	-6	c.298 others(27): Show c.2981-18024_2981-18019delCACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA18970.hp1 NA19011.hp1 others(1): Show HG02083.hp2 NA18970.hp1 NA19011.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0006 a0001c0002t0001 a0001c0001t0002 a0001c0001t0006 a0001c0002t0001	a0001c0001t0002g0141 a0001c0001t0006g0138 a0001c0002t0001g0103 others(1): Show a0001c0001t0002g0141 a0001c0001t0006g0138 a0001c0002t0001g0103 a0001c0002t0001g0129	4	230	0.0174	-6	c.298 others(27): Show c.2981-16496_2981-16491delATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41057793	TTATACA TTATACA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02109.hp1 HG02572.hp1 others(4): Show HG01167.hp1 HG02109.hp1 HG02572.hp1 HG02717.hp2 HG02886.hp2 HG03209.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0014 a0001c0001t0001 a0001c0001t0014	a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0001g0212 others(4): Show a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0014g0074 a0001c0001t0014g0185	7	230	0.0304	-6	c.298 others(27): Show c.2981-12163_2981-12158delTACATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN2_chr1_205038212_205083289	205048910	CGTGTGT CGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00558.hp2 HG00621.hp1 others(64): Show HG00280.hp1 HG00558.hp2 HG00621.hp1 HG00738.hp1 HG00738.hp2 HG01106.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp1 HG01358.hp1 HG01496.hp1 HG01891.hp2 HG01943.hp1 HG01975.hp1 HG01978.hp2 HG01981.hp1 HG02004.hp1 HG02083.hp1 HG02109.hp2 HG02132.hp1 HG02155.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02717.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02965.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp2 HG03491.hp2 HG03669.hp1 HG03834.hp1 HG03927.hp2 NA18747.hp2 NA18942.hp1 NA18944.hp1 NA18950.hp1 NA18952.hp2 NA18959.hp1 NA18961.hp2 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18969.hp1 NA18972.hp2 NA18974.hp2 NA18975.hp2 NA18979.hp1 NA18980.hp2 NA18981.hp2 NA18982.hp1 NA18993.hp1 NA19003.hp1 NA19009.hp1 NA19009.hp2 NA19054.hp2 NA19059.hp2 NA19063.hp2 NA19066.hp1 NA19068.hp2 NA19076.hp1 NA19080.hp2 NA19082.hp2 NA19085.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0006 a0014	a0001c0001 a0001c0004 a0001c0008 others(7): Show a0001c0001 a0001c0004 a0001c0008 a0002c0002 a0002c0006 a0003c0003 a0004c0005 a0004c0019 a0006c0011 a0014c0017	a0001c0001t0003 a0001c0001t0012 a0001c0001t0034 others(15): Show a0001c0001t0003 a0001c0001t0012 a0001c0001t0034 a0001c0004t0001 a0001c0004t0008 a0001c0008t0005 a0002c0002t0002 a0002c0002t0017 a0002c0002t0029 a0002c0002t0031 a0002c0002t0037 a0002c0002t0038 a0002c0006t0001 a0003c0003t0001 a0004c0005t0044 a0004c0019t0005 a0006c0011t0015 a0014c0017t0005	a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0012g0205 others(57): Show a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0012g0205 a0001c0001t0034g0318 a0001c0004t0001g0084 a0001c0004t0001g0220 a0001c0004t0001g0231 a0001c0004t0001g0304 a0001c0004t0008g0098 a0001c0004t0008g0107 a0001c0008t0005g0005 a0001c0008t0005g0068 a0001c0008t0005g0282 a0001c0008t0005g0283 a0002c0002t0002g0010 a0002c0002t0002g0014 a0002c0002t0002g0015 a0002c0002t0002g0016 a0002c0002t0002g0042 a0002c0002t0002g0056 a0002c0002t0002g0057 a0002c0002t0002g0058 a0002c0002t0002g0059 a0002c0002t0002g0060 a0002c0002t0002g0061 a0002c0002t0002g0073 a0002c0002t0002g0075 a0002c0002t0002g0085 a0002c0002t0002g0089 a0002c0002t0002g0090 a0002c0002t0002g0091 a0002c0002t0002g0093 a0002c0002t0002g0095 a0002c0002t0002g0096 a0002c0002t0002g0103 a0002c0002t0002g0105 a0002c0002t0002g0106 a0002c0002t0002g0110 a0002c0002t0002g0111 a0002c0002t0002g0112 a0002c0002t0002g0272 a0002c0002t0002g0310 a0002c0002t0017g0099 a0002c0002t0017g0100 a0002c0002t0017g0101 a0002c0002t0029g0172 a0002c0002t0031g0102 a0002c0002t0037g0203 a0002c0002t0038g0135 a0002c0006t0001g0074 a0002c0006t0001g0092 a0002c0006t0001g0094 a0002c0006t0001g0097 a0002c0006t0001g0104 a0003c0003t0001g0072 a0004c0005t0044g0247 a0004c0019t0005g0248 a0006c0011t0015g0170 a0006c0011t0015g0171 a0014c0017t0005g0269	67	380	0.1763	-6	c.-86 others(23): Show c.-86-4145_-86-4140delGTGTGT	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205049281	GACACAC GACACAC	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01069.hp2 HG01071.hp1 others(13): Show HG00099.hp1 HG01069.hp2 HG01071.hp1 HG01346.hp1 HG01515.hp1 HG01884.hp1 HG02257.hp1 HG02451.hp2 HG02809.hp1 HG02809.hp2 HG02922.hp1 HG03471.hp1 HG03516.hp2 HG03540.hp1 HG03688.hp1 NA20805.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0033 a0005c0007t0009	a0001c0001t0002g0316 a0001c0001t0003g0280 a0001c0001t0003g0295 others(12): Show a0001c0001t0002g0316 a0001c0001t0003g0280 a0001c0001t0003g0295 a0001c0001t0003g0302 a0001c0001t0004g0011 a0001c0001t0004g0117 a0001c0001t0004g0266 a0001c0001t0007g0146 a0001c0001t0010g0284 a0001c0001t0033g0043 a0005c0007t0009g0071 a0005c0007t0009g0156 a0005c0007t0009g0157 a0005c0007t0009g0158 a0005c0007t0009g0265	16	380	0.0421	-6	c.-86 others(23): Show c.-86-3779_-86-3774delCACACA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205050278	AGTGTGT AGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp2 HG00544.hp1 others(60): Show HG00323.hp1 HG00323.hp2 HG00544.hp1 HG00639.hp2 HG00733.hp1 HG01069.hp1 HG01070.hp1 HG01099.hp2 HG01109.hp1 HG01123.hp1 HG01168.hp1 HG01169.hp2 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01346.hp1 HG01358.hp2 HG01433.hp1 HG01496.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01978.hp1 HG01981.hp1 HG02055.hp1 HG02055.hp2 HG02109.hp2 HG02145.hp2 HG02257.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02647.hp2 HG02738.hp2 HG02818.hp1 HG02895.hp2 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03225.hp1 HG03471.hp2 HG03491.hp1 HG03492.hp1 HG03654.hp1 HG03688.hp2 HG03831.hp1 NA18612.hp2 NA18951.hp2 NA18966.hp2 NA18967.hp1 NA18983.hp1 NA18990.hp1 NA19011.hp1 NA19043.hp1 NA19240.hp2 NA20300.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0007 others(1): Show a0001 a0003 a0007 a0011	a0001c0001 a0001c0004 a0001c0012 others(3): Show a0001c0001 a0001c0004 a0001c0012 a0003c0013 a0007c0014 a0011c0021	a0001c0001t0003 a0001c0001t0011 a0001c0001t0012 others(10): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0012 a0001c0001t0018 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0025 a0001c0004t0001 a0001c0012t0003 a0003c0013t0014 a0007c0014t0005 a0011c0021t0026	a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0033 others(49): Show a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0049 a0001c0001t0003g0277 a0001c0001t0003g0280 a0001c0001t0003g0286 a0001c0001t0003g0287 a0001c0001t0003g0289 a0001c0001t0003g0290 a0001c0001t0003g0291 a0001c0001t0003g0294 a0001c0001t0003g0295 a0001c0001t0003g0297 a0001c0001t0003g0298 a0001c0001t0003g0300 a0001c0001t0003g0301 a0001c0001t0003g0303 a0001c0001t0003g0306 a0001c0001t0003g0309 a0001c0001t0003g0317 a0001c0001t0011g0013 a0001c0001t0011g0070 a0001c0001t0011g0080 a0001c0001t0011g0081 a0001c0001t0012g0022 a0001c0001t0012g0047 a0001c0001t0012g0205 a0001c0001t0012g0312 a0001c0001t0018g0292 a0001c0001t0021g0311 a0001c0001t0022g0133 a0001c0001t0023g0288 a0001c0001t0025g0082 a0001c0004t0001g0035 a0001c0004t0001g0083 a0001c0004t0001g0084 a0001c0004t0001g0220 a0001c0004t0001g0281 a0001c0004t0001g0293 a0001c0004t0001g0296 a0001c0004t0001g0299 a0001c0012t0003g0045 a0001c0012t0003g0206 a0001c0012t0003g0307 a0003c0013t0014g0037 a0003c0013t0014g0136 a0007c0014t0005g0159 a0007c0014t0005g0308 a0011c0021t0026g0278	63	380	0.1658	-6	c.-86 others(23): Show c.-86-2788_-86-2783delTGTGTG	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205080525	TACACAC TACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG01884.hp1 HG02145.hp2 others(19): Show HG01109.hp1 HG01884.hp1 HG02145.hp2 HG02155.hp2 HG02257.hp2 HG02451.hp2 HG02647.hp2 HG02809.hp1 HG03041.hp2 HG03471.hp1 HG03486.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18981.hp2 NA18982.hp1 NA19003.hp1 NA19009.hp1 NA19054.hp2 NA19088.hp1 NA19240.hp2 NA20752.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0007 a0001c0001 a0002c0002 a0005c0007	a0001c0001t0003 a0001c0001t0004 a0001c0001t0011 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0011 a0001c0001t0033 a0002c0002t0002 a0005c0007t0009	a0001c0001t0003g0303 a0001c0001t0004g0262 a0001c0001t0011g0013 others(17): Show a0001c0001t0003g0303 a0001c0001t0004g0262 a0001c0001t0011g0013 a0001c0001t0011g0070 a0001c0001t0011g0080 a0001c0001t0011g0081 a0001c0001t0033g0043 a0002c0002t0002g0010 a0002c0002t0002g0016 a0002c0002t0002g0042 a0002c0002t0002g0058 a0002c0002t0002g0060 a0002c0002t0002g0061 a0002c0002t0002g0090 a0002c0002t0002g0096 a0002c0002t0002g0108 a0002c0002t0002g0177 a0005c0007t0009g0156 a0005c0007t0009g0157 a0005c0007t0009g0158	22	380	0.0579	-6	c.67 others(17): Show c.6761_*6766delACACAC	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding		2237		chr1	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATAT GATATAT	G G	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02280.hp1 HG02486.hp2 others(2): Show HG01167.hp2 HG02280.hp1 HG02486.hp2 HG04199.hp1 NA18977.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0014 others(2): Show a0001c0001 a0001c0002 a0001c0014 a0001c0019 a0002c0005	a0001c0001t0003 a0001c0002t0001 a0001c0014t0013 others(2): Show a0001c0001t0003 a0001c0002t0001 a0001c0014t0013 a0001c0019t0016 a0002c0005t0003	a0001c0001t0003g0023 a0001c0002t0001g0107 a0001c0014t0013g0057 others(2): Show a0001c0001t0003g0023 a0001c0002t0001g0107 a0001c0014t0013g0057 a0001c0019t0016g0135 a0002c0005t0003g0059	5	174	0.0287	-6	c.251 others(23): Show c.2518-305_2518-300delATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74298888	GGAAAAA GGAAAAA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00438.hp1 HG00438.hp2 others(72): Show HG00408.hp1 HG00438.hp1 HG00438.hp2 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG01071.hp1 HG01081.hp2 HG01167.hp1 HG01169.hp2 HG01255.hp1 HG01346.hp1 HG01943.hp2 HG01978.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02080.hp2 HG02083.hp1 HG02129.hp2 HG02132.hp2 HG02155.hp1 HG02155.hp2 HG02258.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02486.hp1 HG02622.hp2 HG02647.hp1 HG02647.hp2 HG02895.hp2 HG02896.hp1 HG03017.hp2 HG03098.hp2 HG03209.hp1 HG03471.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp1 HG03710.hp1 HG03710.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 NA18945.hp1 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp2 NA18959.hp2 NA18961.hp2 NA18981.hp1 NA18998.hp1 NA18998.hp2 NA19000.hp1 NA19000.hp2 NA19065.hp1 NA19065.hp2 NA19068.hp1 NA19074.hp2 NA19077.hp2 NA19085.hp1 NA19085.hp2 NA19091.hp1 NA19091.hp2 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0006 a0011 a0012	a0001c0001 a0001c0002 a0001c0006 others(12): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0009 a0001c0010 a0001c0018 a0002c0004 a0002c0005 a0002c0015 a0003c0007 a0003c0021 a0006c0024 a0011c0020 a0012c0012	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(36): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0017 a0001c0001t0018 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0020 a0001c0006t0006 a0001c0008t0002 a0001c0008t0015 a0001c0009t0002 a0001c0009t0004 a0001c0010t0003 a0001c0010t0005 a0001c0018t0001 a0002c0004t0001 a0002c0004t0004 a0002c0004t0006 a0002c0004t0028 a0002c0005t0001 a0002c0005t0002 a0002c0005t0003 a0002c0005t0004 a0002c0005t0005 a0002c0005t0006 a0002c0005t0023 a0002c0015t0013 a0003c0007t0002 a0003c0007t0004 a0003c0007t0007 a0003c0021t0003 a0006c0024t0002 a0011c0020t0003 a0012c0012t0003	a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0112 others(72): Show a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0118 a0001c0001t0001g0133 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0003g0024 a0001c0001t0003g0039 a0001c0001t0003g0060 a0001c0001t0004g0092 a0001c0001t0004g0098 a0001c0001t0005g0154 a0001c0001t0005g0156 a0001c0001t0005g0169 a0001c0001t0006g0149 a0001c0001t0017g0171 a0001c0001t0018g0173 a0001c0002t0001g0091 a0001c0002t0001g0097 a0001c0002t0001g0113 a0001c0002t0001g0114 a0001c0002t0001g0116 a0001c0002t0001g0128 a0001c0002t0001g0129 a0001c0002t0003g0047 a0001c0002t0003g0063 a0001c0002t0004g0105 a0001c0002t0004g0119 a0001c0002t0005g0146 a0001c0002t0005g0147 a0001c0002t0005g0152 a0001c0002t0020g0007 a0001c0006t0006g0150 a0001c0006t0006g0159 a0001c0006t0006g0168 a0001c0008t0002g0068 a0001c0008t0015g0030 a0001c0009t0002g0031 a0001c0009t0004g0103 a0001c0010t0003g0025 a0001c0010t0005g0163 a0001c0018t0001g0126 a0002c0004t0001g0089 a0002c0004t0001g0101 a0002c0004t0001g0122 a0002c0004t0004g0088 a0002c0004t0004g0095 a0002c0004t0004g0130 a0002c0004t0006g0143 a0002c0004t0006g0145 a0002c0004t0006g0151 a0002c0004t0006g0157 a0002c0004t0006g0165 a0002c0004t0028g0137 a0002c0005t0001g0127 a0002c0005t0002g0037 a0002c0005t0002g0040 a0002c0005t0002g0043 a0002c0005t0002g0066 a0002c0005t0003g0059 a0002c0005t0004g0121 a0002c0005t0005g0148 a0002c0005t0005g0158 a0002c0005t0006g0160 a0002c0005t0023g0032 a0002c0015t0013g0019 a0003c0007t0002g0041 a0003c0007t0004g0131 a0003c0007t0007g0073 a0003c0021t0003g0048 a0006c0024t0002g0054 a0011c0020t0003g0026 a0012c0012t0003g0050	75	174	0.4310	-6	c.216 others(23): Show c.2167-703_2167-698delTTTTTC	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	17/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74344868	TACACAC TACACAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02280.hp2 HG02486.hp1 others(11): Show HG01109.hp2 HG02280.hp2 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG03209.hp1 HG03225.hp2 HG03486.hp2 NA19043.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0004 others(6): Show a0001c0001 a0001c0002 a0002c0004 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0003c0023 a0003c0026	a0001c0001t0002 a0001c0001t0003 a0001c0002t0010 others(10): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0010 a0001c0002t0019 a0002c0004t0004 a0002c0004t0028 a0002c0005t0002 a0002c0015t0013 a0003c0003t0007 a0003c0003t0024 a0003c0007t0007 a0003c0023t0016 a0003c0026t0010	a0001c0001t0002g0069 a0001c0001t0003g0029 a0001c0002t0010g0004 others(11): Show a0001c0001t0002g0069 a0001c0001t0003g0029 a0001c0002t0010g0004 a0001c0002t0019g0002 a0002c0004t0004g0095 a0002c0004t0028g0137 a0002c0005t0002g0037 a0002c0005t0002g0066 a0002c0015t0013g0019 a0003c0003t0007g0020 a0003c0003t0024g0075 a0003c0007t0007g0073 a0003c0023t0016g0096 a0003c0026t0010g0005	14	174	0.0805	-6	c.136 others(25): Show c.1365-8216_1365-8211delGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74397508	TTCTCTC TTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01255.hp1 HG01884.hp1 others(8): Show HG01109.hp2 HG01255.hp1 HG01884.hp1 HG02145.hp1 HG02257.hp2 HG02280.hp2 HG02486.hp1 HG02559.hp2 HG02615.hp2 HG03098.hp1 NA18906.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0002c0015 a0001c0001 a0002c0005 a0002c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0014 a0001c0001t0022 a0002c0005t0002 a0002c0005t0006 a0002c0015t0013	a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 others(8): Show a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 a0001c0001t0003g0029 a0001c0001t0009g0084 a0001c0001t0009g0086 a0001c0001t0014g0051 a0001c0001t0022g0013 a0002c0005t0002g0066 a0002c0005t0006g0160 a0002c0015t0013g0019	11	174	0.0632	-6	c.455 others(25): Show c.455-26115_455-26110delGAGAGA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	5/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74442176	CAGAGAG CAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00597.hp2 others(19): Show HG00408.hp1 HG00408.hp2 HG00597.hp2 HG01257.hp2 HG01943.hp1 HG02004.hp1 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02155.hp2 HG04184.hp1 NA18951.hp1 NA18955.hp2 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18977.hp2 NA19065.hp1 NA19068.hp1 NA19074.hp2 NA19085.hp2 NA20905.hp1	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0001c0002 a0001c0018 others(3): Show a0001c0001 a0001c0002 a0001c0018 a0002c0004 a0002c0005 a0010c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0018t0001 a0002c0004t0001 a0002c0005t0001 a0002c0005t0002 a0002c0005t0004 a0002c0005t0005 a0010c0013t0003	a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 others(19): Show a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0003g0039 a0001c0001t0005g0154 a0001c0001t0005g0156 a0001c0001t0006g0144 a0001c0002t0001g0107 a0001c0002t0001g0114 a0001c0002t0001g0120 a0001c0002t0002g0015 a0001c0002t0004g0123 a0001c0002t0005g0146 a0001c0002t0005g0152 a0001c0018t0001g0126 a0002c0004t0001g0101 a0002c0005t0001g0127 a0002c0005t0002g0043 a0002c0005t0004g0121 a0002c0005t0005g0148 a0002c0005t0005g0158 a0010c0013t0003g0027	22	174	0.1264	-6	c.359 others(25): Show c.359-17242_359-17237delCTCTCT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74460772	CATATAT CATATAT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02109.hp2 HG02129.hp1 others(4): Show HG01081.hp2 HG02109.hp2 HG02129.hp1 HG02293.hp2 HG02451.hp2 HG02647.hp1 HG03041.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0010 a0002c0004 others(1): Show a0001c0001 a0001c0010 a0002c0004 a0003c0003	a0001c0001t0002 a0001c0001t0004 a0001c0001t0017 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0017 a0001c0010t0005 a0002c0004t0028 a0003c0003t0002 a0003c0003t0007	a0001c0001t0002g0038 a0001c0001t0004g0136 a0001c0001t0017g0171 others(4): Show a0001c0001t0002g0038 a0001c0001t0004g0136 a0001c0001t0017g0171 a0001c0010t0005g0163 a0002c0004t0028g0137 a0003c0003t0002g0052 a0003c0003t0007g0074	7	174	0.0402	-6	c.358 others(25): Show c.358+25678_358+25683delATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74470870	TTTGTTG TTTGTTG	T T	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00609.hp2 HG01071.hp1 others(83): Show HG00323.hp2 HG00609.hp2 HG01071.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01255.hp2 HG01257.hp1 HG01261.hp1 HG01884.hp1 HG01884.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp2 HG02055.hp1 HG02080.hp1 HG02083.hp2 HG02145.hp2 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02559.hp1 HG02615.hp2 HG02647.hp1 HG02647.hp2 HG02735.hp2 HG02809.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp1 HG03710.hp1 HG04199.hp2 NA18906.hp1 NA18906.hp2 NA18955.hp1 NA18959.hp1 NA18977.hp1 NA18998.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19085.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(6): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0011	a0001c0001 a0001c0002 a0001c0006 others(17): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0010 a0001c0019 a0002c0004 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0003c0021 a0003c0023 a0003c0026 a0004c0011 a0005c0022 a0006c0024 a0008c0016 a0009c0017 a0011c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(48): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0018 a0001c0001t0022 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0007 a0001c0002t0012 a0001c0002t0014 a0001c0002t0017 a0001c0002t0018 a0001c0002t0025 a0001c0002t0030 a0001c0006t0006 a0001c0008t0002 a0001c0008t0015 a0001c0010t0003 a0001c0019t0016 a0002c0004t0001 a0002c0004t0004 a0002c0004t0006 a0002c0004t0028 a0002c0005t0002 a0002c0005t0023 a0002c0015t0013 a0003c0003t0002 a0003c0003t0003 a0003c0003t0005 a0003c0003t0007 a0003c0003t0024 a0003c0007t0002 a0003c0021t0003 a0003c0023t0016 a0003c0026t0010 a0004c0011t0002 a0005c0022t0002 a0006c0024t0002 a0008c0016t0007 a0009c0017t0001 a0011c0020t0003	a0001c0001t0001g0099 a0001c0001t0001g0108 a0001c0001t0001g0133 others(83): Show a0001c0001t0001g0099 a0001c0001t0001g0108 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0003g0024 a0001c0001t0003g0061 a0001c0001t0003g0067 a0001c0001t0004g0090 a0001c0001t0004g0098 a0001c0001t0004g0102 a0001c0001t0004g0138 a0001c0001t0006g0153 a0001c0001t0008g0001 a0001c0001t0008g0006 a0001c0001t0009g0084 a0001c0001t0009g0086 a0001c0001t0011g0008 a0001c0001t0014g0051 a0001c0001t0015g0014 a0001c0001t0018g0173 a0001c0001t0022g0013 a0001c0002t0001g0097 a0001c0002t0001g0113 a0001c0002t0001g0117 a0001c0002t0001g0124 a0001c0002t0001g0128 a0001c0002t0002g0044 a0001c0002t0002g0070 a0001c0002t0003g0016 a0001c0002t0003g0028 a0001c0002t0003g0047 a0001c0002t0003g0055 a0001c0002t0004g0105 a0001c0002t0004g0119 a0001c0002t0005g0147 a0001c0002t0005g0155 a0001c0002t0007g0018 a0001c0002t0012g0011 a0001c0002t0014g0076 a0001c0002t0017g0170 a0001c0002t0018g0174 a0001c0002t0025g0087 a0001c0002t0030g0172 a0001c0006t0006g0159 a0001c0006t0006g0168 a0001c0008t0002g0068 a0001c0008t0015g0030 a0001c0010t0003g0025 a0001c0019t0016g0135 a0002c0004t0001g0089 a0002c0004t0004g0088 a0002c0004t0004g0095 a0002c0004t0006g0151 a0002c0004t0028g0137 a0002c0005t0002g0037 a0002c0005t0002g0040 a0002c0005t0023g0032 a0002c0015t0013g0019 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0002g0078 a0003c0003t0002g0079 a0003c0003t0002g0081 a0003c0003t0003g0077 a0003c0003t0005g0161 a0003c0003t0007g0020 a0003c0003t0007g0034 a0003c0003t0024g0075 a0003c0007t0002g0041 a0003c0021t0003g0048 a0003c0023t0016g0096 a0003c0026t0010g0005 a0004c0011t0002g0045 a0004c0011t0002g0071 a0005c0022t0002g0053 a0006c0024t0002g0054 a0008c0016t0007g0080 a0009c0017t0001g0115 a0011c0020t0003g0026	86	174	0.4943	-6	c.358 others(25): Show c.358+15580_358+15585delCAACAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74567314	ATTTTTT ATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02015.hp2 HG02109.hp2 others(5): Show HG01261.hp1 HG02015.hp2 HG02109.hp2 HG02280.hp1 HG02280.hp2 HG02895.hp2 NA19043.hp2 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0019 a0002c0004 others(2): Show a0001c0001 a0001c0019 a0002c0004 a0002c0005 a0002c0015	a0001c0001t0003 a0001c0001t0004 a0001c0019t0016 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0019t0016 a0002c0004t0001 a0002c0005t0023 a0002c0015t0013	a0001c0001t0003g0017 a0001c0001t0003g0067 a0001c0001t0004g0090 others(5): Show a0001c0001t0003g0017 a0001c0001t0003g0067 a0001c0001t0004g0090 a0001c0001t0004g0136 a0001c0019t0016g0135 a0002c0004t0001g0089 a0002c0005t0023g0032 a0002c0015t0013g0019	8	174	0.0460	-6	c.-80 others(25): Show c.-80-46128_-80-46123delAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74614433	TCGCCGC TCGCCGC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00323.hp2 HG00597.hp1 HG01071.hp1 others(69): Show HG00323.hp2 HG00597.hp1 HG01071.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01257.hp2 HG01261.hp1 HG02004.hp2 HG02055.hp1 HG02055.hp2 HG02083.hp2 HG02129.hp1 HG02145.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG02647.hp2 HG02735.hp2 HG02809.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03710.hp1 HG04184.hp1 HG04199.hp1 HG04199.hp2 NA18906.hp1 NA18906.hp2 NA18945.hp2 NA18961.hp1 NA18981.hp2 NA18998.hp2 NA19000.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19065.hp1 NA19068.hp2 NA19074.hp1 NA19077.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(7): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0010 a0011 a0012	a0001c0001 a0001c0002 a0001c0008 others(15): Show a0001c0001 a0001c0002 a0001c0008 a0001c0009 a0001c0010 a0001c0014 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0003c0021 a0004c0011 a0005c0022 a0006c0024 a0008c0016 a0010c0013 a0011c0020 a0012c0012	a0001c0001t0002 a0001c0001t0003 a0001c0001t0014 others(30): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0014 a0001c0001t0015 a0001c0001t0018 a0001c0002t0002 a0001c0002t0003 a0001c0002t0007 a0001c0002t0014 a0001c0002t0018 a0001c0008t0002 a0001c0008t0015 a0001c0009t0002 a0001c0010t0003 a0001c0014t0013 a0002c0005t0002 a0002c0005t0003 a0002c0005t0023 a0002c0015t0013 a0003c0003t0002 a0003c0003t0003 a0003c0003t0007 a0003c0003t0024 a0003c0007t0002 a0003c0007t0007 a0003c0021t0003 a0004c0011t0002 a0005c0022t0002 a0006c0024t0002 a0008c0016t0007 a0010c0013t0003 a0011c0020t0003 a0012c0012t0003	a0001c0001t0002g0038 a0001c0001t0002g0046 a0001c0001t0002g0062 others(69): Show a0001c0001t0002g0038 a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0003g0017 a0001c0001t0003g0023 a0001c0001t0003g0024 a0001c0001t0003g0029 a0001c0001t0003g0039 a0001c0001t0003g0042 a0001c0001t0003g0049 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0067 a0001c0001t0014g0051 a0001c0001t0015g0014 a0001c0001t0018g0173 a0001c0002t0002g0015 a0001c0002t0002g0021 a0001c0002t0002g0022 a0001c0002t0002g0044 a0001c0002t0002g0056 a0001c0002t0002g0065 a0001c0002t0002g0070 a0001c0002t0003g0016 a0001c0002t0003g0028 a0001c0002t0003g0047 a0001c0002t0003g0055 a0001c0002t0003g0058 a0001c0002t0003g0063 a0001c0002t0007g0018 a0001c0002t0007g0064 a0001c0002t0014g0076 a0001c0002t0018g0174 a0001c0008t0002g0068 a0001c0008t0015g0030 a0001c0009t0002g0031 a0001c0010t0003g0025 a0001c0014t0013g0057 a0002c0005t0002g0037 a0002c0005t0002g0040 a0002c0005t0002g0043 a0002c0005t0002g0066 a0002c0005t0003g0059 a0002c0005t0023g0032 a0002c0015t0013g0019 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0002g0052 a0003c0003t0002g0078 a0003c0003t0002g0079 a0003c0003t0002g0081 a0003c0003t0003g0077 a0003c0003t0007g0020 a0003c0003t0007g0034 a0003c0003t0007g0074 a0003c0003t0024g0075 a0003c0007t0002g0041 a0003c0007t0007g0073 a0003c0021t0003g0048 a0004c0011t0002g0045 a0004c0011t0002g0071 a0005c0022t0002g0053 a0006c0024t0002g0054 a0008c0016t0007g0080 a0010c0013t0003g0027 a0011c0020t0003g0026 a0012c0012t0003g0050	72	174	0.4138	-6	c.-12 others(15): Show c.-129_-124delGCGGCG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/23	93322		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74615962	TACACAC TACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG00438.hp2 HG00597.hp1 others(63): Show HG00323.hp2 HG00438.hp2 HG00597.hp1 HG00597.hp2 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01943.hp2 HG01952.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02055.hp2 HG02080.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp2 HG02145.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02486.hp2 HG02559.hp2 HG02809.hp1 HG02922.hp2 HG02965.hp1 HG03209.hp1 HG03225.hp2 HG03471.hp1 HG03486.hp2 HG03669.hp2 HG03710.hp1 HG04199.hp1 HG04199.hp2 HG06807.hp1 NA18951.hp2 NA18955.hp1 NA18959.hp2 NA18961.hp1 NA18977.hp1 NA18981.hp2 NA18998.hp2 NA19000.hp1 NA19030.hp1 NA19068.hp1 NA19068.hp2 NA19074.hp2 NA19077.hp1 NA19085.hp1 NA19240.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0010 a0011	a0001c0001 a0001c0002 a0001c0006 others(12): Show a0001c0001 a0001c0002 a0001c0006 a0001c0010 a0001c0014 a0002c0004 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0003c0023 a0004c0011 a0006c0024 a0010c0013 a0011c0020	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(34): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0017 a0001c0001t0018 a0001c0001t0026 a0001c0001t0027 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0009 a0001c0002t0017 a0001c0002t0025 a0001c0002t0030 a0001c0006t0006 a0001c0010t0003 a0001c0010t0005 a0001c0014t0013 a0002c0004t0004 a0002c0004t0006 a0002c0005t0003 a0002c0005t0005 a0002c0005t0006 a0002c0015t0013 a0003c0003t0005 a0003c0003t0007 a0003c0003t0012 a0003c0007t0007 a0003c0023t0016 a0004c0011t0002 a0006c0024t0002 a0010c0013t0003 a0011c0020t0003	a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0069 others(63): Show a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0003g0023 a0001c0001t0003g0024 a0001c0001t0003g0029 a0001c0001t0003g0049 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0067 a0001c0001t0004g0098 a0001c0001t0004g0136 a0001c0001t0005g0154 a0001c0001t0005g0156 a0001c0001t0006g0149 a0001c0001t0006g0153 a0001c0001t0017g0171 a0001c0001t0018g0173 a0001c0001t0026g0093 a0001c0001t0027g0094 a0001c0002t0001g0117 a0001c0002t0002g0015 a0001c0002t0002g0021 a0001c0002t0002g0022 a0001c0002t0002g0056 a0001c0002t0002g0065 a0001c0002t0002g0070 a0001c0002t0003g0028 a0001c0002t0003g0047 a0001c0002t0003g0058 a0001c0002t0003g0063 a0001c0002t0005g0146 a0001c0002t0005g0147 a0001c0002t0005g0152 a0001c0002t0005g0155 a0001c0002t0005g0162 a0001c0002t0005g0164 a0001c0002t0006g0167 a0001c0002t0009g0085 a0001c0002t0017g0170 a0001c0002t0025g0087 a0001c0002t0030g0172 a0001c0006t0006g0150 a0001c0006t0006g0168 a0001c0010t0003g0025 a0001c0010t0005g0163 a0001c0014t0013g0057 a0002c0004t0004g0095 a0002c0004t0006g0145 a0002c0004t0006g0151 a0002c0004t0006g0165 a0002c0005t0003g0059 a0002c0005t0005g0148 a0002c0005t0005g0158 a0002c0005t0006g0160 a0002c0015t0013g0019 a0003c0003t0005g0161 a0003c0003t0007g0020 a0003c0003t0012g0012 a0003c0007t0007g0073 a0003c0023t0016g0096 a0004c0011t0002g0071 a0006c0024t0002g0054 a0010c0013t0003g0027 a0011c0020t0003g0026	66	174	0.3793	-6	c.-16 others(17): Show c.-1658_-1653delGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding		1304		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2124433	AACACAC AACACAC	A A	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG03239.hp2 HG02074.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0005 a0001c0009t0004 a0001c0001t0005 a0001c0009t0004	a0001c0001t0005g0115 a0001c0009t0004g0005 a0001c0001t0005g0115 a0001c0009t0004g0005	2	116	0.0172	-6	c.-14 others(27): Show c.-145+23829_-145+23834delACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2148942	CTGTGTG CTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02809.hp1 HG02647.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0059 a0001c0001t0003g0058 a0001c0001t0001g0059 a0001c0001t0003g0058	2	116	0.0172	-6	c.-14 others(27): Show c.-145+48327_-145+48332delGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2154611	GACTTTT GACTTTT	G G	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG04184.hp2 HG01169.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0002	a0001c0001t0001g0049 a0001c0004t0002g0048 a0001c0001t0001g0049 a0001c0004t0002g0048	2	116	0.0172	-6	c.-14 others(27): Show c.-145+53977_-145+53982delTTACTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2177656	TTGTGTG TTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02258.hp1 HG03453.hp1 others(2): Show HG02257.hp1 HG02258.hp1 HG03453.hp1 HG03453.hp2 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0021 others(1): Show a0001c0002 a0001c0006 a0001c0021 a0001c0022	a0001c0002t0001 a0001c0006t0002 a0001c0021t0002 others(1): Show a0001c0002t0001 a0001c0006t0002 a0001c0021t0002 a0001c0022t0003	a0001c0002t0001g0027 a0001c0006t0002g0026 a0001c0006t0002g0060 others(2): Show a0001c0002t0001g0027 a0001c0006t0002g0026 a0001c0006t0002g0060 a0001c0021t0002g0025 a0001c0022t0003g0083	5	116	0.0431	-6	c.-14 others(27): Show c.-145+77049_-145+77054delGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2234370	CAAAAAA CAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01891.hp1 HG02451.hp1 others(13): Show HG01243.hp1 HG01891.hp1 HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp2 HG02717.hp2 HG03130.hp2 HG03139.hp1 HG03453.hp1 HG03471.hp2 HG03486.hp2 HG03540.hp1 HG03654.hp2 HG06807.hp2 NA18906.hp2	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0006 a0009	a0001c0001 a0001c0002 a0001c0006 others(5): Show a0001c0001 a0001c0002 a0001c0006 a0001c0024 a0003c0008 a0005c0012 a0006c0028 a0009c0027	a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 others(7): Show a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 a0001c0002t0003 a0001c0006t0002 a0001c0024t0015 a0003c0008t0013 a0005c0012t0009 a0006c0028t0001 a0009c0027t0001	a0001c0001t0003g0008 a0001c0001t0003g0101 a0001c0001t0008g0043 others(13): Show a0001c0001t0003g0008 a0001c0001t0003g0101 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0002t0001g0021 a0001c0002t0001g0027 a0001c0002t0001g0029 a0001c0002t0001g0108 a0001c0002t0003g0024 a0001c0002t0003g0114 a0001c0006t0002g0051 a0001c0024t0015g0057 a0003c0008t0013g0109 a0005c0012t0009g0093 a0006c0028t0001g0023 a0009c0027t0001g0007	16	116	0.1379	-6	c.-14 others(29): Show c.-144-104792_-144-104787delAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287687	AGAAGAG AGAAGAG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02572.hp2 HG01243.hp1 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0002t0005 a0001c0001t0008 a0001c0002t0005	a0001c0001t0008g0053 a0001c0002t0005g0003 a0001c0001t0008g0053 a0001c0002t0005g0003	2	116	0.0172	-6	c.-14 others(27): Show c.-144-51485_-144-51480delGGAAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2326485	TACACAC TACACAC	T T	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02897.hp1 HG01169.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0005 a0001c0005t0006 a0001c0002t0005 a0001c0005t0006	a0001c0002t0005g0002 a0001c0005t0006g0010 a0001c0002t0005g0002 a0001c0005t0006g0010	2	116	0.0172	-6	c.-14 others(27): Show c.-144-12655_-144-12650delCACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2350576	AATAGAG AATAGAG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00735.hp2 HG01169.hp1 others(32): Show HG00438.hp2 HG00735.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG02074.hp1 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02451.hp2 HG02486.hp1 HG02523.hp2 HG02572.hp1 HG02602.hp2 HG02647.hp1 HG02738.hp2 HG03041.hp2 HG03130.hp2 HG03139.hp1 HG03209.hp1 HG03209.hp2 HG03654.hp2 HG03831.hp1 HG03927.hp1 HG03927.hp2 HG04184.hp1 HG04184.hp2 NA18906.hp2 NA18990.hp1 NA18990.hp2	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0006 a0008	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0020 a0001c0025 a0003c0008 a0005c0012 a0006c0028 a0008c0026	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 others(22): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0006 a0001c0005t0010 a0001c0006t0004 a0001c0007t0003 a0001c0007t0004 a0001c0009t0004 a0001c0009t0014 a0001c0020t0002 a0001c0025t0001 a0003c0008t0013 a0005c0012t0009 a0006c0028t0001 a0008c0026t0017	a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 others(32): Show a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0059 a0001c0001t0003g0008 a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0002t0001g0108 a0001c0002t0001g0110 a0001c0002t0002g0035 a0001c0002t0002g0102 a0001c0003t0001g0075 a0001c0003t0001g0116 a0001c0003t0002g0072 a0001c0003t0003g0070 a0001c0003t0011g0113 a0001c0004t0001g0020 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0004t0002g0076 a0001c0004t0006g0068 a0001c0005t0006g0010 a0001c0005t0006g0032 a0001c0005t0010g0001 a0001c0006t0004g0004 a0001c0007t0003g0034 a0001c0007t0004g0066 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0020t0002g0082 a0001c0025t0001g0100 a0003c0008t0013g0109 a0005c0012t0009g0093 a0006c0028t0001g0023 a0008c0026t0017g0047	35	116	0.3017	-6	c.-89 others(25): Show c.-89+11344_-89+11349delATAGAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2390215	AGTGTGT AGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02717.hp1 HG02809.hp2 others(1): Show HG02572.hp1 HG02717.hp1 HG02809.hp2 HG03540.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0019 a0001c0002 a0003c0019	a0001c0002t0001 a0001c0002t0003 a0001c0002t0007 others(1): Show a0001c0002t0001 a0001c0002t0003 a0001c0002t0007 a0003c0019t0002	a0001c0002t0001g0110 a0001c0002t0003g0024 a0001c0002t0007g0009 others(1): Show a0001c0002t0001g0110 a0001c0002t0003g0024 a0001c0002t0007g0009 a0003c0019t0002g0031	4	116	0.0345	-6	c.-89 others(25): Show c.-89+51013_-89+51018delGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400422	TATATAC TATATAC	T T	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03453.hp1 HG06807.hp2 HG02818.hp2 HG03453.hp1 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0013 a0001c0002 a0001c0013	a0001c0002t0001 a0001c0002t0003 a0001c0013t0007 a0001c0002t0001 a0001c0002t0003 a0001c0013t0007	a0001c0002t0001g0027 a0001c0002t0003g0114 a0001c0013t0007g0056 a0001c0002t0001g0027 a0001c0002t0003g0114 a0001c0013t0007g0056	3	116	0.0259	-6	c.-89 others(25): Show c.-89+61195_-89+61200delCATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2520259	CTTTTTT CTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01169.hp1 HG01256.hp1 others(7): Show HG00738.hp2 HG01169.hp1 HG01256.hp1 HG01258.hp2 HG01261.hp1 HG02486.hp2 HG02602.hp1 HG02738.hp1 HG03041.hp1 HG03239.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0007c0018	a0001c0001t0001 a0001c0001t0005 a0001c0002t0001 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0002t0001 a0001c0003t0001 a0001c0003t0003 a0001c0005t0006 a0007c0018t0003	a0001c0001t0001g0033 a0001c0001t0005g0018 a0001c0001t0005g0019 others(7): Show a0001c0001t0001g0033 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0002t0001g0038 a0001c0003t0001g0037 a0001c0003t0003g0046 a0001c0005t0006g0010 a0007c0018t0003g0062	10	116	0.0862	-6	c.-88 others(25): Show c.-88-51131_-88-51126delTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2522146	AGTTTGT AGTTTGT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00735.hp1 HG00738.hp1 others(10): Show HG00140.hp2 HG00735.hp1 HG00738.hp1 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG02818.hp2 HG02897.hp1 HG02965.hp1 HG03139.hp1 HG03471.hp2 HG06807.hp1 NA19043.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0013 a0001c0021 a0003c0008	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(8): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0005 a0001c0002t0007 a0001c0004t0001 a0001c0013t0007 a0001c0021t0002 a0003c0008t0013	a0001c0001t0002g0028 a0001c0001t0003g0095 a0001c0001t0005g0098 others(10): Show a0001c0001t0002g0028 a0001c0001t0003g0095 a0001c0001t0005g0098 a0001c0001t0008g0053 a0001c0002t0001g0021 a0001c0002t0005g0002 a0001c0002t0007g0080 a0001c0002t0007g0112 a0001c0004t0001g0036 a0001c0004t0001g0097 a0001c0013t0007g0056 a0001c0021t0002g0025 a0003c0008t0013g0109	13	116	0.1121	-6	c.-88 others(25): Show c.-88-49267_-88-49262delTTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2575806	CTTCTTT CTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01243.hp2 HG01361.hp1 others(14): Show HG00438.hp1 HG01243.hp2 HG01361.hp1 HG01884.hp2 HG01978.hp1 HG02257.hp2 HG02258.hp2 HG02523.hp1 HG02523.hp2 HG02615.hp2 HG02809.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03540.hp1 HG03927.hp2 NA18990.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0004c0011	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0003t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0010 a0001c0006t0002 a0001c0007t0003 a0004c0011t0003	a0001c0001t0002g0074 a0001c0001t0003g0058 a0001c0001t0003g0101 others(14): Show a0001c0001t0002g0074 a0001c0001t0003g0058 a0001c0001t0003g0101 a0001c0001t0008g0089 a0001c0001t0009g0052 a0001c0002t0001g0027 a0001c0002t0002g0035 a0001c0002t0002g0102 a0001c0002t0003g0024 a0001c0003t0001g0014 a0001c0003t0001g0075 a0001c0004t0002g0076 a0001c0004t0006g0044 a0001c0005t0010g0085 a0001c0006t0002g0060 a0001c0007t0003g0034 a0004c0011t0003g0065	17	116	0.1466	-6	c.55+ others(21): Show c.55+4251_55+4256delCTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2580033	TTGTATG TTGTATG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02258.hp2 HG01884.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0009 a0001c0007t0003 a0001c0001t0009 a0001c0007t0003	a0001c0001t0009g0052 a0001c0007t0003g0034 a0001c0001t0009g0052 a0001c0007t0003g0034	2	116	0.0172	-6	c.55+ others(21): Show c.55+8479_55+8484delATGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2591352	CTTTTTT CTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00738.hp1 others(27): Show HG00438.hp1 HG00438.hp2 HG00738.hp1 HG00738.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01361.hp2 HG01884.hp1 HG01891.hp2 HG01978.hp1 HG02074.hp1 HG02074.hp2 HG02132.hp1 HG02165.hp1 HG02451.hp2 HG02523.hp1 HG02602.hp2 HG02809.hp1 HG03139.hp2 HG03927.hp1 HG06807.hp2 NA18990.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0020 a0001c0025	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0006 a0001c0004t0001 a0001c0004t0006 a0001c0005t0006 a0001c0006t0003 a0001c0007t0004 a0001c0007t0016 a0001c0009t0004 a0001c0020t0002 a0001c0025t0001	a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 others(27): Show a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0002g0055 a0001c0001t0002g0074 a0001c0001t0003g0058 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0002t0001g0088 a0001c0002t0003g0114 a0001c0002t0004g0017 a0001c0002t0006g0071 a0001c0002t0007g0112 a0001c0003t0001g0014 a0001c0003t0001g0075 a0001c0003t0006g0040 a0001c0004t0001g0020 a0001c0004t0001g0097 a0001c0004t0001g0106 a0001c0004t0006g0044 a0001c0004t0006g0068 a0001c0005t0006g0010 a0001c0006t0003g0069 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0020t0002g0082 a0001c0025t0001g0100	30	116	0.2586	-6	c.55+ others(23): Show c.55+19819_55+19824delTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2612107	TACACAC TACACAC	T T	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA18906.hp1 NA19043.hp1 HG03041.hp1 NA18906.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0015 a0001c0001 a0002c0015	a0001c0001t0001 a0001c0001t0003 a0002c0015t0003 a0001c0001t0001 a0001c0001t0003 a0002c0015t0003	a0001c0001t0001g0033 a0001c0001t0003g0095 a0002c0015t0003g0103 a0001c0001t0001g0033 a0001c0001t0003g0095 a0002c0015t0003g0103	3	116	0.0259	-6	c.55+ others(23): Show c.55+40577_55+40582delCACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2631873	AAAAAAC AAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01891.hp1 HG02257.hp2 others(10): Show HG01243.hp1 HG01891.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02886.hp2 HG03130.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA19043.hp2 NA20300.hp1	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0001c0021 a0002c0015 a0009c0027	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 a0001c0002t0003 a0001c0002t0012 a0001c0006t0002 a0001c0021t0002 a0002c0015t0003 a0009c0027t0001	a0001c0001t0002g0030 a0001c0001t0002g0086 a0001c0001t0003g0008 others(10): Show a0001c0001t0002g0030 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0002t0001g0029 a0001c0002t0001g0108 a0001c0002t0003g0114 a0001c0002t0012g0013 a0001c0006t0002g0026 a0001c0021t0002g0025 a0002c0015t0003g0103 a0009c0027t0001g0007	13	116	0.1121	-6	c.55+ others(23): Show c.55+60321_55+60326delCAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2658965	GACACAC GACACAC	G G	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp1 HG00735.hp2 others(21): Show HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01243.hp2 HG01891.hp1 HG02074.hp2 HG02572.hp2 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02717.hp2 HG02738.hp1 HG03209.hp2 HG03239.hp2 HG03516.hp1 HG03540.hp2 HG03654.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0006	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0009 a0002c0014 a0005c0012 a0006c0028	a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 others(16): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0006 a0001c0007t0004 a0001c0007t0016 a0001c0009t0014 a0002c0014t0001 a0005c0012t0009 a0006c0028t0001	a0001c0001t0003g0101 a0001c0001t0005g0054 a0001c0001t0005g0115 others(21): Show a0001c0001t0003g0101 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0001t0008g0043 a0001c0002t0001g0029 a0001c0002t0001g0038 a0001c0002t0002g0035 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0003g0114 a0001c0002t0005g0003 a0001c0002t0007g0009 a0001c0002t0007g0087 a0001c0003t0001g0045 a0001c0004t0001g0036 a0001c0004t0002g0022 a0001c0005t0001g0090 a0001c0005t0006g0032 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0009t0014g0039 a0002c0014t0001g0016 a0005c0012t0009g0093 a0006c0028t0001g0023	24	116	0.2069	-6	c.56- others(23): Show c.56-77210_56-77205delCACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2708727	TCACACA TCACACA	T T	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02809.hp2 HG02897.hp2 others(2): Show HG00738.hp2 HG02809.hp2 HG02897.hp2 HG03471.hp1 HG03486.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0001c0023 others(1): Show a0001c0001 a0001c0005 a0001c0023 a0003c0019	a0001c0001t0003 a0001c0001t0005 a0001c0005t0010 others(2): Show a0001c0001t0003 a0001c0001t0005 a0001c0005t0010 a0001c0023t0004 a0003c0019t0002	a0001c0001t0003g0006 a0001c0001t0005g0054 a0001c0005t0010g0085 others(2): Show a0001c0001t0003g0006 a0001c0001t0005g0054 a0001c0005t0010g0085 a0001c0023t0004g0041 a0003c0019t0002g0031	5	116	0.0431	-6	c.56- others(23): Show c.56-27452_56-27447delACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2761437	CCTGTGT CCTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03130.hp1 HG02965.hp1 HG03130.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0016 a0001c0002 a0002c0016	a0001c0002t0007 a0002c0016t0003 a0001c0002t0007 a0002c0016t0003	a0001c0002t0007g0080 a0002c0016t0003g0079 a0001c0002t0007g0080 a0002c0016t0003g0079	2	116	0.0172	-6	c.358 others(25): Show c.358+15741_358+15746delCTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2776274	CTTTTTT CTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00438.hp2 others(62): Show HG00140.hp1 HG00140.hp2 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp2 HG00738.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01884.hp1 HG01884.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02074.hp2 HG02132.hp2 HG02165.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp2 HG02602.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03239.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 NA18906.hp2 NA18990.hp1 NA19043.hp2 NA20300.hp2	a0001 a0004 a0005 others(3): Show a0001 a0004 a0005 a0006 a0007 a0008	a0001c0001 a0001c0002 a0001c0003 others(16): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0020 a0001c0023 a0001c0024 a0001c0025 a0004c0011 a0005c0012 a0006c0028 a0007c0018 a0008c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(35): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0011 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0009 a0001c0005t0010 a0001c0006t0002 a0001c0006t0004 a0001c0007t0016 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0013t0007 a0001c0020t0002 a0001c0023t0004 a0001c0024t0015 a0001c0025t0001 a0004c0011t0003 a0005c0012t0009 a0006c0028t0001 a0007c0018t0003 a0008c0026t0017	a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0050 others(62): Show a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0099 a0001c0001t0002g0028 a0001c0001t0002g0055 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0003g0058 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0008g0053 a0001c0001t0009g0052 a0001c0002t0001g0038 a0001c0002t0001g0088 a0001c0002t0002g0035 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0003g0024 a0001c0002t0005g0002 a0001c0002t0005g0003 a0001c0002t0006g0071 a0001c0002t0007g0009 a0001c0003t0001g0014 a0001c0003t0001g0037 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0003t0002g0107 a0001c0003t0003g0015 a0001c0003t0003g0046 a0001c0003t0003g0070 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0006g0044 a0001c0004t0006g0068 a0001c0005t0001g0096 a0001c0005t0006g0010 a0001c0005t0006g0032 a0001c0005t0009g0091 a0001c0005t0010g0001 a0001c0006t0002g0026 a0001c0006t0002g0060 a0001c0006t0004g0004 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0077 a0001c0013t0007g0056 a0001c0020t0002g0082 a0001c0023t0004g0041 a0001c0024t0015g0057 a0001c0025t0001g0100 a0004c0011t0003g0111 a0005c0012t0009g0093 a0006c0028t0001g0023 a0007c0018t0003g0062 a0008c0026t0017g0047	65	116	0.5603	-6	c.358 others(25): Show c.358+30591_358+30596delTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2782465	CTGTGTG CTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00735.hp1 HG00738.hp1 others(10): Show HG00140.hp1 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG02451.hp1 HG02523.hp2 HG02683.hp1 HG02683.hp2 HG03239.hp2 HG03516.hp1 HG03654.hp2 HG03831.hp1 HG03927.hp2	a0001 a0006 a0009 a0001 a0006 a0009	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0006c0028 a0009c0027	a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 others(7): Show a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 a0001c0002t0007 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0006c0028t0001 a0009c0027t0001	a0001c0001t0001g0099 a0001c0001t0005g0054 a0001c0001t0005g0115 others(10): Show a0001c0001t0001g0099 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0002t0002g0035 a0001c0002t0002g0063 a0001c0002t0007g0112 a0001c0003t0001g0094 a0001c0004t0001g0036 a0001c0004t0002g0022 a0001c0004t0002g0076 a0001c0005t0001g0090 a0006c0028t0001g0023 a0009c0027t0001g0007	13	116	0.1121	-6	c.358 others(25): Show c.358+36814_358+36819delGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2804065	GCACACA GCACACA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01891.hp2 HG02258.hp1 others(6): Show HG01884.hp2 HG01891.hp2 HG02258.hp1 HG02615.hp2 HG02818.hp1 HG02886.hp2 HG03130.hp2 HG03540.hp1 NA18906.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0006 others(2): Show a0001c0001 a0001c0002 a0001c0006 a0002c0017 a0005c0012	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0002t0001 a0001c0002t0003 a0001c0006t0002 a0001c0006t0003 a0002c0017t0008 a0005c0012t0009	a0001c0001t0002g0030 a0001c0001t0003g0101 a0001c0001t0009g0052 others(6): Show a0001c0001t0002g0030 a0001c0001t0003g0101 a0001c0001t0009g0052 a0001c0002t0001g0108 a0001c0002t0003g0024 a0001c0006t0002g0026 a0001c0006t0003g0069 a0002c0017t0008g0067 a0005c0012t0009g0093	9	116	0.0776	-6	c.359 others(25): Show c.359-15393_359-15388delACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2878553	CTGTGTG CTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02165.hp1 HG02451.hp1 others(11): Show HG00438.hp2 HG02165.hp1 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02683.hp1 HG02818.hp2 HG02886.hp1 HG03239.hp1 HG03516.hp1 HG03831.hp1 HG04184.hp2 NA18990.hp1 NA19043.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0013 a0001c0020 a0009c0027	a0001c0001t0002 a0001c0002t0002 a0001c0003t0001 others(7): Show a0001c0001t0002 a0001c0002t0002 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0009 a0001c0013t0007 a0001c0020t0002 a0009c0027t0001	a0001c0001t0002g0086 a0001c0002t0002g0063 a0001c0003t0001g0014 others(11): Show a0001c0001t0002g0086 a0001c0002t0002g0063 a0001c0003t0001g0014 a0001c0003t0001g0116 a0001c0004t0001g0020 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0004t0002g0064 a0001c0005t0001g0090 a0001c0005t0001g0104 a0001c0005t0009g0091 a0001c0013t0007g0056 a0001c0020t0002g0082 a0009c0027t0001g0007	14	116	0.1207	-6	c.653 others(23): Show c.653-4560_653-4555delGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2882083	CCAGGAG CCAGGAG	C C	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02559.hp2 HG02622.hp2 others(2): Show HG02486.hp1 HG02559.hp2 HG02622.hp2 HG03139.hp1 HG03486.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0006 a0001c0024 others(1): Show a0001c0001 a0001c0006 a0001c0024 a0003c0008	a0001c0001t0003 a0001c0006t0002 a0001c0024t0015 others(2): Show a0001c0001t0003 a0001c0006t0002 a0001c0024t0015 a0003c0008t0001 a0003c0008t0013	a0001c0001t0003g0008 a0001c0006t0002g0051 a0001c0024t0015g0057 others(2): Show a0001c0001t0003g0008 a0001c0006t0002g0051 a0001c0024t0015g0057 a0003c0008t0001g0084 a0003c0008t0013g0109	5	116	0.0431	-6	c.653 others(23): Show c.653-1058_653-1053delGAGCAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2983213	CAAAAAA CAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00735.hp1 HG02559.hp2 others(1): Show HG00438.hp1 HG00735.hp1 HG02559.hp2 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0006	a0001c0001t0002 a0001c0003t0001 a0001c0004t0001 others(1): Show a0001c0001t0002 a0001c0003t0001 a0001c0004t0001 a0001c0006t0002	a0001c0001t0002g0074 a0001c0003t0001g0116 a0001c0004t0001g0036 others(1): Show a0001c0001t0002g0074 a0001c0003t0001g0116 a0001c0004t0001g0036 a0001c0006t0002g0051	4	116	0.0345	-6	c.135 others(25): Show c.1359-5095_1359-5090delAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2987231	AAACAGT AAACAGT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG03041.hp2 HG03209.hp1 HG02572.hp1 HG03041.hp2 HG03209.hp1	a0001 a0001	a0001c0002 a0001c0005 a0001c0006 a0001c0002 a0001c0005 a0001c0006	a0001c0002t0001 a0001c0005t0010 a0001c0006t0004 a0001c0002t0001 a0001c0005t0010 a0001c0006t0004	a0001c0002t0001g0110 a0001c0005t0010g0001 a0001c0006t0004g0004 a0001c0002t0001g0110 a0001c0005t0010g0001 a0001c0006t0004g0004	3	116	0.0259	-6	c.135 others(25): Show c.1359-1111_1359-1106delCAGTAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994594	CATATAT CATATAT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG03041.hp2 HG03139.hp1 others(1): Show HG02572.hp1 HG03041.hp2 HG03139.hp1 HG03209.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0005 a0001c0006 others(1): Show a0001c0002 a0001c0005 a0001c0006 a0003c0008	a0001c0002t0001 a0001c0005t0010 a0001c0006t0004 others(1): Show a0001c0002t0001 a0001c0005t0010 a0001c0006t0004 a0003c0008t0013	a0001c0002t0001g0110 a0001c0005t0010g0001 a0001c0006t0004g0004 others(1): Show a0001c0002t0001g0110 a0001c0005t0010g0001 a0001c0006t0004g0004 a0003c0008t0013g0109	4	116	0.0345	-6	c.148 others(25): Show c.1486+6137_1486+6142delATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3011906	TGATGAG TGATGAG	T T	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01169.hp2 HG01243.hp1 others(8): Show HG00738.hp1 HG01169.hp2 HG01243.hp1 HG02257.hp2 HG02258.hp2 HG02602.hp1 HG02602.hp2 HG02647.hp2 HG02683.hp1 HG02886.hp2 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0002t0002 a0001c0002t0007 a0001c0003t0003 a0001c0007t0003 a0001c0007t0004 a0001c0010t0003	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0002g0030 others(8): Show a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0002g0030 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0002t0002g0063 a0001c0002t0007g0112 a0001c0003t0003g0046 a0001c0007t0003g0034 a0001c0007t0004g0066 a0001c0010t0003g0011	11	116	0.0948	-6	c.148 others(27): Show c.1487-14179_1487-14174delAGGATG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3014047	TACACAC TACACAC	T T	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01257.hp2 HG01978.hp1 others(1): Show HG01175.hp1 HG01257.hp2 HG01978.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 others(1): Show a0001c0001 a0001c0004 a0001c0005 a0001c0010	a0001c0001t0005 a0001c0004t0006 a0001c0005t0010 others(1): Show a0001c0001t0005 a0001c0004t0006 a0001c0005t0010 a0001c0010t0003	a0001c0001t0005g0098 a0001c0004t0006g0044 a0001c0005t0010g0085 others(1): Show a0001c0001t0005g0098 a0001c0004t0006g0044 a0001c0005t0010g0085 a0001c0010t0003g0077	4	116	0.0345	-6	c.148 others(27): Show c.1487-12020_1487-12015delACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3019765	AATATAT AATATAT	A A	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02622.hp2 HG03209.hp1 others(1): Show HG02559.hp1 HG02622.hp2 HG03209.hp1 HG03453.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0005 a0001c0006 others(1): Show a0001c0002 a0001c0005 a0001c0006 a0003c0008	a0001c0002t0001 a0001c0005t0001 a0001c0006t0004 others(1): Show a0001c0002t0001 a0001c0005t0001 a0001c0006t0004 a0003c0008t0001	a0001c0002t0001g0027 a0001c0005t0001g0104 a0001c0006t0004g0004 others(1): Show a0001c0002t0001g0027 a0001c0005t0001g0104 a0001c0006t0004g0004 a0003c0008t0001g0084	4	116	0.0345	-6	c.148 others(25): Show c.1487-6309_1487-6304delTATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar

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