Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
APBB2_chr4_40805027_41219542	40845974	G G	GGTAGGTG others(3): Show GGTAGGTGGGT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02965.hp1 HG02976.hp2 others(4): Show HG02630.hp2 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0001 a0002c0005 a0001c0003 a0002c0001 a0002c0005	a0001c0003t0005 a0001c0003t0006 a0002c0001t0005 others(1): Show a0001c0003t0005 a0001c0003t0006 a0002c0001t0005 a0002c0005t0005	a0001c0003t0005g0130 a0001c0003t0006g0134 a0002c0001t0005g0152 others(4): Show a0001c0003t0005g0130 a0001c0003t0006g0134 a0002c0001t0005g0152 a0002c0001t0005g0153 a0002c0001t0005g0167 a0002c0001t0005g0189 a0002c0005t0005g0076	7	192	0.0365	10	c.153 others(31): Show c.1530-15407_1530-15398dupACCCACCTAC	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	12/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40864256	A A	AAAAACAA others(3): Show AAAAACAAAAC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00438.hp2 others(35): Show HG00140.hp1 HG00140.hp2 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00642.hp2 HG00733.hp1 HG00735.hp2 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01106.hp2 HG01169.hp1 HG01261.hp1 HG01361.hp1 HG01517.hp2 HG01981.hp1 HG01993.hp1 HG02559.hp2 HG02738.hp2 HG02818.hp1 HG02922.hp2 HG03098.hp1 HG03453.hp1 HG03516.hp2 NA18747.hp1 NA18944.hp1 NA18944.hp2 NA18951.hp2 NA18955.hp1 NA18960.hp2 NA18970.hp2 NA19007.hp2 NA19030.hp1 NA19056.hp1 NA19065.hp2 NA20129.hp1 NA21309.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0001c0003 a0001c0004 others(3): Show a0001c0002 a0001c0003 a0001c0004 a0002c0001 a0002c0005 a0004c0007	a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 others(22): Show a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0022 a0001c0003t0001 a0001c0003t0004 a0001c0003t0010 a0001c0003t0013 a0001c0003t0032 a0001c0003t0055 a0001c0004t0003 a0001c0004t0004 a0001c0004t0005 a0001c0004t0006 a0001c0004t0013 a0001c0004t0020 a0001c0004t0039 a0002c0001t0001 a0002c0001t0004 a0002c0001t0008 a0002c0001t0013 a0002c0001t0022 a0002c0001t0056 a0002c0005t0008 a0004c0007t0007	a0001c0002t0001g0099 a0001c0002t0001g0109 a0001c0002t0001g0137 others(35): Show a0001c0002t0001g0099 a0001c0002t0001g0109 a0001c0002t0001g0137 a0001c0002t0003g0174 a0001c0002t0003g0183 a0001c0002t0004g0028 a0001c0002t0004g0108 a0001c0002t0022g0031 a0001c0003t0001g0029 a0001c0003t0001g0049 a0001c0003t0001g0185 a0001c0003t0004g0139 a0001c0003t0010g0007 a0001c0003t0013g0024 a0001c0003t0032g0008 a0001c0003t0055g0080 a0001c0004t0003g0103 a0001c0004t0004g0045 a0001c0004t0004g0129 a0001c0004t0004g0140 a0001c0004t0005g0163 a0001c0004t0006g0160 a0001c0004t0013g0022 a0001c0004t0020g0036 a0001c0004t0039g0180 a0002c0001t0001g0032 a0002c0001t0001g0037 a0002c0001t0001g0059 a0002c0001t0004g0102 a0002c0001t0004g0191 a0002c0001t0008g0041 a0002c0001t0008g0079 a0002c0001t0013g0023 a0002c0001t0022g0091 a0002c0001t0056g0157 a0002c0005t0008g0127 a0002c0005t0008g0176 a0004c0007t0007g0056	38	192	0.1979	10	c.152 others(31): Show c.1529+26098_1529+26107dupGTTTTGTTTT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	12/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40881528	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0009 a0001c0002t0011g0009	1	192	0.0052	10	c.152 others(29): Show c.1529+8835_1529+8836insAAAAAAAAAA	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	12/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40898880	C C	CACACACA others(3): Show CACACACACAG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01071.hp2 HG01106.hp1 others(8): Show HG00735.hp1 HG01071.hp2 HG01106.hp1 HG01109.hp1 HG01358.hp2 HG01981.hp2 NA18951.hp2 NA18955.hp1 NA18983.hp2 NA19043.hp1 NA19068.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0001 a0001c0002t0021 a0001c0003t0001 others(5): Show a0001c0002t0001 a0001c0002t0021 a0001c0003t0001 a0001c0003t0014 a0002c0001t0001 a0002c0001t0002 a0002c0001t0007 a0002c0001t0037	a0001c0002t0001g0137 a0001c0002t0001g0173 a0001c0002t0021g0083 others(8): Show a0001c0002t0001g0137 a0001c0002t0001g0173 a0001c0002t0021g0083 a0001c0003t0001g0029 a0001c0003t0014g0068 a0002c0001t0001g0032 a0002c0001t0001g0037 a0002c0001t0001g0078 a0002c0001t0002g0035 a0002c0001t0007g0177 a0002c0001t0037g0126	11	192	0.0573	10	c.125 others(29): Show c.1255-5470_1255-5469insCTGTGTGTGT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	10/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40946254	A A	AAAAAAAA others(3): Show AAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02258.hp2 HG02630.hp2 others(5): Show HG02257.hp2 HG02258.hp2 HG02630.hp2 HG02922.hp2 HG03098.hp1 HG03453.hp2 HG03516.hp2 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0004 a0002c0001 a0002c0005 a0001c0004 a0002c0001 a0002c0005	a0001c0004t0005 a0002c0001t0003 a0002c0001t0006 others(5): Show a0001c0004t0005 a0002c0001t0003 a0002c0001t0006 a0002c0001t0009 a0002c0001t0056 a0002c0005t0005 a0002c0005t0008 a0002c0005t0023	a0001c0004t0005g0163 a0002c0001t0003g0027 a0002c0001t0006g0168 others(5): Show a0001c0004t0005g0163 a0002c0001t0003g0027 a0002c0001t0006g0168 a0002c0001t0009g0186 a0002c0001t0056g0157 a0002c0005t0005g0076 a0002c0005t0008g0127 a0002c0005t0023g0165	8	192	0.0417	10	c.836 others(27): Show c.836-1182_836-1181insGTTTTTTTTT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40964753	A A	AACACACA others(3): Show AACACACACAC	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01255.hp2 HG02257.hp2 others(14): Show HG01099.hp2 HG01255.hp2 HG02257.hp2 HG02258.hp2 HG02559.hp2 HG02622.hp2 HG02809.hp1 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG03098.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 NA18522.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0004 a0002c0001 a0001c0004 a0002c0001	a0001c0004t0004 a0001c0004t0005 a0001c0004t0006 others(12): Show a0001c0004t0004 a0001c0004t0005 a0001c0004t0006 a0001c0004t0051 a0002c0001t0001 a0002c0001t0003 a0002c0001t0006 a0002c0001t0008 a0002c0001t0009 a0002c0001t0022 a0002c0001t0029 a0002c0001t0031 a0002c0001t0036 a0002c0001t0053 a0002c0001t0056	a0001c0004t0004g0144 a0001c0004t0005g0163 a0001c0004t0006g0160 others(14): Show a0001c0004t0004g0144 a0001c0004t0005g0163 a0001c0004t0006g0160 a0001c0004t0051g0141 a0002c0001t0001g0117 a0002c0001t0003g0027 a0002c0001t0003g0147 a0002c0001t0006g0115 a0002c0001t0006g0168 a0002c0001t0008g0156 a0002c0001t0009g0186 a0002c0001t0022g0091 a0002c0001t0029g0002 a0002c0001t0031g0017 a0002c0001t0036g0113 a0002c0001t0053g0143 a0002c0001t0056g0157	17	192	0.0885	10	c.836 others(29): Show c.836-19690_836-19681dupGTGTGTGTGT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40975753	A A	AACACACA others(3): Show AACACACACAC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00735.hp1 others(10): Show HG00140.hp1 HG00280.hp1 HG00735.hp1 HG01175.hp1 HG01261.hp1 HG02559.hp1 HG02622.hp1 HG02698.hp2 HG03492.hp2 HG03540.hp1 HG03540.hp2 NA19007.hp2 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0004 a0002c0001 a0001c0002 a0001c0004 a0002c0001	a0001c0002t0017 a0001c0004t0004 a0002c0001t0001 others(5): Show a0001c0002t0017 a0001c0004t0004 a0002c0001t0001 a0002c0001t0003 a0002c0001t0004 a0002c0001t0006 a0002c0001t0007 a0002c0001t0047	a0001c0002t0017g0094 a0001c0004t0004g0045 a0001c0004t0004g0046 others(10): Show a0001c0002t0017g0094 a0001c0004t0004g0045 a0001c0004t0004g0046 a0001c0004t0004g0047 a0002c0001t0001g0059 a0002c0001t0001g0117 a0002c0001t0001g0148 a0002c0001t0003g0151 a0002c0001t0004g0102 a0002c0001t0004g0132 a0002c0001t0006g0146 a0002c0001t0007g0177 a0002c0001t0047g0057	13	192	0.0677	10	c.836 others(29): Show c.836-30690_836-30681dupGTGTGTGTGT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40982230	G G	GAAAAGAA others(3): Show GAAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0008 a0002c0001t0008	a0002c0001t0008g0041 a0002c0001t0008g0041	1	192	0.0052	10	c.835 others(29): Show c.835+31352_835+31353insTCTTTCTTTT	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40991010	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00558.hp2 HG00642.hp2 others(17): Show HG00544.hp1 HG00558.hp2 HG00642.hp2 HG01071.hp2 HG01975.hp2 HG01993.hp2 HG02004.hp2 HG02165.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp2 HG02922.hp1 HG02922.hp2 HG03139.hp2 HG03453.hp2 HG03710.hp2 HG06807.hp1 NA18747.hp2 NA18990.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0002c0005 a0001c0003 a0002c0005	a0001c0003t0001 a0001c0003t0002 a0001c0003t0007 others(7): Show a0001c0003t0001 a0001c0003t0002 a0001c0003t0007 a0001c0003t0012 a0002c0005t0001 a0002c0005t0006 a0002c0005t0008 a0002c0005t0023 a0002c0005t0028 a0002c0005t0041	a0001c0003t0001g0029 a0001c0003t0001g0042 a0001c0003t0001g0049 others(17): Show a0001c0003t0001g0029 a0001c0003t0001g0042 a0001c0003t0001g0049 a0001c0003t0001g0050 a0001c0003t0001g0052 a0001c0003t0001g0053 a0001c0003t0001g0054 a0001c0003t0001g0055 a0001c0003t0001g0185 a0001c0003t0002g0072 a0001c0003t0007g0105 a0001c0003t0012g0011 a0002c0005t0001g0100 a0002c0005t0001g0149 a0002c0005t0001g0155 a0002c0005t0006g0187 a0002c0005t0008g0127 a0002c0005t0023g0165 a0002c0005t0028g0012 a0002c0005t0041g0124	20	192	0.1042	10	c.835 others(29): Show c.835+22572_835+22573insAAAAAAAAAA	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	41000069	A A	ATGTGTGT others(3): Show ATGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18960.hp2 NA18960.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0039 a0001c0004t0039	a0001c0004t0039g0180 a0001c0004t0039g0180	1	192	0.0052	10	c.835 others(29): Show c.835+13504_835+13513dupCACACACACA	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	41000105	G G	GTGTGTGT others(3): Show GTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG04204.hp1 NA18944.hp1 others(2): Show HG01346.hp1 HG04204.hp1 NA18944.hp1 NA18955.hp2 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0101 a0001c0002t0001g0109 a0001c0002t0002g0061 others(2): Show a0001c0002t0001g0101 a0001c0002t0001g0109 a0001c0002t0002g0061 a0001c0002t0002g0071 a0001c0002t0002g0122	5	192	0.0260	10	c.835 others(29): Show c.835+13477_835+13478insTACACACACA	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	41033584	T T	TCACACAC others(3): Show TCACACACACA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00544.hp2 HG00642.hp2 others(14): Show HG00438.hp1 HG00544.hp2 HG00642.hp2 HG01071.hp2 HG01243.hp2 HG01993.hp1 HG02004.hp2 HG02015.hp2 HG02257.hp1 HG02486.hp2 HG03098.hp1 HG03704.hp1 NA18993.hp1 NA19030.hp1 NA19087.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0003 a0001c0004 a0004c0007 a0001c0003 a0001c0004 a0004c0007	a0001c0003t0001 a0001c0003t0007 a0001c0004t0001 others(7): Show a0001c0003t0001 a0001c0003t0007 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0005 a0001c0004t0006 a0001c0004t0020 a0001c0004t0021 a0004c0007t0007	a0001c0003t0001g0029 a0001c0003t0001g0049 a0001c0003t0001g0050 others(14): Show a0001c0003t0001g0029 a0001c0003t0001g0049 a0001c0003t0001g0050 a0001c0003t0001g0164 a0001c0003t0007g0105 a0001c0004t0001g0121 a0001c0004t0001g0181 a0001c0004t0002g0112 a0001c0004t0002g0116 a0001c0004t0002g0192 a0001c0004t0003g0103 a0001c0004t0003g0111 a0001c0004t0005g0163 a0001c0004t0006g0160 a0001c0004t0020g0161 a0001c0004t0021g0092 a0004c0007t0007g0056	17	192	0.0885	10	c.-50 others(25): Show c.-50-290_-50-281dupTGTGTGTGTG	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	4/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	41033584	T T	TCTCACAC others(3): Show TCTCACACACA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01981.hp1 HG01175.hp2 HG01981.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0019 a0001c0004t0004 a0001c0004t0019	a0001c0004t0004g0129 a0001c0004t0019g0073 a0001c0004t0004g0129 a0001c0004t0019g0073	2	192	0.0104	10	c.-50 others(25): Show c.-50-281_-50-280insTGTGTGTGAG	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	4/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	41216419	C C	CGGGGGGG others(3): Show CGGGGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01516.hp2 HG01516.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0003 a0002c0001t0003	a0002c0001t0003g0048 a0002c0001t0003g0048	1	192	0.0052	10	c.-24 others(21): Show c.-2441_-2432dupCCCCCCCCCC	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding		1878		chr4	TogoVar
APC2_chr19_1445121_1478244	1457895	C C	CGGGGGGC others(3): Show CGGGGGGCGGG	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03239.hp2 HG03017.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0083 a0001c0001t0001g0142 a0001c0001t0001g0083 a0001c0001t0001g0142	2	350	0.0057	10	c.120 others(25): Show c.1208-67_1208-66insGGGCGGGGGG	APC2	ENSG00000115266.12	transcript	ENST00000590469.6	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr19	TogoVar
APC2_chr19_1445121_1478244	1457895	C C	CGGGGGGG others(3): Show CGGGGGGGGGG	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(69): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00642.hp2 HG00741.hp1 HG01071.hp1 HG01099.hp2 HG01168.hp2 HG01169.hp2 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01433.hp2 HG01516.hp1 HG01928.hp1 HG01934.hp1 HG02015.hp1 HG02015.hp2 HG02055.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02523.hp2 HG02602.hp2 HG02630.hp2 HG02922.hp1 HG03017.hp1 HG03098.hp1 HG03195.hp1 HG03453.hp1 HG03516.hp1 HG03669.hp2 HG03704.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG06807.hp2 NA18522.hp2 NA18747.hp1 NA18941.hp2 NA18944.hp1 NA18945.hp2 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp2 NA18951.hp1 NA18952.hp1 NA18954.hp1 NA18959.hp2 NA18965.hp2 NA18967.hp2 NA18969.hp2 NA18975.hp1 NA18982.hp1 NA18985.hp1 NA18995.hp2 NA18998.hp1 NA19005.hp2 NA19011.hp1 NA19063.hp2 NA19091.hp2 NA20805.hp2 NA20905.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0007 a0017 a0023 a0028 a0032	a0001c0001 a0001c0003 a0001c0005 others(12): Show a0001c0001 a0001c0003 a0001c0005 a0001c0008 a0001c0022 a0001c0030 a0001c0036 a0002c0002 a0003c0006 a0003c0017 a0007c0021 a0017c0054 a0023c0049 a0028c0043 a0032c0055	a0001c0001t0001 a0001c0001t0008 a0001c0001t0015 others(23): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0029 a0001c0001t0035 a0001c0001t0036 a0001c0001t0038 a0001c0003t0001 a0001c0003t0014 a0001c0003t0034 a0001c0005t0001 a0001c0008t0001 a0001c0022t0001 a0001c0030t0001 a0001c0036t0001 a0002c0002t0002 a0003c0006t0047 a0003c0017t0045 a0003c0017t0046 a0007c0021t0001 a0017c0054t0001 a0023c0049t0010 a0028c0043t0001 a0032c0055t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(62): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0035 a0001c0001t0001g0038 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0069 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0079 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0149 a0001c0001t0001g0160 a0001c0001t0001g0166 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0215 a0001c0001t0001g0221 a0001c0001t0008g0008 a0001c0001t0015g0009 a0001c0001t0016g0003 a0001c0001t0016g0113 a0001c0001t0017g0108 a0001c0001t0029g0218 a0001c0001t0035g0183 a0001c0001t0036g0003 a0001c0001t0038g0043 a0001c0003t0001g0003 a0001c0003t0001g0042 a0001c0003t0014g0003 a0001c0003t0034g0025 a0001c0005t0001g0003 a0001c0005t0001g0034 a0001c0008t0001g0014 a0001c0008t0001g0109 a0001c0022t0001g0003 a0001c0030t0001g0155 a0001c0036t0001g0003 a0002c0002t0002g0157 a0002c0002t0002g0271 a0002c0002t0002g0272 a0003c0006t0047g0255 a0003c0017t0045g0252 a0003c0017t0046g0171 a0007c0021t0001g0148 a0017c0054t0001g0016 a0023c0049t0010g0003 a0028c0043t0001g0219 a0032c0055t0001g0003	72	350	0.2057	10	c.120 others(25): Show c.1208-67_1208-66insGGGGGGGGGG	APC2	ENSG00000115266.12	transcript	ENST00000590469.6	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr19	TogoVar
APC2_chr19_1445121_1478244	1457898	G G	GGGGGGGG others(3): Show GGGGGGGGGGA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0008 a0008	a0008c0012 a0008c0012	a0008c0012t0001 a0008c0012t0001	a0008c0012t0001g0084 a0008c0012t0001g0084	1	350	0.0029	10	c.120 others(25): Show c.1208-67_1208-66insGGGGGGGGGA	APC2	ENSG00000115266.12	transcript	ENST00000590469.6	protein_coding	9/14			chr19	TogoVar
APCDD1L_chr20_58454101_58520399	58456235	G G	GTTTTTTT others(3): Show GTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp2 HG01175.hp2 HG02055.hp2 others(6): Show HG01168.hp2 HG01175.hp2 HG02055.hp2 HG02572.hp2 HG02922.hp1 HG03041.hp2 HG03195.hp2 HG03516.hp2 NA20805.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0007 a0001c0001 a0002c0002 a0006c0007	a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 a0002c0002t0003 a0006c0007t0003	a0001c0001t0001g0136 a0001c0001t0003g0049 a0001c0001t0003g0109 others(6): Show a0001c0001t0001g0136 a0001c0001t0003g0049 a0001c0001t0003g0109 a0002c0002t0001g0255 a0002c0002t0001g0298 a0002c0002t0001g0299 a0002c0002t0001g0351 a0002c0002t0003g0116 a0006c0007t0003g0113	9	376	0.0239	10	c.45 others(21): Show c.4554_*4555insAAAAAAAAAA	APCDD1L	ENSG00000198768.11	transcript	ENST00000371149.8	protein_coding		2865		chr20	TogoVar
APCDD1L_chr20_58454101_58520399	58485143	T T	TACACACA others(3): Show TACACACACAC	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03579.hp1 HG03098.hp1 HG03579.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0005 a0004c0004t0005 a0001c0001t0005 a0004c0004t0005	a0001c0001t0005g0137 a0004c0004t0005g0138 a0001c0001t0005g0137 a0004c0004t0005g0138	2	376	0.0053	10	c.50- others(27): Show c.50-14406_50-14397dupGTGTGTGTGT	APCDD1L	ENSG00000198768.11	transcript	ENST00000371149.8	protein_coding	1/3			chr20	TogoVar
APCDD1_chr18_10449635_10494949	10459316	G G	GCACACAC others(3): Show GCACACACACA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01243.hp1 HG02630.hp2 others(10): Show HG00408.hp1 HG01243.hp1 HG02630.hp2 HG02809.hp1 HG02896.hp1 HG02922.hp1 HG03041.hp1 HG03098.hp2 NA18964.hp1 NA18985.hp1 NA19030.hp2 NA19081.hp1 NA20129.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0003c0006 a0004c0017 a0006c0009	a0001c0001t0002 a0001c0001t0010 a0001c0001t0020 others(7): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0020 a0001c0002t0001 a0001c0002t0005 a0001c0004t0006 a0002c0003t0003 a0003c0006t0012 a0004c0017t0003 a0006c0009t0006	a0001c0001t0002g0284 a0001c0001t0010g0281 a0001c0001t0020g0261 others(9): Show a0001c0001t0002g0284 a0001c0001t0010g0281 a0001c0001t0020g0261 a0001c0002t0001g0280 a0001c0002t0005g0026 a0001c0002t0005g0278 a0001c0004t0006g0277 a0001c0004t0006g0283 a0002c0003t0003g0282 a0003c0006t0012g0279 a0004c0017t0003g0276 a0006c0009t0006g0285	13	422	0.0308	10	c.58+ others(25): Show c.58+4292_58+4301dupCACACACACA	APCDD1	ENSG00000154856.13	transcript	ENST00000355285.10	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr18	TogoVar
APCDD1_chr18_10449635_10494949	10464311	A A	AACACACA others(3): Show AACACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00408.hp2 others(73): Show HG00099.hp2 HG00140.hp1 HG00408.hp2 HG00597.hp2 HG00609.hp2 HG00639.hp2 HG00673.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01928.hp2 HG01943.hp1 HG01975.hp1 HG02004.hp2 HG02040.hp2 HG02056.hp1 HG02135.hp1 HG02148.hp2 HG02155.hp2 HG02273.hp1 HG02293.hp2 HG02451.hp1 HG02523.hp2 HG02572.hp1 HG02738.hp2 HG02965.hp1 HG03017.hp1 HG03139.hp1 HG03942.hp1 HG03942.hp2 HG06807.hp2 NA18906.hp2 NA18945.hp1 NA18950.hp2 NA18963.hp1 NA18972.hp1 NA18975.hp2 NA18977.hp2 NA18984.hp2 NA18988.hp2 NA18992.hp1 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19004.hp2 NA19006.hp2 NA19007.hp2 NA19011.hp2 NA19030.hp1 NA19054.hp1 NA19063.hp1 NA19064.hp2 NA19068.hp2 NA19075.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp2 NA19084.hp1 NA19085.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0007 a0001c0014 a0001c0016 a0002c0003	a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 others(16): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0001t0010 a0001c0001t0016 a0001c0001t0019 a0001c0001t0020 a0001c0001t0038 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005 a0001c0002t0013 a0001c0002t0015 a0001c0002t0022 a0001c0004t0006 a0001c0007t0042 a0001c0014t0009 a0001c0016t0033 a0002c0003t0003	a0001c0001t0002g0008 a0001c0001t0002g0116 a0001c0001t0002g0133 others(64): Show a0001c0001t0002g0008 a0001c0001t0002g0116 a0001c0001t0002g0133 a0001c0001t0002g0149 a0001c0001t0002g0150 a0001c0001t0002g0155 a0001c0001t0002g0161 a0001c0001t0002g0168 a0001c0001t0002g0216 a0001c0001t0002g0219 a0001c0001t0002g0316 a0001c0001t0002g0317 a0001c0001t0002g0344 a0001c0001t0002g0358 a0001c0001t0004g0203 a0001c0001t0004g0252 a0001c0001t0004g0254 a0001c0001t0004g0349 a0001c0001t0004g0355 a0001c0001t0004g0360 a0001c0001t0004g0368 a0001c0001t0008g0024 a0001c0001t0010g0109 a0001c0001t0010g0154 a0001c0001t0016g0006 a0001c0001t0019g0164 a0001c0001t0020g0054 a0001c0001t0038g0221 a0001c0002t0001g0011 a0001c0002t0001g0027 a0001c0002t0001g0049 a0001c0002t0001g0059 a0001c0002t0001g0073 a0001c0002t0001g0107 a0001c0002t0001g0115 a0001c0002t0001g0187 a0001c0002t0001g0202 a0001c0002t0001g0249 a0001c0002t0001g0251 a0001c0002t0001g0253 a0001c0002t0001g0255 a0001c0002t0001g0287 a0001c0002t0001g0322 a0001c0002t0001g0331 a0001c0002t0001g0334 a0001c0002t0001g0345 a0001c0002t0001g0346 a0001c0002t0001g0357 a0001c0002t0001g0361 a0001c0002t0003g0104 a0001c0002t0003g0248 a0001c0002t0003g0256 a0001c0002t0005g0018 a0001c0002t0005g0132 a0001c0002t0005g0228 a0001c0002t0005g0332 a0001c0002t0005g0333 a0001c0002t0013g0190 a0001c0002t0015g0130 a0001c0002t0015g0131 a0001c0002t0015g0347 a0001c0002t0022g0110 a0001c0004t0006g0250 a0001c0007t0042g0067 a0001c0014t0009g0229 a0001c0016t0033g0231 a0002c0003t0003g0348	76	422	0.1801	10	c.59- others(25): Show c.59-4134_59-4125dupCACACACACA	APCDD1	ENSG00000154856.13	transcript	ENST00000355285.10	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr18	TogoVar
APC_chr5_112732885_112851239	112735500	C C	CATATATA others(3): Show CATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp1 NA19083.hp2 HG03195.hp1 NA19083.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0163 a0001c0002t0003g0169 a0001c0002t0003g0163 a0001c0002t0003g0169	2	294	0.0068	10	c.-24 others(21): Show c.-2444_-2443insATATATATAT	APC	ENSG00000134982.18	transcript	ENST00000257430.9	protein_coding		2384		chr5	TogoVar
APC_chr5_112732885_112851239	112836165	T T	TCCCCCCC others(3): Show TCCCCCCCCCC	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0192 a0001c0003t0002g0192	1	294	0.0034	10	c.195 others(29): Show c.1958+1005_1958+1014dupCCCCCCCCCC	APC	ENSG00000134982.18	transcript	ENST00000257430.9	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
APC_chr5_112732885_112851239	112836165	T T	TTCCCCCC others(3): Show TTCCCCCCCCC	intron_variant intron_variant	MODIFIER	HG03927.hp2 NA18954.hp2 NA18975.hp1 others(1): Show HG03927.hp2 NA18954.hp2 NA18975.hp1 NA18990.hp1	a0001 a0010 a0001 a0010	a0001c0001 a0010c0018 a0001c0001 a0010c0018	a0001c0001t0001 a0010c0018t0001 a0001c0001t0001 a0010c0018t0001	a0001c0001t0001g0204 a0001c0001t0001g0222 a0001c0001t0001g0265 others(1): Show a0001c0001t0001g0204 a0001c0001t0001g0222 a0001c0001t0001g0265 a0010c0018t0001g0268	4	294	0.0136	10	c.195 others(29): Show c.1958+1000_1958+1001insTCCCCCCCCC	APC	ENSG00000134982.18	transcript	ENST00000257430.9	protein_coding	15/15			chr5	TogoVar
APEH_chr3_49669351_49688971	49673087	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01074.hp2 HG02698.hp2 others(3): Show HG01074.hp1 HG01074.hp2 HG02698.hp2 HG03516.hp1 NA18942.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0042 a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0042	6	318	0.0189	10	c.-13 others(21): Show c.-1315_-1314insTTTTTTTTTT	APEH	ENSG00000164062.13	transcript	ENST00000296456.10	protein_coding		1263		chr3	TogoVar
APELA_chr4_164872178_164902527	164884107	A A	AAGAAAGA others(3): Show AAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0190 a0001c0002t0003g0190	1	434	0.0023	10	c.1+ others(25): Show c.1+5100_*1+5109dupGAAAGAAAGA	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
APELA_chr4_164872178_164902527	164884119	A A	AGAAGAGA others(3): Show AGAAGAGAAAG	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0174 a0001c0002t0001g0174	1	434	0.0023	10	c.1+ others(25): Show c.1+5110_*1+5111insGAAGAGAAAG	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding	2/2			chr4	TogoVar
APELA_chr4_164872178_164902527	164884121	G G	GAAAGAAA others(3): Show GAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01109.hp2 HG01123.hp1 others(31): Show HG00597.hp2 HG01109.hp2 HG01123.hp1 HG01261.hp1 HG01981.hp2 HG02257.hp2 HG02486.hp1 HG02683.hp2 HG02717.hp1 HG02896.hp2 HG02897.hp2 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03490.hp1 HG03492.hp2 HG03669.hp2 NA18940.hp2 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18969.hp1 NA18993.hp1 NA18998.hp2 NA19000.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19060.hp1 NA19070.hp1 NA19078.hp1 NA19084.hp2 NA19086.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0002t0005 a0001c0004t0013	a0001c0001t0001g0023 a0001c0001t0001g0043 a0001c0001t0001g0044 others(20): Show a0001c0001t0001g0023 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0051 a0001c0001t0001g0057 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0216 a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0263 a0001c0001t0001g0296 a0001c0001t0002g0219 a0001c0001t0003g0010 a0001c0001t0003g0286 a0001c0001t0004g0287 a0001c0001t0007g0030 a0001c0001t0007g0064 a0001c0001t0008g0062 a0001c0002t0005g0042 a0001c0004t0013g0066 a0001c0004t0013g0070	34	434	0.0783	10	c.1+ others(25): Show c.1+5113_*1+5114insAAGAAAGAAA	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
APELA_chr4_164872178_164902527	164899627	G G	GGAGAGAG others(3): Show GGAGAGAGAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0013 a0001c0004t0013	a0001c0004t0013g0070 a0001c0004t0013g0070	1	434	0.0023	10	c.42 others(21): Show c.4213_*4214insGAGAGAGAGA	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding		2101		chr4	TogoVar
APH1B_chr15_63272605_63314126	63303874	A A	AACACACA others(3): Show AACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0223 a0001c0001t0005g0223	1	422	0.0024	10	c.606 others(27): Show c.606+1427_606+1436dupACACACACAC	APH1B	ENSG00000138613.14	transcript	ENST00000261879.10	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr15	TogoVar
API5_chr11_43306996_43349529	43307947	G G	GTATATAT others(3): Show GTATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp2 HG02622.hp2 HG02630.hp1 others(7): Show HG02109.hp2 HG02622.hp2 HG02630.hp1 HG02717.hp1 HG02809.hp1 HG02965.hp1 HG02970.hp2 HG03041.hp2 HG03130.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0047 others(3): Show a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0061	10	384	0.0260	10	c.-41 others(21): Show c.-4181_-4180insTATATATATA	API5	ENSG00000166181.13	transcript	ENST00000531273.6	protein_coding		4048		chr11	TogoVar
APLF_chr2_68462585_68585162	68475881	T T	TTATATAT others(3): Show TTATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0036 a0002c0002t0002g0036	1	176	0.0057	10	c.96+ others(25): Show c.96+8062_96+8071dupATATATATAT	APLF	ENSG00000169621.11	transcript	ENST00000303795.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
APLNR_chr11_57228591_57242250	57239109	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG01243.hp1 others(18): Show HG00423.hp1 HG00423.hp2 HG01243.hp1 HG01433.hp1 HG02145.hp2 HG02615.hp1 HG02717.hp2 HG02723.hp2 HG02976.hp2 HG03098.hp2 HG03139.hp1 HG03516.hp2 HG03942.hp1 HG04184.hp1 HG06807.hp1 NA18906.hp2 NA18964.hp1 NA18988.hp1 NA19010.hp1 NA19087.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0013 a0001c0001t0015 a0001c0002t0003 a0001c0002t0006 a0002c0004t0003	a0001c0001t0001g0000 a0001c0001t0002g0000 a0001c0001t0003g0000 others(6): Show a0001c0001t0001g0000 a0001c0001t0002g0000 a0001c0001t0003g0000 a0001c0001t0006g0000 a0001c0001t0013g0000 a0001c0001t0015g0000 a0001c0002t0003g0000 a0001c0002t0006g0000 a0002c0004t0003g0000	21	430	0.0488	10	c.-21 others(21): Show c.-2106_-2105insTTTTTTTTTT	APLNR	ENSG00000134817.12	transcript	ENST00000606794.2	protein_coding		1860		chr11	TogoVar
APLP2_chr11_130064894_130149805	130083026	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0245 a0001c0001t0002g0245	1	274	0.0037	10	c.105 others(29): Show c.105+12962_105+12971dupTTTTTTTTTT	APLP2	ENSG00000084234.18	transcript	ENST00000338167.10	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
APOA1_chr11_116830751_116842622	116831166	C C	CCTTTCCC others(3): Show CCTTTCCCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	448	0.0022	10	c.46 others(21): Show c.4632_*4641dupAAAGGGAAAG	APOA1	ENSG00000118137.10	transcript	ENST00000236850.5	protein_coding		4584		chr11	TogoVar
APOA1_chr11_116830751_116842622	116831189	A A	ATTTTTCT others(3): Show ATTTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02129.hp2 NA18943.hp2 NA18962.hp2 HG02129.hp2 NA18943.hp2 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	3	448	0.0067	10	c.46 others(21): Show c.4618_*4619insGAAAGAAAAA	APOA1	ENSG00000118137.10	transcript	ENST00000236850.5	protein_coding		4561		chr11	TogoVar
APOA1_chr11_116830751_116842622	116842618	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG01123.hp2 HG02109.hp1 others(14): Show HG01109.hp1 HG01123.hp2 HG02109.hp1 HG02257.hp2 HG02559.hp2 HG02615.hp1 HG02809.hp1 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG03041.hp2 HG03130.hp1 HG03471.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0001 a0001c0001t0001g0004	17	448	0.0380	10	c.-50 others(21): Show c.-5035_-5034insAAAAAAAAAA	APOA1	ENSG00000118137.10	transcript	ENST00000236850.5	protein_coding		4997		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818070	T T	TATATATA others(3): Show TATATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0008 a0001c0006t0001g0008	1	462	0.0022	10	c.27 others(21): Show c.2796_*2797insTCATATATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2629		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818348	T T	TTATATAT others(3): Show TTATATATGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp1 HG01123.hp2 HG01243.hp2 others(32): Show HG01074.hp1 HG01123.hp2 HG01243.hp2 HG01891.hp2 HG02145.hp1 HG02257.hp2 HG02280.hp2 HG02615.hp1 HG02615.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA19030.hp1 NA19043.hp1 NA19240.hp2 NA21309.hp2	a0001 a0001	a0001c0003 a0001c0021 a0001c0003 a0001c0021	a0001c0003t0001 a0001c0021t0001 a0001c0003t0001 a0001c0021t0001	a0001c0003t0001g0005 a0001c0021t0001g0030 a0001c0003t0001g0005 a0001c0021t0001g0030	35	462	0.0758	10	c.25 others(21): Show c.2518_*2519insTTCATATATA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2351		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818348	T T	TTATATGA others(3): Show TTATATGAATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02896.hp1 NA18522.hp1 HG02896.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0010 a0001c0001t0004g0038 a0001c0001t0001g0010 a0001c0001t0004g0038	2	462	0.0043	10	c.25 others(21): Show c.2518_*2519insTATTCATATA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2351		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818359	T T	TATATATA others(3): Show TATATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	462	0.0022	10	c.25 others(21): Show c.2507_*2508insTCATATATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2340		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818381	T T	TATATATA others(3): Show TATATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01358.hp1 HG03834.hp1 HG01358.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	2	462	0.0043	10	c.24 others(21): Show c.2485_*2486insTCATATATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2318		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818393	T T	TATATATA others(3): Show TATATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp1 NA18971.hp2 NA18973.hp2 others(7): Show NA18965.hp1 NA18971.hp2 NA18973.hp2 NA18977.hp2 NA18978.hp2 NA18984.hp2 NA18989.hp1 NA18990.hp2 NA18992.hp2 NA18994.hp2	a0001 a0014 a0001 a0014	a0001c0005 a0014c0013 a0001c0005 a0014c0013	a0001c0005t0001 a0014c0013t0001 a0001c0005t0001 a0014c0013t0001	a0001c0005t0001g0006 a0014c0013t0001g0020 a0001c0005t0001g0006 a0014c0013t0001g0020	10	462	0.0217	10	c.24 others(21): Show c.2473_*2474insTCATATATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2306		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818437	T T	TATATATA others(3): Show TATATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 NA19080.hp2 HG00735.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	2	462	0.0043	10	c.24 others(21): Show c.2429_*2430insTCATATATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2262		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818559	T T	TTATATAT others(3): Show TTATATATGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02040.hp1 HG02080.hp2 HG02129.hp2 others(10): Show HG02040.hp1 HG02080.hp2 HG02129.hp2 HG02523.hp1 HG02809.hp1 NA18747.hp2 NA18948.hp2 NA18978.hp1 NA18986.hp1 NA19002.hp2 NA19080.hp2 NA19083.hp2 NA19087.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0011c0015 a0001c0001 a0011c0015	a0001c0001t0002 a0011c0015t0002 a0001c0001t0002 a0011c0015t0002	a0001c0001t0002g0001 a0011c0015t0002g0027 a0001c0001t0002g0001 a0011c0015t0002g0027	13	462	0.0281	10	c.23 others(21): Show c.2307_*2308insTTCATATATA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2140		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818606	G G	GTATATAT others(3): Show GTATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	462	0.0022	10	c.22 others(21): Show c.2260_*2261insTATATATATA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2093		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818608	G G	GTATATAT others(3): Show GTATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	462	0.0022	10	c.22 others(21): Show c.2258_*2259insTATATATATA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2091		chr11	TogoVar
APOA4_chr11_116815700_116828304	116824795	A A	ATTTTTTT others(3): Show ATTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0008 a0001c0006t0001g0008	1	462	0.0022	10	c.-16 others(21): Show c.-1605_-1604insAAAAAAAAAA	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		1492		chr11	TogoVar
APOBEC1_chr12_7644400_7670908	7657043	C C	CGTGTGTG others(3): Show CGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01258.hp1 HG01928.hp1 others(4): Show HG01257.hp2 HG01258.hp1 HG01928.hp1 HG02300.hp1 HG02523.hp1 NA19079.hp2 NA19089.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0001 a0001c0003t0001 a0002c0001t0001 a0001c0002t0001 a0001c0003t0001 a0002c0001t0001	a0001c0002t0001g0018 a0001c0002t0001g0341 a0001c0002t0001g0355 others(3): Show a0001c0002t0001g0018 a0001c0002t0001g0341 a0001c0002t0001g0355 a0001c0003t0001g0401 a0001c0003t0001g0406 a0002c0001t0001g0270	7	432	0.0162	10	c.17- others(25): Show c.17-2421_17-2412dupACACACACAC	APOBEC1	ENSG00000111701.7	transcript	ENST00000229304.5	protein_coding	1/4			chr12	TogoVar
APOBEC1_chr12_7644400_7670908	7658045	C C	CTGTTTTG others(3): Show CTGTTTTGTTT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01243.hp1 HG01978.hp1 others(3): Show HG01099.hp1 HG01243.hp1 HG01978.hp1 HG06807.hp1 NA18947.hp2 NA18954.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0138 a0001c0002t0001g0164 a0001c0002t0001g0167 others(3): Show a0001c0002t0001g0138 a0001c0002t0001g0164 a0001c0002t0001g0167 a0001c0002t0001g0190 a0001c0002t0001g0225 a0001c0002t0001g0299	6	432	0.0139	10	c.17- others(25): Show c.17-3423_17-3414dupAAACAAAACA	APOBEC1	ENSG00000111701.7	transcript	ENST00000229304.5	protein_coding	1/4			chr12	TogoVar

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