Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CCK_chr3_42252826_42271185	42266526	A A	ATTCATTC others(5): Show ATTCATTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 HG06807.hp1 NA18947.hp1 others(9): Show HG03486.hp2 HG06807.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18966.hp2 NA18971.hp2 NA18973.hp1 NA19012.hp2 NA19043.hp2 NA19065.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0009 a0001c0001t0002g0022 a0001c0001t0003g0010 a0001c0001t0002g0009 a0001c0001t0002g0022 a0001c0001t0003g0010	12	430	0.0279	12	c.-12 others(23): Show c.-1226_-1225insGGAAGGAATGAA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		342		chr3	TogoVar
CCK_chr3_42252826_42271185	42266526	A A	ATTCCTTC others(5): Show ATTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00597.hp2 HG00642.hp1 others(56): Show HG00280.hp1 HG00597.hp2 HG00642.hp1 HG00738.hp1 HG01069.hp1 HG01071.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp2 HG01255.hp2 HG01256.hp1 HG01496.hp1 HG01884.hp1 HG01891.hp2 HG02015.hp1 HG02080.hp1 HG02083.hp2 HG02155.hp1 HG02257.hp2 HG02258.hp1 HG02523.hp1 HG02559.hp1 HG02572.hp2 HG02683.hp2 HG02723.hp1 HG02895.hp2 HG02897.hp2 HG02976.hp1 HG03017.hp2 HG03130.hp1 HG03195.hp1 HG03453.hp2 HG03471.hp1 HG03491.hp1 HG03579.hp1 HG03942.hp1 HG04184.hp2 NA18945.hp1 NA18956.hp1 NA18961.hp2 NA18980.hp2 NA18984.hp1 NA18990.hp2 NA18998.hp1 NA19002.hp2 NA19003.hp2 NA19004.hp2 NA19010.hp2 NA19030.hp1 NA19060.hp1 NA19064.hp1 NA19070.hp2 NA19076.hp2 NA19078.hp1 NA19088.hp2 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0013 others(25): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0031 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0092 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0002g0004 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0114 a0001c0001t0004g0017 a0001c0001t0004g0085 a0001c0001t0005g0011 a0001c0001t0006g0015 a0001c0001t0007g0019	59	430	0.1372	12	c.-12 others(23): Show c.-1226_-1225insGGAAGGAAGGAA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		342		chr3	TogoVar
CCK_chr3_42252826_42271185	42266678	C C	CTCTTCCT others(5): Show CTCTTCCTTCCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp1 HG02257.hp1 HG02622.hp1 others(1): Show HG02027.hp1 HG02257.hp1 HG02622.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0014 a0001c0001t0001 a0001c0001t0005 a0001c0001t0014	a0001c0001t0001g0003 a0001c0001t0001g0012 a0001c0001t0005g0011 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0012 a0001c0001t0005g0011 a0001c0001t0014g0096	4	430	0.0093	12	c.-13 others(23): Show c.-1378_-1377insAAGGAAGGAAGA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		494		chr3	TogoVar
CCK_chr3_42252826_42271185	42266717	T T	TTCCTTCC others(5): Show TTCCTTCCTTCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp2 NA19240.hp2 NA18522.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0002g0018 a0001c0001t0001g0002 a0001c0001t0002g0018	2	430	0.0047	12	c.-14 others(23): Show c.-1417_-1416insGGGAAGGAAGGA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		533		chr3	TogoVar
CCK_chr3_42252826_42271185	42266836	T T	TTTCCTTC others(5): Show TTTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0061 a0001c0001t0001g0061	1	430	0.0023	12	c.-15 others(23): Show c.-1536_-1535insGGAAGGAAGGAA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		652		chr3	TogoVar
CCL11_chr17_34280742_34293334	34288540	G G	GAGGTTTA others(5): Show GAGGTTTAGGTGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(383): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00621.hp2 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19009.hp1 NA19009.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19067.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19088.hp1 NA19088.hp2 NA19089.hp1 NA19089.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0002c0004 others(2): Show a0001c0001 a0002c0002 a0002c0004 a0002c0005 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(39): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0030 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0037 a0002c0002t0002 a0002c0002t0007 a0002c0002t0008 a0002c0002t0009 a0002c0002t0015 a0002c0002t0016 a0002c0002t0020 a0002c0002t0022 a0002c0002t0036 a0002c0004t0002 a0002c0004t0025 a0002c0005t0002 a0003c0003t0008	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0014 others(62): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0014 a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0003g0007 a0001c0001t0004g0001 a0001c0001t0005g0002 a0001c0001t0005g0003 a0001c0001t0005g0015 a0001c0001t0007g0002 a0001c0001t0007g0004 a0001c0001t0008g0001 a0001c0001t0008g0002 a0001c0001t0008g0006 a0001c0001t0008g0008 a0001c0001t0009g0001 a0001c0001t0009g0004 a0001c0001t0009g0005 a0001c0001t0010g0001 a0001c0001t0010g0011 a0001c0001t0011g0002 a0001c0001t0011g0003 a0001c0001t0012g0002 a0001c0001t0012g0003 a0001c0001t0012g0006 a0001c0001t0012g0007 a0001c0001t0013g0001 a0001c0001t0014g0002 a0001c0001t0014g0004 a0001c0001t0017g0004 a0001c0001t0018g0002 a0001c0001t0019g0002 a0001c0001t0021g0004 a0001c0001t0022g0002 a0001c0001t0023g0003 a0001c0001t0023g0013 a0001c0001t0026g0002 a0001c0001t0027g0002 a0001c0001t0028g0001 a0001c0001t0029g0004 a0001c0001t0030g0002 a0001c0001t0032g0001 a0001c0001t0033g0001 a0001c0001t0034g0002 a0001c0001t0035g0002 a0001c0001t0037g0001 a0002c0002t0002g0001 a0002c0002t0002g0009 a0002c0002t0007g0001 a0002c0002t0008g0001 a0002c0002t0008g0010 a0002c0002t0009g0001 a0002c0002t0015g0001 a0002c0002t0016g0001 a0002c0002t0020g0001 a0002c0002t0022g0001 a0002c0002t0036g0001 a0002c0004t0002g0001 a0002c0004t0025g0001 a0002c0005t0002g0001 a0003c0003t0008g0001	386	448	0.8616	12	c.85 others(21): Show c.850_*851insAGGTTTAGGTGC	CCL11	ENSG00000172156.4	transcript	ENST00000305869.4	protein_coding		207		chr17	TogoVar
CCL14_chr17_35978288_35991729	35983010	C C	CTCCCTCT others(5): Show CTCCCTCTCTCCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0013 a0003c0004t0013	a0003c0004t0013g0025 a0003c0004t0013g0025	1	445	0.0023	12	c.79 others(21): Show c.790_*791insTGGAGAGAGGGA	CCL14	ENSG00000276409.5	transcript	ENST00000618404.5	protein_coding		277		chr17	TogoVar
CCL15_chr17_35992582_36006553	35992687	T T	TAAAAAAA others(5): Show TAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0023 a0002c0002t0001g0023	1	441	0.0023	12	c.50 others(23): Show c.5079_*5080insTTTTTTTTTTTT	CCL15	ENSG00000275718.2	transcript	ENST00000617897.2	protein_coding		4894		chr17	TogoVar
CCL15_chr17_35992582_36006553	35994462	C C	CCACACAC others(5): Show CCACACACACACA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp2 HG02717.hp1 HG02818.hp2 others(1): Show HG02451.hp2 HG02717.hp1 HG02818.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0039 a0001c0001t0001g0065 a0001c0001t0001g0019 a0001c0001t0001g0039 a0001c0001t0001g0065	4	441	0.0091	12	c.33 others(23): Show c.3304_*3305insTGTGTGTGTGTG	CCL15	ENSG00000275718.2	transcript	ENST00000617897.2	protein_coding		3119		chr17	TogoVar
CCL15_chr17_35992582_36006553	35997162	C C	CTTATTAT others(5): Show CTTATTATTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp1 NA18977.hp2 NA20300.hp2 others(1): Show NA18968.hp1 NA18977.hp2 NA20300.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0002g0004 a0001c0001t0002g0008 a0002c0002t0001g0081 a0001c0001t0002g0004 a0001c0001t0002g0008 a0002c0002t0001g0081	4	441	0.0091	12	c.59 others(21): Show c.593_*604dupTAATAATAATAA	CCL15	ENSG00000275718.2	transcript	ENST00000617897.2	protein_coding		419		chr17	TogoVar
CCL16_chr17_35971499_35986497	35974396	C C	CTATATAT others(5): Show CTATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0010	1	457	0.0022	12	c.31 others(23): Show c.3169_*3170insTATATATATATA	CCL16	ENSG00000275152.5	transcript	ENST00000611905.2	protein_coding		2102		chr17	TogoVar
CCL16_chr17_35971499_35986497	35974417	T T	TATATATA others(5): Show TATATATATACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG03041.hp2 HG02257.hp1 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	2	457	0.0044	12	c.31 others(23): Show c.3148_*3149insGTGTATATATAT	CCL16	ENSG00000275152.5	transcript	ENST00000611905.2	protein_coding		2081		chr17	TogoVar
CCL16_chr17_35971499_35986497	35974456	C C	CTATATAT others(5): Show CTATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 NA18612.hp1 NA18970.hp2 others(4): Show HG02145.hp1 NA18612.hp1 NA18970.hp2 NA18982.hp2 NA19005.hp2 NA19063.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0001g0040 a0001c0001t0003g0048 a0001c0001t0001g0002 a0001c0001t0001g0040 a0001c0001t0003g0048	7	457	0.0153	12	c.31 others(23): Show c.3109_*3110insTATATATATATA	CCL16	ENSG00000275152.5	transcript	ENST00000611905.2	protein_coding		2042		chr17	TogoVar
CCL16_chr17_35971499_35986497	35983010	C C	CTCCCTCT others(5): Show CTCCCTCTCTCCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0025 a0001c0001t0010g0025	1	457	0.0022	12	c.-15 others(23): Show c.-1591_-1590insTGGAGAGAGGGA	CCL16	ENSG00000275152.5	transcript	ENST00000611905.2	protein_coding		1514		chr17	TogoVar
CCL17_chr16_57399767_57421063	57407748	T T	TCATCCAT others(5): Show TCATCCATCCATC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02896.hp2 NA18522.hp1 HG02886.hp1 HG02896.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0066 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0066	3	388	0.0077	12	c.-60 others(29): Show c.-60+2923_-60+2934dupTCCATCCATCCA	CCL17	ENSG00000102970.11	transcript	ENST00000219244.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr16	TogoVar
CCL17_chr16_57399767_57421063	57416829	T T	TTGTGTCT others(5): Show TTGTGTCTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG02135.hp1 NA19080.hp1 HG00673.hp2 HG02135.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0001g0032	3	388	0.0077	12	c.96 others(21): Show c.968_*969insTGTGTCTGTGTG	CCL17	ENSG00000102970.11	transcript	ENST00000219244.9	protein_coding		767		chr16	TogoVar
CCL17_chr16_57399767_57421063	57416829	T T	TTGTGTGT others(5): Show TTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02080.hp1 HG02922.hp2 NA18944.hp1 others(9): Show HG02080.hp1 HG02922.hp2 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA19009.hp2 NA19011.hp2 NA19066.hp1 NA19074.hp2 NA19089.hp2 NA19091.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0006 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0034 a0001c0001t0001g0052 a0001c0001t0001g0075 a0001c0001t0001g0077	12	388	0.0309	12	c.96 others(21): Show c.968_*969insTGTGTGTGTGTG	CCL17	ENSG00000102970.11	transcript	ENST00000219244.9	protein_coding		767		chr16	TogoVar
CCL19_chr9_34684570_34696276	34690424	C C	CTGTGTGT others(5): Show CTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01070.hp2 HG01123.hp1 others(3): Show HG00140.hp2 HG01070.hp2 HG01123.hp1 HG01943.hp2 HG03942.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	6	400	0.0150	12	c.50- others(23): Show c.50-94_50-83dupCACACACACACA	CCL19	ENSG00000172724.12	transcript	ENST00000311925.7	protein_coding	1/3			chr9	TogoVar
CCL24_chr7_75805825_75818806	75809244	T T	TTTATTAT others(5): Show TTTATTATTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp1 HG02647.hp1 HG02976.hp2 others(1): Show HG02109.hp1 HG02647.hp1 HG02976.hp2 HG03195.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0019 a0002c0002t0013g0019	4	406	0.0099	12	c.25 others(23): Show c.2551_*2552insTAATAATAATAA	CCL24	ENSG00000106178.7	transcript	ENST00000222902.7	protein_coding		1580		chr7	TogoVar
CCL24_chr7_75805825_75818806	75809244	T T	TTTTTTAT others(5): Show TTTTTTATTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01517.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0006 a0001c0001t0008g0006	1	406	0.0025	12	c.25 others(23): Show c.2551_*2552insTAATAATAAAAA	CCL24	ENSG00000106178.7	transcript	ENST00000222902.7	protein_coding		1580		chr7	TogoVar
CCL26_chr7_75764538_75777211	75767337	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 NA18939.hp2 HG00438.hp1 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	2	424	0.0047	12	c.23 others(23): Show c.2355_*2356insTTTTTTTTTTTT	CCL26	ENSG00000006606.9	transcript	ENST00000005180.9	protein_coding		2200		chr7	TogoVar
CCL26_chr7_75764538_75777211	75768251	T T	TTTTATTT others(5): Show TTTTATTTATTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG00621.hp2 HG01081.hp1 others(40): Show HG00423.hp2 HG00621.hp2 HG01081.hp1 HG01433.hp1 HG02040.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02572.hp1 HG02622.hp1 HG02647.hp1 HG02683.hp2 HG02717.hp2 HG02723.hp1 HG02809.hp2 HG02818.hp2 HG02922.hp2 HG02970.hp2 HG03209.hp1 HG03209.hp2 HG03491.hp1 HG03492.hp2 HG06807.hp1 NA18612.hp2 NA18946.hp2 NA18949.hp1 NA18953.hp2 NA18956.hp1 NA18964.hp1 NA18969.hp2 NA18981.hp2 NA18985.hp1 NA18994.hp2 NA18998.hp1 NA18999.hp1 NA19003.hp2 NA19011.hp1 NA19067.hp1 NA19085.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0014 others(2): Show a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0014 a0001c0001t0002g0021 a0001c0001t0002g0034	43	424	0.1014	12	c.14 others(23): Show c.1441_*1442insTAAATAAATAAA	CCL26	ENSG00000006606.9	transcript	ENST00000005180.9	protein_coding		1286		chr7	TogoVar
CCL26_chr7_75764538_75777211	75768802	T T	TTTATTAT others(5): Show TTTATTATTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02486.hp2 HG02976.hp2 others(2): Show HG02145.hp1 HG02486.hp2 HG02976.hp2 HG03540.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0035 a0001c0001t0001g0010 a0001c0001t0001g0035	5	424	0.0118	12	c.89 others(21): Show c.890_*891insTAATAATAATAA	CCL26	ENSG00000006606.9	transcript	ENST00000005180.9	protein_coding		735		chr7	TogoVar
CCL27_chr9_34656890_34667657	34661552	G G	GGATGGAT others(5): Show GGATGGATGGACA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00738.hp1 others(12): Show HG00099.hp2 HG00140.hp1 HG00738.hp1 HG01070.hp2 HG01123.hp2 HG01516.hp1 HG01517.hp1 HG01943.hp2 HG02735.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03942.hp1 NA19064.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	15	382	0.0393	12	c.39 others(21): Show c.391_*392insTGTCCATCCATC	CCL27	ENSG00000213927.4	transcript	ENST00000259631.5	protein_coding		337		chr9	TogoVar
CCL28_chr5_43374193_43417391	43377717	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01258.hp1 HG01346.hp1 HG01346.hp2 others(1): Show HG01258.hp1 HG01346.hp1 HG01346.hp2 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0001g0081 a0001c0001t0001g0133 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0081 a0001c0001t0001g0133 a0001c0001t0003g0011	4	326	0.0123	12	c.41 others(23): Show c.4131_*4142dupAAAAAAAAAAAA	CCL28	ENSG00000151882.11	transcript	ENST00000361115.4	protein_coding		1475		chr5	TogoVar
CCL28_chr5_43374193_43417391	43411023	A A	AGGCAGTT others(5): Show AGGCAGTTAATAC	intron_variant intron_variant	MODIFIER	NA19001.hp2 NA19001.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0056 a0001c0001t0002g0056	1	326	0.0031	12	c.64+ others(27): Show c.64+1218_64+1229dupGTATTAACTGCC	CCL28	ENSG00000151882.11	transcript	ENST00000361115.4	protein_coding	1/2			chr5	TogoVar
CCL3L3_chr17_36189869_36201758	36192941	T T	TGTGTGTG others(5): Show TGTGTGTGTGAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0004 a0001c0001t0003g0004	1	158	0.0063	12	c.23 others(23): Show c.2344_*2345insTCTCACACACAC	CCL3L3	ENSG00000276085.1	transcript	ENST00000619989.1	protein_coding		1927		chr17	TogoVar
CCL3L3_chr17_36189869_36201758	36192941	T T	TGTGTGTG others(5): Show TGTGTGTGTGTGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp2 HG01243.hp2 HG01361.hp1 others(7): Show HG00609.hp2 HG01243.hp2 HG01361.hp1 HG01981.hp2 HG02809.hp1 HG03704.hp1 NA18944.hp2 NA18962.hp1 NA19056.hp1 NA19072.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0003 a0001c0001t0004 a0001c0002t0002 others(1): Show a0001c0001t0003 a0001c0001t0004 a0001c0002t0002 a0002c0003t0005	a0001c0001t0003g0004 a0001c0001t0004g0008 a0001c0002t0002g0002 others(1): Show a0001c0001t0003g0004 a0001c0001t0004g0008 a0001c0002t0002g0002 a0002c0003t0005g0014	10	158	0.0633	12	c.23 others(23): Show c.2344_*2345insTCACACACACAC	CCL3L3	ENSG00000276085.1	transcript	ENST00000619989.1	protein_coding		1927		chr17	TogoVar
CCL3_chr17_36083256_36095143	36086304	T T	TGTGTGTG others(5): Show TGTGTGTGTGTGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0003 a0001c0002t0002g0003	1	381	0.0026	12	c.23 others(23): Show c.2367_*2368insGCACACACACAC	CCL3	ENSG00000277632.2	transcript	ENST00000613922.2	protein_coding		1951		chr17	TogoVar
CCL4L2_chr17_36206063_36217873	36208207	T T	TTATATAT others(5): Show TTATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG03669.hp2 NA18978.hp1 others(3): Show HG01243.hp2 HG03669.hp2 NA18978.hp1 NA19067.hp1 NA19080.hp2 NA20905.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0001c0004 a0006c0008 a0001c0001 a0001c0004 a0006c0008	a0001c0001t0001 a0001c0004t0001 a0006c0008t0004 a0001c0001t0001 a0001c0004t0001 a0006c0008t0004	a0001c0001t0001g0001 a0001c0001t0001g0016 a0001c0004t0001g0005 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0016 a0001c0004t0001g0005 a0006c0008t0004g0003	6	156	0.0385	12	c.-29 others(23): Show c.-2935_-2934insTATATATATATA	CCL4L2	ENSG00000276070.5	transcript	ENST00000617405.5	protein_coding		2855		chr17	TogoVar
CCL4_chr17_36098827_36110614	36101028	G G	GACATATA others(5): Show GACATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp1 NA18955.hp2 NA18971.hp1 others(8): Show HG02074.hp1 NA18955.hp2 NA18971.hp1 NA18974.hp1 NA18983.hp2 NA18992.hp1 NA18994.hp1 NA18999.hp1 NA19056.hp2 NA19072.hp2 NA19086.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	11	413	0.0266	12	c.-28 others(23): Show c.-2878_-2877insACATATATATAT	CCL4	ENSG00000275302.2	transcript	ENST00000615863.2	protein_coding		2798		chr17	TogoVar
CCL7_chr17_34265221_34277242	34274822	G G	GAGAAGGA others(5): Show GAGAAGGAGAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp2 HG03195.hp2 HG03139.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	428	0.0047	12	c.30 others(23): Show c.3020_*3021insAGAAGGAGAAGA	CCL7	ENSG00000108688.11	transcript	ENST00000378569.2	protein_coding		2581		chr17	TogoVar
CCL7_chr17_34265221_34277242	34274840	A A	AAGAAGGA others(5): Show AAGAAGGAGAAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 HG00673.hp2 HG00741.hp1 others(52): Show HG00408.hp2 HG00673.hp2 HG00741.hp1 HG01070.hp2 HG01071.hp2 HG01099.hp1 HG01109.hp1 HG01257.hp1 HG01261.hp1 HG01943.hp1 HG02004.hp1 HG02015.hp2 HG02027.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02145.hp1 HG02523.hp1 HG02572.hp1 HG02630.hp1 HG02738.hp1 HG03239.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp2 HG03669.hp1 HG03710.hp1 HG04228.hp2 NA18747.hp2 NA18939.hp2 NA18943.hp2 NA18946.hp2 NA18947.hp1 NA18951.hp1 NA18959.hp1 NA18969.hp1 NA18972.hp1 NA18977.hp1 NA18980.hp1 NA18992.hp2 NA18998.hp2 NA18999.hp1 NA19001.hp1 NA19043.hp1 NA19066.hp2 NA19070.hp1 NA19074.hp2 NA19079.hp1 NA19080.hp2 NA19084.hp1 NA19088.hp1 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0002c0003t0001g0001	55	428	0.1285	12	c.30 others(23): Show c.3038_*3039insAGAAGGAGAAGG	CCL7	ENSG00000108688.11	transcript	ENST00000378569.2	protein_coding		2599		chr17	TogoVar
CCL7_chr17_34265221_34277242	34274876	G G	GAGAAGGA others(5): Show GAGAAGGAGAATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01346.hp2 HG02109.hp1 HG02717.hp2 others(2): Show HG01346.hp2 HG02109.hp1 HG02717.hp2 HG02895.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	5	428	0.0117	12	c.30 others(23): Show c.3074_*3075insAGAAGGAGAATT	CCL7	ENSG00000108688.11	transcript	ENST00000378569.2	protein_coding		2635		chr17	TogoVar
CCM2L_chr20_32005438_32037180	32015859	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0156 a0001c0001t0002g0156	1	300	0.0033	12	c.198 others(27): Show c.198+792_198+803dupTTTTTTTTTTTT	CCM2L	ENSG00000101331.17	transcript	ENST00000452892.3	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr20	TogoVar
CCM2L_chr20_32005438_32037180	32025056	C C	CTTCTTTC others(5): Show CTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0008 a0008	a0008c0015 a0008c0015	a0008c0015t0002 a0008c0015t0002	a0008c0015t0002g0074 a0008c0015t0002g0074	1	300	0.0033	12	c.107 others(29): Show c.1070-783_1070-772dupTTCTTTCTTTCT	CCM2L	ENSG00000101331.17	transcript	ENST00000452892.3	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr20	TogoVar
CCM2_chr7_44995201_45081453	45051383	G G	GTATTTAT others(5): Show GTATTTATTTATT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03834.hp1 NA19043.hp2 HG02258.hp1 HG03834.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0118 a0001c0001t0001g0146 a0001c0001t0001g0088 a0001c0001t0001g0118 a0001c0001t0001g0146	3	316	0.0095	12	c.205 others(31): Show c.205-12514_205-12503dupTATTTATTTATT	CCM2	ENSG00000136280.17	transcript	ENST00000258781.11	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
CCM2_chr7_44995201_45081453	45078444	A A	AAGAAAGT others(5): Show AAGAAAGTGGCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0002 a0002c0005t0002	a0002c0005t0002g0042 a0002c0005t0002g0042	1	316	0.0032	12	c.23 others(23): Show c.2387_*2388insAGAAAGTGGCAC	CCM2	ENSG00000136280.17	transcript	ENST00000258781.11	protein_coding		1992		chr7	TogoVar
CCN1_chr1_85575761_85588950	85580462	G G	GACACACA others(5): Show GACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18986.hp1 NA19057.hp2 NA19087.hp1 others(1): Show NA18986.hp1 NA19057.hp2 NA19087.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	4	466	0.0086	12	c.-52 others(21): Show c.-523_-522insACACACACACAC	CCN1	ENSG00000142871.18	transcript	ENST00000451137.7	protein_coding		298		chr1	TogoVar
CCN1_chr1_85575761_85588950	85580544	G G	GACACACA others(5): Show GACACACAGACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	466	0.0022	12	c.-44 others(21): Show c.-441_-440insACACACAGACAC	CCN1	ENSG00000142871.18	transcript	ENST00000451137.7	protein_coding		216		chr1	TogoVar
CCN3_chr8_119411446_119429434	119415655	A A	ATGTGTGT others(5): Show ATGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0005 a0001c0001t0001 a0002c0002t0005	a0001c0001t0001g0004 a0002c0002t0005g0020 a0001c0001t0001g0004 a0002c0002t0005g0020	2	352	0.0057	12	c.-87 others(21): Show c.-878_-877insTGTGTGTGTGTG	CCN3	ENSG00000136999.5	transcript	ENST00000259526.4	protein_coding		790		chr8	TogoVar
CCN4_chr8_133186039_133236690	133186902	G G	GCCCCTCC others(5): Show GCCCCTCCATTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0335 a0001c0001t0001g0335	1	396	0.0025	12	c.-42 others(23): Show c.-4243_-4242insCCCCTCCATTCC	CCN4	ENSG00000104415.14	transcript	ENST00000250160.11	protein_coding		4136		chr8	TogoVar
CCN4_chr8_133186039_133236690	133190559	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp1 HG00423.hp2 HG00733.hp1 others(25): Show HG00323.hp1 HG00423.hp2 HG00733.hp1 HG00738.hp1 HG01069.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG02015.hp1 HG02300.hp2 HG02486.hp1 HG02735.hp1 HG03831.hp2 HG04184.hp2 NA18955.hp1 NA18956.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18969.hp1 NA18979.hp2 NA18995.hp2 NA19074.hp1 NA19085.hp1 NA20752.hp1 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0002 a0002c0004 others(1): Show a0001c0001 a0001c0002 a0002c0004 a0007c0017	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0002t0004 a0002c0004t0004 a0007c0017t0001	a0001c0001t0001g0002 a0001c0001t0001g0019 a0001c0001t0001g0021 others(24): Show a0001c0001t0001g0002 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0039 a0001c0001t0001g0055 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0086 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0038 a0001c0001t0002g0054 a0001c0002t0003g0033 a0001c0002t0003g0040 a0001c0002t0003g0048 a0001c0002t0003g0049 a0001c0002t0003g0075 a0001c0002t0003g0083 a0001c0002t0003g0084 a0001c0002t0003g0088 a0001c0002t0004g0091 a0002c0004t0004g0046 a0002c0004t0004g0074 a0007c0017t0001g0059	28	396	0.0707	12	c.-58 others(21): Show c.-586_-585insAAAAAAAAAAAA	CCN4	ENSG00000104415.14	transcript	ENST00000250160.11	protein_coding		479		chr8	TogoVar
CCN4_chr8_133186039_133236690	133214507	G G	GGTTGTTG others(5): Show GGTTGTTGTTGTT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01109.hp2 HG01243.hp2 others(11): Show HG01106.hp1 HG01109.hp2 HG01243.hp2 HG01884.hp1 HG02145.hp1 HG02280.hp1 HG02622.hp2 HG02647.hp2 HG02809.hp2 HG02896.hp1 HG03041.hp1 HG03130.hp1 NA18522.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0006 a0001c0001t0020 others(4): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0020 a0001c0002t0010 a0001c0002t0011 a0001c0002t0012 a0001c0002t0021	a0001c0001t0001g0256 a0001c0001t0001g0263 a0001c0001t0001g0272 others(11): Show a0001c0001t0001g0256 a0001c0001t0001g0263 a0001c0001t0001g0272 a0001c0001t0001g0345 a0001c0001t0006g0264 a0001c0001t0020g0042 a0001c0002t0010g0261 a0001c0002t0010g0262 a0001c0002t0010g0269 a0001c0002t0011g0237 a0001c0002t0011g0265 a0001c0002t0011g0266 a0001c0002t0012g0106 a0001c0002t0021g0043	14	396	0.0354	12	c.349 others(29): Show c.349+1377_349+1388dupGTTGTTGTTGTT	CCN4	ENSG00000104415.14	transcript	ENST00000250160.11	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
CCN4_chr8_133186039_133236690	133217936	C C	CCACACAC others(5): Show CCACACACACACA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03041.hp2 HG02717.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0002 a0001c0012t0001 a0001c0001t0002 a0001c0012t0001	a0001c0001t0002g0239 a0001c0012t0001g0067 a0001c0001t0002g0239 a0001c0012t0001g0067	2	396	0.0051	12	c.350 others(29): Show c.350-2631_350-2620dupACACACACACAC	CCN4	ENSG00000104415.14	transcript	ENST00000250160.11	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
CCN5_chr20_44710369_44732811	44712274	G G	GGAAAGAA others(5): Show GGAAAGAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG00673.hp2 HG00741.hp1 others(17): Show HG00639.hp2 HG00673.hp2 HG00741.hp1 HG01074.hp1 HG01981.hp2 HG02056.hp1 HG02056.hp2 HG02155.hp2 HG03831.hp2 HG04228.hp2 NA18747.hp1 NA18962.hp1 NA18994.hp1 NA19000.hp1 NA19004.hp2 NA19030.hp2 NA19054.hp1 NA19060.hp1 NA19086.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 a0001c0002t0004 a0001c0002t0007	a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0020 others(13): Show a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0088 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0153 a0001c0001t0001g0157 a0001c0001t0002g0002 a0001c0001t0002g0037 a0001c0001t0002g0148 a0001c0001t0003g0030 a0001c0002t0002g0006 a0001c0002t0004g0024 a0001c0002t0007g0005	20	446	0.0448	12	c.-31 others(23): Show c.-3117_-3116insGAAAGAAAGAAA	CCN5	ENSG00000064205.11	transcript	ENST00000190983.5	protein_coding		3094		chr20	TogoVar
CCN5_chr20_44710369_44732811	44730482	T T	TTAAATAA others(5): Show TTAAATAAATAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp2 HG02818.hp2 NA18941.hp1 others(11): Show HG02622.hp2 HG02818.hp2 NA18941.hp1 NA18952.hp1 NA18954.hp1 NA18956.hp1 NA18963.hp2 NA18971.hp2 NA18983.hp2 NA18998.hp2 NA19003.hp1 NA19065.hp1 NA19086.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0002t0003 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003	a0001c0001t0003g0003 a0001c0001t0003g0022 a0001c0002t0001g0026 others(3): Show a0001c0001t0003g0003 a0001c0001t0003g0022 a0001c0002t0001g0026 a0001c0002t0003g0003 a0001c0002t0003g0004 a0001c0002t0003g0005	14	446	0.0314	12	c.31 others(23): Show c.3175_*3176insTAAATAAATAAA	CCN5	ENSG00000064205.11	transcript	ENST00000190983.5	protein_coding		2672		chr20	TogoVar
CCN5_chr20_44710369_44732811	44731454	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG00738.hp2 HG01069.hp2 others(27): Show HG00544.hp1 HG00738.hp2 HG01069.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp2 HG01192.hp2 HG01361.hp1 HG01361.hp2 HG02027.hp2 HG02071.hp2 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02818.hp1 HG02886.hp1 HG02965.hp2 HG02970.hp2 HG03139.hp1 HG03195.hp1 HG03942.hp1 NA18906.hp2 NA18967.hp2 NA18969.hp1 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19010.hp2 NA19060.hp1 NA19063.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0002 a0006c0011 a0001c0001 a0001c0002 a0006c0011	a0001c0001t0001 a0001c0002t0001 a0006c0011t0001 a0001c0001t0001 a0001c0002t0001 a0006c0011t0001	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0016 others(17): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0052 a0001c0001t0001g0063 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0104 a0001c0002t0001g0014 a0001c0002t0001g0019 a0001c0002t0001g0029 a0001c0002t0001g0038 a0001c0002t0001g0064 a0006c0011t0001g0015	30	446	0.0673	12	c.41 others(23): Show c.4147_*4148insAAAAAAAAAAAA	CCN5	ENSG00000064205.11	transcript	ENST00000190983.5	protein_coding		3644		chr20	TogoVar
CCN6_chr6_112049104_112074686	112055579	C C	CTTTATTT others(5): Show CTTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02257.hp1 HG02572.hp1 others(8): Show HG02109.hp1 HG02257.hp1 HG02572.hp1 HG02615.hp1 HG02886.hp2 HG03195.hp1 HG03225.hp1 HG03471.hp1 HG03471.hp2 NA20300.hp1 NA21309.hp1	a0002 a0002	a0002c0002 a0002c0003 a0002c0008 a0002c0002 a0002c0003 a0002c0008	a0002c0002t0002 a0002c0003t0001 a0002c0008t0001 a0002c0002t0002 a0002c0003t0001 a0002c0008t0001	a0002c0002t0002g0044 a0002c0003t0001g0008 a0002c0003t0001g0095 others(2): Show a0002c0002t0002g0044 a0002c0003t0001g0008 a0002c0003t0001g0095 a0002c0008t0001g0082 a0002c0008t0001g0083	11	430	0.0256	12	c.48+ others(27): Show c.48+1191_48+1202dupTTTATTTATTTA	CCN6	ENSG00000112761.22	transcript	ENST00000368666.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr6	TogoVar
CCN6_chr6_112049104_112074686	112065616	A A	ACACACAC others(5): Show ACACACACGCGCG	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00423.hp2 others(95): Show HG00099.hp1 HG00280.hp2 HG00423.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00642.hp2 HG00673.hp1 HG00733.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp1 HG01175.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01891.hp1 HG01934.hp1 HG01943.hp2 HG01978.hp2 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02080.hp1 HG02083.hp1 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02523.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02698.hp1 HG02738.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03195.hp1 HG03225.hp1 HG03471.hp1 HG03490.hp2 HG03492.hp1 HG03540.hp2 HG03654.hp1 HG03831.hp1 HG03834.hp2 HG04199.hp1 HG06807.hp2 NA18906.hp1 NA18940.hp2 NA18942.hp2 NA18943.hp1 NA18945.hp1 NA18949.hp2 NA18953.hp2 NA18955.hp1 NA18963.hp1 NA18964.hp2 NA18966.hp1 NA18969.hp2 NA18970.hp1 NA18979.hp2 NA18980.hp2 NA18985.hp2 NA18999.hp1 NA19000.hp1 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19054.hp2 NA19057.hp1 NA19063.hp1 NA19063.hp2 NA19066.hp2 NA19067.hp2 NA19070.hp2 NA19074.hp1 NA19075.hp2 NA19079.hp1 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19088.hp2 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20805.hp2 NA21309.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0002c0003 others(1): Show a0001c0001 a0002c0002 a0002c0003 a0004c0007	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0002c0003t0001 a0004c0007t0002	a0001c0001t0001g0065 a0001c0001t0002g0001 a0002c0002t0001g0053 others(19): Show a0001c0001t0001g0065 a0001c0001t0002g0001 a0002c0002t0001g0053 a0002c0002t0001g0079 a0002c0002t0001g0081 a0002c0002t0002g0001 a0002c0002t0002g0010 a0002c0002t0002g0017 a0002c0002t0002g0022 a0002c0002t0002g0034 a0002c0002t0002g0036 a0002c0002t0002g0037 a0002c0002t0002g0038 a0002c0002t0002g0039 a0002c0002t0002g0041 a0002c0002t0002g0042 a0002c0003t0001g0008 a0002c0003t0001g0094 a0002c0003t0001g0095 a0002c0003t0001g0096 a0004c0007t0002g0021 a0004c0007t0002g0032	98	430	0.2279	12	c.589 others(27): Show c.589+624_589+625insACGCGCGCACAC	CCN6	ENSG00000112761.22	transcript	ENST00000368666.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr6	TogoVar

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