Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CDH12_chr5_21745673_22858344	22035706	T T	TCACACAC others(3): Show TCACACACACA	intron_variant intron_variant	MODIFIER	HG00639.hp1 NA21309.hp2 HG00639.hp1 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0002 a0001c0002t0004g0040 a0001c0002t0004g0002 a0001c0002t0004g0040	2	60	0.0333	10	c.231 others(29): Show c.231+42739_231+42740insTGTGTGTGTG	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	5/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22100652	G G	GACACACA others(3): Show GACACACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01361.hp2 HG02622.hp2 others(10): Show HG00639.hp1 HG01361.hp2 HG02622.hp2 HG02723.hp2 HG03130.hp2 HG03195.hp2 HG03471.hp1 HG03834.hp1 HG06807.hp1 NA19002.hp2 NA20129.hp1 NA20300.hp1 NA21309.hp2	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0008c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0002t0004 a0001c0002t0020 a0002c0003t0001 a0002c0003t0002 a0002c0003t0005 a0002c0004t0003 a0002c0004t0021 a0008c0014t0026	a0001c0001t0001g0047 a0001c0001t0002g0051 a0001c0001t0008g0044 others(10): Show a0001c0001t0001g0047 a0001c0001t0002g0051 a0001c0001t0008g0044 a0001c0002t0004g0002 a0001c0002t0004g0040 a0001c0002t0020g0057 a0002c0003t0001g0005 a0002c0003t0002g0011 a0002c0003t0002g0015 a0002c0003t0005g0060 a0002c0004t0003g0041 a0002c0004t0021g0013 a0008c0014t0026g0031	13	60	0.2167	10	c.-18 others(31): Show c.-186-21800_-186-21791dupGTGTGTGTGT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	4/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22138844	T T	TTATATAT others(3): Show TTATATATATA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02647.hp1 HG02258.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0016 a0001c0002t0024 a0001c0001t0016 a0001c0002t0024	a0001c0001t0016g0045 a0001c0002t0024g0007 a0001c0001t0016g0045 a0001c0002t0024g0007	2	60	0.0333	10	c.-18 others(31): Show c.-186-59983_-186-59982insTATATATATA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	4/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22138845	A A	AATATATA others(3): Show AATATATATAT	intron_variant intron_variant	MODIFIER	HG02896.hp1 NA18906.hp2 NA20129.hp1 HG02896.hp1 NA18906.hp2 NA20129.hp1	a0002 a0007 a0002 a0007	a0002c0004 a0002c0006 a0007c0012 a0002c0004 a0002c0006 a0007c0012	a0002c0004t0021 a0002c0006t0004 a0007c0012t0002 a0002c0004t0021 a0002c0006t0004 a0007c0012t0002	a0002c0004t0021g0013 a0002c0006t0004g0018 a0007c0012t0002g0048 a0002c0004t0021g0013 a0002c0006t0004g0018 a0007c0012t0002g0048	3	60	0.0500	10	c.-18 others(31): Show c.-186-59993_-186-59984dupATATATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	4/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22153884	A A	ATATATAT others(3): Show ATATATATATG	intron_variant intron_variant	MODIFIER	NA19002.hp1 NA19002.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0009 a0001c0002t0011g0009	1	60	0.0167	10	c.-18 others(31): Show c.-187+58613_-187+58614insCATATATATA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	4/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22220597	A A	AAAATGAA others(3): Show AAAATGAATAG	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01358.hp2 HG01361.hp2 others(13): Show HG01070.hp1 HG01358.hp2 HG01361.hp2 HG02258.hp1 HG02647.hp1 HG02723.hp2 HG02809.hp2 HG03195.hp2 HG03486.hp1 HG03579.hp2 HG03669.hp1 HG06807.hp1 NA18906.hp1 NA19002.hp1 NA20129.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0008 others(2): Show a0001c0001 a0001c0002 a0001c0008 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0008 a0001c0001t0013 others(11): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0013 a0001c0001t0016 a0001c0001t0018 a0001c0002t0004 a0001c0002t0011 a0001c0002t0015 a0001c0002t0020 a0001c0002t0024 a0001c0002t0027 a0001c0008t0002 a0002c0003t0001 a0002c0004t0003	a0001c0001t0001g0047 a0001c0001t0001g0050 a0001c0001t0008g0044 others(13): Show a0001c0001t0001g0047 a0001c0001t0001g0050 a0001c0001t0008g0044 a0001c0001t0013g0049 a0001c0001t0016g0045 a0001c0001t0018g0010 a0001c0002t0004g0008 a0001c0002t0011g0009 a0001c0002t0015g0032 a0001c0002t0020g0057 a0001c0002t0024g0007 a0001c0002t0027g0036 a0001c0008t0002g0039 a0002c0003t0001g0005 a0002c0004t0003g0023 a0002c0004t0003g0041	16	60	0.2667	10	c.-33 others(29): Show c.-332-7955_-332-7954insCTATTCATTT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22283251	T T	TATATATA others(3): Show TATATATACAC	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0049 a0001c0001t0013g0049	1	60	0.0167	10	c.-33 others(31): Show c.-332-70609_-332-70608insGTGTATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22283251	T T	TATATATA others(3): Show TATATATATAC	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0008 a0001c0002t0004g0008	1	60	0.0167	10	c.-33 others(31): Show c.-332-70609_-332-70608insGTATATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22315119	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02622.hp1 HG02572.hp1 HG02622.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0002c0004t0004 a0001c0001t0001 a0002c0004t0004	a0001c0001t0001g0003 a0002c0004t0004g0033 a0001c0001t0001g0003 a0002c0004t0004g0033	2	60	0.0333	10	c.-33 others(31): Show c.-333+90128_-333+90137dupAAAAAAAAAA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22343283	T T	TACACACA others(3): Show TACACACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG02280.hp2 HG02559.hp1 others(1): Show HG00639.hp1 HG02280.hp2 HG02559.hp1 HG02622.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0013 others(1): Show a0001c0001 a0001c0002 a0002c0013 a0003c0005	a0001c0001t0001 a0001c0002t0004 a0002c0013t0002 others(1): Show a0001c0001t0001 a0001c0002t0004 a0002c0013t0002 a0003c0005t0001	a0001c0001t0001g0003 a0001c0002t0004g0040 a0002c0013t0002g0034 others(1): Show a0001c0001t0001g0003 a0001c0002t0004g0040 a0002c0013t0002g0034 a0003c0005t0001g0056	4	60	0.0667	10	c.-33 others(31): Show c.-333+61964_-333+61973dupGTGTGTGTGT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22343301	C C	CACACACA others(3): Show CACACACACAG	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0058 a0002c0003t0001g0058	1	60	0.0167	10	c.-33 others(31): Show c.-333+61955_-333+61956insCTGTGTGTGT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22343323	C C	CAGAGAGA others(3): Show CAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	60	0.0167	10	c.-33 others(31): Show c.-333+61924_-333+61933dupCTCTCTCTCT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22390014	T T	TACACACA others(3): Show TACACACACAC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02809.hp1 HG02559.hp2 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0023 a0001c0001t0002 a0001c0002t0023	a0001c0001t0002g0035 a0001c0002t0023g0046 a0001c0001t0002g0035 a0001c0002t0023g0046	2	60	0.0333	10	c.-33 others(31): Show c.-333+15233_-333+15242dupGTGTGTGTGT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	3/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22429102	C C	CTATTTTA others(3): Show CTATTTTATTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG03195.hp2 HG02886.hp2 HG03195.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0047 a0002c0003t0001g0053 a0001c0001t0001g0047 a0002c0003t0001g0053	2	60	0.0333	10	c.-42 others(31): Show c.-427-23761_-427-23752dupAAATAAAATA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22435498	A A	ATGTGTGT others(3): Show ATGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0044 a0001c0001t0008g0044	1	60	0.0167	10	c.-42 others(31): Show c.-427-30157_-427-30148dupCACACACACA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22435524	G G	GTGTGTAT others(3): Show GTGTGTATATA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0033 a0002c0004t0004g0033	1	60	0.0167	10	c.-42 others(31): Show c.-427-30174_-427-30173insTATATACACA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22452880	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0003 a0002c0004t0003	a0002c0004t0003g0041 a0002c0004t0003g0041	1	60	0.0167	10	c.-42 others(31): Show c.-427-47539_-427-47530dupTTTTTTTTTT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22460713	A A	ATTTTTTT others(3): Show ATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0012 a0001c0001t0010g0012	1	60	0.0167	10	c.-42 others(31): Show c.-428+44547_-428+44556dupAAAAAAAAAA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22489056	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0012 a0002c0004t0012	a0002c0004t0012g0020 a0002c0004t0012g0020	1	60	0.0167	10	c.-42 others(31): Show c.-428+16204_-428+16213dupAAAAAAAAAA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	2/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22532350	G G	GATATATA others(3): Show GATATATATAT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0024 a0001c0001t0009g0024	1	60	0.0167	10	c.-52 others(31): Show c.-522-26996_-522-26987dupATATATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22586490	A A	AATATATA others(3): Show AATATATATAT	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	60	0.0167	10	c.-52 others(31): Show c.-522-81136_-522-81127dupATATATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22622280	A A	ACATCCCC others(3): Show ACATCCCCTAC	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0033 a0002c0004t0004g0033	1	60	0.0167	10	c.-52 others(33): Show c.-522-116917_-522-116916insGTAGGGGATG	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22639050	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0053 a0002c0003t0001g0053	1	60	0.0167	10	c.-52 others(33): Show c.-522-133696_-522-133687dupTTTTTTTTTT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22643733	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0033 a0002c0004t0004g0033	1	60	0.0167	10	c.-52 others(33): Show c.-522-138379_-522-138370dupAAAAAAAAAA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22681226	G G	GGTGTGTG others(3): Show GGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01358.hp1 NA18906.hp1 HG01358.hp1 NA18906.hp1	a0001 a0006 a0001 a0006	a0001c0002 a0006c0009 a0001c0002 a0006c0009	a0001c0002t0004 a0006c0009t0001 a0001c0002t0004 a0006c0009t0001	a0001c0002t0004g0008 a0006c0009t0001g0006 a0001c0002t0004g0008 a0006c0009t0001g0006	2	60	0.0333	10	c.-52 others(33): Show c.-523+171831_-523+171832insACACACACAC	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22705130	T T	TATATACA others(3): Show TATATACACAC	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0001 a0001c0002t0007g0001	1	60	0.0167	10	c.-52 others(33): Show c.-523+147927_-523+147928insGTGTGTATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22705130	T T	TATATATA others(3): Show TATATATACAC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02809.hp2 HG02886.hp1 others(4): Show HG02559.hp2 HG02809.hp2 HG02886.hp1 HG03130.hp2 HG03209.hp2 NA19002.hp1 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0002t0011 a0002c0004t0003	a0001c0001t0001g0027 a0001c0001t0001g0050 a0001c0001t0002g0035 others(4): Show a0001c0001t0001g0027 a0001c0001t0001g0050 a0001c0001t0002g0035 a0001c0001t0002g0051 a0001c0002t0003g0052 a0001c0002t0011g0009 a0002c0004t0003g0041	7	60	0.1167	10	c.-52 others(33): Show c.-523+147927_-523+147928insGTGTATATAT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22705499	G G	GCACACAC others(3): Show GCACACACACA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01361.hp1 HG02559.hp2 others(6): Show HG00558.hp1 HG01361.hp1 HG02559.hp2 HG02647.hp1 HG03471.hp1 HG03669.hp1 NA19002.hp1 NA20300.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004	a0001c0001t0002 a0001c0001t0016 a0001c0002t0004 others(6): Show a0001c0001t0002 a0001c0001t0016 a0001c0002t0004 a0001c0002t0007 a0001c0002t0011 a0001c0002t0027 a0002c0003t0005 a0002c0004t0003 a0002c0004t0006	a0001c0001t0002g0035 a0001c0001t0016g0045 a0001c0002t0004g0002 others(6): Show a0001c0001t0002g0035 a0001c0001t0016g0045 a0001c0002t0004g0002 a0001c0002t0007g0001 a0001c0002t0011g0009 a0001c0002t0027g0036 a0002c0003t0005g0060 a0002c0004t0003g0041 a0002c0004t0006g0037	9	60	0.1500	10	c.-52 others(33): Show c.-523+147549_-523+147558dupTGTGTGTGTG	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22831371	C C	CTGTGTGT others(3): Show CTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0011 a0002c0003t0002g0011	1	60	0.0167	10	c.-52 others(31): Show c.-523+21677_-523+21686dupCACACACACA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22836217	C C	CTCTTTTT others(3): Show CTCTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0022 a0001c0002t0003g0022	1	60	0.0167	10	c.-52 others(31): Show c.-523+16840_-523+16841insAAAAAAAAGA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH12_chr5_21745673_22858344	22836223	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01361.hp1 HG02622.hp2 HG00558.hp2 HG01361.hp1 HG02622.hp2	a0002 a0009 a0002 a0009	a0002c0003 a0002c0004 a0009c0007 a0002c0003 a0002c0004 a0009c0007	a0002c0003t0002 a0002c0004t0006 a0009c0007t0028 a0002c0003t0002 a0002c0004t0006 a0009c0007t0028	a0002c0003t0002g0011 a0002c0004t0006g0037 a0009c0007t0028g0059 a0002c0003t0002g0011 a0002c0004t0006g0037 a0009c0007t0028g0059	3	60	0.0500	10	c.-52 others(31): Show c.-523+16825_-523+16834dupAAAAAAAAAA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14		chr5	TogoVar
CDH13_chr16_82621969_83805640	82627337	C C	CGTGCGTG others(3): Show CGTGCGTGTGT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01258.hp1 HG01261.hp2 others(3): Show HG01168.hp1 HG01258.hp1 HG01261.hp2 HG02622.hp2 HG02895.hp1 HG03669.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0005 others(1): Show a0001c0001 a0001c0004 a0001c0005 a0002c0012	a0001c0001t0002 a0001c0001t0024 a0001c0004t0003 others(3): Show a0001c0001t0002 a0001c0001t0024 a0001c0004t0003 a0001c0005t0005 a0001c0005t0039 a0002c0012t0002	a0001c0001t0002g0016 a0001c0001t0024g0018 a0001c0004t0003g0020 others(3): Show a0001c0001t0002g0016 a0001c0001t0024g0018 a0001c0004t0003g0020 a0001c0005t0005g0015 a0001c0005t0039g0017 a0002c0012t0002g0019	6	110	0.0546	10	c.45+ others(23): Show c.45+203_45+204insCGTGTGTGTG	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82627337	C C	CGTGTGTG others(3): Show CGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01167.hp1 HG02027.hp1 others(1): Show HG00597.hp1 HG01167.hp1 HG02027.hp1 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0002t0012 a0001c0004t0003 others(1): Show a0001c0001t0001 a0001c0002t0012 a0001c0004t0003 a0001c0004t0030	a0001c0001t0001g0104 a0001c0002t0012g0105 a0001c0004t0003g0103 others(1): Show a0001c0001t0001g0104 a0001c0002t0012g0105 a0001c0004t0003g0103 a0001c0004t0030g0102	4	110	0.0364	10	c.45+ others(23): Show c.45+235_45+244dupGTGTGTGTGT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82637428	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01081.hp1 HG01257.hp1 others(10): Show HG00597.hp2 HG01081.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG02027.hp2 HG02895.hp1 HG03239.hp2 HG03669.hp1 HG03942.hp1 NA19240.hp2 NA20129.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0024 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0024 a0001c0002t0002 a0001c0002t0021 a0001c0002t0038 a0001c0003t0004 a0001c0004t0003 a0001c0005t0005 a0001c0006t0031	a0001c0001t0001g0029 a0001c0001t0002g0007 a0001c0001t0002g0016 others(10): Show a0001c0001t0001g0029 a0001c0001t0002g0007 a0001c0001t0002g0016 a0001c0001t0002g0028 a0001c0001t0002g0045 a0001c0001t0024g0018 a0001c0002t0002g0043 a0001c0002t0021g0008 a0001c0002t0038g0023 a0001c0003t0004g0003 a0001c0004t0003g0020 a0001c0005t0005g0015 a0001c0006t0031g0005	13	110	0.1182	10	c.45+ others(27): Show c.45+10302_45+10311dupTTTTTTTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82676871	T T	TTTTTGTT others(3): Show TTTTTGTTTTG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00642.hp1 HG00738.hp1 others(13): Show HG00639.hp2 HG00642.hp1 HG00738.hp1 HG01168.hp2 HG01169.hp1 HG01255.hp1 HG01255.hp2 HG01257.hp2 HG01258.hp2 HG02257.hp2 HG02698.hp1 HG02698.hp2 HG03239.hp2 HG03942.hp2 NA19043.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 others(8): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 a0001c0003t0004 a0001c0003t0043 a0001c0004t0003 a0001c0004t0016 a0001c0004t0042	a0001c0001t0002g0007 a0001c0001t0002g0046 a0001c0001t0003g0042 others(13): Show a0001c0001t0002g0007 a0001c0001t0002g0046 a0001c0001t0003g0042 a0001c0001t0003g0085 a0001c0001t0003g0086 a0001c0002t0001g0025 a0001c0002t0001g0059 a0001c0002t0001g0097 a0001c0002t0002g0032 a0001c0002t0005g0101 a0001c0002t0007g0100 a0001c0003t0004g0003 a0001c0003t0043g0094 a0001c0004t0003g0096 a0001c0004t0016g0056 a0001c0004t0042g0061	16	110	0.1455	10	c.45+ others(27): Show c.45+49754_45+49763dupGTTTTGTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82676895	T T	TGTTTTGT others(3): Show TGTTTTGTTTC	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0072 a0001c0001t0018g0072	1	110	0.0091	10	c.45+ others(27): Show c.45+49763_45+49764insGTTTCGTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82689982	T T	TAAAAAAA others(3): Show TAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02622.hp1 HG02717.hp2 others(7): Show HG02451.hp1 HG02622.hp1 HG02717.hp2 HG02896.hp2 HG02965.hp2 HG03098.hp2 HG03209.hp2 HG03453.hp1 HG03516.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0019 a0001c0001t0033 a0001c0002t0014 a0001c0003t0004 a0001c0005t0014 a0001c0006t0031	a0001c0001t0001g0087 a0001c0001t0002g0089 a0001c0001t0008g0052 others(7): Show a0001c0001t0001g0087 a0001c0001t0002g0089 a0001c0001t0008g0052 a0001c0001t0008g0067 a0001c0001t0019g0068 a0001c0001t0033g0049 a0001c0002t0014g0109 a0001c0003t0004g0110 a0001c0005t0014g0040 a0001c0006t0031g0005	10	110	0.0909	10	c.45+ others(27): Show c.45+62872_45+62881dupAAAAAAAAAA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82710552	A A	AATATATA others(3): Show AATATATATAT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0047 a0001c0001t0009g0047	1	110	0.0091	10	c.45+ others(27): Show c.45+83431_45+83440dupTATATATATA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82710591	A A	AAATATAT others(3): Show AAATATATTTC	intron_variant intron_variant	MODIFIER	HG03669.hp2 NA20129.hp1 HG03669.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0022 a0001c0001t0001 a0001c0002t0022	a0001c0001t0001g0104 a0001c0002t0022g0031 a0001c0001t0001g0104 a0001c0002t0022g0031	2	110	0.0182	10	c.45+ others(27): Show c.45+83454_45+83455insAATATATTTC	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13		chr16	TogoVar
CDH13_chr16_82621969_83805640	82761017	C C	CTTTCTTT others(3): Show CTTTCTTTTTT	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03139.hp1 HG02922.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0002t0015 a0001c0001t0005 a0001c0002t0015	a0001c0001t0005g0054 a0001c0002t0015g0039 a0001c0001t0005g0054 a0001c0002t0015g0039	2	110	0.0182	10	c.46- others(27): Show c.46-97342_46-97341insCTTTTTTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82761017	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02717.hp1 HG02717.hp2 others(3): Show HG02451.hp1 HG02717.hp1 HG02717.hp2 HG03471.hp2 HG03486.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0037 a0001c0002t0010 a0001c0002t0013	a0001c0001t0001g0087 a0001c0001t0002g0089 a0001c0001t0008g0066 others(3): Show a0001c0001t0001g0087 a0001c0001t0002g0089 a0001c0001t0008g0066 a0001c0001t0037g0022 a0001c0002t0010g0036 a0001c0002t0013g0092	6	110	0.0546	10	c.46- others(27): Show c.46-97325_46-97316dupTTTTTTTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82797774	C C	CGTGTGTG others(3): Show CGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0030 a0001c0002t0001g0030	1	110	0.0091	10	c.46- others(27): Show c.46-60563_46-60554dupGTGTGTGTGT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82804276	T T	TACACACA others(3): Show TACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA18522.hp1 NA21309.hp2 HG02630.hp1 NA18522.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0028 a0001c0002t0038 a0001c0008t0015 a0001c0001t0028 a0001c0002t0038 a0001c0008t0015	a0001c0001t0028g0038 a0001c0002t0038g0023 a0001c0008t0015g0048 a0001c0001t0028g0038 a0001c0002t0038g0023 a0001c0008t0015g0048	3	110	0.0273	10	c.46- others(27): Show c.46-54059_46-54050dupACACACACAC	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82842149	T T	TATATACA others(3): Show TATATACATAC	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0036 a0001c0002t0010g0036	1	110	0.0091	10	c.46- others(27): Show c.46-16208_46-16207insCATACATATA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82877924	G G	GACACACA others(3): Show GACACACACAC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02717.hp2 HG02965.hp2 others(2): Show HG02055.hp1 HG02717.hp2 HG02965.hp2 HG03486.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0019 a0001c0001t0037 others(2): Show a0001c0001t0002 a0001c0001t0019 a0001c0001t0037 a0001c0002t0038 a0001c0002t0041	a0001c0001t0002g0089 a0001c0001t0019g0068 a0001c0001t0037g0022 others(2): Show a0001c0001t0002g0089 a0001c0001t0019g0068 a0001c0001t0037g0022 a0001c0002t0038g0023 a0001c0002t0041g0079	5	110	0.0455	10	c.157 others(29): Show c.157+19479_157+19488dupCACACACACA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82889300	A A	ATCTCTCT others(3): Show ATCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0005 a0001c0005t0005	a0001c0005t0005g0015 a0001c0005t0005g0015	1	110	0.0091	10	c.157 others(29): Show c.157+30841_157+30850dupCTCTCTCTCT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82896276	A A	ATTTTTTT others(3): Show ATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02055.hp1 HG02895.hp1 others(5): Show HG02027.hp2 HG02055.hp1 HG02895.hp1 HG02922.hp1 HG03471.hp1 NA18522.hp1 NA19240.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0014	a0001c0001t0001 a0001c0001t0028 a0001c0002t0009 others(4): Show a0001c0001t0001 a0001c0001t0028 a0001c0002t0009 a0001c0002t0041 a0001c0005t0005 a0001c0006t0031 a0001c0014t0046	a0001c0001t0001g0029 a0001c0001t0001g0053 a0001c0001t0028g0038 others(5): Show a0001c0001t0001g0029 a0001c0001t0001g0053 a0001c0001t0028g0038 a0001c0002t0009g0075 a0001c0002t0041g0079 a0001c0005t0005g0015 a0001c0006t0031g0005 a0001c0014t0046g0013	8	110	0.0727	10	c.157 others(29): Show c.157+37827_157+37836dupTTTTTTTTTT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82901324	C C	CTGTGTGT others(3): Show CTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0018 a0001c0001t0024g0018	1	110	0.0091	10	c.157 others(29): Show c.157+42885_157+42894dupGTGTGTGTGT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82909252	A A	ATGTGTGT others(3): Show ATGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01257.hp1 HG03017.hp1 others(1): Show HG00323.hp1 HG01257.hp1 HG03017.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0045 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0045 a0001c0002t0020	a0001c0001t0001g0095 a0001c0001t0002g0045 a0001c0001t0045g0065 others(1): Show a0001c0001t0001g0095 a0001c0001t0002g0045 a0001c0001t0045g0065 a0001c0002t0020g0099	4	110	0.0364	10	c.157 others(29): Show c.157+50811_157+50820dupGTGTGTGTGT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	82917914	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02055.hp1 HG03041.hp2 others(3): Show HG01167.hp1 HG02055.hp1 HG03041.hp2 HG03195.hp1 HG03516.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006	a0001c0001t0002 a0001c0001t0003 a0001c0002t0012 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0012 a0001c0002t0041 a0001c0005t0047 a0001c0006t0006	a0001c0001t0002g0076 a0001c0001t0003g0035 a0001c0002t0012g0105 others(3): Show a0001c0001t0002g0076 a0001c0001t0003g0035 a0001c0002t0012g0105 a0001c0002t0041g0079 a0001c0005t0047g0078 a0001c0006t0006g0069	6	110	0.0546	10	c.157 others(29): Show c.157+59450_157+59459dupAAAAAAAAAA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13	INFO_REALIGN_3_PRIME	chr16	TogoVar

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