Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff genename

Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FHOD3_chr18_36292713_36785220	36380563	T T	TTTTCCTT others(44): Show TTTTCCTTTCCTTTCCTTTCCTTTTCCTTTCCTTTCCTTTCCTTTCCTTT CC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG03139.hp2 HG03225.hp1 HG02922.hp1 HG03139.hp2 HG03225.hp1	a0003 a0005 a0024 a0003 a0005 a0024	a0003c0005 a0005c0010 a0024c0039 a0003c0005 a0005c0010 a0024c0039	a0003c0005t0001 a0005c0010t0001 a0024c0039t0001 a0003c0005t0001 a0005c0010t0001 a0024c0039t0001	a0003c0005t0001g0054 a0005c0010t0001g0057 a0024c0039t0001g0055 a0003c0005t0001g0054 a0005c0010t0001g0057 a0024c0039t0001g0055	3	168	0.0179	51	c.337 others(68): Show c.337+7823_337+7824insCTTTCCTTTCCTTTCCTTTTCCTTTCCT TTCCTTTCCTTTCCTTTCCTTTC	FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28		INFO_REALIGN_3_PRIME	chr18	TogoVar
FILIP1_chr6_75303090_75498800	75441670	C C	CGACCTCC others(44): Show CGACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGCTGACCCCCC CG	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0291 a0001c0001t0001g0291	1	306	0.0033	51	c.-6- others(68): Show c.-6-26693_-6-26692insCGGGGGGGTCAGCCCCCTGCCCGGCCAG CCGCCCCGTCCGGGAGGGAGGTC	FILIP1	ENSG00000118407.15	transcript	ENST00000237172.12	protein_coding	1/5			chr6	TogoVar
FKBP2_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(44): Show GAGAGAGAGAGAGAGAGAGACAGAGACAGACAGAGACAGACAGAGACAGA CA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	332	0.0030	51	c.-40 others(62): Show c.-4011_-4010insAGAGAGAGAGAGAGAGAGACAGAGACAGACAGAG ACAGACAGAGACAGACA	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		3968		chr11	TogoVar
FKBP2_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(44): Show GAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGACAGAGACAGA CA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18951.hp2 NA18951.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	332	0.0030	51	c.-40 others(62): Show c.-4011_-4010insAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAG ACAGACAGAGACAGACA	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		3968		chr11	TogoVar
FKBP2_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(44): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGACAGAGACAGA CA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 NA19005.hp2 NA19007.hp1 others(2): Show HG02559.hp1 NA19005.hp2 NA19007.hp1 NA19077.hp1 NA19081.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0002 a0003c0005t0001 a0001c0001t0002 a0003c0005t0001	a0001c0001t0002g0001 a0003c0005t0001g0001 a0001c0001t0002g0001 a0003c0005t0001g0001	5	332	0.0151	51	c.-40 others(62): Show c.-4011_-4010insAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAG ACAGACAGAGACAGACA	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		3968		chr11	TogoVar
FLT1_chr13_28295346_28500128	28453035	T T	TCCCCCTC others(44): Show TCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTC CC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0014 a0001c0002t0001g0014	1	228	0.0044	51	c.388 others(70): Show c.388+13867_388+13868insGGGAGGGGGAGGGGGAGGGGGAGGGG GAGGGGGAGGGGGAGGGGGAGGGGG	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	3/29			chr13	TogoVar
FLT4_chr5_180596506_180654600	180617675	C C	CTCCCAGA others(44): Show CTCCCAGAGCACCCTCTCCTGCCCCTCAACCTCTGGGACACCCACGTCCT AT	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0319 a0001c0001t0001g0319	1	388	0.0026	51	c.300 others(68): Show c.3002-682_3002-681insATAGGACGTGGGTGTCCCAGAGGTTGAG GGGCAGGAGAGGGTGCTCTGGGA	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	21/29			chr5	TogoVar
FLVCR2_chr14_75573620_75653167	75591457	C C	CCATGGCT others(44): Show CCATGGCTTTGCTGGACATAGCCCACATGGCTGTACTCACAGGTTGGAAT CA	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0071 a0002c0002t0002g0071	1	336	0.0030	51	c.669 others(70): Show c.669+11868_669+11918dupCATGGCTTTGCTGGACATAGCCCACA TGGCTGTACTCACAGGTTGGAATCA	FLVCR2	ENSG00000119686.10	transcript	ENST00000238667.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
FMR1_chrX_147906919_147956125	147912049	C C	CGCGGCGG others(44): Show CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG CG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0004 a0001c0001t0076g0004	1	304	0.0033	51	c.-10 others(59): Show c.-100_-99insCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC GGCGGCGGCGGCGG	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	99	INFO_REALIGN_3_PRIME	chrX	TogoVar
FMR1_chrX_147906919_147956125	147912081	A A	AGGCGGCG others(44): Show AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG GC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0180 a0001c0001t0060g0180	1	304	0.0033	51	c.-69 others(58): Show c.-69_-68insGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG CGGCGGCGGCGGC	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	68	INFO_REALIGN_3_PRIME	chrX	TogoVar
FN3K_chr17_82730615_82756196	82751103	T T	TCCCCCGG others(44): Show TCCCCCGGCCCCCCGTCCCCTCCCCCCATCCCTGTCCCCCCGTCCCCCTG TG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp2 HG00733.hp1 HG00738.hp1 others(64): Show HG00280.hp2 HG00733.hp1 HG00738.hp1 HG00741.hp1 HG01070.hp2 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp2 HG01261.hp1 HG01361.hp1 HG01516.hp2 HG02055.hp2 HG02135.hp1 HG02155.hp1 HG02257.hp1 HG02273.hp2 HG02451.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp2 HG02647.hp2 HG02735.hp1 HG02895.hp2 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG03017.hp2 HG03041.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03225.hp2 HG03453.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp2 HG04199.hp2 NA18612.hp2 NA18944.hp1 NA18945.hp1 NA18951.hp2 NA18952.hp2 NA18955.hp2 NA18960.hp1 NA18999.hp2 NA19030.hp2 NA19082.hp2 NA19090.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0016 others(4): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0016 a0001c0001t0017 a0001c0001t0022 a0001c0001t0032 a0001c0001t0041	a0001c0001t0003g0014 a0001c0001t0003g0016 a0001c0001t0003g0022 others(51): Show a0001c0001t0003g0014 a0001c0001t0003g0016 a0001c0001t0003g0022 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0035 a0001c0001t0003g0036 a0001c0001t0003g0048 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0113 a0001c0001t0003g0114 a0001c0001t0003g0115 a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0118 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0127 a0001c0001t0003g0129 a0001c0001t0003g0131 a0001c0001t0003g0133 a0001c0001t0003g0135 a0001c0001t0003g0136 a0001c0001t0003g0137 a0001c0001t0003g0145 a0001c0001t0003g0146 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0189 a0001c0001t0003g0193 a0001c0001t0003g0194 a0001c0001t0003g0195 a0001c0001t0003g0198 a0001c0001t0006g0049 a0001c0001t0006g0101 a0001c0001t0006g0185 a0001c0001t0006g0186 a0001c0001t0006g0190 a0001c0001t0006g0191 a0001c0001t0006g0192 a0001c0001t0006g0196 a0001c0001t0006g0199 a0001c0001t0016g0188 a0001c0001t0016g0197 a0001c0001t0017g0014 a0001c0001t0017g0132 a0001c0001t0022g0049 a0001c0001t0032g0214 a0001c0001t0041g0112	67	402	0.1667	51	c.35 others(60): Show c.354_*355insGCCCCCCGTCCCCTCCCCCCATCCCTGTCCCCCCGT CCCCCTGTGCCCCCG	FN3K	ENSG00000167363.14	transcript	ENST00000300784.8	protein_coding	6/6	355	INFO_REALIGN_3_PRIME	chr17	TogoVar
FNDC3B_chr3_172034578_172406669	172174933	A A	ACACCCCC others(44): Show ACACCCCCCCCCCCCCCCCCCCACCTTCCCCCCGCCACCCCCCCCCCCCC CC	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0015 a0002c0003t0003g0015	1	196	0.0051	51	c.187 others(70): Show c.187+41388_187+41389insACCCCCCCCCCCCCCCCCCCACCTTC CCCCCGCCACCCCCCCCCCCCCCCC	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FOLR3_chr11_72130725_72144892	72133601	T T	TTCTCCTT others(44): Show TTCTCCTTCTTCTTCTTCTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTT CC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0003 a0002c0008t0001g0003	1	384	0.0026	51	c.-21 others(62): Show c.-2174_-2173insTCTCCTTCTTCTTCTTCTTCTCCTCCTCCTTCTT CTTCTTCTTCTTCTTCC	FOLR3	ENSG00000110203.10	transcript	ENST00000611028.3	protein_coding		2123		chr11	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(44): Show GGAGAGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	51	c.-61 others(60): Show c.-610_-609insGAGAGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXJ3_chr1_42171548_42340235	42221999	G G	GGGAGGGG others(44): Show GGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAG GA	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0016 a0001c0005t0001g0016	1	332	0.0030	51	c.528 others(68): Show c.528+5883_528+5884insTCCTCCTCCCCCTCCCCCTCCCCCTCCC CCTCCCCCTCCCCCTCCCCCTCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42222031	G G	GAGGGGGA others(44): Show GAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGA GA	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0308 a0001c0001t0001g0308	1	332	0.0030	51	c.528 others(68): Show c.528+5851_528+5852insTCTCCCCCTCCCCCTCCCCCTCCCCCTC CCCCTCCCCCTCCCCCTCCCCCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42222032	A A	AGGGGGAG others(44): Show AGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAG GG	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0307 a0001c0001t0001g0307	1	332	0.0030	51	c.528 others(68): Show c.528+5850_528+5851insCCCTCCCCCTCCCCCTCCCCCTCCCCCT CCCCCTCCCCCTCCCCCTCCCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXK2_chr17_82514732_82609602	82593155	C C	CAGGCTCT others(44): Show CAGGCTCTTATTCTGAAAGCAGACCCAGTGAAGGTCTCCCTGTGCCAGGC AG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01168.hp1 HG03516.hp2 HG00733.hp2 HG01168.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0030 a0001c0001t0026 a0001c0001t0030	a0001c0001t0026g0080 a0001c0001t0026g0121 a0001c0001t0030g0226 a0001c0001t0026g0080 a0001c0001t0026g0121 a0001c0001t0030g0226	3	308	0.0097	51	c.178 others(70): Show c.1786+5960_1786+6010dupAGTGAAGGTCTCCCTGTGCCAGGCAG AGGCTCTTATTCTGAAAGCAGACCC	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr17	TogoVar
FOXN3_chr14_89151177_89422233	89360774	T T	TCCAGCAC others(44): Show TCCAGCACCACCTCCACCACCACCTCCACCACCACCACCTCCAGCACCAC CA	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0087 a0001c0001t0004g0087	1	230	0.0044	51	c.544 others(68): Show c.544-9967_544-9966insTGGTGGTGCTGGAGGTGGTGGTGGTGGA GGTGGTGGTGGAGGTGGTGCTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360891	A A	ACCACTAC others(44): Show ACCACTACCACCTCCAGCACTACCTCCACCACCACCACCTCCACCACCAC CT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0104 a0001c0001t0002g0104	1	230	0.0044	51	c.544 others(70): Show c.544-10084_544-10083insAGGTGGTGGTGGAGGTGGTGGTGGTG GAGGTAGTGCTGGAGGTGGTAGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360903	T T	TCCAGCAC others(44): Show TCCAGCACCACCACCACCACCACCACCTCCACCACCACCACCTCCAGCAC CA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0082 a0001c0001t0082	a0001c0001t0082g0065 a0001c0001t0082g0065	1	230	0.0044	51	c.544 others(70): Show c.544-10096_544-10095insTGGTGCTGGAGGTGGTGGTGGTGGAG GTGGTGGTGGTGGTGGTGGTGCTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360938	C C	CACCTCCA others(44): Show CACCTCCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCCACCA CT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0090 a0001c0001t0024g0090	1	230	0.0044	51	c.544 others(70): Show c.544-10131_544-10130insAGTGGTGGAGGTGGTGGTGGAGGTGG TGCTGGAGGTGGTGGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361084	C C	CCACCTCC others(44): Show CCACCTCCAGCACCACCTCCACCACCACCACCTCCAGCACCACCACCACC AG	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0019 a0001c0001t0009g0019	1	230	0.0044	51	c.544 others(70): Show c.544-10277_544-10276insCTGGTGGTGGTGGTGCTGGAGGTGGT GGTGGTGGAGGTGGTGCTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361414	C C	CTACCACC others(44): Show CTACCACCTCCAGCACCACCTCCACCACCACCTCCACCACTACCACCTCC AG	intron_variant intron_variant	MODIFIER	HG02273.hp2 HG02273.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0144 a0001c0001t0007g0144	1	230	0.0044	51	c.544 others(70): Show c.544-10607_544-10606insCTGGAGGTGGTAGTGGTGGAGGTGGT GGTGGAGGTGGTGCTGGAGGTGGTA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361559	C C	CCACCACC others(44): Show CCACCACCTCCACCACCACCTCCACCACCACCTCCACCACTACCACCTCC AG	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0089 a0001c0001t0008g0089	1	230	0.0044	51	c.544 others(70): Show c.544-10752_544-10751insCTGGAGGTGGTAGTGGTGGAGGTGGT GGTGGAGGTGGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361587	T T	TACCACCT others(44): Show TACCACCTCCACCACTACCACCTCCAGCACCACCTCCACCACCACCTCCA CC	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	230	0.0044	51	c.544 others(70): Show c.544-10780_544-10779insGGTGGAGGTGGTGGTGGAGGTGGTGC TGGAGGTGGTAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361665	C C	CACCACCA others(44): Show CACCACCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCCACCA CT	intron_variant intron_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0148 a0001c0001t0009g0148	1	230	0.0044	51	c.544 others(70): Show c.544-10858_544-10857insAGTGGTGGAGGTGGTGGTGGAGGTGG TGCTGGAGGTGGTGGTGGTGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361942	A A	ACCACCAC others(44): Show ACCACCACCTCCACCACCACCTCCACCACTACCACCTCCACCACCACCAC CT	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0028 a0001c0001t0055g0028	1	230	0.0044	51	c.544 others(70): Show c.544-11135_544-11134insAGGTGGTGGTGGTGGAGGTGGTAGTG GTGGAGGTGGTGGTGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361970	C C	CCACCACC others(44): Show CCACCACCTCCACCACCACCACCACCACCACCACCTCCAGCACCACCTCC AG	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0225 a0001c0001t0001g0225	1	230	0.0044	51	c.544 others(70): Show c.544-11163_544-11162insCTGGAGGTGGTGCTGGAGGTGGTGGT GGTGGTGGTGGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362039	C C	CCACCTCC others(44): Show CCACCTCCACCACTACCACCTCCAGCACTACCTCCACCACCACCACCTCC AG	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0080 a0001c0001t0080	a0001c0001t0080g0154 a0001c0001t0080g0154	1	230	0.0044	51	c.544 others(70): Show c.544-11232_544-11231insCTGGAGGTGGTGGTGGTGGAGGTAGT GCTGGAGGTGGTAGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362067	T T	TACCACCT others(44): Show TACCACCTCCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCCA GC	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0200 a0001c0001t0027g0200	1	230	0.0044	51	c.544 others(70): Show c.544-11260_544-11259insGCTGGAGGTGGTGGTGGAGGTGGTGC TGGAGGTGGTGGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362210	G G	GCACTACC others(44): Show GCACTACCTCCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCC AC	intron_variant intron_variant	MODIFIER	NA18980.hp2 NA18980.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0149 a0001c0001t0004g0149	1	230	0.0044	51	c.544 others(70): Show c.544-11403_544-11402insGTGGAGGTGGTGGTGGAGGTGGTGCT GGAGGTGGTGGTGGTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FRK_chr6_115926149_116065891	115958644	A A	AAAGAAAG others(44): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA AG	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02886.hp1 HG02004.hp2 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0003 a0001c0009t0012 a0001c0001t0003 a0001c0009t0012	a0001c0001t0003g0239 a0001c0009t0012g0120 a0001c0001t0003g0239 a0001c0009t0012g0120	2	274	0.0073	51	c.800 others(68): Show c.800-2035_800-2034insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTTTCTTTCTTTCTT	FRK	ENSG00000111816.8	transcript	ENST00000606080.2	protein_coding	4/7			chr6	TogoVar
FRMD3_chr9_83239622_83543401	83407847	C C	CTCTCTCT others(44): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATC TT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG03491.hp1 HG00558.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0202 a0001c0001t0001g0234 a0001c0001t0001g0202 a0001c0001t0001g0234	2	242	0.0083	51	c.148 others(70): Show c.148-18140_148-18139insAAGATGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	1/13			chr9	TogoVar
FRMD4A_chr10_13638706_14335924	13714019	A A	AATATACA others(44): Show AATATACATATATAAAATATACATATATATAAAATATATATTTTATATAT AT	intron_variant intron_variant	MODIFIER	HG02148.hp1 NA19009.hp2 HG02148.hp1 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0002t0007 a0001c0001t0005 a0001c0002t0007	a0001c0001t0005g0109 a0001c0002t0007g0126 a0001c0001t0005g0109 a0001c0002t0007g0126	2	134	0.0149	51	c.760 others(68): Show c.760-6907_760-6906insATATATATAAAATATATATTTTATATAT ATGTATATTTTATATATGTATAT	FRMD4A	ENSG00000151474.23	transcript	ENST00000357447.7	protein_coding	12/24			chr10	TogoVar
FRMD5_chr15_43865764_44200271	43999953	C C	CATATATA others(44): Show CATATATATATATATATATATATATATATATATATATATATGCCATGCAT AT	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0038 a0001c0001t0003g0038	1	146	0.0069	51	c.103 others(70): Show c.103-75645_103-75644insATATGCATGGCATATATATATATATA TATATATATATATATATATATATAT	FRMD5	ENSG00000171877.21	transcript	ENST00000417257.6	protein_coding	1/13			chr15	TogoVar
GAB2_chr11_78210293_78422820	78407651	A A	AAGTAAGT others(44): Show AAGTAAGTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATG GC	intron_variant intron_variant	MODIFIER	NA18981.hp2 NA18981.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0069 a0001c0002t0002g0069	1	288	0.0035	51	c.75+ others(66): Show c.75+9994_75+9995insGCCATCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTACTTACT	GAB2	ENSG00000033327.13	transcript	ENST00000361507.5	protein_coding	1/9			chr11	TogoVar
GABPB1_chr15_50270389_50360198	50340887	C C	CATATGGT others(44): Show CATATGGTTTATTACCATATGTAATATTACATATGGTTTATTACCATATG TA	intron_variant intron_variant	MODIFIER	HG03225.hp1 NA19054.hp1 HG03225.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0074 a0001c0001t0002g0012 a0001c0001t0002g0074	2	366	0.0055	51	c.-1+ others(68): Show c.-1+14097_-1+14098insTACATATGGTAATAAACCATATGTAATA TTACATATGGTAATAAACCATAT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding	1/8			chr15	TogoVar
GABPB1_chr15_50270389_50360198	50340959	C C	CATATGGT others(44): Show CATATGGTTTATTACCATATGTAATATTACATATGGTTTATTACCATATG TA	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0116 a0001c0001t0003g0116	1	366	0.0027	51	c.-1+ others(68): Show c.-1+14025_-1+14026insTACATATGGTAATAAACCATATGTAATA TTACATATGGTAATAAACCATAT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding	1/8			chr15	TogoVar
GABPB1_chr15_50270389_50360198	50340995	C C	CATATGGT others(44): Show CATATGGTTTATTACCATATGTAATATTACATATGGTTTATTACCATATG TA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0119 a0001c0001t0007g0119	1	366	0.0027	51	c.-1+ others(68): Show c.-1+13989_-1+13990insTACATATGGTAATAAACCATATGTAATA TTACATATGGTAATAAACCATAT	GABPB1	ENSG00000104064.18	transcript	ENST00000380877.8	protein_coding	1/8			chr15	TogoVar
GAK_chr4_844277_937316	846417	A A	AGTCACAC others(44): Show AGTCACACCAGCAGCTCACCCCTCTCCATGCTGAGCAGGACCCCGTGGCG CC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0169 a0002c0003t0001g0169	1	390	0.0026	51	c.32 others(62): Show c.3255_*3256insGGCGCCACGGGGTCCTGCTCAGCATGGAGAGGGG TGAGCTGCTGGTGTGAC	GAK	ENSG00000178950.18	transcript	ENST00000314167.9	protein_coding		2859		chr4	TogoVar
GAK_chr4_844277_937316	846495	A A	ATGCTGAG others(44): Show ATGCTGAGCAGGACCCCGTGGCGCCGTCACACCAGCAGCTCACCCCTCTC CG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00323.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0339 a0001c0001t0001g0339	1	390	0.0026	51	c.31 others(62): Show c.3177_*3178insCGGAGAGGGGTGAGCTGCTGGTGTGACGGCGCCA CGGGGTCCTGCTCAGCA	GAK	ENSG00000178950.18	transcript	ENST00000314167.9	protein_coding		2781		chr4	TogoVar
GALNT16_chr14_69255158_69359466	69342498	G G	GAGGGAGG others(44): Show GAGGGAGGGAAGGTGGAAGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAG GC	intron_variant intron_variant	MODIFIER	NA18989.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0127 a0001c0001t0001g0127	1	306	0.0033	51	c.127 others(68): Show c.1271+743_1271+744insAGGTGGAAGAAGGAAGGAAGGGAGGGAG GGAGGGAGGGAGGCAGGGAGGGA	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	12/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT9_chr12_132191372_132334589	132192194	G G	GGTCGTCG others(44): Show GGTCGTCGGGCTGGGGGAGTGCCTGCACCCGTACTGGCTGCTCCGAGCCC CT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0025 a0001c0025	a0001c0025t0012 a0001c0025t0012	a0001c0025t0012g0048 a0001c0025t0012g0048	1	183	0.0055	51	c.49 others(62): Show c.4912_*4913insAGGGGCTCGGAGCAGCCAGTACGGGTGCAGGCAC TCCCCCAGCCCGACGAC	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding		4177		chr12	TogoVar
GALNT9_chr12_132191372_132334589	132244630	C C	CGGGGGCG others(44): Show CGGGGGCGTGGTGATGGGGCTGGACGGGGGCGTGGTGATGGGGGCTGGAC GG	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02723.hp1 HG02809.hp2 others(3): Show HG02717.hp1 HG02723.hp1 HG02809.hp2 HG02895.hp2 HG03225.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0016 others(1): Show a0001c0001 a0001c0006 a0001c0016 a0001c0026	a0001c0001t0001 a0001c0006t0001 a0001c0016t0001 others(1): Show a0001c0001t0001 a0001c0006t0001 a0001c0016t0001 a0001c0026t0014	a0001c0001t0001g0149 a0001c0006t0001g0073 a0001c0006t0001g0078 others(3): Show a0001c0001t0001g0149 a0001c0006t0001g0073 a0001c0006t0001g0078 a0001c0006t0001g0142 a0001c0016t0001g0147 a0001c0026t0014g0052	6	183	0.0328	51	c.107 others(70): Show c.1077+3279_1077+3280insCCGTCCAGCCCCCATCACCACGCCCC CGTCCAGCCCCATCACCACGCCCCC	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNTL6_chr4_171808404_173046559	172069576	T T	TTATATAT others(44): Show TTATATATATTATATATATAACACATGTGTTATATATAACACATATGTGT TA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02965.hp2 HG03139.hp2 HG02630.hp1 HG02965.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0008g0010 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0008g0010	3	40	0.0750	51	c.139 others(72): Show c.139-160073_139-160072insATTATATATATAACACATGTGTTA TATATAACACATATGTGTTATATATAT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GARNL3_chr9_127259774_127398660	127391533	A A	AAAAAAAA others(44): Show AAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATAT AT	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0102 a0001c0001t0001g0102	1	300	0.0033	51	c.287 others(68): Show c.2870+767_2870+768insAAAAAAAAAAAAAAAAAAAAAAATATAT ATATATATATATATATATATATA	GARNL3	ENSG00000136895.19	transcript	ENST00000373387.9	protein_coding	27/27		INFO_REALIGN_3_PRIME	chr9	TogoVar
GARNL3_chr9_127259774_127398660	127391533	A A	AAAAAAAA others(44): Show AAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATAT AT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	300	0.0033	51	c.287 others(68): Show c.2870+767_2870+768insAAAAAAAAAAAAAAAAAAAAATATATAT ATATATATATATATATATATATA	GARNL3	ENSG00000136895.19	transcript	ENST00000373387.9	protein_coding	27/27		INFO_REALIGN_3_PRIME	chr9	TogoVar
GARNL3_chr9_127259774_127398660	127391533	A A	AAAAAAAA others(44): Show AAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATAT AT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	300	0.0033	51	c.287 others(68): Show c.2870+767_2870+768insAAAAAAAAAAAAAAAAAAATATATATAT ATATATATATATATATATATATA	GARNL3	ENSG00000136895.19	transcript	ENST00000373387.9	protein_coding	27/27		INFO_REALIGN_3_PRIME	chr9	TogoVar
GAS6_chr13_113815549_113869076	113836384	G G	GGGAGGGG others(44): Show GGGAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAG GA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00639.hp2 HG01099.hp2 others(18): Show HG00423.hp2 HG00639.hp2 HG01099.hp2 HG02015.hp1 HG02132.hp2 HG02809.hp1 HG02922.hp2 HG03017.hp1 HG03017.hp2 HG03195.hp1 HG03225.hp2 HG03453.hp2 HG03492.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 NA18971.hp2 NA19058.hp1 NA19064.hp2 NA19091.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0001t0001 a0001c0002t0001 a0001c0003t0001	a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0019 others(18): Show a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0025 a0001c0001t0001g0030 a0001c0001t0001g0046 a0001c0001t0001g0052 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0002t0001g0018 a0001c0002t0001g0139 a0001c0003t0001g0005 a0001c0003t0001g0023 a0001c0003t0001g0028 a0001c0003t0001g0037 a0001c0003t0001g0044 a0001c0003t0001g0045 a0001c0003t0001g0047	21	143	0.1469	51	c.590 others(66): Show c.590-750_590-749insTCCTCCCCCTCCTCCTCCTCCCCCTCCTCC TCCTCCCCCTCCTCCCCCTCC	GAS6	ENSG00000183087.15	transcript	ENST00000327773.7	protein_coding	6/14			chr13	TogoVar

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