Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
C1QBP_chr17_5427777_5444155	5431484	T T	TTAAAAAA others(4): Show TTAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19054.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0070 a0001c0001t0002g0070	1	408	0.0025	11	c.15 others(22): Show c.1530_*1531insTTTTTTTTTTA	C1QBP	ENSG00000108561.8	transcript	ENST00000225698.8	protein_coding		1292		chr17	TogoVar
C1QC_chr1_22638633_22653108	22640674	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02818.hp2 HG02486.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0002t0001 a0001c0001t0006 a0001c0002t0001	a0001c0001t0006g0006 a0001c0002t0001g0007 a0001c0001t0006g0006 a0001c0002t0001g0007	2	450	0.0044	11	c.-30 others(22): Show c.-3054_-3053insAAAAAAAAAAA	C1QC	ENSG00000159189.13	transcript	ENST00000374640.9	protein_coding		2958		chr1	TogoVar
C1QL3_chr10_16508734_16526879	16519140	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00544.hp1 HG00735.hp1 others(33): Show HG00140.hp2 HG00544.hp1 HG00735.hp1 HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01934.hp1 HG01975.hp2 HG02056.hp1 HG02074.hp1 HG02451.hp1 HG02572.hp1 HG02630.hp2 HG02647.hp2 HG02897.hp1 HG03139.hp1 HG03225.hp2 HG03688.hp1 HG04228.hp2 NA18940.hp1 NA18949.hp1 NA19060.hp2 NA19062.hp1 NA19072.hp2 NA19084.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005	a0001c0001t0001g0062 a0001c0001t0001g0094 a0001c0002t0001g0003 others(9): Show a0001c0001t0001g0062 a0001c0001t0001g0094 a0001c0002t0001g0003 a0001c0002t0001g0018 a0001c0002t0001g0048 a0001c0002t0001g0102 a0001c0002t0001g0104 a0001c0002t0001g0107 a0001c0002t0001g0120 a0001c0002t0003g0047 a0001c0002t0003g0112 a0001c0002t0005g0119	36	460	0.0783	11	c.588 others(28): Show c.588+1327_588+1337dupAAAAAAAAAAA	C1QL3	ENSG00000165985.11	transcript	ENST00000298943.4	protein_coding	1/1			chr10	TogoVar
C1QTNF12_chr1_1237453_1251722	1244755	C C	CCCACTCC others(4): Show CCCACTCCTCAT	intron_variant intron_variant	MODIFIER	HG01928.hp2 HG01928.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0081	1	328	0.0031	11	c.178 others(26): Show c.178-259_178-258insATGAGGAGTGG	C1QTNF12	ENSG00000184163.3	transcript	ENST00000330388.2	protein_coding	1/7			chr1	TogoVar
C1QTNF12_chr1_1237453_1251722	1248301	G G	GGAGGCTG others(4): Show GGAGGCTGTACC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	328	0.0031	11	c.-16 others(22): Show c.-1612_-1611insGGTACAGCCTC	C1QTNF12	ENSG00000184163.3	transcript	ENST00000330388.2	protein_coding		1580		chr1	TogoVar
C1QTNF2_chr5_160342754_160375626	160354591	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	452	0.0022	11	c.244 others(26): Show c.244+176_244+177insATATATATATA	C1QTNF2	ENSG00000145861.9	transcript	ENST00000652664.2	protein_coding	2/2			chr5	TogoVar
C1QTNF2_chr5_160342754_160375626	160354593	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	NA18986.hp1 NA19086.hp1 NA18986.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0012 a0001c0001t0001 a0001c0001t0012	a0001c0001t0001g0160 a0001c0001t0012g0109 a0001c0001t0001g0160 a0001c0001t0012g0109	2	452	0.0044	11	c.244 others(26): Show c.244+174_244+175insATATATATATA	C1QTNF2	ENSG00000145861.9	transcript	ENST00000652664.2	protein_coding	2/2			chr5	TogoVar
C1QTNF2_chr5_160342754_160375626	160354595	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG03017.hp2 NA18974.hp2 others(1): Show HG00438.hp2 HG03017.hp2 NA18974.hp2 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0132 a0001c0001t0001g0155 a0001c0001t0001g0241 others(1): Show a0001c0001t0001g0132 a0001c0001t0001g0155 a0001c0001t0001g0241 a0001c0001t0002g0149	4	452	0.0089	11	c.244 others(26): Show c.244+172_244+173insATATATATATA	C1QTNF2	ENSG00000145861.9	transcript	ENST00000652664.2	protein_coding	2/2			chr5	TogoVar
C1QTNF2_chr5_160342754_160375626	160354597	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0130 a0001c0001t0001g0130	1	452	0.0022	11	c.244 others(26): Show c.244+170_244+171insATATATATATA	C1QTNF2	ENSG00000145861.9	transcript	ENST00000652664.2	protein_coding	2/2			chr5	TogoVar
C1QTNF4_chr11_47584667_47599411	47588719	A A	AGATGTGT others(4): Show AGATGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	408	0.0025	11	c.11 others(22): Show c.1101_*1102insACACACACATC	C1QTNF4	ENSG00000172247.4	transcript	ENST00000302514.4	protein_coding		947		chr11	TogoVar
C1QTNF7_chr4_15423033_15451167	15450575	A A	ACACCCAC others(4): Show ACACCCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 NA18947.hp1 NA18956.hp1 HG01081.hp2 NA18947.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0005 a0001c0001t0004g0014 a0001c0001t0004g0134 a0001c0001t0004g0005 a0001c0001t0004g0014 a0001c0001t0004g0134	3	444	0.0068	11	c.77 others(22): Show c.7776_*7777insCACCCACACAC	C1QTNF7	ENSG00000163145.13	transcript	ENST00000444304.3	protein_coding		4409		chr4	TogoVar
C1QTNF8_chr16_1083226_1101244	1093456	A A	ACCGCGCG others(4): Show ACCGCGCGCGCG	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0071 a0001c0001t0011g0071	1	396	0.0025	11	c.4+ others(22): Show c.4+40_*4+41insCGCGCGCGCGG	C1QTNF8	ENSG00000184471.10	transcript	ENST00000328449.6	protein_coding	4/4			chr16	TogoVar
C1QTNF8_chr16_1083226_1101244	1093469	C C	CGCGCGCG others(4): Show CGCGCGCGCGCG	intron_variant intron_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0046 a0001c0001t0012g0046	1	396	0.0025	11	c.4+ others(22): Show c.4+27_*4+28insCGCGCGCGCGC	C1QTNF8	ENSG00000184471.10	transcript	ENST00000328449.6	protein_coding	4/4			chr16	TogoVar
C1orf100_chr1_244347635_244394663	244361235	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0294 a0001c0001t0001g0294	1	452	0.0022	11	c.-13 others(28): Show c.-13-3451_-13-3441dupTTTTTTTTTTT	C1orf100	ENSG00000173728.11	transcript	ENST00000308105.5	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr1	TogoVar
C1orf109_chr1_37676570_37695529	37679973	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp2 NA18954.hp2 NA18522.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0005t0011 a0001c0001t0002 a0001c0005t0011	a0001c0001t0002g0001 a0001c0005t0011g0193 a0001c0001t0002g0001 a0001c0005t0011g0193	2	432	0.0046	11	c.31 others(22): Show c.3149_*3150insTTTTTTTTTTT	C1orf109	ENSG00000116922.15	transcript	ENST00000486637.2	protein_coding		1596		chr1	TogoVar
C1orf127_chr1_10941475_10987076	10951745	A A	AAAAAAAT others(4): Show AAAAAAATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02155.hp1 HG03453.hp2 others(3): Show HG02145.hp1 HG02155.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03834.hp2	a0003 a0014 a0003 a0014	a0003c0006 a0003c0014 a0014c0018 a0003c0006 a0003c0014 a0014c0018	a0003c0006t0004 a0003c0014t0004 a0014c0018t0004 a0003c0006t0004 a0003c0014t0004 a0014c0018t0004	a0003c0006t0004g0034 a0003c0006t0004g0086 a0003c0006t0004g0343 others(3): Show a0003c0006t0004g0034 a0003c0006t0004g0086 a0003c0006t0004g0343 a0003c0006t0004g0367 a0003c0014t0004g0084 a0014c0018t0004g0336	6	392	0.0153	11	c.110 others(30): Show c.1100-1932_1100-1931insATATATTTTTT	C1orf127	ENSG00000175262.15	transcript	ENST00000377004.9	protein_coding	10/12			chr1	TogoVar
C1orf127_chr1_10941475_10987076	10951745	A A	AAAAATAT others(4): Show AAAAATATATAT	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02683.hp2 HG02602.hp1 HG02683.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0004 a0003c0006t0004	a0003c0006t0004g0220 a0003c0006t0004g0257 a0003c0006t0004g0220 a0003c0006t0004g0257	2	392	0.0051	11	c.110 others(30): Show c.1100-1932_1100-1931insATATATATTTT	C1orf127	ENSG00000175262.15	transcript	ENST00000377004.9	protein_coding	10/12			chr1	TogoVar
C1orf127_chr1_10941475_10987076	10979264	G G	GATTACAG others(4): Show GATTACAGGTGT	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0117	1	392	0.0026	11	c.26+ others(26): Show c.26+2737_26+2747dupACACCTGTAAT	C1orf127	ENSG00000175262.15	transcript	ENST00000377004.9	protein_coding	1/12			chr1	TogoVar
C1orf141_chr1_67087165_67139970	67109326	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 NA20129.hp2 HG03209.hp1 NA20129.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0055 a0002c0002t0002g0231 a0002c0002t0002g0055 a0002c0002t0002g0231	2	300	0.0067	11	c.346 others(28): Show c.346+6015_346+6025dupTTTTTTTTTTT	C1orf141	ENSG00000203963.12	transcript	ENST00000684719.1	protein_coding	5/7			chr1	TogoVar
C1orf167_chr1_11757193_11794585	11793450	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0034 a0034	a0034c0038 a0034c0038	a0034c0038t0001 a0034c0038t0001	a0034c0038t0001g0076 a0034c0038t0001g0076	1	350	0.0029	11	c.40 others(22): Show c.4004_*4005insTTTTTTTTTTT	C1orf167	ENSG00000215910.8	transcript	ENST00000688073.1	protein_coding		3866		chr1	TogoVar
C1orf174_chr1_3884133_3905272	3900328	T T	TCCCCCCC others(4): Show TCCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	440	0.0023	11	c.-14 others(20): Show c.-143_-142insGGGGGGGGGGG	C1orf174	ENSG00000198912.12	transcript	ENST00000361605.4	protein_coding		57		chr1	TogoVar
C1orf174_chr1_3884133_3905272	3900328	T T	TTCCCCCC others(4): Show TTCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0023 a0001c0001t0009g0023	1	440	0.0023	11	c.-14 others(20): Show c.-143_-142insGGGGGGGGGGA	C1orf174	ENSG00000198912.12	transcript	ENST00000361605.4	protein_coding		57		chr1	TogoVar
C1orf174_chr1_3884133_3905272	3901892	C C	CTTTTCTT others(4): Show CTTTTCTTTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0007 a0007	a0007c0013 a0007c0013	a0007c0013t0019 a0007c0013t0019	a0007c0013t0019g0048 a0007c0013t0019g0048	1	440	0.0023	11	c.-17 others(22): Show c.-1707_-1706insAGAAAAGAAAA	C1orf174	ENSG00000198912.12	transcript	ENST00000361605.4	protein_coding		1621		chr1	TogoVar
C1orf185_chr1_51097228_51153086	51103449	A A	ACACACAC others(4): Show ACACACACACAC	intron_variant intron_variant	MODIFIER	NA19001.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0149 a0001c0001t0001g0149	1	248	0.0040	11	c.16+ others(26): Show c.16+1200_16+1201insCACACACACAC	C1orf185	ENSG00000204006.11	transcript	ENST00000371759.7	protein_coding	1/4			chr1	TogoVar
C1orf198_chr1_230832119_230873521	230836212	A A	AAAAAAAA others(4): Show AAAAAAAAAAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0221 a0001c0001t0006g0221	1	428	0.0023	11	c.36 others(22): Show c.3639_*3640insGTTTTTTTTTT	C1orf198	ENSG00000119280.17	transcript	ENST00000366663.10	protein_coding		906		chr1	TogoVar
C1orf198_chr1_230832119_230873521	230845216	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 NA18949.hp2 NA18960.hp2 others(5): Show HG02132.hp1 NA18949.hp2 NA18960.hp2 NA18978.hp2 NA19064.hp2 NA19074.hp2 NA19081.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0019 a0001c0001t0002g0033 a0001c0001t0002g0114 others(2): Show a0001c0001t0002g0019 a0001c0001t0002g0033 a0001c0001t0002g0114 a0001c0001t0002g0118 a0001c0001t0002g0119	8	428	0.0187	11	c.385 others(28): Show c.385-1331_385-1321dupTTTTTTTTTTT	C1orf198	ENSG00000119280.17	transcript	ENST00000366663.10	protein_coding	2/3			chr1	TogoVar
C1orf198_chr1_230832119_230873521	230847102	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02615.hp2 HG03041.hp1 HG02451.hp1 HG02615.hp2 HG03041.hp1	a0002 a0002	a0002c0002 a0002c0004 a0002c0002 a0002c0004	a0002c0002t0009 a0002c0004t0009 a0002c0002t0009 a0002c0004t0009	a0002c0002t0009g0036 a0002c0004t0009g0064 a0002c0002t0009g0036 a0002c0004t0009g0064	3	428	0.0070	11	c.385 others(28): Show c.385-3217_385-3207dupTTTTTTTTTTT	C1orf198	ENSG00000119280.17	transcript	ENST00000366663.10	protein_coding	2/3			chr1	TogoVar
C1orf198_chr1_230832119_230873521	230872068	T T	TGTTTTGT others(4): Show TGTTTTGTTTTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp2 HG02572.hp2 HG02615.hp1 others(7): Show HG02056.hp2 HG02572.hp2 HG02615.hp1 HG02723.hp1 HG02976.hp2 HG03453.hp2 HG03486.hp1 HG03540.hp2 NA18906.hp1 NA19240.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0003c0003t0010	a0001c0001t0001g0102 a0001c0001t0002g0109 a0001c0001t0008g0101 others(6): Show a0001c0001t0001g0102 a0001c0001t0002g0109 a0001c0001t0008g0101 a0001c0001t0012g0103 a0001c0001t0014g0096 a0003c0003t0010g0032 a0003c0003t0010g0104 a0003c0003t0010g0105 a0003c0003t0010g0106	10	428	0.0234	11	c.-35 others(22): Show c.-3557_-3556insCAAAACAAAAC	C1orf198	ENSG00000119280.17	transcript	ENST00000366663.10	protein_coding		3548		chr1	TogoVar
C1orf216_chr1_35708877_35723884	35722911	G G	GAGAGATC others(4): Show GAGAGATCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	376	0.0027	11	c.-42 others(22): Show c.-4211_-4210insGAGAGATCTCT	C1orf216	ENSG00000142686.8	transcript	ENST00000270815.5	protein_coding		4028		chr1	TogoVar
C1orf21_chr1_184382029_184634019	184410663	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0102 a0001c0001t0007g0102	1	232	0.0043	11	c.-12 others(32): Show c.-125+23296_-125+23297insATATATATATT	C1orf21	ENSG00000116667.15	transcript	ENST00000235307.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
C1orf21_chr1_184382029_184634019	184410663	A A	ATATATAT others(4): Show ATATATATATTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	232	0.0043	11	c.-12 others(32): Show c.-125+23296_-125+23297insATATATATTTT	C1orf21	ENSG00000116667.15	transcript	ENST00000235307.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
C1orf21_chr1_184382029_184634019	184410663	A A	ATATATAT others(4): Show ATATATATTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	232	0.0043	11	c.-12 others(32): Show c.-125+23296_-125+23297insATATATTTTTT	C1orf21	ENSG00000116667.15	transcript	ENST00000235307.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
C1orf50_chr1_42762249_42784491	42775762	T T	TATATATA others(4): Show TATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0007 a0001c0001t0057g0007	1	418	0.0024	11	c.36 others(20): Show c.368_*369insATATATATATA	C1orf50	ENSG00000164008.17	transcript	ENST00000372525.7	protein_coding	5/5	369		chr1	TogoVar
C20orf141_chr20_2809987_2820830	2810079	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 NA19240.hp2 NA21309.hp1 HG02572.hp2 NA19240.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0002g0002 a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0002g0002	3	414	0.0073	11	c.-49 others(22): Show c.-4972_-4971insTTTTTTTTTTT	C20orf141	ENSG00000258713.3	transcript	ENST00000603872.2	protein_coding		4907		chr20	TogoVar
C20orf144_chr20_33657327_33668908	33658625	C C	CCTGGAGA others(4): Show CCTGGAGATGGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	386	0.0026	11	c.-37 others(22): Show c.-3721_-3720insCTGGAGATGGT	C20orf144	ENSG00000149609.6	transcript	ENST00000375222.4	protein_coding		3701		chr20	TogoVar
C20orf203_chr20_32626625_32678941	32628630	A A	ACACACAC others(4): Show ACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0147 a0001c0001t0001g0147	1	360	0.0028	11	c.69 others(22): Show c.6939_*6940insGTGTGTGTGTG	C20orf203	ENSG00000198547.10	transcript	ENST00000608990.6	protein_coding		2994		chr20	TogoVar
C20orf96_chr20_265863_295750	275951	G G	GCAAAAAG others(4): Show GCAAAAAGATCA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0001 a0002c0007t0001	a0002c0007t0001g0158 a0002c0007t0001g0158	1	410	0.0024	11	c.103 others(25): Show c.1031+6_1031+16dupTGATCTTTTTG	C20orf96	ENSG00000196476.12	transcript	ENST00000360321.7	protein_coding	10/10			chr20	TogoVar
C20orf96_chr20_265863_295750	287908	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02280.hp1 HG02559.hp2 others(4): Show HG02074.hp2 HG02280.hp1 HG02559.hp2 NA19054.hp1 NA19068.hp2 NA19084.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0015 a0001c0001 a0001c0003 a0001c0015	a0001c0001t0001 a0001c0003t0001 a0001c0015t0001 a0001c0001t0001 a0001c0003t0001 a0001c0015t0001	a0001c0001t0001g0038 a0001c0003t0001g0123 a0001c0003t0001g0306 others(4): Show a0001c0001t0001g0038 a0001c0003t0001g0123 a0001c0003t0001g0306 a0001c0003t0001g0347 a0001c0003t0001g0348 a0001c0003t0001g0349 a0001c0015t0001g0353	7	410	0.0171	11	c.187 others(28): Show c.187+1640_187+1650dupTTTTTTTTTTT	C20orf96	ENSG00000196476.12	transcript	ENST00000360321.7	protein_coding	3/10			chr20	TogoVar
C20orf96_chr20_265863_295750	288175	T T	TTTTTCTT others(4): Show TTTTTCTTTTTC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03130.hp1 HG02965.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0034 a0001c0001t0007g0036 a0001c0001t0007g0034 a0001c0001t0007g0036	2	410	0.0049	11	c.187 others(28): Show c.187+1383_187+1384insGAAAAAGAAAA	C20orf96	ENSG00000196476.12	transcript	ENST00000360321.7	protein_coding	3/10			chr20	TogoVar
C21orf58_chr21_46296130_46328870	46298434	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG01515.hp1 HG00323.hp2 HG01515.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0001 a0001c0001t0003 a0002c0002t0001	a0001c0001t0003g0318 a0002c0002t0001g0169 a0001c0001t0003g0318 a0002c0002t0001g0169	2	378	0.0053	11	c.35 others(22): Show c.3564_*3565insAAAAAAAAAAA	C21orf58	ENSG00000160298.18	transcript	ENST00000291691.12	protein_coding		2695		chr21	TogoVar
C21orf58_chr21_46296130_46328870	46303708	A A	AAATATAT others(4): Show AAATATATATAT	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0318 a0001c0001t0003g0318	1	378	0.0027	11	c.722 others(28): Show c.722-1133_722-1132insATATATATATT	C21orf58	ENSG00000160298.18	transcript	ENST00000291691.12	protein_coding	6/7			chr21	TogoVar
C21orf58_chr21_46296130_46328870	46303746	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG01517.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0317 a0001c0001t0003g0317	1	378	0.0027	11	c.722 others(28): Show c.722-1171_722-1170insTATATATATAT	C21orf58	ENSG00000160298.18	transcript	ENST00000291691.12	protein_coding	6/7			chr21	TogoVar
C22orf42_chr22_32144006_32164303	32147782	T T	TCTGTCCC others(4): Show TCTGTCCCTTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0076 a0002c0002t0002g0076	1	398	0.0025	11	c.17 others(22): Show c.1757_*1758insTAAAGGGACAG	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1223		chr22	TogoVar
C22orf42_chr22_32144006_32164303	32147884	G G	GTATATAT others(4): Show GTATATATATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02572.hp1 HG02717.hp2 others(1): Show HG02486.hp1 HG02572.hp1 HG02717.hp2 HG03540.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0013 a0003c0003t0002g0035 a0003c0003t0002g0013 a0003c0003t0002g0035	4	398	0.0101	11	c.16 others(22): Show c.1655_*1656insTAATATATATA	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1121		chr22	TogoVar
C22orf42_chr22_32144006_32164303	32147898	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0055 a0002c0002t0004g0055	1	398	0.0025	11	c.16 others(22): Show c.1641_*1642insAAAAAAAAAAA	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1107		chr22	TogoVar
C22orf42_chr22_32144006_32164303	32147902	A A	ATATATAT others(4): Show ATATATATTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG01258.hp1 HG01361.hp2 others(3): Show HG01257.hp1 HG01258.hp1 HG01361.hp2 HG02056.hp1 HG03654.hp1 HG03710.hp2	a0002 a0011 a0002 a0011	a0002c0002 a0011c0014 a0002c0002 a0011c0014	a0002c0002t0001 a0002c0002t0002 a0011c0014t0001 a0002c0002t0001 a0002c0002t0002 a0011c0014t0001	a0002c0002t0001g0002 a0002c0002t0002g0020 a0011c0014t0001g0067 a0002c0002t0001g0002 a0002c0002t0002g0020 a0011c0014t0001g0067	6	398	0.0151	11	c.16 others(22): Show c.1637_*1638insAAAAATATATA	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1103		chr22	TogoVar
C22orf42_chr22_32144006_32164303	32147902	A A	ATATATTT others(4): Show ATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	398	0.0025	11	c.16 others(22): Show c.1637_*1638insAAAAAAATATA	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1103		chr22	TogoVar
C22orf42_chr22_32144006_32164303	32147903	T T	TATATATA others(4): Show TATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0008 a0008	a0008c0017 a0008c0017	a0008c0017t0002 a0008c0017t0002	a0008c0017t0002g0121 a0008c0017t0002g0121	1	398	0.0025	11	c.16 others(22): Show c.1636_*1637insTATATATATAT	C22orf42	ENSG00000205856.4	transcript	ENST00000382097.4	protein_coding		1102		chr22	TogoVar
C2CD2_chr21_41880112_41959018	41948870	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01516.hp2 HG01517.hp2 others(2): Show HG01361.hp1 HG01516.hp2 HG01517.hp2 HG01981.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0039	a0001c0001t0002 a0001c0002t0003 a0001c0004t0005 others(1): Show a0001c0001t0002 a0001c0002t0003 a0001c0004t0005 a0001c0039t0013	a0001c0001t0002g0300 a0001c0001t0002g0301 a0001c0002t0003g0299 others(2): Show a0001c0001t0002g0300 a0001c0001t0002g0301 a0001c0002t0003g0299 a0001c0004t0005g0138 a0001c0039t0013g0302	5	396	0.0126	11	c.279 others(28): Show c.279+4489_279+4499dupAAAAAAAAAAA	C2CD2	ENSG00000157617.17	transcript	ENST00000380486.4	protein_coding	1/13			chr21	TogoVar
C2CD6_chr2_201482421_201624178	201515201	A A	ATAGTTTT others(4): Show ATAGTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	270	0.0037	11	c.150 others(32): Show c.1507-19233_1507-19232insAAAAAAAACTA	C2CD6	ENSG00000155754.15	transcript	ENST00000439140.6	protein_coding	13/15			chr2	TogoVar

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