Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
IL3RA_chrX_1331785_1387689	1365454	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0105 a0001c0001t0003g0105	1	115	0.0087	-9	c.874 others(24): Show c.874+211_874+219delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365481	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01256.hp2 HG02165.hp1 others(9): Show HG01123.hp1 HG01256.hp2 HG02165.hp1 HG02280.hp1 HG02451.hp2 HG02886.hp2 HG02922.hp2 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03490.hp2 HG03710.hp1	a0001 a0004 a0011 a0001 a0004 a0011	a0001c0001 a0001c0020 a0004c0018 others(1): Show a0001c0001 a0001c0020 a0004c0018 a0011c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0020t0009 a0004c0018t0003 a0011c0014t0004	a0001c0001t0001g0031 a0001c0001t0001g0103 a0001c0001t0001g0104 others(9): Show a0001c0001t0001g0031 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0002g0057 a0001c0001t0002g0063 a0001c0001t0003g0014 a0001c0001t0003g0081 a0001c0001t0004g0060 a0001c0001t0004g0067 a0001c0020t0009g0098 a0004c0018t0003g0112 a0011c0014t0004g0044	12	115	0.1044	-9	c.874 others(24): Show c.874+232_874+240delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365502	CGGGTGAG others(2): Show CGGGTGAGCG	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01123.hp1 HG01975.hp2 others(18): Show HG00558.hp1 HG01123.hp1 HG01975.hp2 HG02145.hp2 HG02165.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02602.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG03139.hp1 HG03195.hp1 HG03453.hp2 HG04228.hp2 HG06807.hp2 NA18951.hp1 NA18995.hp2 NA19080.hp1 NA20300.hp1	a0001 a0004 a0005 others(1): Show a0001 a0004 a0005 a0016	a0001c0001 a0001c0020 a0004c0018 others(2): Show a0001c0001 a0001c0020 a0004c0018 a0005c0012 a0016c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0015 a0001c0020t0009 a0004c0018t0003 a0005c0012t0003 a0016c0004t0007	a0001c0001t0001g0031 a0001c0001t0001g0104 a0001c0001t0001g0111 others(18): Show a0001c0001t0001g0031 a0001c0001t0001g0104 a0001c0001t0001g0111 a0001c0001t0003g0009 a0001c0001t0003g0021 a0001c0001t0003g0023 a0001c0001t0003g0081 a0001c0001t0003g0094 a0001c0001t0003g0113 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0062 a0001c0001t0004g0067 a0001c0001t0004g0074 a0001c0001t0004g0092 a0001c0001t0006g0080 a0001c0001t0015g0096 a0001c0020t0009g0098 a0004c0018t0003g0112 a0005c0012t0003g0020 a0016c0004t0007g0093	21	115	0.1826	-9	c.874 others(24): Show c.874+256_874+264delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365517	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0030	1	115	0.0087	-9	c.874 others(24): Show c.874+283_874+291delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365610	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00558.hp1 HG01069.hp1 others(41): Show HG00140.hp1 HG00558.hp1 HG01069.hp1 HG01070.hp1 HG01123.hp1 HG01192.hp2 HG01256.hp2 HG01433.hp2 HG01975.hp2 HG02004.hp1 HG02145.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02622.hp2 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG03098.hp2 HG03139.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03490.hp2 HG03710.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18948.hp1 NA18951.hp1 NA18966.hp1 NA18995.hp2 NA19005.hp2 NA19058.hp1 NA19080.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1	a0001 a0006 a0011 others(2): Show a0001 a0006 a0011 a0015 a0016	a0001c0001 a0006c0011 a0011c0014 others(2): Show a0001c0001 a0006c0011 a0011c0014 a0015c0017 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0006c0011t0004 a0011c0014t0004 a0015c0017t0001 a0016c0004t0007	a0001c0001t0001g0026 a0001c0001t0001g0031 a0001c0001t0001g0035 others(41): Show a0001c0001t0001g0026 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0001t0001g0103 a0001c0001t0001g0111 a0001c0001t0002g0038 a0001c0001t0002g0063 a0001c0001t0003g0009 a0001c0001t0003g0014 a0001c0001t0003g0021 a0001c0001t0003g0023 a0001c0001t0003g0036 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0083 a0001c0001t0003g0088 a0001c0001t0003g0094 a0001c0001t0003g0106 a0001c0001t0003g0107 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0004g0040 a0001c0001t0004g0052 a0001c0001t0004g0060 a0001c0001t0004g0062 a0001c0001t0004g0065 a0001c0001t0004g0067 a0001c0001t0004g0072 a0001c0001t0004g0074 a0001c0001t0004g0076 a0001c0001t0004g0092 a0001c0001t0006g0078 a0001c0001t0006g0080 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0006g0100 a0001c0001t0007g0097 a0001c0001t0010g0039 a0001c0001t0014g0048 a0001c0001t0015g0096 a0006c0011t0004g0059 a0011c0014t0004g0044 a0015c0017t0001g0004 a0016c0004t0007g0093	44	115	0.3826	-9	c.874 others(24): Show c.874+382_874+390delAGCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365637	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	115	0.0087	-9	c.874 others(24): Show c.874+391_874+399delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365655	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	115	0.0087	-9	c.874 others(24): Show c.874+409_874+417delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365742	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0021	1	115	0.0087	-9	c.874 others(24): Show c.874+499_874+507delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1365797	GCCGGGTG others(2): Show GCCGGGTGCC	G G	intron_variant intron_variant	MODIFIER	HG03471.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1 HG03471.hp2 NA18906.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0013 a0001c0001t0002 a0001c0001t0003 a0001c0001t0013	a0001c0001t0002g0069 a0001c0001t0003g0105 a0001c0001t0013g0091 a0001c0001t0002g0069 a0001c0001t0003g0105 a0001c0001t0013g0091	3	115	0.0261	-9	c.874 others(24): Show c.874+553_874+561delCCCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366110	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0048 a0001c0001t0014g0048	1	115	0.0087	-9	c.874 others(24): Show c.874+873_874+881delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366134	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02622.hp1 HG02886.hp2 HG02165.hp2 HG02622.hp1 HG02886.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0020 a0002c0002 a0001c0001 a0001c0020 a0002c0002	a0001c0001t0001 a0001c0020t0009 a0002c0002t0005 a0001c0001t0001 a0001c0020t0009 a0002c0002t0005	a0001c0001t0001g0012 a0001c0020t0009g0098 a0002c0002t0005g0008 a0001c0001t0001g0012 a0001c0020t0009g0098 a0002c0002t0005g0008	3	115	0.0261	-9	c.874 others(24): Show c.874+909_874+917delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366161	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA19012.hp1 NA18966.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0035 a0001c0001t0001g0018 a0001c0001t0001g0035	2	115	0.0174	-9	c.874 others(24): Show c.874+918_874+926delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366184	GGTGCGCG others(2): Show GGTGCGCGGC	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0057	1	115	0.0087	-9	c.874 others(24): Show c.874+936_874+944delCGCGGCGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366263	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0111	1	115	0.0087	-9	c.874 others(26): Show c.874+1026_874+1034delAGCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366278	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	115	0.0087	-9	c.874 others(26): Show c.874+1029_874+1037delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366281	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0060 a0001c0001t0004g0060	1	115	0.0087	-9	c.874 others(26): Show c.874+1035_874+1043delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366308	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG03710.hp1 NA19055.hp1 NA19056.hp2 HG03710.hp1 NA19055.hp1 NA19056.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0010 a0001c0001 a0007c0010	a0001c0001t0002 a0007c0010t0001 a0001c0001t0002 a0007c0010t0001	a0001c0001t0002g0042 a0001c0001t0002g0063 a0007c0010t0001g0007 a0001c0001t0002g0042 a0001c0001t0002g0063 a0007c0010t0001g0007	3	115	0.0261	-9	c.874 others(26): Show c.874+1071_874+1079delAGCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366323	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	115	0.0087	-9	c.874 others(26): Show c.874+1074_874+1082delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366344	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	115	0.0087	-9	c.874 others(26): Show c.874+1098_874+1106delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366377	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	115	0.0087	-9	c.874 others(26): Show c.874+1128_874+1136delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366404	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG02922.hp2 NA19056.hp2 HG01069.hp1 HG02922.hp2 NA19056.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0010 a0001c0001 a0007c0010	a0001c0001t0002 a0001c0001t0006 a0007c0010t0001 a0001c0001t0002 a0001c0001t0006 a0007c0010t0001	a0001c0001t0002g0057 a0001c0001t0006g0086 a0007c0010t0001g0007 a0001c0001t0002g0057 a0001c0001t0006g0086 a0007c0010t0001g0007	3	115	0.0261	-9	c.874 others(26): Show c.874+1161_874+1169delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366413	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02451.hp2 HG06807.hp1 HG01433.hp2 HG02451.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0104 a0001c0001t0003g0036 a0001c0001t0003g0107 a0001c0001t0001g0104 a0001c0001t0003g0036 a0001c0001t0003g0107	3	115	0.0261	-9	c.874 others(26): Show c.874+1170_874+1178delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366443	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0081 a0001c0001t0003g0081	1	115	0.0087	-9	c.874 others(26): Show c.874+1197_874+1205delAGCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366458	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01070.hp1 HG02922.hp2 HG01069.hp1 HG01070.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0057 a0001c0001t0006g0085 a0001c0001t0006g0086 a0001c0001t0002g0057 a0001c0001t0006g0085 a0001c0001t0006g0086	3	115	0.0261	-9	c.874 others(26): Show c.874+1227_874+1235delGGGGTGAGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366486	GCCGGGTG others(2): Show GCCGGGTGCC	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	115	0.0087	-9	c.874 others(26): Show c.874+1242_874+1250delCCCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366516	GGGTGAGC others(2): Show GGGTGAGCCC	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp1 NA20300.hp2 HG02451.hp2 HG02922.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0079 a0001c0001t0001g0104 a0001c0001t0003g0114 a0001c0001t0001g0079 a0001c0001t0001g0104 a0001c0001t0003g0114	3	115	0.0261	-9	c.874 others(26): Show c.874+1273_874+1281delCGGTGAGCC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366551	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0049 a0001c0001t0002g0049	1	115	0.0087	-9	c.874 others(26): Show c.874+1305_874+1313delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366560	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02922.hp1 HG06807.hp1 HG01433.hp2 HG02922.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0036 a0001c0001t0003g0107 a0001c0001t0003g0114 a0001c0001t0003g0036 a0001c0001t0003g0107 a0001c0001t0003g0114	3	115	0.0261	-9	c.874 others(26): Show c.874+1317_874+1325delCGGGTGAGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366627	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0066 a0001c0003t0004g0066	1	115	0.0087	-9	c.874 others(26): Show c.874+1378_874+1386delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366648	GGGGTGAG others(2): Show GGGGTGAGCC	G G	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0085 a0001c0001t0006g0085	1	115	0.0087	-9	c.874 others(26): Show c.874+1402_874+1410delAGCCGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366663	CCCCGGGT others(2): Show CCCCGGGTGA	C C	intron_variant intron_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0072 a0001c0001t0004g0072	1	115	0.0087	-9	c.874 others(26): Show c.874+1412_874+1420delCCCGGGTGA	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11		chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366693	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	NA19066.hp2 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0047 a0001c0001t0002g0047	1	115	0.0087	-9	c.874 others(26): Show c.874+1447_874+1455delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366713	GGTGCGCG others(2): Show GGTGCGCGGA	G G	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0023 a0001c0001t0003g0023	1	115	0.0087	-9	c.874 others(26): Show c.874+1465_874+1473delCGCGGAGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366740	GGTGCGCG others(2): Show GGTGCGCGGC	G G	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02451.hp2 HG00558.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0104 a0001c0001t0003g0023 a0001c0001t0001g0104 a0001c0001t0003g0023	2	115	0.0174	-9	c.874 others(26): Show c.874+1492_874+1500delCGCGGCGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366756	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG04228.hp2 NA18906.hp1 others(3): Show HG01256.hp2 HG04228.hp2 NA18906.hp1 NA18951.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0010	a0001c0001t0001g0079 a0001c0001t0001g0103 a0001c0001t0002g0069 others(3): Show a0001c0001t0001g0079 a0001c0001t0001g0103 a0001c0001t0002g0069 a0001c0001t0003g0009 a0001c0001t0003g0021 a0001c0001t0010g0039	6	115	0.0522	-9	c.874 others(26): Show c.874+1519_874+1527delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366771	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0076 a0001c0001t0004g0076	1	115	0.0087	-9	c.874 others(26): Show c.874+1528_874+1536delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366780	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02965.hp1 HG03239.hp1 others(1): Show HG02300.hp2 HG02965.hp1 HG03239.hp1 HG03490.hp2	a0001 a0011 a0001 a0011	a0001c0001 a0011c0014 a0001c0001 a0011c0014	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0011c0014t0004	a0001c0001t0001g0037 a0001c0001t0003g0014 a0001c0001t0006g0080 others(1): Show a0001c0001t0001g0037 a0001c0001t0003g0014 a0001c0001t0006g0080 a0011c0014t0004g0044	4	115	0.0348	-9	c.874 others(26): Show c.874+1555_874+1563delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366807	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0012 a0012	a0012c0007 a0012c0007	a0012c0007t0002 a0012c0007t0002	a0012c0007t0002g0045 a0012c0007t0002g0045	1	115	0.0087	-9	c.874 others(26): Show c.874+1564_874+1572delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366830	GGTGCGCG others(2): Show GGTGCGCGGC	G G	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02451.hp2 HG00558.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0104 a0001c0001t0003g0023 a0001c0001t0001g0104 a0001c0001t0003g0023	2	115	0.0174	-9	c.874 others(26): Show c.874+1582_874+1590delCGCGGCGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366852	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG02257.hp1 HG02280.hp2 others(6): Show HG01256.hp2 HG02257.hp1 HG02280.hp2 HG03453.hp2 NA18906.hp1 NA18951.hp1 NA18995.hp2 NA19080.hp1 homoSapiens_chm13v2.hp1	a0001 a0016 a0001 a0016	a0001c0001 a0016c0004 a0001c0001 a0016c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0016c0004t0007	a0001c0001t0001g0026 a0001c0001t0001g0103 a0001c0001t0002g0069 others(6): Show a0001c0001t0001g0026 a0001c0001t0001g0103 a0001c0001t0002g0069 a0001c0001t0003g0009 a0001c0001t0003g0113 a0001c0001t0004g0062 a0001c0001t0004g0074 a0001c0001t0010g0039 a0016c0004t0007g0093	9	115	0.0783	-9	c.874 others(26): Show c.874+1609_874+1617delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366870	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02145.hp2 HG01975.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0111 a0001c0001t0004g0052 a0001c0001t0001g0111 a0001c0001t0004g0052	2	115	0.0174	-9	c.874 others(26): Show c.874+1627_874+1635delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366879	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0094 a0001c0001t0003g0094	1	115	0.0087	-9	c.874 others(26): Show c.874+1636_874+1644delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366915	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 NA18948.hp1 NA18966.hp1 others(2): Show HG02886.hp2 NA18948.hp1 NA18966.hp1 NA19055.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0020 a0001c0001 a0001c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0020t0009	a0001c0001t0001g0035 a0001c0001t0002g0038 a0001c0001t0002g0042 others(2): Show a0001c0001t0001g0035 a0001c0001t0002g0038 a0001c0001t0002g0042 a0001c0001t0011g0013 a0001c0020t0009g0098	5	115	0.0435	-9	c.874 others(26): Show c.874+1672_874+1680delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366924	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	115	0.0087	-9	c.874 others(26): Show c.874+1675_874+1683delGGGGTGAGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366933	AGCCGGGT others(2): Show AGCCGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0086 a0001c0001t0006g0086	1	115	0.0087	-9	c.874 others(26): Show c.874+1684_874+1692delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366936	CGGGTGCG others(2): Show CGGGTGCGCG	C C	intron_variant intron_variant	MODIFIER	HG03942.hp1 NA20300.hp2 HG03942.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0079 a0001c0001t0002g0058 a0001c0001t0001g0079 a0001c0001t0002g0058	2	115	0.0174	-9	c.874 others(26): Show c.874+1711_874+1719delGGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366963	GGGGTGCG others(2): Show GGGGTGCGCC	G G	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02280.hp1 HG06807.hp2 HG00558.hp1 HG02280.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0023 a0001c0001t0003g0094 a0001c0001t0004g0060 a0001c0001t0003g0023 a0001c0001t0003g0094 a0001c0001t0004g0060	3	115	0.0261	-9	c.874 others(26): Show c.874+1720_874+1728delCGGGTGCGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1366996	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20300.hp2 NA20129.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0079 a0001c0001t0006g0078 a0001c0001t0001g0079 a0001c0001t0006g0078	2	115	0.0174	-9	c.874 others(26): Show c.874+1753_874+1761delAGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1367005	AGCGGGGT others(2): Show AGCGGGGTGC	A A	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG02451.hp2 NA18948.hp1 HG01358.hp1 HG02451.hp2 NA18948.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0002c0002t0005 a0001c0001t0001 a0001c0001t0002 a0002c0002t0005	a0001c0001t0001g0104 a0001c0001t0002g0038 a0002c0002t0005g0025 a0001c0001t0001g0104 a0001c0001t0002g0038 a0002c0002t0005g0025	3	115	0.0261	-9	c.874 others(26): Show c.874+1780_874+1788delCGCGGGGTG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1367050	CGCGGGGT others(2): Show CGCGGGGTGA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0114 a0001c0001t0003g0114	1	115	0.0087	-9	c.874 others(26): Show c.874+1810_874+1818delGGGGTGAGC	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11	INFO_REALIGN_3_PRIME	chrX	TogoVar

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