Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GNG2_chr14_51855612_51974795	51942590	T T	TTTCTTTC others(4): Show TTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0200 a0001c0001t0004g0200	1	380	0.0026	11	c.-29 others(28): Show c.-29-8058_-29-8057insCTTTCTTTCTT	GNG2	ENSG00000186469.9	transcript	ENST00000556766.6	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr14	TogoVar
GNG2_chr14_51855612_51974795	51966227	A A	AAAAAAAA others(4): Show AAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0073 a0001c0002t0073	a0001c0002t0073g0198 a0001c0002t0073g0198	1	380	0.0026	11	c.88- others(24): Show c.88-328_88-318dupAAAAAAACAAA	GNG2	ENSG00000186469.9	transcript	ENST00000556766.6	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr14	TogoVar
GNG4_chr1_235542685_235654784	235579862	A A	AAAAAAAA others(4): Show AAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0022 a0001c0001t0004g0023 a0001c0001t0004g0022 a0001c0001t0004g0023	2	330	0.0061	11	c.99+ others(26): Show c.99+3877_99+3878insATTTTTTTTTT	GNG4	ENSG00000168243.11	transcript	ENST00000391854.7	protein_coding	3/3			chr1	TogoVar
GNG4_chr1_235542685_235654784	235600100	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01243.hp2 HG01891.hp2 others(4): Show HG01109.hp2 HG01243.hp2 HG01891.hp2 HG02486.hp1 HG03195.hp1 NA19030.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0001t0019 a0001c0001t0025 others(3): Show a0001c0001t0006 a0001c0001t0019 a0001c0001t0025 a0001c0001t0026 a0001c0001t0085 a0001c0002t0060	a0001c0001t0006g0100 a0001c0001t0019g0004 a0001c0001t0019g0013 others(4): Show a0001c0001t0006g0100 a0001c0001t0019g0004 a0001c0001t0019g0013 a0001c0001t0025g0260 a0001c0001t0026g0247 a0001c0001t0085g0251 a0001c0002t0060g0093	7	330	0.0212	11	c.-12 others(30): Show c.-122-4600_-122-4590dupAAAAAAAAAAA	GNG4	ENSG00000168243.11	transcript	ENST00000391854.7	protein_coding	1/3			chr1	TogoVar
GNG4_chr1_235542685_235654784	235600129	T T	TTTTTTTT others(4): Show TTTTTTTTTTTA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0185 a0001c0002t0006g0185	1	330	0.0030	11	c.-12 others(30): Show c.-122-4619_-122-4618insTAAAAAAAAAA	GNG4	ENSG00000168243.11	transcript	ENST00000391854.7	protein_coding	1/3			chr1	TogoVar
GNG4_chr1_235542685_235654784	235622873	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01884.hp1 HG01891.hp1 others(17): Show HG01106.hp1 HG01884.hp1 HG01891.hp1 HG01952.hp2 HG02280.hp1 HG02559.hp2 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02717.hp1 HG02809.hp2 HG02922.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp1 HG03453.hp1 HG03579.hp1 HG06807.hp2 NA18522.hp2 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 others(12): Show a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0001c0001t0019 a0001c0001t0024 a0001c0001t0040 a0001c0001t0081 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0025 a0001c0002t0027 a0001c0002t0031 a0001c0002t0046 a0001c0002t0054	a0001c0001t0008g0265 a0001c0001t0012g0259 a0001c0001t0014g0014 others(17): Show a0001c0001t0008g0265 a0001c0001t0012g0259 a0001c0001t0014g0014 a0001c0001t0014g0253 a0001c0001t0019g0004 a0001c0001t0024g0005 a0001c0001t0040g0324 a0001c0001t0081g0240 a0001c0002t0002g0130 a0001c0002t0003g0020 a0001c0002t0003g0092 a0001c0002t0003g0102 a0001c0002t0003g0188 a0001c0002t0004g0135 a0001c0002t0004g0252 a0001c0002t0025g0019 a0001c0002t0027g0314 a0001c0002t0031g0006 a0001c0002t0046g0015 a0001c0002t0054g0103	20	330	0.0606	11	c.-12 others(32): Show c.-123+26778_-123+26788dupTTTTTTTTTTT	GNG4	ENSG00000168243.11	transcript	ENST00000391854.7	protein_coding	1/3			chr1	TogoVar
GNG7_chr19_2506219_2707694	2510673	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00408.hp1 HG01070.hp1 others(42): Show HG00323.hp2 HG00408.hp1 HG01070.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01167.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01934.hp1 HG01943.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02132.hp2 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02451.hp1 HG02559.hp2 HG02698.hp1 HG02735.hp2 HG02818.hp2 HG02886.hp2 HG03130.hp1 HG03490.hp1 HG04115.hp1 NA18952.hp1 NA18952.hp2 NA18963.hp1 NA18963.hp2 NA18970.hp1 NA18971.hp2 NA18999.hp1 NA19000.hp2 NA19011.hp1 NA19067.hp1 NA19068.hp1 NA19079.hp2 NA19082.hp1 NA20129.hp1 NA20300.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0015 a0001c0001t0016 a0001c0001t0021 a0001c0001t0031 a0001c0001t0038 a0001c0001t0041 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0056 a0001c0001t0068 a0001c0001t0073 a0001c0001t0085 a0001c0001t0096	a0001c0001t0001g0090 a0001c0001t0001g0166 a0001c0001t0002g0062 others(42): Show a0001c0001t0001g0090 a0001c0001t0001g0166 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0067 a0001c0001t0002g0070 a0001c0001t0002g0086 a0001c0001t0002g0091 a0001c0001t0002g0093 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0153 a0001c0001t0002g0154 a0001c0001t0002g0198 a0001c0001t0002g0206 a0001c0001t0003g0114 a0001c0001t0003g0148 a0001c0001t0003g0192 a0001c0001t0003g0199 a0001c0001t0004g0078 a0001c0001t0004g0094 a0001c0001t0009g0142 a0001c0001t0010g0106 a0001c0001t0010g0123 a0001c0001t0010g0146 a0001c0001t0012g0050 a0001c0001t0012g0133 a0001c0001t0015g0168 a0001c0001t0015g0169 a0001c0001t0016g0077 a0001c0001t0016g0082 a0001c0001t0021g0047 a0001c0001t0021g0048 a0001c0001t0031g0175 a0001c0001t0038g0065 a0001c0001t0041g0129 a0001c0001t0043g0162 a0001c0001t0044g0188 a0001c0001t0045g0004 a0001c0001t0056g0156 a0001c0001t0068g0143 a0001c0001t0073g0185 a0001c0001t0085g0167 a0001c0001t0096g0028	45	206	0.2185	11	c.43 others(22): Show c.4348_*4349insAAAAAAAAAAA	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding		545		chr19	TogoVar
GNG7_chr19_2506219_2707694	2525971	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02922.hp1 HG03139.hp1 others(1): Show HG02280.hp2 HG02922.hp1 HG03139.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0034 a0001c0001t0017 a0001c0001t0034	a0001c0001t0017g0025 a0001c0001t0017g0042 a0001c0001t0017g0173 others(1): Show a0001c0001t0017g0025 a0001c0001t0017g0042 a0001c0001t0017g0173 a0001c0001t0034g0036	4	206	0.0194	11	c.-37 others(28): Show c.-37-5257_-37-5247dupAAAAAAAAAAA	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	3/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2589371	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02965.hp1 HG03471.hp2 others(1): Show HG01175.hp1 HG02965.hp1 HG03471.hp2 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0019 others(1): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0019 a0001c0001t0077	a0001c0001t0002g0206 a0001c0001t0006g0108 a0001c0001t0019g0132 others(1): Show a0001c0001t0002g0206 a0001c0001t0006g0108 a0001c0001t0019g0132 a0001c0001t0077g0200	4	206	0.0194	11	c.-77 others(30): Show c.-77-34194_-77-34184dupAAAAAAAAAAA	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2612706	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0022 a0001c0001t0013g0022	1	206	0.0049	11	c.-78 others(30): Show c.-78+33517_-78+33518insAAAAAAAAAAA	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2633487	G G	GCCACACA others(4): Show GCCACACACACA	intron_variant intron_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0062 a0001c0001t0062	a0001c0001t0062g0152 a0001c0001t0062g0152	1	206	0.0049	11	c.-78 others(30): Show c.-78+12736_-78+12737insTGTGTGTGTGG	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2637723	C C	CCGTCCTG others(4): Show CCGTCCTGGGCA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0090 a0001c0001t0090	a0001c0001t0090g0043 a0001c0001t0090g0043	1	206	0.0049	11	c.-78 others(28): Show c.-78+8490_-78+8500dupTGCCCAGGACG	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2638435	A A	AAGGGGAG others(4): Show AAGGGGAGGGGG	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02074.hp1 NA18970.hp2 others(1): Show HG02040.hp1 HG02074.hp1 NA18970.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0015 a0001c0001t0001 a0001c0001t0005 a0001c0001t0015	a0001c0001t0001g0074 a0001c0001t0001g0096 a0001c0001t0005g0061 others(1): Show a0001c0001t0001g0074 a0001c0001t0001g0096 a0001c0001t0005g0061 a0001c0001t0015g0079	4	206	0.0194	11	c.-78 others(28): Show c.-78+7778_-78+7788dupCCCCCTCCCCT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2638462	A A	AAAGGGGA others(4): Show AAAGGGGAGGGG	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0027 a0001c0001t0014g0027	1	206	0.0049	11	c.-78 others(28): Show c.-78+7751_-78+7761dupCCCCTCCCCTT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2644327	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0094 a0001c0001t0094	a0001c0001t0094g0189 a0001c0001t0094g0189	1	206	0.0049	11	c.-78 others(28): Show c.-78+1896_-78+1897insTATATATATAT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	2/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2657361	A A	AAAAAAAA others(4): Show AAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0012 a0001c0001t0035g0012	1	206	0.0049	11	c.-13 others(32): Show c.-134-11082_-134-11081insATTTTTTTTTT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	1/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2657361	A A	AAATATAT others(4): Show AAATATATATAT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp2 HG01261.hp1 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0040 a0001c0001t0011 a0001c0001t0040	a0001c0001t0011g0126 a0001c0001t0040g0099 a0001c0001t0011g0126 a0001c0001t0040g0099	2	206	0.0097	11	c.-13 others(32): Show c.-134-11082_-134-11081insATATATATATT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	1/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2659592	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0023 a0001c0001t0060g0023	1	206	0.0049	11	c.-13 others(32): Show c.-134-13323_-134-13313dupTTTTTTTTTTT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	1/4			chr19	TogoVar
GNG7_chr19_2506219_2707694	2659610	A A	AAAAAAAA others(4): Show AAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02922.hp2 NA19079.hp2 HG02922.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0103 a0001c0001t0013g0161 a0001c0001t0002g0103 a0001c0001t0013g0161	2	206	0.0097	11	c.-13 others(32): Show c.-134-13331_-134-13330insCTTTTTTTTTT	GNG7	ENSG00000176533.13	transcript	ENST00000382159.8	protein_coding	1/4			chr19	TogoVar
GNG8_chr19_46628953_46641202	46630329	C C	CTCTCTCT others(4): Show CTCTCTCTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0002 a0001c0002t0001g0002	1	438	0.0023	11	c.37 others(22): Show c.3746_*3747insAAAAAGAGAGA	GNG8	ENSG00000167414.5	transcript	ENST00000693335.1	protein_coding		3623		chr19	TogoVar
GNL3L_chrX_54525219_54572289	54530148	G G	GCCCCCCC others(4): Show GCCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01256.hp1 HG01069.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0017 a0001c0001t0008 a0001c0001t0017	a0001c0001t0008g0070 a0001c0001t0017g0001 a0001c0001t0008g0070 a0001c0001t0017g0001	2	277	0.0072	11	c.-31 others(20): Show c.-319_-318insCCCCCCCCCCC	GNL3L	ENSG00000130119.17	transcript	ENST00000360845.3	protein_coding		70		chrX	TogoVar
GNLY_chr2_85689358_85703852	85691493	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG01168.hp1 HG01169.hp2 others(12): Show HG00099.hp1 HG01168.hp1 HG01169.hp2 HG01496.hp2 HG02109.hp1 HG02257.hp2 HG02647.hp2 HG02809.hp2 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG03209.hp2 HG03471.hp1 HG03540.hp1 NA19060.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0009 a0001c0001 a0008c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0008c0009t0001	a0001c0001t0001g0008 a0001c0001t0002g0001 a0001c0001t0003g0009 others(3): Show a0001c0001t0001g0008 a0001c0001t0002g0001 a0001c0001t0003g0009 a0001c0001t0003g0012 a0001c0001t0007g0012 a0008c0009t0001g0008	15	398	0.0377	11	c.-29 others(22): Show c.-2926_-2925insAAAAAAAAAAA	GNLY	ENSG00000115523.17	transcript	ENST00000263863.9	protein_coding		2864		chr2	TogoVar
GNPDA1_chr5_141995671_142018027	142017445	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19066.hp2 NA19066.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0010 a0001c0002t0001g0010	1	423	0.0024	11	c.-44 others(22): Show c.-4458_-4457insTTTTTTTTTTT	GNPDA1	ENSG00000113552.16	transcript	ENST00000311337.11	protein_coding		4419		chr5	TogoVar
GNPNAT1_chr14_52770193_52796607	52793780	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 HG02630.hp2 HG03225.hp2 HG02280.hp1 HG02630.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0013 a0001c0001t0006 a0001c0001t0013	a0001c0001t0006g0118 a0001c0001t0006g0119 a0001c0001t0013g0120 a0001c0001t0006g0118 a0001c0001t0006g0119 a0001c0001t0013g0120	3	390	0.0077	11	c.-23 others(22): Show c.-2368_-2367insAAAAAAAAAAA	GNPNAT1	ENSG00000100522.10	transcript	ENST00000216410.8	protein_coding		2174		chr14	TogoVar
GNPTAB_chr12_101740499_101835959	101824433	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG04184.hp2 NA18747.hp2 HG04184.hp2 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0024 a0001c0001 a0001c0024	a0001c0001t0004 a0001c0024t0004 a0001c0001t0004 a0001c0024t0004	a0001c0001t0004g0234 a0001c0024t0004g0269 a0001c0001t0004g0234 a0001c0024t0004g0269	2	392	0.0051	11	c.117 others(28): Show c.117+6125_117+6126insTATATATATAT	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding	1/20			chr12	TogoVar
GNPTAB_chr12_101740499_101835959	101833178	A A	ATATATAT others(4): Show ATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0279 a0001c0001t0007g0279	1	392	0.0026	11	c.-25 others(22): Show c.-2504_-2503insATATATATATA	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding		2220		chr12	TogoVar
GNPTAB_chr12_101740499_101835959	101833180	A A	ATATATAT others(4): Show ATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02683.hp1 NA18612.hp2 HG02683.hp1 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0298 a0001c0001t0001g0353 a0001c0001t0001g0298 a0001c0001t0001g0353	2	392	0.0051	11	c.-25 others(22): Show c.-2506_-2505insATATATATATA	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding		2222		chr12	TogoVar
GNPTAB_chr12_101740499_101835959	101833182	A A	AAATATAT others(4): Show AAATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0228 a0001c0001t0006g0228	1	392	0.0026	11	c.-25 others(22): Show c.-2508_-2507insATATATATATT	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding		2224		chr12	TogoVar
GNPTG_chr16_1346931_1369113	1354585	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG02622.hp1 HG02647.hp1 others(5): Show HG00639.hp1 HG02622.hp1 HG02647.hp1 HG02647.hp2 NA18945.hp2 NA18970.hp2 NA18979.hp1 NA20129.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0009 a0001c0001 a0007c0009	a0001c0001t0001 a0001c0001t0003 a0007c0009t0001 a0001c0001t0001 a0001c0001t0003 a0007c0009t0001	a0001c0001t0001g0114 a0001c0001t0001g0150 a0001c0001t0001g0167 others(4): Show a0001c0001t0001g0114 a0001c0001t0001g0150 a0001c0001t0001g0167 a0001c0001t0003g0037 a0001c0001t0003g0112 a0001c0001t0003g0113 a0007c0009t0001g0189	8	378	0.0212	11	c.178 others(28): Show c.178+2293_178+2303dupAAAAAAAAAAA	GNPTG	ENSG00000090581.11	transcript	ENST00000204679.9	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr16	TogoVar
GNRH1_chr8_25414258_25429261	25414909	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG01070.hp1 HG01074.hp2 others(57): Show HG00673.hp2 HG01070.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp2 HG01192.hp1 HG01243.hp1 HG01256.hp1 HG01257.hp2 HG01517.hp1 HG01993.hp2 HG02004.hp2 HG02135.hp1 HG02155.hp1 HG02293.hp2 HG02486.hp1 HG02572.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03098.hp2 HG03209.hp2 HG03453.hp1 HG03490.hp1 HG03490.hp2 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03942.hp2 HG04204.hp1 NA18939.hp1 NA18941.hp2 NA18946.hp2 NA18950.hp2 NA18952.hp2 NA18956.hp1 NA18956.hp2 NA18962.hp1 NA18962.hp2 NA18975.hp1 NA18980.hp1 NA18982.hp2 NA18987.hp1 NA19001.hp1 NA19005.hp1 NA19007.hp2 NA19009.hp2 NA19011.hp2 NA19057.hp1 NA19058.hp1 NA19058.hp2 NA19067.hp1 NA19070.hp2 NA19077.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19087.hp2 NA19090.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 others(5): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0031 a0001c0001t0001g0034 a0002c0002t0001g0002 a0002c0002t0001g0005	60	398	0.1508	11	c.44 others(22): Show c.4499_*4509dupAAAAAAAAAAA	GNRH1	ENSG00000147437.10	transcript	ENST00000421054.7	protein_coding		4348		chr8	TogoVar
GNS_chr12_64708449_64764406	64732153	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03491.hp1 HG04228.hp1 others(2): Show HG03195.hp1 HG03491.hp1 HG04228.hp1 NA18906.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0004t0005 a0001c0001t0001 a0001c0001t0003 a0001c0004t0005	a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0003g0303 others(2): Show a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0003g0303 a0001c0004t0005g0119 a0001c0004t0005g0124	5	352	0.0142	11	c.109 others(30): Show c.1099-3107_1099-3097dupAAAAAAAAAAA	GNS	ENSG00000135677.11	transcript	ENST00000258145.8	protein_coding	9/13			chr12	TogoVar
GOLGA3_chr12_132763914_132833869	132767615	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0009 a0009	a0009c0015 a0009c0015	a0009c0015t0080 a0009c0015t0080	a0009c0015t0080g0065 a0009c0015t0080g0065	1	308	0.0033	11	c.54 others(22): Show c.5489_*5490insTTTTTTTTTTT	GOLGA3	ENSG00000090615.16	transcript	ENST00000450791.8	protein_coding		1298		chr12	TogoVar
GOLGA3_chr12_132763914_132833869	132791050	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0196 a0001c0003t0002g0196	1	308	0.0033	11	c.254 others(28): Show c.2547+155_2547+165dupTTTTTTTTTTT	GOLGA3	ENSG00000090615.16	transcript	ENST00000450791.8	protein_coding	12/23			chr12	TogoVar
GOLGA4_chr3_37238271_37371879	37238492	A A	AGAGAGAT others(4): Show AGAGAGATGTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19067.hp2 NA19067.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	272	0.0037	11	c.-50 others(22): Show c.-5059_-5058insGAGAGATGTCT	GOLGA4	ENSG00000144674.19	transcript	ENST00000361924.7	protein_coding		4778		chr3	TogoVar
GOLGA4_chr3_37238271_37371879	37362780	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02922.hp1 HG03225.hp2 HG02257.hp2 HG02922.hp1 HG03225.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0002 a0005c0004t0002	a0005c0004t0002g0063 a0005c0004t0002g0064 a0005c0004t0002g0066 a0005c0004t0002g0063 a0005c0004t0002g0064 a0005c0004t0002g0066	3	272	0.0110	11	c.33 others(28): Show c.33+1485_*33+1495dupTTTTTTTTTTT	GOLGA4	ENSG00000144674.19	transcript	ENST00000361924.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr3	TogoVar
GOLGA6B_chr15_72649697_72674599	72660585	G G	GTGTGTGT others(4): Show GTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01978.hp2 HG02055.hp1 others(2): Show HG01433.hp2 HG01978.hp2 HG02055.hp1 HG02055.hp2 HG04204.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0007 a0001c0001 a0002c0003 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0002c0003t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0002c0003t0003 a0002c0007t0003	a0001c0001t0001g0145 a0001c0001t0001g0214 a0001c0001t0002g0146 others(2): Show a0001c0001t0001g0145 a0001c0001t0001g0214 a0001c0001t0002g0146 a0002c0003t0003g0073 a0002c0007t0003g0074	5	333	0.0150	11	c.564 others(26): Show c.564+356_564+357insTGTGTGTGTGT	GOLGA6B	ENSG00000215186.7	transcript	ENST00000421285.4	protein_coding	7/17			chr15	TogoVar
GOLGA6C_chr15_75253334_75278455	75277197	A A	AATGGTGT others(4): Show AATGGTGTCTCG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0009 a0002c0007t0009	a0002c0007t0009g0056 a0002c0007t0009g0056	1	200	0.0050	11	c.69 others(22): Show c.6998_*6999insATGGTGTCTCG	GOLGA6C	ENSG00000167195.8	transcript	ENST00000300576.6	protein_coding		3743		chr15	TogoVar
GOLGA6C_chr15_75253334_75278455	75277197	A A	AGTGGTGT others(4): Show AGTGGTGTCTCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG01981.hp2 others(20): Show HG00099.hp2 HG00280.hp2 HG01981.hp2 HG02280.hp2 HG02300.hp2 HG02559.hp1 HG02896.hp2 HG03239.hp2 NA18945.hp2 NA18948.hp1 NA18953.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp1 NA18997.hp2 NA19000.hp2 NA19006.hp1 NA19009.hp1 NA19009.hp2 NA19011.hp2 NA19060.hp2 NA19078.hp1 NA19087.hp2	a0001 a0003 a0004 others(7): Show a0001 a0003 a0004 a0005 a0006 a0007 a0010 a0013 a0015 a0036	a0001c0001 a0001c0008 a0003c0002 others(9): Show a0001c0001 a0001c0008 a0003c0002 a0004c0003 a0005c0005 a0005c0031 a0006c0006 a0007c0004 a0010c0033 a0013c0046 a0015c0048 a0036c0027	a0001c0001t0001 a0001c0008t0002 a0003c0002t0004 others(9): Show a0001c0001t0001 a0001c0008t0002 a0003c0002t0004 a0004c0003t0003 a0005c0005t0003 a0005c0031t0029 a0006c0006t0003 a0007c0004t0001 a0010c0033t0009 a0013c0046t0021 a0015c0048t0004 a0036c0027t0004	a0001c0001t0001g0067 a0001c0008t0002g0002 a0003c0002t0004g0084 others(20): Show a0001c0001t0001g0067 a0001c0008t0002g0002 a0003c0002t0004g0084 a0003c0002t0004g0086 a0003c0002t0004g0087 a0003c0002t0004g0088 a0003c0002t0004g0103 a0003c0002t0004g0108 a0003c0002t0004g0109 a0003c0002t0004g0110 a0004c0003t0003g0033 a0004c0003t0003g0058 a0005c0005t0003g0021 a0005c0005t0003g0023 a0005c0031t0029g0042 a0006c0006t0003g0022 a0006c0006t0003g0059 a0006c0006t0003g0060 a0007c0004t0001g0094 a0010c0033t0009g0034 a0013c0046t0021g0114 a0015c0048t0004g0111 a0036c0027t0004g0072	23	200	0.1150	11	c.69 others(22): Show c.6998_*6999insGTGGTGTCTCG	GOLGA6C	ENSG00000167195.8	transcript	ENST00000300576.6	protein_coding		3743		chr15	TogoVar
GOLGA6D_chr15_75277835_75300530	75298120	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0004 a0004	a0004c0012 a0004c0012	a0004c0012t0003 a0004c0012t0003	a0004c0012t0003g0048 a0004c0012t0003g0048	1	234	0.0043	11	c.36 others(22): Show c.3645_*3646insAAAAAAAAAAA	GOLGA6D	ENSG00000140478.17	transcript	ENST00000434739.4	protein_coding		2591		chr15	TogoVar
GOLGA6L1_chr15_23122066_23141822	23132041	T T	TTTCTTTC others(4): Show TTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0058 a0058	a0058c0045 a0058c0045	a0058c0045t0007 a0058c0045t0007	a0058c0045t0007g0083 a0058c0045t0007g0083	1	204	0.0049	11	c.580 others(26): Show c.580-182_580-181insGAAAGAAAGAA	GOLGA6L1	ENSG00000273976.2	transcript	ENST00000614055.2	protein_coding	5/8			chr15	TogoVar
GOLGA6L1_chr15_23122066_23141822	23139771	C C	CAGCTGTT others(4): Show CAGCTGTTGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0035 a0035	a0035c0072 a0035c0072	a0035c0072t0016 a0035c0072t0016	a0035c0072t0016g0031 a0035c0072t0016g0031	1	204	0.0049	11	c.-30 others(22): Show c.-3041_-3040insTTTCAACAGCT	GOLGA6L1	ENSG00000273976.2	transcript	ENST00000614055.2	protein_coding		2950		chr15	TogoVar
GOLGA6L1_chr15_23122066_23141822	23139771	C C	CAGCTGTT others(4): Show CAGCTGTTTGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0034 a0034	a0034c0071 a0034c0071	a0034c0071t0001 a0034c0071t0001	a0034c0071t0001g0133 a0034c0071t0001g0133	1	204	0.0049	11	c.-30 others(22): Show c.-3041_-3040insTTCAAACAGCT	GOLGA6L1	ENSG00000273976.2	transcript	ENST00000614055.2	protein_coding		2950		chr15	TogoVar
GOLGA6L1_chr15_23122066_23141822	23141193	C C	CTTAACAG others(4): Show CTTAACAGTGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0005 a0002c0003t0002g0005	1	204	0.0049	11	c.-44 others(22): Show c.-4463_-4462insTTCACTGTTAA	GOLGA6L1	ENSG00000273976.2	transcript	ENST00000614055.2	protein_coding		4372		chr15	TogoVar
GOLGA6L22_chr15_22453903_22474226	22467824	A A	ATCGCTTG others(4): Show ATCGCTTGAACC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0001 a0002c0002t0007g0001	1	226	0.0044	11	c.34 others(20): Show c.345_*355dupCGCTTGAACCT	GOLGA6L22	ENSG00000277865.6	transcript	ENST00000622895.2	protein_coding	9/9	1012	INFO_REALIGN_3_PRIME	chr15	TogoVar
GOLGA6L6_chr15_20526856_20546800	20537053	T T	TTTCTTTC others(4): Show TTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0006 a0006	a0006c0011 a0006c0011	a0006c0011t0004 a0006c0011t0004	a0006c0011t0004g0110 a0006c0011t0004g0110	1	214	0.0047	11	c.544 others(26): Show c.544-182_544-181insGAAAGAAAGAA	GOLGA6L6	ENSG00000277322.1	transcript	ENST00000619213.1	protein_coding	5/8			chr15	TogoVar
GOLGA6L7_chr15_28836832_28853644	28840794	A A	AATGTCCT others(4): Show AATGTCCTCAGC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18954.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	422	0.0024	11	c.14 others(22): Show c.1440_*1441insGCTGAGGACAT	GOLGA6L7	ENSG00000261649.7	transcript	ENST00000567390.7	protein_coding		1037		chr15	TogoVar
GOLGA8A_chr15_34374068_34442808	34375595	T T	TATATATA others(4): Show TATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp1 NA18950.hp1 NA18979.hp2 others(3): Show HG03486.hp1 NA18950.hp1 NA18979.hp2 NA19000.hp1 NA19004.hp1 NA19043.hp1	a0001 a0022 a0001 a0022	a0001c0001 a0022c0033 a0001c0001 a0022c0033	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0001c0001t0014 a0022c0033t0087	a0001c0001t0001g0049 a0001c0001t0005g0064 a0001c0001t0006g0102 others(3): Show a0001c0001t0001g0049 a0001c0001t0005g0064 a0001c0001t0006g0102 a0001c0001t0010g0121 a0001c0001t0014g0016 a0022c0033t0087g0129	6	245	0.0245	11	c.58 others(22): Show c.5815_*5816insTATATATATAT	GOLGA8A	ENSG00000175265.19	transcript	ENST00000359187.5	protein_coding		3472		chr15	TogoVar
GOLGA8B_chr15_34520095_34588651	34538724	A A	AACACTAG others(4): Show AACACTAGATCG	intron_variant intron_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0014 a0002c0002t0014	a0002c0002t0014g0038 a0002c0002t0014g0038	1	198	0.0051	11	c.-38 others(30): Show c.-381-1078_-381-1077insCGATCTAGTGT	GOLGA8B	ENSG00000215252.12	transcript	ENST00000683415.1	protein_coding	7/23			chr15	TogoVar
GOLGA8B_chr15_34520095_34588651	34567629	A A	AAGACTGA others(4): Show AAGACTGAACTG	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0177 a0001c0005t0001g0177	1	198	0.0051	11	c.-11 others(34): Show c.-1122-13674_-1122-13673insCAGTTCAGTCT	GOLGA8B	ENSG00000215252.12	transcript	ENST00000683415.1	protein_coding	1/23			chr15	TogoVar
GOLGA8B_chr15_34520095_34588651	34584748	C C	CGGGGGGG others(4): Show CGGGGGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG01891.hp2 HG02258.hp1 others(6): Show HG00738.hp1 HG01891.hp2 HG02258.hp1 HG02886.hp1 HG03209.hp2 HG03491.hp2 HG03704.hp2 NA19004.hp1 NA19079.hp2	a0002 a0006 a0012 a0002 a0006 a0012	a0002c0002 a0006c0006 a0012c0023 a0002c0002 a0006c0006 a0012c0023	a0002c0002t0002 a0002c0002t0005 a0006c0006t0008 others(1): Show a0002c0002t0002 a0002c0002t0005 a0006c0006t0008 a0012c0023t0002	a0002c0002t0002g0012 a0002c0002t0002g0029 a0002c0002t0002g0030 others(5): Show a0002c0002t0002g0012 a0002c0002t0002g0029 a0002c0002t0002g0030 a0002c0002t0002g0034 a0002c0002t0002g0039 a0002c0002t0005g0064 a0006c0006t0008g0003 a0012c0023t0002g0026	9	198	0.0455	11	c.-23 others(22): Show c.-2366_-2356dupCCCCCCCCCCC	GOLGA8B	ENSG00000215252.12	transcript	ENST00000683415.1	protein_coding		1098		chr15	TogoVar

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