Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
IDE_chr10_92446684_92579093	92552857	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01168.hp2 HG01175.hp1 others(7): Show HG00733.hp2 HG01168.hp2 HG01175.hp1 HG01261.hp2 HG01361.hp2 HG02293.hp2 HG02922.hp2 HG02976.hp2 HG03239.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0004 a0001c0001t0001 a0001c0002t0004	a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0041 others(7): Show a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0041 a0001c0001t0001g0047 a0001c0001t0001g0102 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0002t0004g0222	10	314	0.0319	11	c.99- others(28): Show c.99-15318_99-15308dupTTTTTTTTTTT	IDE	ENSG00000119912.18	transcript	ENST00000265986.11	protein_coding	1/24			chr10	TogoVar
IDE_chr10_92446684_92579093	92573001	G G	GGGTCCAG others(4): Show GGGTCCAGCACA	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0312 a0001c0001t0002g0312	1	314	0.0032	11	c.98+ others(24): Show c.98+910_98+920dupTGTGCTGGACC	IDE	ENSG00000119912.18	transcript	ENST00000265986.11	protein_coding	1/24			chr10	TogoVar
IDH2_chr15_90078045_90107468	90083119	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp2 HG02965.hp1 HG02258.hp2 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0057 a0001c0001t0016g0278 a0001c0001t0016g0057 a0001c0001t0016g0278	2	440	0.0046	11	c.11 others(22): Show c.1136_*1146dupAAAAAAAAAAA	IDH2	ENSG00000182054.10	transcript	ENST00000330062.8	protein_coding	11/11	1146		chr15	TogoVar
IDH3A_chr15_78144362_78176945	78158464	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0214 a0001c0002t0001g0214	1	386	0.0026	11	c.174 others(26): Show c.174+833_174+834insATATATATATA	IDH3A	ENSG00000166411.14	transcript	ENST00000299518.7	protein_coding	3/10			chr15	TogoVar
IDH3B_chr20_2653395_2669216	2661177	C C	CTGTGTGG others(4): Show CTGTGTGGTGTG	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	440	0.0023	11	c.338 others(26): Show c.338-209_338-208insCACACCACACA	IDH3B	ENSG00000101365.21	transcript	ENST00000380843.9	protein_coding	4/11			chr20	TogoVar
IDI2_chr10_1013910_1030859	1025052	A A	ACACACAC others(4): Show ACACACACACAC	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01192.hp1 NA18941.hp2 HG00558.hp2 HG01192.hp1 NA18941.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0103	3	434	0.0069	11	c.-21 others(26): Show c.-21-309_-21-308insGTGTGTGTGTG	IDI2	ENSG00000148377.6	transcript	ENST00000277517.2	protein_coding	1/4			chr10	TogoVar
IDNK_chr9_83618143_83649123	83631451	G G	GAAAAAAA others(4): Show GAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02615.hp1 HG02896.hp1 others(7): Show HG02572.hp1 HG02615.hp1 HG02896.hp1 HG02970.hp1 HG02976.hp2 HG03195.hp1 HG03579.hp1 HG03654.hp2 NA18978.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0089 others(4): Show a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0089 a0001c0001t0001g0183 a0001c0001t0001g0191 a0001c0001t0001g0195 a0001c0001t0001g0201	10	332	0.0301	11	c.168 others(28): Show c.168+2501_168+2511dupAAAAAAAAAAA	IDNK	ENSG00000148057.16	transcript	ENST00000376419.5	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr9	TogoVar
IDO2_chr8_39929651_40021392	40004525	T T	TGATAGAT others(4): Show TGATAGATGATA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0175 a0001c0001t0009g0175	1	360	0.0028	11	c.668 others(26): Show c.668-795_668-794insGATAGATAGAT	IDO2	ENSG00000188676.15	transcript	ENST00000502986.4	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr8	TogoVar
IER2_chr19_13145411_13159911	13147079	A A	ACACACAC others(4): Show ACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0002 a0002c0003t0003g0002	1	330	0.0030	11	c.-37 others(22): Show c.-3717_-3716insCACACACACAC	IER2	ENSG00000160888.7	transcript	ENST00000292433.4	protein_coding		3331		chr19	TogoVar
IER3IP1_chr18_47147834_47181364	47179060	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG01884.hp1 NA19060.hp1 others(1): Show HG00408.hp2 HG01884.hp1 NA19060.hp1 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0026 a0001c0001t0004 a0001c0001t0006 a0001c0001t0026	a0001c0001t0004g0005 a0001c0001t0006g0006 a0001c0001t0006g0042 others(1): Show a0001c0001t0004g0005 a0001c0001t0006g0006 a0001c0001t0006g0042 a0001c0001t0026g0160	4	378	0.0106	11	c.-27 others(22): Show c.-2784_-2783insTTTTTTTTTTT	IER3IP1	ENSG00000134049.6	transcript	ENST00000256433.6	protein_coding		2697		chr18	TogoVar
IER3_chr6_30738199_30749547	30742590	G G	GGGAGCCG others(4): Show GGGAGCCGGGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0010 a0001c0001t0007g0010	1	449	0.0022	11	c.13 others(22): Show c.1335_*1345dupTGCCCGGCTCC	IER3	ENSG00000137331.12	transcript	ENST00000259874.6	protein_coding		608		chr6	TogoVar
IER3_chr6_30738199_30749547	30746573	T T	TATATATA others(4): Show TATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	449	0.0022	11	c.-20 others(22): Show c.-2056_-2055insTATATATATAT	IER3	ENSG00000137331.12	transcript	ENST00000259874.6	protein_coding		2027		chr6	TogoVar
IFFO2_chr1_18899280_18961676	18934057	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01192.hp1 HG01361.hp2 others(2): Show HG01123.hp1 HG01192.hp1 HG01361.hp2 HG02004.hp1 HG03490.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0006 a0001c0001t0018 others(1): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0018 a0001c0002t0010	a0001c0001t0004g0044 a0001c0001t0006g0058 a0001c0001t0018g0060 others(2): Show a0001c0001t0004g0044 a0001c0001t0006g0058 a0001c0001t0018g0060 a0001c0002t0010g0059 a0001c0002t0010g0061	5	376	0.0133	11	c.666 others(30): Show c.666-12947_666-12937dupAAAAAAAAAAA	IFFO2	ENSG00000169991.11	transcript	ENST00000455833.7	protein_coding	1/8			chr1	TogoVar
IFI27L2_chr14_94122781_94134604	94124920	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp1 HG03195.hp2 NA19043.hp2 HG03195.hp1 HG03195.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	3	433	0.0069	11	c.28 others(22): Show c.2878_*2879insAAAAAAAAAAA	IFI27L2	ENSG00000119632.4	transcript	ENST00000238609.4	protein_coding		2860		chr14	TogoVar
IFI27_chr14_94105736_94121690	94121006	C C	CTCTGAGT others(4): Show CTCTGAGTCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(76): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp2 HG00323.hp1 HG00438.hp2 HG00642.hp2 HG00733.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01071.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01261.hp1 HG01261.hp2 HG01358.hp2 HG01496.hp1 HG01515.hp2 HG01517.hp2 HG01928.hp1 HG01943.hp2 HG02004.hp1 HG02055.hp1 HG02074.hp2 HG02135.hp1 HG02145.hp1 HG02257.hp2 HG02602.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG02735.hp1 HG02818.hp1 HG02818.hp2 HG03239.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp2 HG03710.hp2 HG03834.hp2 HG03942.hp2 HG04184.hp2 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp2 NA18747.hp1 NA18942.hp2 NA18947.hp2 NA18948.hp1 NA18964.hp1 NA18968.hp2 NA18970.hp1 NA18970.hp2 NA18977.hp1 NA18978.hp2 NA18985.hp2 NA18998.hp1 NA19002.hp1 NA19011.hp1 NA19030.hp1 NA19079.hp1 NA19081.hp2 NA19083.hp2 NA19088.hp2 NA19089.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0005 a0001c0001 a0002c0002 a0005c0005	a0001c0001t0001 a0002c0002t0001 a0005c0005t0001 a0001c0001t0001 a0002c0002t0001 a0005c0005t0001	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0024 others(15): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0024 a0001c0001t0001g0030 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0054 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0076 a0001c0001t0001g0083 a0002c0002t0001g0025 a0005c0005t0001g0079	79	467	0.1692	11	c.44 others(22): Show c.4479_*4480insTCTGAGTCTCA	IFI27	ENSG00000165949.13	transcript	ENST00000621160.5	protein_coding		4317		chr14	TogoVar
IFIH1_chr2_162262074_162323684	162314416	T T	TTTCTTTC others(4): Show TTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG03486.hp2 HG00438.hp1 HG03486.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0003c0002 a0001c0003 a0003c0002	a0001c0003t0001 a0003c0002t0001 a0001c0003t0001 a0003c0002t0001	a0001c0003t0001g0072 a0003c0002t0001g0143 a0001c0003t0001g0072 a0003c0002t0001g0143	2	220	0.0091	11	c.453 others(28): Show c.453+3438_453+3439insGAAAGAAAGAA	IFIH1	ENSG00000115267.10	transcript	ENST00000649979.2	protein_coding	1/15			chr2	TogoVar
IFIH1_chr2_162262074_162323684	162314421	T T	TTTTCTTC others(4): Show TTTTCTTCTTTC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0073 a0002c0001t0001g0073	1	220	0.0046	11	c.453 others(28): Show c.453+3433_453+3434insGAAAGAAGAAA	IFIH1	ENSG00000115267.10	transcript	ENST00000649979.2	protein_coding	1/15			chr2	TogoVar
IFIH1_chr2_162262074_162323684	162322414	T T	TTTATTTA others(4): Show TTTATTTATTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG01106.hp2 HG02615.hp2 HG00639.hp1 HG01106.hp2 HG02615.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0007 a0001c0004t0004g0019 a0001c0004t0004g0007 a0001c0004t0004g0019	3	220	0.0136	11	c.-41 others(22): Show c.-4108_-4107insTAAATAAATAA	IFIH1	ENSG00000115267.10	transcript	ENST00000649979.2	protein_coding		3731		chr2	TogoVar
IFIT1_chr10_89387623_89411487	89392466	T T	TCCCCCCC others(4): Show TCCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0025 a0001c0003t0007g0025	1	430	0.0023	11	c.-24 others(20): Show c.-247_-246insCCCCCCCCCCC	IFIT1	ENSG00000185745.10	transcript	ENST00000371804.4	protein_coding		156		chr10	TogoVar
IFIT1_chr10_89387623_89411487	89394590	A A	ATATATAT others(4): Show ATATATATATTT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0104 a0001c0001t0005g0104	1	430	0.0023	11	c.5+1 others(24): Show c.5+1882_5+1883insTTTATATATAT	IFIT1	ENSG00000185745.10	transcript	ENST00000371804.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr10	TogoVar
IFITM1_chr11_309040_320272	314857	C C	CAGTGAGG others(4): Show CAGTGAGGAGCT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	34	0.0294	11	c.187 others(24): Show c.187-65_187-64insAGTGAGGAGCT	IFITM1	ENSG00000185885.17	transcript	ENST00000408968.4	protein_coding	1/1			chr11	TogoVar
IFITM3_chr11_314676_325860	314857	C C	CAGTGAGG others(4): Show CAGTGAGGAGCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0003 a0001c0002t0002g0003	1	31	0.0323	11	c.49 others(22): Show c.4980_*4981insAGCTCCTCACT	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding		4818		chr11	TogoVar
IFITM5_chr11_293200_304526	294044	C C	CTTCCACT others(4): Show CTTCCACTCCCA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	434	0.0023	11	c.44 others(22): Show c.4456_*4457insTGGGAGTGGAA	IFITM5	ENSG00000206013.2	transcript	ENST00000382614.2	protein_coding		4155		chr11	TogoVar
IFITM5_chr11_293200_304526	297577	G G	GGGTGTGT others(4): Show GGGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0031 a0002c0002t0008g0031	1	434	0.0023	11	c.92 others(20): Show c.923_*924insACACACACACC	IFITM5	ENSG00000206013.2	transcript	ENST00000382614.2	protein_coding		622		chr11	TogoVar
IFNA4_chr9_21181618_21192587	21184322	T T	TTTCTTCC others(4): Show TTTCTTCCTTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	428	0.0023	11	c.26 others(22): Show c.2639_*2640insGGAAGGAAGAA	IFNA4	ENSG00000236637.5	transcript	ENST00000421715.3	protein_coding		2295		chr9	TogoVar
IFNAR1_chr21_33319970_33364864	33322093	C C	CACGCATG others(4): Show CACGCATGGAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0036 a0001c0001t0007g0036	1	323	0.0031	11	c.-29 others(22): Show c.-2963_-2962insACGCATGGAAT	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2876		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322192	A A	ATATTGGA others(4): Show ATATTGGATCGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	323	0.0031	11	c.-28 others(22): Show c.-2864_-2863insTATTGGATCGT	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2777		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322194	T T	TATATACA others(4): Show TATATACATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0025 a0002c0002t0025	a0002c0002t0025g0031 a0002c0002t0025g0031	1	323	0.0031	11	c.-28 others(22): Show c.-2862_-2861insATATACATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2775		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322259	C C	CTGGAATA others(4): Show CTGGAATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG03486.hp1 HG03516.hp2 HG02055.hp1 HG03486.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0027 a0001c0001t0001 a0001c0001t0027	a0001c0001t0001g0240 a0001c0001t0001g0244 a0001c0001t0027g0241 a0001c0001t0001g0240 a0001c0001t0001g0244 a0001c0001t0027g0241	3	323	0.0093	11	c.-27 others(22): Show c.-2797_-2796insTGGAATATATA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2710		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322269	T T	TATGGAAT others(4): Show TATGGAATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18948.hp2 NA18948.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0108 a0001c0001t0002g0108	1	323	0.0031	11	c.-27 others(22): Show c.-2787_-2786insATGGAATATAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2700		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322318	A A	ACATATAT others(4): Show ACATATATATGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0182 a0001c0001t0003g0182	1	323	0.0031	11	c.-27 others(22): Show c.-2738_-2737insCATATATATGG	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2651		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322319	T T	TATATATC others(4): Show TATATATCTGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	323	0.0031	11	c.-27 others(22): Show c.-2737_-2736insATATATCTGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2650		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322343	G G	GGAATATA others(4): Show GGAATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0026 a0001c0001t0003g0026	1	323	0.0031	11	c.-27 others(22): Show c.-2713_-2712insGAATATATATA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2626		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322373	T T	TATATATA others(4): Show TATATATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01358.hp1 HG01496.hp2 others(3): Show HG01192.hp2 HG01358.hp1 HG01496.hp2 HG02809.hp1 HG03130.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0039 a0001c0001t0001g0088 others(3): Show a0001c0001t0001g0016 a0001c0001t0001g0039 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0097 a0001c0001t0001g0242	6	323	0.0186	11	c.-26 others(22): Show c.-2683_-2682insATATATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2596		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322377	T T	TATATGGA others(4): Show TATATGGAATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp1 HG02572.hp2 HG06807.hp2 HG01978.hp1 HG02572.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0035 a0001c0001t0036 a0001c0001t0001 a0001c0001t0035 a0001c0001t0036	a0001c0001t0001g0136 a0001c0001t0035g0134 a0001c0001t0036g0133 a0001c0001t0001g0136 a0001c0001t0035g0134 a0001c0001t0036g0133	3	323	0.0093	11	c.-26 others(22): Show c.-2679_-2678insATATGGAATAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2592		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322401	T T	TATATATA others(4): Show TATATATACGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0152 a0001c0001t0001g0152	1	323	0.0031	11	c.-26 others(22): Show c.-2655_-2654insATATATACGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2568		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322405	T T	TATATGGA others(4): Show TATATGGAATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp1 NA18942.hp2 HG03239.hp1 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0003 a0001c0001t0011g0011 a0001c0001t0001g0003 a0001c0001t0011g0011	2	323	0.0062	11	c.-26 others(22): Show c.-2651_-2650insATATGGAATAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2564		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322429	T T	TATATACA others(4): Show TATATACATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0001 a0002c0002t0002g0001	1	323	0.0031	11	c.-26 others(22): Show c.-2627_-2626insATATACATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2540		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322429	T T	TATATATA others(4): Show TATATATACGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp1 HG02572.hp2 HG06807.hp2 HG01978.hp1 HG02572.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0035 a0001c0001t0036 a0001c0001t0001 a0001c0001t0035 a0001c0001t0036	a0001c0001t0001g0136 a0001c0001t0035g0134 a0001c0001t0036g0133 a0001c0001t0001g0136 a0001c0001t0035g0134 a0001c0001t0036g0133	3	323	0.0093	11	c.-26 others(22): Show c.-2627_-2626insATATATACGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2540		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322429	T T	TATATATA others(4): Show TATATATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0027 a0002c0002t0006g0027	1	323	0.0031	11	c.-26 others(22): Show c.-2627_-2626insATATATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2540		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322455	T T	TATATATA others(4): Show TATATATACGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG01168.hp2 HG01169.hp1 others(7): Show HG00280.hp2 HG01168.hp2 HG01169.hp1 HG01975.hp1 HG02602.hp2 HG03831.hp2 HG04184.hp2 NA18945.hp1 NA18948.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0001t0001 a0001c0001t0002 a0001c0001t0011	a0001c0001t0001g0007 a0001c0001t0001g0146 a0001c0001t0001g0158 others(5): Show a0001c0001t0001g0007 a0001c0001t0001g0146 a0001c0001t0001g0158 a0001c0001t0002g0024 a0001c0001t0002g0151 a0001c0001t0002g0156 a0001c0001t0011g0011 a0001c0001t0011g0025	10	323	0.0310	11	c.-26 others(22): Show c.-2601_-2600insATATATACGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2514		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322455	T T	TATATATA others(4): Show TATATATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG03490.hp2 HG01109.hp1 HG03490.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0226 a0002c0002t0002g0233 a0002c0002t0002g0226 a0002c0002t0002g0233	2	323	0.0062	11	c.-26 others(22): Show c.-2601_-2600insATATATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2514		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322483	T T	TATATATA others(4): Show TATATATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0226 a0002c0002t0002g0226	1	323	0.0031	11	c.-25 others(22): Show c.-2573_-2572insATATATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2486		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322560	T T	TAATATAT others(4): Show TAATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00639.hp1 HG01099.hp1 others(27): Show HG00099.hp1 HG00639.hp1 HG01099.hp1 HG01175.hp1 HG01175.hp2 HG02055.hp2 HG02109.hp1 HG02145.hp2 HG02258.hp1 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp1 HG03834.hp2 HG04115.hp2 HG06807.hp1 NA18906.hp2 NA18973.hp1 NA19030.hp1 NA19043.hp1 NA20905.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0005 a0001c0001t0020 others(11): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0003c0003t0004 a0003c0003t0009 a0003c0003t0023 a0003c0003t0031 a0003c0003t0032	a0001c0001t0001g0019 a0001c0001t0001g0107 a0001c0001t0001g0111 others(25): Show a0001c0001t0001g0019 a0001c0001t0001g0107 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0034 a0001c0001t0005g0110 a0001c0001t0005g0113 a0001c0001t0005g0114 a0001c0001t0020g0020 a0001c0001t0020g0130 a0001c0001t0021g0142 a0001c0001t0022g0120 a0001c0001t0041g0126 a0001c0001t0042g0127 a0001c0001t0043g0128 a0001c0001t0044g0020 a0003c0003t0004g0010 a0003c0003t0004g0122 a0003c0003t0004g0124 a0003c0003t0004g0125 a0003c0003t0004g0143 a0003c0003t0009g0117 a0003c0003t0009g0119 a0003c0003t0023g0121 a0003c0003t0031g0109 a0003c0003t0032g0115	30	323	0.0929	11	c.-24 others(22): Show c.-2496_-2495insAATATATATAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2409		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322573	T T	TAATATAT others(4): Show TAATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp1 HG03579.hp2 HG03471.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0017 a0001c0001t0015g0100 a0001c0001t0015g0017 a0001c0001t0015g0100	2	323	0.0062	11	c.-24 others(22): Show c.-2483_-2482insAATATATATAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2396		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322602	T T	TATATATA others(4): Show TATATATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0031 a0002c0002t0002g0031	1	323	0.0031	11	c.-24 others(22): Show c.-2454_-2453insATATATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2367		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322606	T T	TATATATG others(4): Show TATATATGGAAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp2 HG04199.hp1 HG02074.hp2 HG04199.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0006 a0002c0002t0002 a0002c0002t0006	a0002c0002t0002g0001 a0002c0002t0006g0206 a0002c0002t0002g0001 a0002c0002t0006g0206	2	323	0.0062	11	c.-24 others(22): Show c.-2450_-2449insATATATGGAAC	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2363		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322680	T T	TATATATA others(4): Show TATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp1 HG03579.hp2 HG03471.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0017 a0001c0001t0015g0100 a0001c0001t0015g0017 a0001c0001t0015g0100	2	323	0.0062	11	c.-23 others(22): Show c.-2376_-2375insATATATATATA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2289		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322680	T T	TATGTATA others(4): Show TATGTATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0229 a0002c0002t0002g0229	1	323	0.0031	11	c.-23 others(22): Show c.-2376_-2375insATGTATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2289		chr21	TogoVar
IFNAR1_chr21_33319970_33364864	33322730	T T	TATGTATA others(4): Show TATGTATATGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0230 a0002c0002t0002g0230	1	323	0.0031	11	c.-23 others(22): Show c.-2326_-2325insATGTATATGGA	IFNAR1	ENSG00000142166.15	transcript	ENST00000270139.8	protein_coding		2239		chr21	TogoVar

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