Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
C2CD6_chr2_201482421_201624178	201575034	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0032 a0032	a0032c0037 a0032c0037	a0032c0037t0001 a0032c0037t0001	a0032c0037t0001g0265 a0032c0037t0001g0265	1	270	0.0037	11	c.684 others(26): Show c.684+237_684+247dupTTTTTTTTTTT	C2CD6	ENSG00000155754.15	transcript	ENST00000439140.6	protein_coding	6/15			chr2	TogoVar
C2_chr6_31922717_31950672	31941814	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG02055.hp1 HG02896.hp2 others(8): Show HG01361.hp1 HG02055.hp1 HG02896.hp2 HG02970.hp1 HG03098.hp1 HG03710.hp2 HG03831.hp1 HG03927.hp1 HG04228.hp2 NA18939.hp2 NA18988.hp2	a0001 a0008 a0001 a0008	a0001c0002 a0008c0009 a0001c0002 a0008c0009	a0001c0002t0001 a0008c0009t0001 a0001c0002t0001 a0008c0009t0001	a0001c0002t0001g0057 a0001c0002t0001g0117 a0001c0002t0001g0188 others(7): Show a0001c0002t0001g0057 a0001c0002t0001g0117 a0001c0002t0001g0188 a0001c0002t0001g0192 a0001c0002t0001g0194 a0001c0002t0001g0196 a0001c0002t0001g0197 a0001c0002t0001g0199 a0001c0002t0001g0201 a0008c0009t0001g0193	11	395	0.0279	11	c.122 others(30): Show c.1220-1133_1220-1123dupTTTTTTTTTTT	C2	ENSG00000166278.16	transcript	ENST00000299367.10	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr6	TogoVar
C2orf15_chr2_99136707_99156669	99136798	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0036 a0001c0001t0004g0036	1	414	0.0024	11	c.-54 others(22): Show c.-5425_-5424insAAAAAAAAAAA	C2orf15	ENSG00000273045.7	transcript	ENST00000650052.2	protein_coding		4908		chr2	TogoVar
C2orf15_chr2_99136707_99156669	99144649	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01261.hp1 HG02027.hp2 others(10): Show HG01109.hp2 HG01261.hp1 HG02027.hp2 HG02896.hp2 HG02897.hp2 HG03453.hp2 HG03688.hp2 NA18950.hp2 NA18952.hp1 NA18959.hp2 NA18975.hp2 NA19000.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0045 a0001c0001t0001g0055 a0001c0001t0001g0056 others(9): Show a0001c0001t0001g0045 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0006g0024 a0001c0001t0006g0088	13	414	0.0314	11	c.-16 others(30): Show c.-169+2260_-169+2270dupAAAAAAAAAAA	C2orf15	ENSG00000273045.7	transcript	ENST00000650052.2	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr2	TogoVar
C2orf16_chr2_27532386_27587722	27539749	A A	ACCCCCCC others(4): Show ACCCCCCCCCCC	intron_variant intron_variant	MODIFIER	HG02074.hp1 NA18943.hp1 NA18951.hp1 others(3): Show HG02074.hp1 NA18943.hp1 NA18951.hp1 NA18977.hp2 NA19055.hp2 NA20300.hp2	a0001 a0041 a0001 a0041	a0001c0001 a0041c0040 a0001c0001 a0041c0040	a0001c0001t0001 a0041c0040t0001 a0001c0001t0001 a0041c0040t0001	a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 others(3): Show a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0041c0040t0001g0145	6	326	0.0184	11	c.144 others(28): Show c.144+2187_144+2188insCCCCCCCCCCC	C2orf16	ENSG00000221843.6	transcript	ENST00000447166.3	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr2	TogoVar
C2orf50_chr2_11128128_11156317	11148732	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01175.hp1 HG02145.hp1 HG02257.hp1 others(4): Show HG01175.hp1 HG02145.hp1 HG02257.hp1 HG02486.hp1 HG02559.hp1 HG03195.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0002 a0001c0001 a0003c0002	a0001c0001t0021 a0001c0001t0035 a0001c0001t0051 others(2): Show a0001c0001t0021 a0001c0001t0035 a0001c0001t0051 a0001c0001t0060 a0003c0002t0066	a0001c0001t0021g0004 a0001c0001t0021g0010 a0001c0001t0021g0014 others(4): Show a0001c0001t0021g0004 a0001c0001t0021g0010 a0001c0001t0021g0014 a0001c0001t0035g0180 a0001c0001t0051g0014 a0001c0001t0060g0198 a0003c0002t0066g0063	7	380	0.0184	11	c.46 others(22): Show c.4631_*4641dupTTTTTTTTTTT	C2orf50	ENSG00000150873.12	transcript	ENST00000381585.8	protein_coding	3/3	4642	INFO_REALIGN_3_PRIME	chr2	TogoVar
C3AR1_chr12_8051844_8071359	8062949	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0116 a0001c0001t0002g0116	1	424	0.0024	11	c.-10 others(28): Show c.-10-2765_-10-2755dupAAAAAAAAAAA	C3AR1	ENSG00000171860.5	transcript	ENST00000307637.5	protein_coding	1/1			chr12	TogoVar
C3_chr19_6672704_6725650	6708860	A A	AGATCGCG others(4): Show AGATCGCGTGTT	intron_variant intron_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0099 a0001c0002t0001g0099	1	370	0.0027	11	c.184 others(28): Show c.1845+823_1845+824insAACACGCGATC	C3	ENSG00000125730.18	transcript	ENST00000245907.11	protein_coding	14/40			chr19	TogoVar
C3orf18_chr3_50553025_50572747	50563628	C C	CCGCATTC others(4): Show CCGCATTCTCCT	intron_variant intron_variant	MODIFIER	NA19078.hp2 NA19078.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0028 a0001c0001t0010g0028	1	382	0.0026	11	c.234 others(28): Show c.234+1837_234+1838insAGGAGAATGCG	C3orf18	ENSG00000088543.15	transcript	ENST00000357203.8	protein_coding	3/5			chr3	TogoVar
C3orf33_chr3_155757617_155811278	155793809	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0055 a0001c0002t0005g0055	1	406	0.0025	11	c.174 others(28): Show c.174+8712_174+8722dupTTTTTTTTTTT	C3orf33	ENSG00000174928.16	transcript	ENST00000340171.7	protein_coding	2/4			chr3	TogoVar
C3orf33_chr3_155757617_155811278	155800610	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01517.hp1 NA18949.hp1 others(1): Show HG00735.hp1 HG01517.hp1 NA18949.hp1 NA18979.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0154 others(1): Show a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0154 a0001c0002t0002g0155	4	406	0.0099	11	c.174 others(28): Show c.174+1911_174+1921dupTTTTTTTTTTT	C3orf33	ENSG00000174928.16	transcript	ENST00000340171.7	protein_coding	2/4			chr3	TogoVar
C3orf38_chr3_88144959_88162965	88162142	G G	GAAAAAAA others(4): Show GAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02922.hp2 HG03098.hp2 others(1): Show HG02257.hp1 HG02922.hp2 HG03098.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0001 a0001c0001t0005g0010 a0001c0001t0001g0001 a0001c0001t0005g0010	4	320	0.0125	11	c.55 others(22): Show c.5507_*5508insAAAAAAAAAAA	C3orf38	ENSG00000179021.10	transcript	ENST00000318887.8	protein_coding		4178		chr3	TogoVar
C3orf70_chr3_185071838_185158060	185075476	C C	CAGCTACT others(4): Show CAGCTACTCAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18978.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0084 a0001c0001t0009g0084	1	388	0.0026	11	c.75 others(22): Show c.7530_*7531insCCTGAGTAGCT	C3orf70	ENSG00000187068.3	transcript	ENST00000335012.3	protein_coding		1361		chr3	TogoVar
C3orf70_chr3_185071838_185158060	185079280	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03195.hp2 HG03209.hp2 HG03195.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0120 a0001c0001t0121 a0001c0001t0120 a0001c0001t0121	a0001c0001t0120g0149 a0001c0001t0121g0148 a0001c0001t0120g0149 a0001c0001t0121g0148	2	388	0.0052	11	c.37 others(22): Show c.3716_*3726dupTTTTTTTTTTT	C3orf70	ENSG00000187068.3	transcript	ENST00000335012.3	protein_coding	2/2	3726		chr3	TogoVar
C3orf70_chr3_185071838_185158060	185091964	T T	TATATATA others(4): Show TATATATATATA	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03710.hp2 HG03654.hp1 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0024 a0001c0001t0012 a0001c0001t0024	a0001c0001t0012g0168 a0001c0001t0024g0065 a0001c0001t0012g0168 a0001c0001t0024g0065	2	388	0.0052	11	c.197 others(28): Show c.197-8402_197-8401insTATATATATAT	C3orf70	ENSG00000187068.3	transcript	ENST00000335012.3	protein_coding	1/1			chr3	TogoVar
C3orf70_chr3_185071838_185158060	185113285	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01175.hp2 HG02109.hp1 others(14): Show HG00735.hp1 HG01175.hp2 HG02109.hp1 HG02145.hp2 HG02622.hp1 HG02630.hp1 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG03041.hp2 HG03098.hp2 HG03225.hp1 HG03471.hp1 HG03486.hp1 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0004 a0001c0001 a0001c0005 a0003c0004	a0001c0001t0016 a0001c0001t0025 a0001c0001t0037 others(6): Show a0001c0001t0016 a0001c0001t0025 a0001c0001t0037 a0001c0001t0115 a0001c0001t0124 a0001c0001t0125 a0001c0001t0127 a0001c0005t0148 a0003c0004t0027	a0001c0001t0016g0157 a0001c0001t0016g0158 a0001c0001t0016g0326 others(14): Show a0001c0001t0016g0157 a0001c0001t0016g0158 a0001c0001t0016g0326 a0001c0001t0016g0339 a0001c0001t0016g0340 a0001c0001t0025g0153 a0001c0001t0025g0156 a0001c0001t0037g0352 a0001c0001t0037g0353 a0001c0001t0115g0011 a0001c0001t0124g0022 a0001c0001t0125g0023 a0001c0001t0127g0024 a0001c0005t0148g0387 a0003c0004t0027g0009 a0003c0004t0027g0010 a0003c0004t0027g0356	17	388	0.0438	11	c.197 others(30): Show c.197-29723_197-29722insTTTTTTTTTTT	C3orf70	ENSG00000187068.3	transcript	ENST00000335012.3	protein_coding	1/1			chr3	TogoVar
C3orf80_chr3_160220422_160233213	160223765	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00558.hp2 HG01168.hp1 others(19): Show HG00423.hp1 HG00558.hp2 HG01168.hp1 HG02451.hp2 HG02523.hp2 HG02717.hp1 HG03209.hp2 HG03453.hp2 HG03540.hp2 HG03710.hp2 HG03927.hp2 NA18939.hp1 NA18940.hp2 NA18960.hp1 NA18960.hp2 NA18970.hp2 NA18997.hp2 NA19004.hp1 NA19011.hp1 NA19064.hp1 NA19074.hp1 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	22	410	0.0537	11	c.-18 others(22): Show c.-1871_-1870insAAAAAAAAAAA	C3orf80	ENSG00000180044.6	transcript	ENST00000326474.5	protein_coding		1656		chr3	TogoVar
C4BPA_chr1_207099233_207149972	207118224	T T	TATCTATC others(4): Show TATCTATCTATC	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02965.hp2 HG03471.hp1 others(1): Show HG02615.hp2 HG02965.hp2 HG03471.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0257 others(1): Show a0001c0001t0001g0030 a0001c0001t0001g0039 a0001c0001t0001g0257 a0001c0001t0001g0261	4	342	0.0117	11	c.428 others(28): Show c.428+2710_428+2720dupATCTATCTATC	C4BPA	ENSG00000123838.11	transcript	ENST00000367070.8	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
C4BPA_chr1_207099233_207149972	207118236	T T	TATCTATC others(4): Show TATCTATCTATC	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0298 a0001c0004t0001g0298	1	342	0.0029	11	c.428 others(28): Show c.428+2731_428+2741dupTCATCTATCTA	C4BPA	ENSG00000123838.11	transcript	ENST00000367070.8	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
C4orf17_chr4_99506021_99547303	99506695	T T	TTTCTTTC others(4): Show TTTCTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0023 a0003c0002t0001g0023	1	386	0.0026	11	c.-46 others(22): Show c.-4671_-4670insTTCTTTCTTTC	C4orf17	ENSG00000138813.10	transcript	ENST00000326581.9	protein_coding		4325		chr4	TogoVar
C4orf17_chr4_99506021_99547303	99518506	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0267 a0002c0004t0001g0267	1	386	0.0026	11	c.128 others(28): Show c.128-3994_128-3993insTATATATATAT	C4orf17	ENSG00000138813.10	transcript	ENST00000326581.9	protein_coding	2/8			chr4	TogoVar
C4orf17_chr4_99506021_99547303	99518514	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0001 a0003c0008t0001	a0003c0008t0001g0093 a0003c0008t0001g0093	1	386	0.0026	11	c.128 others(28): Show c.128-3986_128-3985insTATATATATAT	C4orf17	ENSG00000138813.10	transcript	ENST00000326581.9	protein_coding	2/8			chr4	TogoVar
C4orf19_chr4_37448925_37598510	37481464	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02129.hp1 HG03139.hp1 others(3): Show HG02074.hp1 HG02129.hp1 HG03139.hp1 HG03239.hp1 NA18977.hp2 NA19084.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0027 a0002c0002t0004	a0001c0001t0001g0273 a0001c0001t0002g0268 a0001c0001t0003g0183 others(3): Show a0001c0001t0001g0273 a0001c0001t0002g0268 a0001c0001t0003g0183 a0001c0001t0006g0309 a0001c0001t0027g0184 a0002c0002t0004g0294	6	354	0.0170	11	c.-73 others(30): Show c.-73+27450_-73+27460dupAAAAAAAAAAA	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf19_chr4_37448925_37598510	37508683	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0323 a0001c0001t0001g0323	1	354	0.0028	11	c.-72 others(30): Show c.-72-49336_-72-49335insTTTTTTTTTTT	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf19_chr4_37448925_37598510	37596736	A A	ATATATAT others(4): Show ATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0150 a0001c0001t0003g0150	1	354	0.0028	11	c.57 others(22): Show c.5736_*5737insTATATATATAT	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding		3227		chr4	TogoVar
C4orf19_chr4_37448925_37598510	37596736	A A	ATATATAT others(4): Show ATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0071 a0001c0001t0003g0071	1	354	0.0028	11	c.57 others(22): Show c.5736_*5737insTATATATATTT	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding		3227		chr4	TogoVar
C4orf19_chr4_37448925_37598510	37596737	T T	TATATATA others(4): Show TATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp2 HG02895.hp1 NA18983.hp2 others(1): Show HG01069.hp2 HG02895.hp1 NA18983.hp2 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0030 a0001c0001t0001 a0001c0001t0030	a0001c0001t0001g0098 a0001c0001t0001g0212 a0001c0001t0001g0270 others(1): Show a0001c0001t0001g0098 a0001c0001t0001g0212 a0001c0001t0001g0270 a0001c0001t0030g0336	4	354	0.0113	11	c.57 others(22): Show c.5737_*5738insATATATATATA	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding		3228		chr4	TogoVar
C4orf19_chr4_37448925_37598510	37598252	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18987.hp2 NA19000.hp2 NA18987.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0078 a0001c0001t0016g0151 a0001c0001t0016g0078 a0001c0001t0016g0151	2	354	0.0057	11	c.72 others(22): Show c.7252_*7253insAAAAAAAAAAA	C4orf19	ENSG00000154274.15	transcript	ENST00000381980.9	protein_coding		4743		chr4	TogoVar
C4orf45_chr4_158888134_159040229	158911384	A A	AAATAAAT others(4): Show AAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03225.hp1 HG02647.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0159 a0001c0001t0001g0017 a0001c0001t0001g0159	2	264	0.0076	11	c.546 others(28): Show c.546+3785_546+3786insATTTATTTATT	C4orf45	ENSG00000164123.7	transcript	ENST00000434826.3	protein_coding	4/4			chr4	TogoVar
C4orf45_chr4_158888134_159040229	158979789	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0024 a0001c0002t0001g0024	1	264	0.0038	11	c.65- others(26): Show c.65-6489_65-6479dupAAAAAAAAAAA	C4orf45	ENSG00000164123.7	transcript	ENST00000434826.3	protein_coding	1/4			chr4	TogoVar
C4orf45_chr4_158888134_159040229	158984230	G G	GATCAACG others(4): Show GATCAACGAGAC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0129 a0001c0001t0001g0130	2	264	0.0076	11	c.65- others(28): Show c.65-10920_65-10919insGTCTCGTTGAT	C4orf45	ENSG00000164123.7	transcript	ENST00000434826.3	protein_coding	1/4			chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443342	A A	ATATATAT others(4): Show ATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02129.hp1 HG02735.hp2 others(3): Show HG01358.hp2 HG02129.hp1 HG02735.hp2 NA18966.hp2 NA19240.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0092 a0001c0001t0001g0097 a0001c0001t0001g0098 others(3): Show a0001c0001t0001g0092 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0184 a0001c0001t0001g0208 a0001c0001t0002g0262	6	358	0.0168	11	c.715 others(28): Show c.715-1621_715-1620insATATATATATT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443342	A A	ATATATAT others(4): Show ATATATATATTT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01071.hp1 HG01167.hp2 others(9): Show HG00639.hp2 HG01071.hp1 HG01167.hp2 HG01255.hp1 HG02004.hp2 HG02559.hp2 HG03491.hp2 NA18747.hp2 NA18969.hp2 NA18974.hp1 NA18974.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0139 others(9): Show a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0139 a0001c0001t0001g0158 a0001c0001t0001g0193 a0001c0001t0001g0201 a0001c0001t0001g0207 a0001c0001t0003g0119 a0001c0001t0003g0127 a0001c0001t0003g0178 a0001c0001t0003g0213 a0001c0001t0003g0218	12	358	0.0335	11	c.715 others(28): Show c.715-1621_715-1620insATATATATTTT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443342	A A	ATATATAT others(4): Show ATATATATTTTT	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01496.hp1 HG01496.hp2 others(6): Show HG01256.hp1 HG01496.hp1 HG01496.hp2 HG02027.hp1 HG02027.hp2 HG02523.hp1 HG03669.hp1 HG03704.hp1 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0123 a0001c0001t0001g0143 others(6): Show a0001c0001t0001g0115 a0001c0001t0001g0123 a0001c0001t0001g0143 a0001c0001t0001g0196 a0001c0001t0001g0221 a0001c0001t0001g0265 a0001c0001t0001g0269 a0001c0001t0001g0276 a0001c0001t0001g0302	9	358	0.0251	11	c.715 others(28): Show c.715-1621_715-1620insATATATTTTTT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443342	A A	ATATATTT others(4): Show ATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG04228.hp1 NA18952.hp2 others(2): Show HG00735.hp1 HG04228.hp1 NA18952.hp2 NA18957.hp2 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0151 a0001c0001t0001g0171 a0001c0001t0001g0180 others(2): Show a0001c0001t0001g0151 a0001c0001t0001g0171 a0001c0001t0001g0180 a0001c0001t0001g0219 a0001c0001t0003g0172	5	358	0.0140	11	c.715 others(28): Show c.715-1621_715-1620insATATTTTTTTT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443342	A A	ATATTTTT others(4): Show ATATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03139.hp2 HG02145.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0270 a0001c0001t0001g0121 a0001c0001t0001g0270	2	358	0.0056	11	c.715 others(28): Show c.715-1621_715-1620insATTTTTTTTTT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf47_chr4_185421254_185454826	185443921	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	358	0.0028	11	c.715 others(28): Show c.715-1010_715-1000dupTTTTTTTTTTT	C4orf47	ENSG00000205129.9	transcript	ENST00000378850.5	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr4	TogoVar
C4orf48_chr4_2036995_2048964	2048179	T T	TGAAAAAG others(4): Show TGAAAAAGAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	392	0.0026	11	c.42 others(22): Show c.4253_*4254insGAAAAAGAAGA	C4orf48	ENSG00000243449.8	transcript	ENST00000409248.10	protein_coding		4216		chr4	TogoVar
C4orf50_chr4_5954375_6023431	5995474	A A	ACACACAC others(4): Show ACACACACACAC	intron_variant intron_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0270 a0001c0001t0000g0270	1	346	0.0029	11	c.964 others(26): Show c.964-999_964-998insGTGTGTGTGTG	C4orf50	ENSG00000181215.17	transcript	ENST00000711657.1	protein_coding	3/11			chr4	TogoVar
C4orf54_chr4_99631529_99662828	99643792	A A	ACACACAC others(4): Show ACACACACACCC	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0151 a0001c0001t0001g0151	1	392	0.0026	11	c.37 others(28): Show c.37-2597_*37-2596insGGGTGTGTGTG	C4orf54	ENSG00000248713.2	transcript	ENST00000511828.2	protein_coding	2/2			chr4	TogoVar
C4orf54_chr4_99631529_99662828	99643792	A A	ACACACCC others(4): Show ACACACCCCCCC	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	392	0.0026	11	c.37 others(28): Show c.37-2597_*37-2596insGGGGGGGTGTG	C4orf54	ENSG00000248713.2	transcript	ENST00000511828.2	protein_coding	2/2			chr4	TogoVar
C4orf54_chr4_99631529_99662828	99660485	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp1 HG00733.hp2 HG01928.hp1 others(34): Show HG00621.hp1 HG00733.hp2 HG01928.hp1 HG01981.hp2 HG02056.hp1 HG02647.hp2 HG02723.hp2 HG02896.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03669.hp1 HG03704.hp1 HG03927.hp2 HG04228.hp2 NA18940.hp2 NA18941.hp2 NA18952.hp1 NA18969.hp2 NA18972.hp2 NA18975.hp1 NA18978.hp1 NA18986.hp2 NA18988.hp2 NA18993.hp2 NA18999.hp2 NA19001.hp2 NA19054.hp1 NA19066.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp2 NA19083.hp2 NA19087.hp2 NA19088.hp1 NA19090.hp1	a0002 a0004 a0009 a0002 a0004 a0009	a0002c0002 a0004c0004 a0009c0009 a0002c0002 a0004c0004 a0009c0009	a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 others(4): Show a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 a0002c0002t0015 a0002c0002t0044 a0004c0004t0002 a0009c0009t0011	a0002c0002t0001g0205 a0002c0002t0001g0222 a0002c0002t0001g0224 others(21): Show a0002c0002t0001g0205 a0002c0002t0001g0222 a0002c0002t0001g0224 a0002c0002t0001g0225 a0002c0002t0001g0226 a0002c0002t0003g0003 a0002c0002t0003g0004 a0002c0002t0003g0005 a0002c0002t0003g0015 a0002c0002t0003g0043 a0002c0002t0003g0044 a0002c0002t0003g0049 a0002c0002t0003g0203 a0002c0002t0003g0209 a0002c0002t0003g0210 a0002c0002t0003g0217 a0002c0002t0003g0230 a0002c0002t0003g0231 a0002c0002t0004g0045 a0002c0002t0004g0213 a0002c0002t0015g0051 a0002c0002t0044g0232 a0004c0004t0002g0084 a0009c0009t0011g0241	37	392	0.0944	11	c.-30 others(22): Show c.-3023_-3022insTTTTTTTTTTT	C4orf54	ENSG00000248713.2	transcript	ENST00000511828.2	protein_coding		2658		chr4	TogoVar
C5AR2_chr19_47327175_47352329	47335771	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01070.hp1 NA19043.hp1 HG01070.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0027 a0001c0001t0001 a0002c0002t0027	a0001c0001t0001g0241 a0002c0002t0027g0102 a0001c0001t0001g0241 a0002c0002t0027g0102	2	406	0.0049	11	c.-16 others(28): Show c.-16+3443_-16+3453dupAAAAAAAAAAA	C5AR2	ENSG00000134830.6	transcript	ENST00000595464.3	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr19	TogoVar
C5_chr9_120947335_121055275	121024268	G G	GGGGGAGG others(4): Show GGGGGAGGGGGA	intron_variant intron_variant	MODIFIER	HG02027.hp2 NA18946.hp1 NA19003.hp2 others(1): Show HG02027.hp2 NA18946.hp1 NA19003.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0183 a0001c0001t0001g0190 others(1): Show a0001c0001t0001g0075 a0001c0001t0001g0183 a0001c0001t0001g0190 a0001c0001t0001g0192	4	276	0.0145	11	c.100 others(28): Show c.1001-760_1001-750dupTCCCCCTCCCC	C5	ENSG00000106804.10	transcript	ENST00000223642.3	protein_coding	9/40			chr9	TogoVar
C5_chr9_120947335_121055275	121024308	G G	GGGGGAGG others(4): Show GGGGGAGGGGGA	intron_variant intron_variant	MODIFIER	HG03486.hp1 NA18942.hp2 NA20300.hp1 HG03486.hp1 NA18942.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0068 a0002c0002t0001g0150 a0002c0002t0001g0222 a0001c0001t0001g0068 a0002c0002t0001g0150 a0002c0002t0001g0222	3	276	0.0109	11	c.100 others(28): Show c.1001-800_1001-790dupTCCCCCTCCCC	C5	ENSG00000106804.10	transcript	ENST00000223642.3	protein_coding	9/40			chr9	TogoVar
C5orf22_chr5_31527301_31560053	31542467	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00738.hp2 HG01261.hp2 others(18): Show HG00639.hp2 HG00738.hp2 HG01261.hp2 HG01346.hp1 HG01884.hp1 HG01981.hp1 HG02027.hp2 HG02148.hp1 HG02300.hp2 HG03139.hp1 NA18948.hp2 NA18949.hp1 NA18957.hp1 NA18961.hp2 NA18980.hp1 NA18990.hp2 NA18991.hp2 NA19067.hp1 NA19081.hp2 NA19082.hp2 NA19083.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0005 a0001c0001t0006 a0002c0002t0003 others(1): Show a0001c0001t0005 a0001c0001t0006 a0002c0002t0003 a0003c0003t0005	a0001c0001t0005g0059 a0001c0001t0005g0061 a0001c0001t0006g0046 others(14): Show a0001c0001t0005g0059 a0001c0001t0005g0061 a0001c0001t0006g0046 a0001c0001t0006g0115 a0001c0001t0006g0162 a0001c0001t0006g0163 a0001c0001t0006g0165 a0001c0001t0006g0166 a0001c0001t0006g0171 a0002c0002t0003g0030 a0002c0002t0003g0050 a0002c0002t0003g0122 a0002c0002t0003g0146 a0002c0002t0003g0148 a0002c0002t0003g0190 a0003c0003t0005g0068 a0003c0003t0005g0182	21	404	0.0520	11	c.992 others(28): Show c.992+1066_992+1076dupAAAAAAAAAAA	C5orf22	ENSG00000082213.18	transcript	ENST00000325366.14	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr5	TogoVar
C6_chr5_41137116_41218532	41200891	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03704.hp2 HG00741.hp1 HG03704.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0171 a0002c0002t0001g0172 a0002c0002t0001g0171 a0002c0002t0001g0172	2	402	0.0050	11	c.300 others(26): Show c.300+656_300+666dupAAAAAAAAAAA	C6	ENSG00000039537.16	transcript	ENST00000337836.10	protein_coding	3/17			chr5	TogoVar
C6orf132_chr6_42096119_42147620	42117923	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02015.hp1 HG02027.hp2 others(5): Show HG00621.hp2 HG02015.hp1 HG02027.hp2 HG02083.hp1 NA18972.hp2 NA18991.hp2 NA19003.hp2 NA19085.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0070 a0002c0002t0002g0141 a0002c0002t0002g0195 others(5): Show a0002c0002t0002g0070 a0002c0002t0002g0141 a0002c0002t0002g0195 a0002c0002t0002g0264 a0002c0002t0002g0275 a0002c0002t0002g0276 a0002c0002t0002g0280 a0002c0002t0002g0281	8	364	0.0220	11	c.253 others(28): Show c.253-7643_253-7633dupTTTTTTTTTTT	C6orf132	ENSG00000188112.10	transcript	ENST00000341865.9	protein_coding	2/4			chr6	TogoVar
C6orf132_chr6_42096119_42147620	42138850	A A	ACACACAC others(4): Show ACACACACACAC	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0146 a0001c0001t0001g0146	1	364	0.0028	11	c.145 others(28): Show c.145+3449_145+3450insGTGTGTGTGTG	C6orf132	ENSG00000188112.10	transcript	ENST00000341865.9	protein_coding	1/4			chr6	TogoVar
C6orf15_chr6_31106223_31117575	31113721	T T	TGTTGAAG others(4): Show TGTTGAAGCTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01099.hp1 HG01167.hp2 others(33): Show HG01074.hp1 HG01099.hp1 HG01167.hp2 HG01175.hp1 HG01243.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp2 HG02109.hp2 HG02145.hp1 HG02257.hp2 HG02258.hp2 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02965.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03486.hp1 HG03516.hp1 HG03516.hp2 HG06807.hp1 NA18522.hp2 NA19030.hp2 NA20300.hp2 NA20805.hp1	a0001 a0005 a0007 others(2): Show a0001 a0005 a0007 a0008 a0012	a0001c0001 a0005c0005 a0007c0007 others(2): Show a0001c0001 a0005c0005 a0007c0007 a0008c0009 a0012c0013	a0001c0001t0001 a0005c0005t0002 a0007c0007t0002 others(2): Show a0001c0001t0001 a0005c0005t0002 a0007c0007t0002 a0008c0009t0002 a0012c0013t0002	a0001c0001t0001g0001 a0005c0005t0002g0006 a0007c0007t0002g0008 others(2): Show a0001c0001t0001g0001 a0005c0005t0002g0006 a0007c0007t0002g0008 a0008c0009t0002g0010 a0012c0013t0002g0014	36	437	0.0824	11	c.-11 others(22): Show c.-1167_-1166insCCAGCTTCAAC	C6orf15	ENSG00000204542.3	transcript	ENST00000259870.4	protein_coding		1147		chr6	TogoVar

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