Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LINGO2_chr9_27932617_29218601	29055945	T T	TATATATA others(43): Show TATATATATACATATATGTATATATATATATATGTATATATATATATACA C	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp1 NA19043.hp1 HG02895.hp2 HG02897.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0012 a0001c0001t0006 a0001c0001t0012	a0001c0001t0006g0003 a0001c0001t0006g0004 a0001c0001t0012g0005 a0001c0001t0006g0003 a0001c0001t0006g0004 a0001c0001t0012g0005	3	62	0.0484	50	c.-49 others(73): Show c.-491-108032_-491-108031insGTGTATATATATATATACATAT ATATATATATACATATATGTATATATAT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	1/6			chr9	TogoVar
LINS1_chr15_100561924_100607184	100582531	C C	CACTGGGT others(43): Show CACTGGGTCTTCCGTCTACACTATGGCCCACTAGCCTAGTCTTGGTCTTA T	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0287 a0001c0001t0005g0287	1	430	0.0023	50	c.-10 others(69): Show c.-103-1636_-103-1587dupATAAGACCAAGACTAGGCTAGTGGGC CATAGTGTAGACGGAAGACCCAGT	LINS1	ENSG00000140471.17	transcript	ENST00000314742.13	protein_coding	1/6			chr15	TogoVar
LIPG_chr18_49557057_49604185	49579764	C C	CTTTCCTT others(43): Show CTTTCCTTTCCTTTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC T	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG03130.hp1 HG00423.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0119 a0001c0005t0007 a0001c0001t0119 a0001c0005t0007	a0001c0001t0119g0294 a0001c0005t0007g0182 a0001c0001t0119g0294 a0001c0005t0007g0182	2	384	0.0052	50	c.794 others(67): Show c.794-1647_794-1646insCTTTCCTTTCCTTTCTTTTCTTTTCTTT TCTTTTCTTTTCTTTTCTTTTC	LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr18	TogoVar
LIPT1_chr2_99149967_99168137	99161291	A A	AAAAAAAA others(43): Show AAAAAAAAAATATATATATATATATATATATATATATATATATATATAAA T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0102 a0001c0002t0001g0102	1	406	0.0025	50	c.-1- others(63): Show c.-1-665_-1-664insAAAAAAAATATATATATATATATATATATATA TATATATATATATAAATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LMAN2_chr5_177326567_177356668	177326869	G G	GAGAAAGA others(43): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGA A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18946.hp1 NA18946.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	376	0.0027	50	c.52 others(61): Show c.5216_*5217insTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCT	LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding		4697		chr5	TogoVar
LMO2_chr11_33853576_33897076	33880162	C C	CATGATAT others(43): Show CATGATATATACACATGATATATATATATATCATATATACACATGATATA T	intron_variant intron_variant	MODIFIER	HG03195.hp1 NA18522.hp1 HG03195.hp1 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0147 a0001c0002t0003g0202 a0001c0002t0003g0147 a0001c0002t0003g0202	2	442	0.0045	50	c.-27 others(69): Show c.-272+1661_-272+1662insATATATCATGTGTATATATGATATAT ATATATATCATGTGTATATATCAT	LMO2	ENSG00000135363.12	transcript	ENST00000257818.3	protein_coding	2/5			chr11	TogoVar
LMO2_chr11_33853576_33897076	33880162	C C	CATGATAT others(43): Show CATGATATATACACATGATATATATATATCATATATACACATGATATATA T	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0178 a0001c0004t0003g0178	1	442	0.0023	50	c.-27 others(69): Show c.-272+1661_-272+1662insATATATATCATGTGTATATATGATAT ATATATATCATGTGTATATATCAT	LMO2	ENSG00000135363.12	transcript	ENST00000257818.3	protein_coding	2/5			chr11	TogoVar
LMO2_chr11_33853576_33897076	33880167	G G	GATATATA others(43): Show GATATATACACATGATATATATATATCATATATACACATGATATATATAT C	intron_variant intron_variant	MODIFIER	HG02647.hp1 NA18906.hp2 NA19030.hp2 HG02647.hp1 NA18906.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0016 a0001c0002t0011 a0001c0002t0016	a0001c0002t0011g0138 a0001c0002t0011g0139 a0001c0002t0016g0063 a0001c0002t0011g0138 a0001c0002t0011g0139 a0001c0002t0016g0063	3	442	0.0068	50	c.-27 others(69): Show c.-272+1656_-272+1657insGATATATATATCATGTGTATATATGA TATATATATATCATGTGTATATAT	LMO2	ENSG00000135363.12	transcript	ENST00000257818.3	protein_coding	2/5			chr11	TogoVar
LMO2_chr11_33853576_33897076	33880252	G G	GATATATA others(43): Show GATATATATATCATATATACACATGATATATATATCATACATACACATGA T	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0232 a0001c0002t0006g0232	1	442	0.0023	50	c.-27 others(69): Show c.-272+1571_-272+1572insATCATGTGTATGTATGATATATATAT CATGTGTATATATGATATATATAT	LMO2	ENSG00000135363.12	transcript	ENST00000257818.3	protein_coding	2/5			chr11	TogoVar
LMO7_chr13_75631330_75864866	75632862	G G	GTTTTTTT others(43): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0001 a0007c0009t0001	a0007c0009t0001g0166 a0007c0009t0001g0166	1	272	0.0037	50	c.-37 others(61): Show c.-3796_-3795insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTT	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding		3467		chr13	TogoVar
LMO7_chr13_75631330_75864866	75776164	T T	TATATATA others(43): Show TATATATATATATATATATATATCGGATATATATATATATATATATATCG G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00738.hp2 HG00140.hp1 HG00738.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0002 a0002c0011t0002	a0002c0011t0002g0075 a0002c0011t0002g0076 a0002c0011t0002g0075 a0002c0011t0002g0076	2	272	0.0074	50	c.317 others(69): Show c.317+15148_317+15149insCGGATATATATATATATATATATATC GGATATATATATATATATATATAT	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding	4/30		INFO_REALIGN_3_PRIME	chr13	TogoVar
LMO7_chr13_75631330_75864866	75776166	T T	TATATATA others(43): Show TATATATATATATATATATATCGGATATATATATATATATATATATATCG G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01168.hp2 HG00099.hp2 HG01168.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0002 a0002c0011t0002	a0002c0011t0002g0031 a0002c0011t0002g0084 a0002c0011t0002g0031 a0002c0011t0002g0084	2	272	0.0074	50	c.317 others(69): Show c.317+15148_317+15149insCGGATATATATATATATATATATATA TCGGATATATATATATATATATAT	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding	4/30		INFO_REALIGN_3_PRIME	chr13	TogoVar
LMOD3_chr3_69101065_69127595	69110853	A A	AAAAAAAA others(43): Show AAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATA T	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0016 a0001c0002t0016	a0001c0002t0016g0337 a0001c0002t0016g0337	1	428	0.0023	50	c.165 others(69): Show c.1657-1733_1657-1732insATATATATATATATATATATATATAT TTTTTTTTTTTTTTTTTTTTTTTT	LMOD3	ENSG00000163380.16	transcript	ENST00000420581.7	protein_coding	2/2			chr3	TogoVar
LMOD3_chr3_69101065_69127595	69110853	A A	AAAAAAAA others(43): Show AAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATA T	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0041 a0001c0002t0041	a0001c0002t0041g0361 a0001c0002t0041g0361	1	428	0.0023	50	c.165 others(69): Show c.1657-1733_1657-1732insATATATATATATATATATATATATAT ATTTTTTTTTTTTTTTTTTTTTTT	LMOD3	ENSG00000163380.16	transcript	ENST00000420581.7	protein_coding	2/2			chr3	TogoVar
LMOD3_chr3_69101065_69127595	69110853	A A	AAAAAAAA others(43): Show AAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATA T	intron_variant intron_variant	MODIFIER	NA18963.hp2 NA18978.hp2 NA18982.hp1 NA18963.hp2 NA18978.hp2 NA18982.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0327 a0001c0002t0004g0332 a0001c0002t0004g0345 a0001c0002t0004g0327 a0001c0002t0004g0332 a0001c0002t0004g0345	3	428	0.0070	50	c.165 others(69): Show c.1657-1733_1657-1732insATATATATATATATATATATATATAT ATATTTTTTTTTTTTTTTTTTTTT	LMOD3	ENSG00000163380.16	transcript	ENST00000420581.7	protein_coding	2/2			chr3	TogoVar
LMTK2_chr7_98101862_98214638	98140148	T T	TTCCTTCC others(43): Show TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT C	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0006 a0004c0004t0006	a0004c0004t0006g0365 a0004c0004t0006g0365	1	390	0.0026	50	c.232 others(67): Show c.232-1248_232-1247insCCTTCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTTCCTTCCTTCCTTCT	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LMTK2_chr7_98101862_98214638	98140169	T T	TCCTTCCT others(43): Show TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC C	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03579.hp2 HG02976.hp2 HG03579.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0017 a0001c0007t0052 a0001c0007t0017 a0001c0007t0052	a0001c0007t0017g0253 a0001c0007t0052g0251 a0001c0007t0017g0253 a0001c0007t0052g0251	2	390	0.0051	50	c.232 others(67): Show c.232-1228_232-1227insCCTTCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTTCCTTCCTTCCTTCC	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13			chr7	TogoVar
LOC102723971_chr9_135609183_135624893	135620157	T T	TCTACTCC others(43): Show TCTACTCCCCCTTCTCCCCCTACTCCTTCTCCCCTTCTCCCCCTTCCCCC C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp2 NA19030.hp1 HG02922.hp2 NA19030.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0081 a0002c0002t0005g0083 a0002c0002t0005g0081 a0002c0002t0005g0083	2	450	0.0044	50	c.12 others(61): Show c.1205_*1206insCTACTCCCCCTTCTCCCCCTACTCCTTCTCCCCT TCTCCCCCTTCCCCCC	LOC102723971	ENSG00000236543.3	transcript	ENST00000430816.3	protein_coding		265		chr9	TogoVar
LPCAT1_chr5_1456427_1528960	1483892	G G	GAGCTGGA others(43): Show GAGCTGGAAGACATCCGTGGAGGGACACTTTCTGCTGTAACATCGCGCAC C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp2 HG01070.hp2 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0096 a0001c0001t0002g0127 a0001c0001t0002g0096 a0001c0001t0002g0127	2	386	0.0052	50	c.668 others(65): Show c.668-456_668-407dupGGTGCGCGATGTTACAGCAGAAAGTGTCCC TCCACGGATGTCTTCCAGCT	LPCAT1	ENSG00000153395.10	transcript	ENST00000283415.4	protein_coding	5/13			chr5	TogoVar
LPCAT1_chr5_1456427_1528960	1525222	C C	CCCATAAG others(43): Show CCCATAAGAGTCCCAGCCCATGCCTAGCAGCAGCACCTGTCCCAAGTGCC A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0297 a0001c0001t0002g0297	1	386	0.0026	50	c.-13 others(61): Show c.-1379_-1378insTGGCACTTGGGACAGGTGCTGCTGCTAGGCATGG GCTGGGACTCTTATGG	LPCAT1	ENSG00000153395.10	transcript	ENST00000283415.4	protein_coding		1263		chr5	TogoVar
LPIN2_chr18_2911999_3018144	2956311	G G	GGTGTGTG others(43): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG T	intron_variant intron_variant	MODIFIER	HG02976.hp2 NA19007.hp1 NA19087.hp1 others(1): Show HG02976.hp2 NA19007.hp1 NA19087.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0030 a0001c0001t0068 others(1): Show a0001c0001t0019 a0001c0001t0030 a0001c0001t0068 a0001c0001t0077	a0001c0001t0019g0023 a0001c0001t0030g0231 a0001c0001t0068g0024 others(1): Show a0001c0001t0019g0023 a0001c0001t0030g0231 a0001c0001t0068g0024 a0001c0001t0077g0021	4	380	0.0105	50	c.193 others(67): Show c.193-1713_193-1712insACACACACACACACACACACACACACAC ACACACACACACACACACACAC	LPIN2	ENSG00000101577.11	transcript	ENST00000677752.1	protein_coding	2/19			chr18	TogoVar
LPP_chr3_188149157_188895671	188361530	T T	TCCTCTCC others(43): Show TCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTC C	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0050 a0001c0002t0050	a0001c0002t0050g0052 a0001c0002t0050g0052	1	76	0.0132	50	c.-10 others(69): Show c.-10+19825_-10+19826insTCCTCTCCTCTCCTCTCCTCTCCTCT CCTCTCCTCCCCTCTCCTCTCCTC	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197817360	G G	GTGTGTGT others(43): Show GTGTGTGTGTCTGTGTGTGTGTGTGTGTATATATATATATATATATATAT A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG04115.hp2 HG00280.hp2 HG04115.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0004t0003 a0001c0002t0001 a0001c0004t0003	a0001c0002t0001g0133 a0001c0004t0003g0240 a0001c0002t0001g0133 a0001c0004t0003g0240	2	292	0.0069	50	c.534 others(63): Show c.534+59_534+60insGTGTGTGTCTGTGTGTGTGTGTGTGTATATAT ATATATATATATATATAT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197817360	G G	GTGTGTGT others(43): Show GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTATATATATATATATATATAT A	intron_variant intron_variant	MODIFIER	HG02735.hp2 NA18947.hp2 HG02735.hp2 NA18947.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0018 a0001c0001 a0005c0018	a0001c0001t0001 a0005c0018t0001 a0001c0001t0001 a0005c0018t0001	a0001c0001t0001g0179 a0005c0018t0001g0206 a0001c0001t0001g0179 a0005c0018t0001g0206	2	292	0.0069	50	c.534 others(63): Show c.534+59_534+60insGTGTGTGTCTGTGTGTGTGTGTGTGTGTATAT ATATATATATATATATAT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197817360	G G	GTGTGTGT others(43): Show GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTATATATATATATATATAT A	intron_variant intron_variant	MODIFIER	NA20805.hp2 NA20805.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0058 a0001c0004t0058	a0001c0004t0058g0032 a0001c0004t0058g0032	1	292	0.0034	50	c.534 others(63): Show c.534+59_534+60insGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTAT ATATATATATATATATAT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197887731	T T	TGGGGCTG others(43): Show TGGGGCTGAGAGCCCCCCCTAGCAGAGCCCTTCCCATCACTGACAGTGTT G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0100 a0001c0001t0051g0100	1	292	0.0034	50	c.40 others(61): Show c.4082_*4083insCTAGCAGAGCCCTTCCCATCACTGACAGTGTTGG GGGCTGAGAGCCCCCC	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	21/21	4083	INFO_REALIGN_3_PRIME	chr3	TogoVar
LRFN5_chr14_41601876_41909549	41826848	T T	TAATAAGT others(43): Show TAATAAGTAATTATTTTGATTCACAAAATAAGTAATTATTTTGATTCACA A	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00639.hp2 HG00738.hp1 others(36): Show HG00558.hp2 HG00639.hp2 HG00738.hp1 HG00741.hp1 HG01070.hp2 HG01071.hp2 HG01106.hp1 HG01167.hp1 HG01192.hp2 HG01256.hp2 HG01258.hp2 HG01361.hp2 HG01891.hp2 HG01928.hp2 HG01943.hp2 HG02004.hp1 HG02055.hp1 HG02257.hp1 HG02559.hp1 HG02647.hp1 HG02895.hp1 HG02922.hp1 HG02970.hp1 HG03041.hp1 HG03098.hp1 HG03195.hp1 HG03471.hp1 HG03486.hp1 HG03688.hp2 HG03831.hp1 HG04199.hp2 NA18906.hp1 NA18906.hp2 NA18947.hp2 NA18980.hp2 NA18993.hp1 NA19000.hp2 NA19005.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0022 a0001c0001t0028 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003	a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0064 others(36): Show a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0001t0001g0119 a0001c0001t0001g0142 a0001c0001t0001g0162 a0001c0001t0001g0208 a0001c0001t0001g0219 a0001c0001t0002g0225 a0001c0001t0003g0236 a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0005g0004 a0001c0001t0005g0071 a0001c0001t0005g0072 a0001c0001t0005g0082 a0001c0001t0005g0090 a0001c0001t0009g0132 a0001c0001t0022g0003 a0001c0001t0028g0120 a0001c0002t0001g0067 a0001c0002t0001g0144 a0001c0002t0001g0145 a0001c0002t0001g0222 a0001c0002t0002g0006 a0001c0002t0002g0010 a0001c0002t0002g0011 a0001c0002t0002g0015 a0001c0002t0002g0017 a0001c0002t0002g0019 a0001c0002t0002g0021 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0030 a0001c0002t0002g0032 a0001c0002t0002g0084 a0001c0002t0003g0231	39	280	0.1393	50	c.-20 others(69): Show c.-20-59683_-20-59634dupAAATAAGTAATTATTTTGATTCACAA AATAAGTAATTATTTTGATTCACA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIG2_chr1_113068198_113137260	113070235	T T	TGCCCGGC others(43): Show TGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCC C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04184.hp1 NA18972.hp2 HG04184.hp1 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0073 a0001c0001t0030 a0001c0001t0073	a0001c0001t0030g0012 a0001c0001t0073g0053 a0001c0001t0030g0012 a0001c0001t0073g0053	2	268	0.0075	50	c.-31 others(61): Show c.-3172_-3171insGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG GGGGGGTCGGCCCCCC	LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding		2962		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070235	T T	TGCCCGGC others(43): Show TGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCC C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp1 HG01433.hp2 HG02056.hp2 HG01099.hp1 HG01433.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0015 a0001c0001t0001g0073 a0001c0001t0013g0058 a0001c0001t0001g0015 a0001c0001t0001g0073 a0001c0001t0013g0058	3	268	0.0112	50	c.-31 others(61): Show c.-3172_-3171insGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG GGGGGTCGGCCCCCCC	LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding		2962		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070267	T T	TGGGGGGG others(43): Show TGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp1 HG02897.hp1 HG02896.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0038 a0001c0001t0016 a0001c0001t0038	a0001c0001t0016g0007 a0001c0001t0038g0006 a0001c0001t0016g0007 a0001c0001t0038g0006	2	268	0.0075	50	c.-31 others(61): Show c.-3140_-3139insGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCC GTCCGGGAGGGAGGTG	LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding		2930		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070278	G G	GCCCCCCG others(43): Show GCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGG C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp2 HG01496.hp1 HG02273.hp1 others(2): Show HG01074.hp2 HG01496.hp1 HG02273.hp1 HG03098.hp2 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0032 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0032 a0001c0001t0036 a0001c0001t0043	a0001c0001t0001g0095 a0001c0001t0006g0065 a0001c0001t0032g0105 others(2): Show a0001c0001t0001g0095 a0001c0001t0006g0065 a0001c0001t0032g0105 a0001c0001t0036g0048 a0001c0001t0043g0108	5	268	0.0187	50	c.-31 others(61): Show c.-3129_-3128insCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGG AGGTGGGGGGGTCGGC	LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding		2919		chr1	TogoVar
LRIG2_chr1_113068198_113137260	113070316	T T	TGGGGGGG others(43): Show TGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG00597.hp2 HG01261.hp1 others(2): Show HG00544.hp1 HG00597.hp2 HG01261.hp1 HG01934.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0011 a0001c0001t0001g0112 a0001c0001t0004g0022 others(2): Show a0001c0001t0001g0011 a0001c0001t0001g0112 a0001c0001t0004g0022 a0001c0001t0004g0028 a0001c0001t0004g0041	5	268	0.0187	50	c.-30 others(61): Show c.-3091_-3090insGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCC GTCCGGGAGGGAGGTG	LRIG2	ENSG00000198799.12	transcript	ENST00000361127.6	protein_coding		2881		chr1	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(43): Show CCTTCCTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT T	intron_variant intron_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0031 a0001c0002t0001g0031	1	332	0.0030	50	c.117 others(67): Show c.117-1079_117-1078insCCTTCCTTCTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(43): Show CCTTCCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT T	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0094 a0001c0002t0001g0094	1	332	0.0030	50	c.117 others(67): Show c.117-1079_117-1078insCCTTCTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRMDA_chr10_75426624_76565168	75672524	T T	TCCTTTCC others(43): Show TCCTTTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTC C	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0007 a0001c0002t0007g0007	1	46	0.0217	50	c.131 others(71): Show c.131+234033_131+234034insTTCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCCCTCCCCTCCCCTCCCCT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP1B_chr2_140226423_142136016	140613394	A A	AATATATA others(43): Show AATATATATAATTATATACATATAAATATAAATAATTATATACATATAAA T	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0003 a0001c0007t0003	a0001c0007t0003g0003 a0001c0007t0003g0003	1	28	0.0357	50	c.680 others(71): Show c.6800-11756_6800-11755insATTTATATGTATATAATTATTTAT ATTTATATGTATATAATTATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	41/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141131407	T T	TTATATAT others(43): Show TTATATATATATATATATATATATATATATATATATATATATATATATAT A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0026 a0001c0026	a0001c0026t0001 a0001c0026t0001	a0001c0026t0001g0025 a0001c0026t0001g0025	1	28	0.0357	50	c.101 others(71): Show c.1013+57013_1013+57014insTATATATATATATATATATATATA TATATATATATATATATATATATATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	7/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141464606	A A	ATATATAT others(43): Show ATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTT T	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0028 a0001c0028	a0001c0028t0002 a0001c0028t0002	a0001c0028t0002g0020 a0001c0028t0002g0020	1	28	0.0357	50	c.343 others(69): Show c.343+15789_343+15790insAAAAAAAAAAAAAAAAAAAATATATA TATATATATATATATATATATATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141544328	C C	CTTCTTCT others(43): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT T	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0001 a0001c0019t0001	a0001c0019t0001g0016 a0001c0019t0001g0016	1	28	0.0357	50	c.206 others(69): Show c.206-63845_206-63796dupAAGAAGAAGAAGAAGAAGAAGAAGAA GAAGAAGAAGAAGAAGAAGAAGAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP2_chr2_169122109_169367534	169326172	C C	CTCCCTCT others(43): Show CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCTCCCCTC T	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0002 a0002	a0002c0162 a0002c0162	a0002c0162t0003 a0002c0162t0003	a0002c0162t0003g0036 a0002c0162t0003g0036	1	250	0.0040	50	c.80- others(65): Show c.80-5289_80-5288insAGAGGGGAGAGGGGGAGGGAGAGGGAGAGG GAGAGGGAGAGGGAGAGGGA	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(43): Show ATATATATATATATATATATATATATATATATATATATATATATATGTAT G	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01978.hp1 HG00558.hp2 HG01978.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0072 a0002c0002t0001g0300 a0002c0002t0001g0072 a0002c0002t0001g0300	2	420	0.0048	50	c.-77 others(67): Show c.-77-9275_-77-9274insCATACATATATATATATATATATATATA TATATATATATATATATATATA	LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3			chr10	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(43): Show ATATATATATATATATATATATATATATATATATATATATATGTATGTAT G	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02523.hp1 HG02523.hp2 others(2): Show HG02080.hp1 HG02523.hp1 HG02523.hp2 HG03927.hp1 NA19082.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0091 a0001c0001t0001g0094 a0001c0001t0001g0140 others(2): Show a0001c0001t0001g0091 a0001c0001t0001g0094 a0001c0001t0001g0140 a0001c0001t0001g0332 a0002c0002t0001g0090	5	420	0.0119	50	c.-77 others(67): Show c.-77-9275_-77-9274insCATACATACATATATATATATATATATA TATATATATATATATATATATA	LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3			chr10	TogoVar
LRRC36_chr16_67321815_67390204	67340845	C C	CACATATA others(43): Show CACATATACTCTATAGAATATATACCACATATACTCTATAGAATATATAC T	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0117	1	194	0.0052	50	c.71- others(65): Show c.71-1088_71-1087insCACATATACTCTATAGAATATATACTACAT ATACTCTATAGAATATATAC	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LRRC36_chr16_67321815_67390204	67340845	C C	CACATATA others(43): Show CACATATACTCTATAGAATATATACTACATATACTCTATAGAATATATAC T	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	194	0.0052	50	c.71- others(65): Show c.71-1090_71-1041dupTACTACATATACTCTATAGAATATATACTA CATATACTCTATAGAATATA	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATAGAGA others(43): Show TATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	370	0.0027	50	c.-16 others(71): Show c.-160-38139_-160-38138insTAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(43): Show TATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA G	intron_variant intron_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	370	0.0027	50	c.-16 others(71): Show c.-160-38139_-160-38138insTATATAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(43): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0320 a0001c0001t0001g0320	1	370	0.0027	50	c.-16 others(71): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGACA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC40_chr1_70139805_70210579	70187838	G G	GGAAGAGA others(43): Show GGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG A	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18953.hp2 NA18948.hp1 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0219 a0001c0001t0002g0221 a0001c0001t0002g0219 a0001c0001t0002g0221	2	320	0.0063	50	c.334 others(65): Show c.334-550_334-501dupTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC TCTTCTCTTCTCTTCTCTTC	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	2/14			chr1	TogoVar
LRRC4C_chr11_40109209_41464652	41304140	G G	GCCCGGCC others(43): Show GCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCC A	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	48	0.0208	50	c.-49 others(73): Show c.-496+155290_-496+155291insTGGGGGGGCTGACCCCCCCATC TCCCTCCCGGACGGGGTGGCTGGCCGGG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41304150	C C	CCACCCCG others(43): Show CCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAG A	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02809.hp2 HG03225.hp2 others(2): Show HG01074.hp2 HG02809.hp2 HG03225.hp2 HG03579.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0007 a0001c0001t0001g0014 a0001c0001t0001g0037 others(2): Show a0001c0001t0001g0007 a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0047 a0001c0001t0002g0036	5	48	0.1042	50	c.-49 others(73): Show c.-496+155280_-496+155281insTCTGGCCGGGTGGGGGGGCTGA CCCCCCCATCTCCCTCCCGGACGGGGTG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar

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