Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNTN5_chr11_99015949_100363885	99201351	T T	TTCCTTCC others(4): Show TTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02258.hp2 NA19000.hp1 HG00735.hp1 HG02258.hp2 NA19000.hp1	a0005 a0006 a0005 a0006	a0005c0005 a0006c0006 a0005c0005 a0006c0006	a0005c0005t0003 a0006c0006t0009 a0006c0006t0014 a0005c0005t0003 a0006c0006t0009 a0006c0006t0014	a0005c0005t0003g0045 a0006c0006t0009g0042 a0006c0006t0014g0058 a0005c0005t0003g0045 a0006c0006t0009g0042 a0006c0006t0014g0058	3	66	0.0455	11	c.-20 others(34): Show c.-209-123994_-209-123993insCCTTCCTTCCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99358255	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02004.hp2 NA19043.hp1 HG01496.hp2 HG02004.hp2 NA19043.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0011c0009 a0001c0001 a0011c0009	a0001c0001t0001 a0001c0001t0012 a0011c0009t0005 a0001c0001t0001 a0001c0001t0012 a0011c0009t0005	a0001c0001t0001g0004 a0001c0001t0012g0018 a0011c0009t0005g0056 a0001c0001t0001g0004 a0001c0001t0012g0018 a0011c0009t0005g0056	3	66	0.0455	11	c.-71 others(30): Show c.-71+32781_-71+32791dupTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99382845	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01081.hp1 HG01496.hp1 others(4): Show HG00733.hp2 HG01081.hp1 HG01496.hp1 HG02109.hp1 HG06807.hp1 NA18957.hp2 NA19070.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0005 a0006	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005 a0006c0006	a0001c0001t0014 a0002c0002t0021 a0002c0002t0022 others(4): Show a0001c0001t0014 a0002c0002t0021 a0002c0002t0022 a0003c0003t0002 a0005c0005t0010 a0005c0005t0018 a0006c0006t0013	a0001c0001t0014g0016 a0002c0002t0021g0055 a0002c0002t0022g0013 others(4): Show a0001c0001t0014g0016 a0002c0002t0021g0055 a0002c0002t0022g0013 a0003c0003t0002g0002 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0013g0025	7	66	0.1061	11	c.-71 others(30): Show c.-71+57381_-71+57391dupTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99432495	C C	CTTTTCTT others(4): Show CTTTTCTTTTCT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0018 a0005c0005t0018	a0005c0005t0018g0028 a0005c0005t0018g0028	1	66	0.0152	11	c.-71 others(32): Show c.-71+107014_-71+107015insTCTTTTCTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99508686	C C	CTTTCTTT others(4): Show CTTTCTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	66	0.0152	11	c.-70 others(30): Show c.-70-47456_-70-47455insCTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99637010	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0002 a0003c0003t0002g0002	1	66	0.0152	11	c.55+ others(28): Show c.55+80762_55+80772dupAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99727312	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG03130.hp1 HG01243.hp2 HG03130.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0005 a0005c0005t0001 a0001c0001t0005 a0005c0005t0001	a0001c0001t0005g0014 a0005c0005t0001g0035 a0001c0001t0005g0014 a0005c0005t0001g0035	2	66	0.0303	11	c.56- others(28): Show c.56-92220_56-92210dupAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99819306	T T	TCCCCTCT others(4): Show TCCCCTCTCCTC	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0003 a0003	a0003c0011 a0003c0011	a0003c0011t0019 a0003c0011t0019	a0003c0011t0019g0059 a0003c0011t0019g0059	1	66	0.0152	11	c.56- others(24): Show c.56-234_56-224dupCTCTCCTCCCC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99819321	T T	TCTCCTCC others(4): Show TCTCCTCCCCTC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0039 a0002c0002t0004g0039	1	66	0.0152	11	c.56- others(24): Show c.56-222_56-221insTCCTCCCCTCC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99819331	T T	TCCCCTCC others(4): Show TCCCCTCCCCTC	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0010 a0001c0001t0004g0010	1	66	0.0152	11	c.56- others(24): Show c.56-206_56-205insCCTCCCCCTCC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100072990	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02258.hp2 HG02895.hp2 HG00738.hp2 HG02258.hp2 HG02895.hp2	a0004 a0005 a0004 a0005	a0004c0004 a0005c0005 a0004c0004 a0005c0005	a0004c0004t0002 a0004c0004t0013 a0005c0005t0003 a0004c0004t0002 a0004c0004t0013 a0005c0005t0003	a0004c0004t0002g0041 a0004c0004t0013g0050 a0005c0005t0003g0045 a0004c0004t0002g0041 a0004c0004t0013g0050 a0005c0005t0003g0045	3	66	0.0455	11	c.143 others(30): Show c.1430-1143_1430-1133dupAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	12/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100161872	C C	CACACACA others(4): Show CACACACACACA	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0022 a0002c0002t0022	a0002c0002t0022g0013 a0002c0002t0022g0013	1	66	0.0152	11	c.158 others(32): Show c.1581-29253_1581-29252insCACACACACAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100161873	A A	ACACACAC others(4): Show ACACACACACAC	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0032 a0001c0001t0006g0032	1	66	0.0152	11	c.158 others(32): Show c.1581-29253_1581-29252insCACACACACAC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		chr11	TogoVar
CNTN5_chr11_99015949_100363885	100205691	T T	TACAAATA others(4): Show TACAAATATAAA	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp2 HG00735.hp1 others(55): Show HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp2 HG01496.hp2 HG01934.hp1 HG01934.hp2 HG02004.hp1 HG02004.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02602.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03471.hp1 HG03471.hp2 HG06807.hp1 NA18522.hp1 NA18939.hp2 NA18957.hp1 NA18957.hp2 NA19000.hp1 NA19000.hp2 NA19043.hp1 NA19043.hp2 NA19070.hp1 NA19070.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(9): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012	a0001c0001 a0002c0002 a0003c0003 others(10): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0008c0008 a0009c0012 a0010c0010 a0011c0009 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(36): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 a0002c0002t0005 a0002c0002t0008 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0004c0004t0020 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0001 a0006c0006t0009 a0006c0006t0011 a0006c0006t0013 a0006c0006t0014 a0007c0007t0023 a0008c0008t0007 a0009c0012t0008 a0010c0010t0011 a0011c0009t0005 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0052 others(55): Show a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0006g0032 a0001c0001t0006g0040 a0001c0001t0009g0043 a0001c0001t0009g0063 a0001c0001t0010g0023 a0001c0001t0010g0047 a0001c0001t0011g0062 a0001c0001t0012g0018 a0001c0001t0012g0030 a0001c0001t0014g0016 a0001c0001t0015g0064 a0001c0001t0016g0049 a0002c0002t0001g0003 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0005g0015 a0002c0002t0008g0019 a0002c0002t0022g0013 a0003c0003t0002g0002 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0061 a0003c0003t0007g0034 a0003c0011t0019g0059 a0004c0004t0002g0001 a0004c0004t0002g0041 a0004c0004t0002g0051 a0004c0004t0013g0050 a0004c0004t0020g0024 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0001g0005 a0006c0006t0009g0042 a0006c0006t0011g0033 a0006c0006t0013g0025 a0006c0006t0014g0058 a0007c0007t0023g0046 a0008c0008t0007g0038 a0009c0012t0008g0026 a0010c0010t0011g0009 a0011c0009t0005g0056 a0012c0013t0008g0031	58	66	0.8788	11	c.188 others(32): Show c.1884+12031_1884+12032insAATATAAAACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1154444	C C	CTTTTCTT others(4): Show CTTTTCTTTTCT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0002 a0002	a0002c0014 a0002c0014	a0002c0014t0001 a0002c0014t0001	a0002c0014t0001g0232 a0002c0014t0001g0232	1	232	0.0043	11	c.55+ others(26): Show c.55+6384_55+6385insTCTTTTCTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1154444	C C	CTTTTCTT others(4): Show CTTTTCTTTTTT	intron_variant intron_variant	MODIFIER	HG02148.hp1 NA18948.hp1 NA18954.hp2 others(1): Show HG02148.hp1 NA18948.hp1 NA18954.hp2 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0001t0001 a0001c0002t0001 a0001c0003t0001	a0001c0001t0001g0029 a0001c0002t0001g0062 a0001c0002t0001g0063 others(1): Show a0001c0001t0001g0029 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0003t0001g0112	4	232	0.0172	11	c.55+ others(26): Show c.55+6384_55+6385insTCTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1154452	T T	TTTTTTTT others(4): Show TTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03130.hp2 HG02622.hp2 HG03130.hp2	a0001 a0001	a0001c0006 a0001c0025 a0001c0006 a0001c0025	a0001c0006t0002 a0001c0025t0001 a0001c0006t0002 a0001c0025t0001	a0001c0006t0002g0178 a0001c0025t0001g0192 a0001c0006t0002g0178 a0001c0025t0001g0192	2	232	0.0086	11	c.55+ others(26): Show c.55+6397_55+6398insTTGTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1210425	G G	GGAAAAAG others(4): Show GGAAAAAGGAAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00423.hp1 others(104): Show HG00140.hp1 HG00140.hp2 HG00423.hp1 HG00639.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01123.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01255.hp2 HG01256.hp1 HG01261.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG02040.hp1 HG02055.hp1 HG02074.hp2 HG02145.hp2 HG02148.hp1 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02738.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp1 HG03471.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03710.hp2 HG03834.hp2 HG03927.hp1 HG04115.hp2 HG04204.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18949.hp2 NA18950.hp1 NA18953.hp1 NA18961.hp2 NA18971.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19009.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19065.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(15): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0012 a0001c0013 a0001c0020 a0001c0025 a0002c0011 a0002c0014 a0002c0017 a0003c0015	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0003t0001 a0001c0004t0001 a0001c0004t0005 a0001c0005t0001 a0001c0005t0002 a0001c0005t0004 a0001c0006t0001 a0001c0006t0002 a0001c0006t0004 a0001c0007t0001 a0001c0008t0001 a0001c0009t0003 a0001c0010t0001 a0001c0012t0001 a0001c0013t0001 a0001c0020t0001 a0001c0025t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0003c0015t0001	a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 others(104): Show a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0067 a0001c0001t0001g0086 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0107 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0190 a0001c0001t0001g0198 a0001c0001t0002g0124 a0001c0002t0001g0045 a0001c0002t0001g0053 a0001c0002t0001g0068 a0001c0002t0001g0094 a0001c0002t0001g0098 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0174 a0001c0002t0001g0176 a0001c0002t0001g0209 a0001c0002t0001g0227 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0003g0079 a0001c0002t0005g0050 a0001c0003t0001g0011 a0001c0003t0001g0030 a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0092 a0001c0003t0001g0118 a0001c0003t0001g0172 a0001c0003t0001g0177 a0001c0003t0001g0219 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0034 a0001c0004t0001g0055 a0001c0004t0001g0058 a0001c0004t0001g0060 a0001c0004t0001g0066 a0001c0004t0001g0103 a0001c0004t0001g0123 a0001c0004t0001g0132 a0001c0004t0001g0158 a0001c0004t0005g0110 a0001c0005t0001g0163 a0001c0005t0001g0164 a0001c0005t0001g0180 a0001c0005t0001g0182 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0196 a0001c0005t0001g0203 a0001c0005t0001g0215 a0001c0005t0001g0230 a0001c0005t0002g0115 a0001c0005t0004g0194 a0001c0006t0001g0036 a0001c0006t0001g0111 a0001c0006t0001g0162 a0001c0006t0001g0183 a0001c0006t0001g0213 a0001c0006t0001g0223 a0001c0006t0001g0229 a0001c0006t0002g0178 a0001c0006t0004g0119 a0001c0007t0001g0001 a0001c0007t0001g0012 a0001c0007t0001g0017 a0001c0007t0001g0052 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0008t0001g0120 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0214 a0001c0008t0001g0218 a0001c0009t0003g0051 a0001c0010t0001g0056 a0001c0012t0001g0085 a0001c0012t0001g0104 a0001c0013t0001g0199 a0001c0020t0001g0151 a0001c0025t0001g0192 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0220 a0002c0017t0001g0179 a0003c0015t0001g0007 a0003c0015t0001g0008	107	232	0.4612	11	c.56- others(28): Show c.56-10262_56-10261insGAAAAAGGAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1233734	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02922.hp2 HG02976.hp2 HG02572.hp2 HG02922.hp2 HG02976.hp2	a0001 a0001	a0001c0005 a0001c0006 a0001c0008 a0001c0005 a0001c0006 a0001c0008	a0001c0005t0001 a0001c0006t0001 a0001c0008t0001 a0001c0005t0001 a0001c0006t0001 a0001c0008t0001	a0001c0005t0001g0196 a0001c0006t0001g0195 a0001c0008t0001g0143 a0001c0005t0001g0196 a0001c0006t0001g0195 a0001c0008t0001g0143	3	232	0.0129	11	c.358 others(28): Show c.358+5755_358+5765dupAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245217	T T	TATATATA others(4): Show TATATATATAAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0019 a0001c0005t0002g0019	1	232	0.0043	11	c.358 others(30): Show c.358+17233_358+17234insACATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1265044	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	232	0.0043	11	c.359 others(30): Show c.359-13360_359-13350dupTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02280.hp2 HG02622.hp2 others(1): Show HG02165.hp1 HG02280.hp2 HG02622.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0006 a0001c0001 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0005t0001 a0001c0006t0001 others(1): Show a0001c0001t0001 a0001c0005t0001 a0001c0006t0001 a0001c0006t0002	a0001c0001t0001g0054 a0001c0005t0001g0164 a0001c0006t0001g0036 others(1): Show a0001c0001t0001g0054 a0001c0005t0001g0164 a0001c0006t0001g0036 a0001c0006t0002g0178	4	232	0.0172	11	c.454 others(28): Show c.454+1964_454+1974dupTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1332519	G G	GAAGGGGC others(4): Show GAAGGGGCGAGC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00423.hp1 others(107): Show HG00140.hp1 HG00140.hp2 HG00423.hp1 HG00423.hp2 HG00639.hp2 HG00735.hp1 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp2 HG01261.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01515.hp1 HG01884.hp1 HG01952.hp1 HG01978.hp1 HG01993.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02056.hp2 HG02074.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp2 HG02148.hp2 HG02155.hp2 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02451.hp1 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02896.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03492.hp2 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03710.hp1 HG03834.hp1 HG03927.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18953.hp2 NA18954.hp2 NA18961.hp1 NA18961.hp2 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18980.hp1 NA19000.hp1 NA19002.hp2 NA19003.hp1 NA19009.hp1 NA19009.hp2 NA19030.hp2 NA19043.hp1 NA19084.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0010 a0001c0013 a0001c0019 a0001c0021 a0001c0023 a0001c0024 a0001c0025 a0003c0015 a0006c0027	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(21): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0007 a0001c0002t0008 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0007t0001 a0001c0007t0006 a0001c0008t0001 a0001c0010t0001 a0001c0013t0001 a0001c0019t0001 a0001c0021t0001 a0001c0023t0001 a0001c0024t0001 a0001c0025t0001 a0003c0015t0001 a0006c0027t0001	a0001c0001t0001g0024 a0001c0001t0001g0046 a0001c0001t0001g0057 others(107): Show a0001c0001t0001g0024 a0001c0001t0001g0046 a0001c0001t0001g0057 a0001c0001t0001g0071 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0126 a0001c0001t0001g0149 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0173 a0001c0001t0001g0190 a0001c0002t0001g0045 a0001c0002t0001g0053 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0138 a0001c0002t0001g0139 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0160 a0001c0002t0001g0174 a0001c0002t0001g0176 a0001c0002t0001g0209 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0005g0050 a0001c0002t0007g0059 a0001c0002t0008g0221 a0001c0002t0009g0205 a0001c0003t0001g0011 a0001c0003t0001g0025 a0001c0003t0001g0026 a0001c0003t0001g0040 a0001c0003t0001g0042 a0001c0003t0001g0064 a0001c0003t0001g0074 a0001c0003t0001g0092 a0001c0003t0001g0112 a0001c0003t0001g0142 a0001c0003t0001g0154 a0001c0003t0001g0161 a0001c0003t0001g0172 a0001c0003t0001g0175 a0001c0003t0001g0177 a0001c0003t0001g0219 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0072 a0001c0004t0001g0080 a0001c0004t0001g0089 a0001c0004t0001g0103 a0001c0004t0001g0123 a0001c0004t0001g0128 a0001c0004t0001g0132 a0001c0005t0001g0113 a0001c0005t0001g0159 a0001c0005t0001g0180 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0203 a0001c0005t0001g0207 a0001c0005t0004g0194 a0001c0006t0001g0037 a0001c0006t0001g0111 a0001c0006t0001g0184 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0006t0001g0210 a0001c0006t0001g0216 a0001c0006t0001g0229 a0001c0007t0001g0001 a0001c0007t0001g0017 a0001c0007t0001g0048 a0001c0007t0001g0052 a0001c0007t0001g0102 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0135 a0001c0007t0001g0155 a0001c0007t0006g0170 a0001c0008t0001g0010 a0001c0008t0001g0075 a0001c0008t0001g0087 a0001c0008t0001g0143 a0001c0008t0001g0167 a0001c0008t0001g0169 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0218 a0001c0010t0001g0056 a0001c0013t0001g0199 a0001c0019t0001g0202 a0001c0021t0001g0231 a0001c0023t0001g0186 a0001c0024t0001g0070 a0001c0025t0001g0192 a0003c0015t0001g0007 a0003c0015t0001g0008 a0006c0027t0001g0191	110	232	0.4741	11	c.136 others(30): Show c.1364+2588_1364+2589insGGCGAGCAAGG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1348157	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02486.hp2 HG02109.hp1 HG02486.hp2	a0002 a0006 a0002 a0006	a0002c0011 a0006c0027 a0002c0011 a0006c0027	a0002c0011t0001 a0006c0027t0001 a0002c0011t0001 a0006c0027t0001	a0002c0011t0001g0006 a0006c0027t0001g0191 a0002c0011t0001g0006 a0006c0027t0001g0191	2	232	0.0086	11	c.136 others(30): Show c.1365-4158_1365-4148dupAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP1_chr17_42677531_42704993	42686469	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03579.hp2 HG02258.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0182 a0001c0001t0002g0183	2	364	0.0055	11	c.900 others(26): Show c.900+342_900+352dupTTTTTTTTTTT	CNTNAP1	ENSG00000108797.12	transcript	ENST00000264638.9	protein_coding	6/23	INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTNAP2_chr7_146111801_148425998	146192476	A A	AAGGCAAA others(4): Show AAGGCAAAGGAG	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA19030.hp2 HG02630.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0012 a0002c0016 a0001c0012 a0002c0016	a0001c0012t0004 a0002c0016t0004 a0001c0012t0004 a0002c0016t0004	a0001c0012t0004g0026 a0002c0016t0004g0024 a0001c0012t0004g0026 a0002c0016t0004g0024	2	40	0.0500	11	c.97+ others(28): Show c.97+75505_97+75515dupGGCAAAGGAGA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146322634	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02451.hp1 HG02486.hp1 others(3): Show HG00735.hp2 HG02451.hp1 HG02486.hp1 HG03098.hp1 HG03225.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0013 others(2): Show a0001c0001 a0001c0002 a0001c0013 a0001c0018 a0001c0019	a0001c0001t0001 a0001c0001t0007 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0007 a0001c0002t0001 a0001c0013t0003 a0001c0018t0002 a0001c0019t0006	a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0002t0001g0007 others(3): Show a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0002t0001g0007 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0019t0006g0015	6	40	0.1500	11	c.97+ others(30): Show c.97+205669_97+205679dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146352750	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03139.hp1 NA21309.hp1 HG01891.hp2 HG03139.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0008 a0001c0010 a0001c0001 a0001c0008 a0001c0010	a0001c0001t0006 a0001c0008t0001 a0001c0010t0002 a0001c0001t0006 a0001c0008t0001 a0001c0010t0002	a0001c0001t0006g0009 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0001t0006g0009 a0001c0008t0001g0025 a0001c0010t0002g0014	3	40	0.0750	11	c.97+ others(30): Show c.97+235788_97+235798dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146398184	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03225.hp1 HG03098.hp2 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0001 a0001c0009t0019 a0001c0002t0001 a0001c0009t0019	a0001c0002t0001g0021 a0001c0009t0019g0027 a0001c0002t0001g0021 a0001c0009t0019g0027	2	40	0.0500	11	c.97+ others(30): Show c.97+281223_97+281233dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146404124	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02896.hp1 HG02896.hp2 others(3): Show HG02717.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02976.hp2 HG03098.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0005c0020	a0001c0001t0001 a0001c0003t0020 a0001c0004t0003 others(2): Show a0001c0001t0001 a0001c0003t0020 a0001c0004t0003 a0001c0005t0008 a0005c0020t0005	a0001c0001t0001g0003 a0001c0003t0020g0017 a0001c0004t0003g0035 others(3): Show a0001c0001t0001g0003 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0005t0008g0005 a0005c0020t0005g0016	6	40	0.1500	11	c.97+ others(30): Show c.97+287159_97+287169dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146404141	A A	AAAAAAAA others(4): Show AAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0004 a0004	a0004c0014 a0004c0014	a0004c0014t0021 a0004c0014t0021	a0004c0014t0021g0022 a0004c0014t0021g0022	1	40	0.0250	11	c.97+ others(30): Show c.97+287169_97+287170insAAAAAAAAACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146426185	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02976.hp1 HG03139.hp1 HG02922.hp2 HG02976.hp1 HG03139.hp1	a0001 a0001	a0001c0004 a0001c0008 a0001c0015 a0001c0004 a0001c0008 a0001c0015	a0001c0004t0005 a0001c0008t0001 a0001c0015t0001 a0001c0004t0005 a0001c0008t0001 a0001c0015t0001	a0001c0004t0005g0004 a0001c0008t0001g0025 a0001c0015t0001g0011 a0001c0004t0005g0004 a0001c0008t0001g0025 a0001c0015t0001g0011	3	40	0.0750	11	c.97+ others(30): Show c.97+309227_97+309237dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146464187	G G	GTTTTTTT others(4): Show GTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	11	c.98- others(30): Show c.98-310075_98-310065dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535217	T T	TAATATAT others(4): Show TAATATATATAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02451.hp2 HG02886.hp2 others(4): Show HG00735.hp1 HG02451.hp2 HG02886.hp2 HG02922.hp2 HG02976.hp2 HG03225.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0018	a0001c0001t0002 a0001c0002t0002 a0001c0003t0020 others(4): Show a0001c0001t0002 a0001c0002t0002 a0001c0003t0020 a0001c0004t0005 a0001c0005t0022 a0001c0006t0014 a0001c0018t0002	a0001c0001t0002g0006 a0001c0002t0002g0040 a0001c0003t0020g0017 others(4): Show a0001c0001t0002g0006 a0001c0002t0002g0040 a0001c0003t0020g0017 a0001c0004t0005g0004 a0001c0005t0022g0032 a0001c0006t0014g0033 a0001c0018t0002g0012	7	40	0.1750	11	c.98- others(30): Show c.98-239054_98-239053insAATATATATAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535217	T T	TAATATAT others(4): Show TAATATATATCA	intron_variant intron_variant	MODIFIER	HG02886.hp1 NA21309.hp2 HG02886.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0018 a0001c0003t0013 a0001c0001t0018 a0001c0003t0013	a0001c0001t0018g0001 a0001c0003t0013g0010 a0001c0001t0018g0001 a0001c0003t0013g0010	2	40	0.0500	11	c.98- others(30): Show c.98-239054_98-239053insAATATATATCA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535241	T T	TATATAAT others(4): Show TATATAATATAG	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0016 a0001c0011t0016	a0001c0011t0016g0019 a0001c0011t0016g0019	1	40	0.0250	11	c.98- others(30): Show c.98-239028_98-239027insATAATATAGAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535278	T T	TATAATAT others(4): Show TATAATATAATA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0002 a0001c0010t0002	a0001c0010t0002g0014 a0001c0010t0002g0014	1	40	0.0250	11	c.98- others(30): Show c.98-238993_98-238992insATAATATAATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535351	T T	TATAATAT others(4): Show TATAATATAATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG01891.hp1 HG02630.hp1	a0001 a0004 a0001 a0004	a0001c0012 a0004c0014 a0001c0012 a0004c0014	a0001c0012t0004 a0004c0014t0021 a0001c0012t0004 a0004c0014t0021	a0001c0012t0004g0026 a0004c0014t0021g0022 a0001c0012t0004g0026 a0004c0014t0021g0022	2	40	0.0500	11	c.98- others(30): Show c.98-238920_98-238919insATAATATAATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146535397	A A	AATTATTA others(4): Show AATTATTATTAT	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0020 a0001c0003t0020	a0001c0003t0020g0017 a0001c0003t0020g0017	1	40	0.0250	11	c.98- others(30): Show c.98-238874_98-238873insATTATTATTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146665783	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0020 a0001c0003t0020	a0001c0003t0020g0017 a0001c0003t0020g0017	1	40	0.0250	11	c.98- others(30): Show c.98-108483_98-108473dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146721264	C C	CTATATAT others(4): Show CTATATATTCTA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02976.hp1 HG03139.hp1 others(1): Show HG02451.hp1 HG02976.hp1 HG03139.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0008 a0001c0010 others(1): Show a0001c0002 a0001c0008 a0001c0010 a0001c0015	a0001c0002t0001 a0001c0008t0001 a0001c0010t0002 others(1): Show a0001c0002t0001 a0001c0008t0001 a0001c0010t0002 a0001c0015t0001	a0001c0002t0001g0007 a0001c0008t0001g0025 a0001c0010t0002g0014 others(1): Show a0001c0002t0001g0007 a0001c0008t0001g0025 a0001c0010t0002g0014 a0001c0015t0001g0011	4	40	0.1000	11	c.98- others(28): Show c.98-52979_98-52969dupATTCTATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146985308	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0023 a0001c0003t0011g0023	1	40	0.0250	11	c.403 others(30): Show c.403-58580_403-58570dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147102282	G G	GAAAAAAA others(4): Show GAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0007	1	40	0.0250	11	c.551 others(28): Show c.551-5860_551-5850dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147242987	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 NA21309.hp2 HG02451.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0018 a0001c0002t0001 a0001c0001t0018 a0001c0002t0001	a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0001t0018g0001 a0001c0002t0001g0007	2	40	0.0500	11	c.134 others(32): Show c.1349-57135_1349-57125dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147469506	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03540.hp2 NA19030.hp1 HG03098.hp2 HG03540.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0004 a0001c0001t0001 a0001c0002t0001 a0001c0003t0004	a0001c0001t0001g0038 a0001c0002t0001g0021 a0001c0003t0004g0029 a0001c0001t0001g0038 a0001c0002t0001g0021 a0001c0003t0004g0029	3	40	0.0750	11	c.167 others(32): Show c.1671-16413_1671-16403dupTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147614778	C C	CCTGATTT others(4): Show CCTGATTTATTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01891.hp1 others(30): Show HG00735.hp1 HG00735.hp2 HG01891.hp1 HG01891.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 HG03239.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp1 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(15): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0008 a0001c0011 a0001c0012 a0001c0013 a0001c0015 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0003c0007 a0004c0014 a0005c0020	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(25): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0004t0003 a0001c0004t0005 a0001c0005t0008 a0001c0005t0022 a0001c0006t0009 a0001c0006t0014 a0001c0008t0001 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021 a0005c0020t0005	a0001c0001t0001g0038 a0001c0001t0006g0009 a0001c0001t0007g0018 others(30): Show a0001c0001t0001g0038 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0012g0034 a0001c0001t0018g0001 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0002g0040 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0005t0008g0005 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0006t0014g0033 a0001c0008t0001g0025 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022 a0005c0020t0005g0016	33	40	0.8250	11	c.189 others(32): Show c.1898-24328_1898-24327insCTGATTTATTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	12/23		chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147886475	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03139.hp2 HG02451.hp1 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0011 a0001c0002 a0001c0011	a0001c0002t0001 a0001c0011t0016 a0001c0002t0001 a0001c0011t0016	a0001c0002t0001g0007 a0001c0011t0016g0019 a0001c0002t0001g0007 a0001c0011t0016g0019	2	40	0.0500	11	c.209 others(32): Show c.2099-17072_2099-17062dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147940303	T T	TAAAAAAA others(4): Show TAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0022 a0001c0005t0022	a0001c0005t0022g0032 a0001c0005t0022g0032	1	40	0.0250	11	c.225 others(32): Show c.2255+36593_2255+36603dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147980768	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02886.hp1 HG02922.hp1 others(4): Show HG02717.hp1 HG02886.hp1 HG02922.hp1 HG02976.hp1 HG03139.hp1 HG03540.hp2 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0008 others(3): Show a0001c0001 a0001c0003 a0001c0008 a0001c0013 a0001c0015 a0002c0017	a0001c0001t0012 a0001c0003t0004 a0001c0003t0013 others(4): Show a0001c0001t0012 a0001c0003t0004 a0001c0003t0013 a0001c0008t0001 a0001c0013t0003 a0001c0015t0001 a0002c0017t0015	a0001c0001t0012g0034 a0001c0003t0004g0029 a0001c0003t0013g0010 others(4): Show a0001c0001t0012g0034 a0001c0003t0004g0029 a0001c0003t0013g0010 a0001c0008t0001g0025 a0001c0013t0003g0039 a0001c0015t0001g0011 a0002c0017t0015g0037	7	40	0.1750	11	c.238 others(30): Show c.2383+2782_2383+2792dupAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	15/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147984699	C C	CTACAGGG others(4): Show CTACAGGGAGTA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02717.hp1 HG02886.hp1 others(6): Show HG02486.hp2 HG02717.hp1 HG02886.hp1 HG02922.hp1 HG02976.hp1 HG03139.hp1 HG03540.hp2 NA18522.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0008 others(3): Show a0001c0001 a0001c0003 a0001c0008 a0001c0013 a0001c0015 a0002c0017	a0001c0001t0012 a0001c0001t0018 a0001c0003t0004 others(6): Show a0001c0001t0012 a0001c0001t0018 a0001c0003t0004 a0001c0003t0011 a0001c0003t0013 a0001c0008t0001 a0001c0013t0003 a0001c0015t0001 a0002c0017t0015	a0001c0001t0012g0034 a0001c0001t0018g0001 a0001c0003t0004g0029 others(6): Show a0001c0001t0012g0034 a0001c0001t0018g0001 a0001c0003t0004g0029 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0008t0001g0025 a0001c0013t0003g0039 a0001c0015t0001g0011 a0002c0017t0015g0037	9	40	0.2250	11	c.238 others(30): Show c.2383+6719_2383+6720insTATACAGGGAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	15/23	INFO_REALIGN_3_PRIME	chr7	TogoVar

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