Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CCR3_chr3_46237460_46271706	46241166	G G	GCTCTCTC others(5): Show GCTCTCTCTCTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00544.hp2 others(117): Show HG00099.hp2 HG00140.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01081.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01361.hp1 HG01433.hp2 HG01516.hp1 HG01884.hp2 HG01975.hp1 HG02004.hp2 HG02015.hp2 HG02027.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp1 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02148.hp1 HG02258.hp2 HG02300.hp2 HG02486.hp2 HG02572.hp2 HG02615.hp2 HG02683.hp2 HG02717.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03130.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03704.hp1 HG03927.hp2 HG04199.hp2 HG04204.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18939.hp2 NA18942.hp1 NA18946.hp2 NA18947.hp2 NA18951.hp1 NA18955.hp2 NA18957.hp1 NA18962.hp1 NA18963.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp1 NA18972.hp2 NA18974.hp1 NA18982.hp1 NA18983.hp2 NA18984.hp2 NA18985.hp1 NA18989.hp1 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18993.hp1 NA18995.hp1 NA18997.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp2 NA19007.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19066.hp1 NA19074.hp2 NA19079.hp1 NA19081.hp1 NA19083.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0002c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0008 others(58): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0022 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0060 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0003g0081 a0001c0002t0001g0018 a0001c0002t0001g0109 a0001c0002t0001g0119 a0001c0002t0001g0123 a0002c0004t0001g0073 a0002c0004t0001g0074	120	408	0.2941	12	c.-13 others(23): Show c.-1384_-1383insCTCTCTCTCTCT	CCR3	ENSG00000183625.16	transcript	ENST00000395940.3	protein_coding		1293		chr3	TogoVar
CCR4_chr3_32946644_32961349	32958277	A A	ATATTTAT others(5): Show ATATTTATTTATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG00609.hp2 HG01109.hp1 others(17): Show HG00558.hp1 HG00609.hp2 HG01109.hp1 HG01358.hp1 HG02027.hp1 HG02074.hp1 HG02451.hp2 HG02683.hp2 HG02723.hp2 HG03209.hp1 HG03669.hp2 NA18942.hp2 NA18950.hp2 NA18969.hp2 NA18970.hp2 NA18992.hp1 NA19006.hp1 NA19030.hp2 NA19065.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010	a0001c0001t0001g0001 a0001c0001t0002g0001 a0001c0001t0002g0012 others(4): Show a0001c0001t0001g0001 a0001c0001t0002g0001 a0001c0001t0002g0012 a0001c0001t0002g0014 a0001c0001t0005g0003 a0001c0001t0007g0001 a0001c0001t0010g0001	20	388	0.0516	12	c.37 others(23): Show c.3772_*3773insTATTTATTTATT	CCR4	ENSG00000183813.7	transcript	ENST00000330953.6	protein_coding		1929		chr3	TogoVar
CCR5_chr3_46365946_46381206	46379897	A A	AAAATAAA others(5): Show AAAATAAATAAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0005 a0001c0001t0005g0005	1	422	0.0024	12	c.59 others(23): Show c.5936_*5937insAAATAAATAAAT	CCR5	ENSG00000160791.14	transcript	ENST00000292303.5	protein_coding		3692		chr3	TogoVar
CCR6_chr6_167118096_167144141	167133932	G G	GTATATAT others(5): Show GTATATATATATA	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02074.hp2 HG02083.hp2 others(11): Show HG02056.hp2 HG02074.hp2 HG02083.hp2 HG02129.hp2 HG02155.hp1 HG02280.hp1 HG02965.hp1 HG02976.hp2 HG03209.hp1 HG03704.hp1 NA18942.hp1 NA18967.hp1 NA18971.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 a0001c0001t0019 a0001c0002t0002 a0001c0002t0003 a0001c0002t0006 a0001c0002t0015 a0001c0003t0004	a0001c0001t0001g0220 a0001c0001t0001g0368 a0001c0001t0005g0139 others(11): Show a0001c0001t0001g0220 a0001c0001t0001g0368 a0001c0001t0005g0139 a0001c0001t0008g0350 a0001c0001t0019g0251 a0001c0002t0002g0309 a0001c0002t0003g0160 a0001c0002t0003g0206 a0001c0002t0003g0292 a0001c0002t0003g0365 a0001c0002t0006g0057 a0001c0002t0006g0094 a0001c0002t0015g0243 a0001c0003t0004g0064	14	460	0.0304	12	c.-97 others(29): Show c.-97-2079_-97-2068dupTATATATATATA	CCR6	ENSG00000112486.18	transcript	ENST00000341935.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
CCR6_chr6_167118096_167144141	167133932	G G	GTGTATAT others(5): Show GTGTATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00733.hp1 HG01070.hp1 others(27): Show HG00558.hp1 HG00733.hp1 HG01070.hp1 HG01071.hp2 HG01106.hp2 HG01243.hp2 HG01256.hp1 HG01361.hp1 HG01943.hp2 HG02027.hp2 HG03540.hp1 HG03579.hp1 NA18612.hp2 NA18906.hp1 NA18940.hp1 NA18946.hp1 NA18949.hp1 NA18952.hp1 NA18966.hp2 NA18988.hp2 NA18995.hp1 NA18999.hp1 NA19003.hp1 NA19009.hp2 NA19056.hp1 NA19062.hp2 NA19086.hp1 NA19088.hp1 NA19089.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0012 a0001c0002t0002 a0001c0002t0003 a0001c0002t0015	a0001c0001t0001g0029 a0001c0001t0001g0051 a0001c0001t0001g0055 others(24): Show a0001c0001t0001g0029 a0001c0001t0001g0051 a0001c0001t0001g0055 a0001c0001t0001g0070 a0001c0001t0001g0116 a0001c0001t0001g0142 a0001c0001t0001g0159 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0201 a0001c0001t0002g0117 a0001c0001t0002g0270 a0001c0001t0005g0029 a0001c0001t0007g0061 a0001c0001t0007g0133 a0001c0001t0012g0296 a0001c0002t0002g0028 a0001c0002t0002g0030 a0001c0002t0002g0075 a0001c0002t0002g0183 a0001c0002t0002g0217 a0001c0002t0002g0218 a0001c0002t0002g0304 a0001c0002t0003g0111 a0001c0002t0003g0230 a0001c0002t0015g0088	30	460	0.0652	12	c.-97 others(29): Show c.-97-2105_-97-2104insGTATATATATAT	CCR6	ENSG00000112486.18	transcript	ENST00000341935.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
CCR6_chr6_167118096_167144141	167133932	G G	GTGTGTAT others(5): Show GTGTGTATATATA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02132.hp1 HG00544.hp2 HG02132.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0179 a0001c0002t0002g0189 a0001c0002t0002g0179 a0001c0002t0002g0189	2	460	0.0044	12	c.-97 others(29): Show c.-97-2105_-97-2104insGTGTATATATAT	CCR6	ENSG00000112486.18	transcript	ENST00000341935.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
CCR6_chr6_167118096_167144141	167133964	A A	ATATATAT others(5): Show ATATATATATATG	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0035 a0001c0003t0035	a0001c0003t0035g0274 a0001c0003t0035g0274	1	460	0.0022	12	c.-97 others(29): Show c.-97-2068_-97-2067insTATATGTATATA	CCR6	ENSG00000112486.18	transcript	ENST00000341935.10	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
CCR8_chr3_39324709_39338680	39337233	C C	CATATATA others(5): Show CATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG02257.hp2 NA18949.hp2 others(4): Show HG00673.hp2 HG02257.hp2 NA18949.hp2 NA18951.hp2 NA18984.hp2 NA18986.hp2 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0002 a0001c0001t0001g0004	7	398	0.0176	12	c.38 others(23): Show c.3834_*3835insATATATATATAT	CCR8	ENSG00000179934.7	transcript	ENST00000326306.5	protein_coding		3554		chr3	TogoVar
CCSAP_chr1_229316015_229348047	229331787	T T	TTTATTAT others(5): Show TTTATTATTATTA	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01258.hp1 HG01261.hp1 others(7): Show HG01257.hp1 HG01258.hp1 HG01261.hp1 HG02155.hp1 HG02630.hp1 NA18954.hp1 NA18988.hp1 NA19058.hp2 NA19068.hp2 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0002t0002	a0001c0001t0001g0043 a0001c0001t0001g0081 a0001c0001t0001g0283 others(6): Show a0001c0001t0001g0043 a0001c0001t0001g0081 a0001c0001t0001g0283 a0001c0001t0001g0358 a0001c0001t0004g0024 a0001c0001t0004g0293 a0001c0001t0004g0384 a0001c0001t0005g0275 a0001c0002t0002g0302	10	436	0.0229	12	c.368 others(29): Show c.368-4793_368-4782dupTAATAATAATAA	CCSAP	ENSG00000154429.11	transcript	ENST00000284617.7	protein_coding	2/3			chr1	TogoVar
CCSAP_chr1_229316015_229348047	229337678	A A	AAAAAATA others(5): Show AAAAAATATATAT	intron_variant intron_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0144 a0001c0002t0002g0144	1	436	0.0023	12	c.367 others(29): Show c.367+4420_367+4421insATATATATTTTT	CCSAP	ENSG00000154429.11	transcript	ENST00000284617.7	protein_coding	2/3			chr1	TogoVar
CCSAP_chr1_229316015_229348047	229337717	A A	ATATATAT others(5): Show ATATATATATATG	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00408.hp1 HG00408.hp2 others(73): Show HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp2 HG00558.hp2 HG00642.hp1 HG00738.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp2 HG01516.hp1 HG01975.hp1 HG02027.hp1 HG02080.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02486.hp2 HG02559.hp2 HG02602.hp2 HG02630.hp2 HG02717.hp1 HG02738.hp1 HG02976.hp1 HG03139.hp1 HG03492.hp1 HG03669.hp2 HG03710.hp1 NA18940.hp1 NA18942.hp2 NA18946.hp2 NA18951.hp2 NA18955.hp2 NA18957.hp2 NA18961.hp2 NA18968.hp2 NA18969.hp2 NA18975.hp1 NA18980.hp1 NA18981.hp1 NA18985.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19043.hp1 NA19058.hp1 NA19063.hp2 NA19064.hp1 NA19070.hp2 NA19077.hp2 NA19081.hp1 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp2 NA20752.hp2 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 a0001c0001t0019 a0001c0001t0020 a0001c0001t0028 a0001c0002t0002 a0001c0002t0007 a0001c0002t0011 a0001c0002t0016 a0001c0002t0017 a0001c0002t0026	a0001c0001t0001g0336 a0001c0001t0003g0006 a0001c0001t0003g0025 others(67): Show a0001c0001t0001g0336 a0001c0001t0003g0006 a0001c0001t0003g0025 a0001c0001t0003g0026 a0001c0001t0003g0027 a0001c0001t0003g0117 a0001c0001t0003g0126 a0001c0001t0003g0131 a0001c0001t0003g0132 a0001c0001t0003g0177 a0001c0001t0003g0187 a0001c0001t0003g0196 a0001c0001t0003g0206 a0001c0001t0003g0207 a0001c0001t0003g0226 a0001c0001t0003g0227 a0001c0001t0003g0236 a0001c0001t0003g0246 a0001c0001t0003g0247 a0001c0001t0003g0252 a0001c0001t0003g0262 a0001c0001t0003g0267 a0001c0001t0003g0268 a0001c0001t0003g0269 a0001c0001t0003g0286 a0001c0001t0003g0290 a0001c0001t0003g0291 a0001c0001t0003g0294 a0001c0001t0003g0296 a0001c0001t0003g0298 a0001c0001t0003g0299 a0001c0001t0003g0333 a0001c0001t0003g0334 a0001c0001t0003g0335 a0001c0001t0003g0341 a0001c0001t0003g0364 a0001c0001t0003g0373 a0001c0001t0003g0379 a0001c0001t0003g0386 a0001c0001t0012g0134 a0001c0001t0012g0204 a0001c0001t0012g0348 a0001c0001t0019g0297 a0001c0001t0020g0242 a0001c0001t0028g0378 a0001c0002t0002g0036 a0001c0002t0002g0052 a0001c0002t0002g0068 a0001c0002t0002g0069 a0001c0002t0002g0208 a0001c0002t0002g0243 a0001c0002t0002g0244 a0001c0002t0002g0245 a0001c0002t0002g0248 a0001c0002t0002g0249 a0001c0002t0002g0250 a0001c0002t0002g0261 a0001c0002t0002g0315 a0001c0002t0002g0318 a0001c0002t0002g0320 a0001c0002t0002g0322 a0001c0002t0002g0323 a0001c0002t0002g0337 a0001c0002t0007g0260 a0001c0002t0011g0178 a0001c0002t0011g0317 a0001c0002t0011g0319 a0001c0002t0016g0321 a0001c0002t0017g0039 a0001c0002t0026g0251	76	436	0.1743	12	c.367 others(29): Show c.367+4381_367+4382insCATATATATATA	CCSAP	ENSG00000154429.11	transcript	ENST00000284617.7	protein_coding	2/3			chr1	TogoVar
CCSAP_chr1_229316015_229348047	229338538	A A	AACACACA others(5): Show AACACACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	436	0.0023	12	c.367 others(29): Show c.367+3549_367+3560dupGTGTGTGTGTGT	CCSAP	ENSG00000154429.11	transcript	ENST00000284617.7	protein_coding	2/3			chr1	TogoVar
CCSAP_chr1_229316015_229348047	229345525	A A	AACACACA others(5): Show AACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp2 HG02109.hp2 HG02486.hp2 others(4): Show HG02055.hp2 HG02109.hp2 HG02486.hp2 HG02647.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0015 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0015 a0001c0001t0028 a0001c0001t0029	a0001c0001t0001g0377 a0001c0001t0005g0012 a0001c0001t0005g0121 others(3): Show a0001c0001t0001g0377 a0001c0001t0005g0012 a0001c0001t0005g0121 a0001c0001t0015g0276 a0001c0001t0028g0378 a0001c0001t0029g0120	7	436	0.0161	12	c.-26 others(23): Show c.-2663_-2662insGTGTGTGTGTGT	CCSAP	ENSG00000154429.11	transcript	ENST00000284617.7	protein_coding		2479		chr1	TogoVar
CCSER1_chr4_90122394_91610295	90141020	A A	ATATCTAT others(5): Show ATATCTATCTATC	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02109.hp1 HG03017.hp1 others(2): Show HG01192.hp1 HG02109.hp1 HG03017.hp1 HG03017.hp2 HG03139.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0008 a0002c0002 a0001c0001 a0001c0008 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0011 a0001c0008t0019 a0002c0002t0017	a0001c0001t0001g0016 a0001c0001t0003g0034 a0001c0001t0011g0003 others(2): Show a0001c0001t0001g0016 a0001c0001t0003g0034 a0001c0001t0011g0003 a0001c0008t0019g0029 a0002c0002t0017g0008	5	38	0.1316	12	c.-42 others(31): Show c.-42+13221_-42+13232dupCTATCTATCTAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90196656	T T	TACACACA others(5): Show TACACACACACAC	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01243.hp1 HG01243.hp2 others(10): Show HG01099.hp2 HG01243.hp1 HG01243.hp2 HG01884.hp2 HG02109.hp1 HG02717.hp2 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03516.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0002c0002 a0003c0005 others(2): Show a0001c0001 a0002c0002 a0003c0005 a0004c0004 a0005c0007	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 others(10): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0015 a0001c0001t0020 a0002c0002t0001 a0002c0002t0018 a0003c0005t0005 a0004c0004t0004 a0005c0007t0012	a0001c0001t0003g0034 a0001c0001t0004g0005 a0001c0001t0005g0017 others(10): Show a0001c0001t0003g0034 a0001c0001t0004g0005 a0001c0001t0005g0017 a0001c0001t0007g0036 a0001c0001t0008g0038 a0001c0001t0009g0037 a0001c0001t0015g0019 a0001c0001t0020g0033 a0002c0002t0001g0006 a0002c0002t0018g0009 a0003c0005t0005g0011 a0004c0004t0004g0018 a0005c0007t0012g0010	13	38	0.3421	12	c.-42 others(31): Show c.-42+68847_-42+68858dupCACACACACACA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90200061	G G	GACACACA others(5): Show GACACACACACAC	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02809.hp2 HG02723.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0008 a0001c0001t0004 a0001c0001t0008	a0001c0001t0004g0022 a0001c0001t0008g0038 a0001c0001t0004g0022 a0001c0001t0008g0038	2	38	0.0526	12	c.-42 others(31): Show c.-42+72251_-42+72262dupACACACACACAC	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90271826	T T	TTATATAT others(5): Show TTATATATATATA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0010 a0003c0005t0010	a0003c0005t0010g0004 a0003c0005t0010g0004	1	38	0.0263	12	c.-41 others(31): Show c.-41-36392_-41-36381dupATATATATATAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90271862	A A	ATATATAT others(5): Show ATATATATATATT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0019 a0001c0001t0015g0019	1	38	0.0263	12	c.-41 others(31): Show c.-41-36381_-41-36380insATATATATATTT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90276186	T T	TTTTCTTT others(5): Show TTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	38	0.0263	12	c.-41 others(31): Show c.-41-32001_-41-31990dupTTTCTTTCTTTC	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90276251	T T	TTTCCTTC others(5): Show TTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0013 a0002c0002t0003g0013	1	38	0.0263	12	c.-41 others(31): Show c.-41-31946_-41-31935dupCCTTCCTTCCTT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90347311	C C	CTCTATCT others(5): Show CTCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0019 a0001c0008t0019	a0001c0008t0019g0029 a0001c0008t0019g0029	1	38	0.0263	12	c.150 others(33): Show c.1509+34294_1509+34305dupCTATCTATCTAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90391504	A A	AATATATA others(5): Show AATATATATATAT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0005 a0003c0005t0005	a0003c0005t0005g0011 a0003c0005t0005g0011	1	38	0.0263	12	c.151 others(31): Show c.1510-8516_1510-8505dupTATATATATATA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90438774	T T	TTCTATCT others(5): Show TTCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0005 a0001c0001t0004g0005	1	38	0.0263	12	c.160 others(33): Show c.1604-29435_1604-29424dupTCTATCTATCTA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90460324	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03139.hp1 HG02717.hp2 HG03139.hp1	a0001 a0002 a0001 a0002	a0001c0008 a0002c0002 a0001c0008 a0002c0002	a0001c0008t0019 a0002c0002t0001 a0001c0008t0019 a0002c0002t0001	a0001c0008t0019g0029 a0002c0002t0001g0006 a0001c0008t0019g0029 a0002c0002t0001g0006	2	38	0.0526	12	c.160 others(31): Show c.1604-7900_1604-7889dupAAAAAAAAAAAA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90469524	A A	AACACACA others(5): Show AACACACACACAC	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02809.hp2 HG02717.hp1 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0003 a0001c0001t0008	a0001c0001t0003g0012 a0001c0001t0008g0038 a0001c0001t0003g0012 a0001c0001t0008g0038	2	38	0.0526	12	c.172 others(31): Show c.1724+1202_1724+1213dupCACACACACACA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90551678	T T	TTCTCTCT others(5): Show TTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0037 a0001c0001t0009g0037	1	38	0.0263	12	c.172 others(33): Show c.1725-76329_1725-76318dupCTCTCTCTCTCT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90551704	C C	CTATATAT others(5): Show CTATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0034 a0001c0001t0003g0034	1	38	0.0263	12	c.172 others(33): Show c.1725-76320_1725-76319insATATATATATAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90551706	C C	CTATATAT others(5): Show CTATATATATATA	intron_variant intron_variant	MODIFIER	HG03209.hp2 NA19240.hp1 HG03209.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0013 a0001c0001t0007 a0001c0001t0013	a0001c0001t0007g0036 a0001c0001t0013g0035 a0001c0001t0007g0036 a0001c0001t0013g0035	2	38	0.0526	12	c.172 others(33): Show c.1725-76309_1725-76298dupATATATATATAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90551706	C C	CTCTCTCT others(5): Show CTCTCTCTCTCTA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0019 a0001c0001t0015g0019	1	38	0.0263	12	c.172 others(33): Show c.1725-76318_1725-76317insCTCTCTCTCTAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90611059	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03516.hp2 NA19240.hp2 HG03516.hp2 NA19240.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0007 a0004c0004t0004 a0001c0001t0007 a0004c0004t0004	a0001c0001t0007g0007 a0004c0004t0004g0018 a0001c0001t0007g0007 a0004c0004t0004g0018	2	38	0.0526	12	c.172 others(33): Show c.1725-16957_1725-16946dupTTTTTTTTTTTT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90815526	A A	ATGTGTGT others(5): Show ATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02258.hp1 HG02723.hp2 others(1): Show HG01192.hp1 HG02258.hp1 HG02723.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0001t0011	a0001c0001t0001g0024 a0001c0001t0004g0022 a0001c0001t0009g0037 others(1): Show a0001c0001t0001g0024 a0001c0001t0004g0022 a0001c0001t0009g0037 a0001c0001t0011g0003	4	38	0.1053	12	c.201 others(29): Show c.2011-226_2011-215dupGTGTGTGTGTGT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90861905	C C	CATATATA others(5): Show CATATATATATAT	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA18906.hp1 HG02809.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0008 a0001c0001t0001 a0002c0002t0008	a0001c0001t0001g0002 a0002c0002t0008g0030 a0001c0001t0001g0002 a0002c0002t0008g0030	2	38	0.0526	12	c.209 others(33): Show c.2094+46071_2094+46082dupATATATATATAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90898269	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01192.hp2 HG01099.hp1 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0014 a0001c0001t0003 a0001c0001t0014	a0001c0001t0003g0031 a0001c0001t0014g0028 a0001c0001t0003g0031 a0001c0001t0014g0028	2	38	0.0526	12	c.209 others(33): Show c.2095-25082_2095-25071dupTTTTTTTTTTTT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90905358	C C	CTACACAC others(5): Show CTACACACACACA	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA18906.hp1 HG02809.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0008 a0001c0001t0001 a0002c0002t0008	a0001c0001t0001g0002 a0002c0002t0008g0030 a0001c0001t0001g0002 a0002c0002t0008g0030	2	38	0.0526	12	c.209 others(33): Show c.2095-18012_2095-18011insTACACACACACA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	8/10			chr4	TogoVar
CCSER1_chr4_90122394_91610295	90932982	G G	GAAAGAAA others(5): Show GAAAGAAAGAGAA	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0017 a0002c0002t0017	a0002c0002t0017g0008 a0002c0002t0017g0008	1	38	0.0263	12	c.217 others(31): Show c.2172+9536_2172+9537insAAGAAAGAGAAA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	90937480	A A	AACACACA others(5): Show AACACACACACAC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02809.hp2 HG02723.hp1 HG02809.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0008 a0002c0002t0003 a0001c0001t0008 a0002c0002t0003	a0001c0001t0008g0038 a0002c0002t0003g0013 a0001c0001t0008g0038 a0002c0002t0003g0013	2	38	0.0526	12	c.217 others(33): Show c.2172+14045_2172+14056dupCACACACACACA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	91115841	T T	TTATATAT others(5): Show TTATATATATATA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0005 a0003c0005t0005	a0003c0005t0005g0011 a0003c0005t0005g0011	1	38	0.0263	12	c.221 others(33): Show c.2217+29855_2217+29866dupATATATATATAT	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	91392363	G G	GCACACAC others(5): Show GCACACACGCACA	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp2 HG03017.hp1 HG03017.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0017 a0001c0001t0001 a0002c0002t0017	a0001c0001t0001g0016 a0002c0002t0017g0008 a0001c0001t0001g0016 a0002c0002t0017g0008	2	38	0.0526	12	c.221 others(35): Show c.2218-206202_2218-206201insGCACACACACAC	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER1_chr4_90122394_91610295	91411491	C C	CATATATA others(5): Show CATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02809.hp1 HG02897.hp1 others(1): Show HG02109.hp2 HG02809.hp1 HG02897.hp1 HG03516.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0001c0003 a0006c0006 a0001c0001 a0001c0003 a0006c0006	a0001c0001t0001 a0001c0003t0002 a0006c0006t0016 a0001c0001t0001 a0001c0003t0002 a0006c0006t0016	a0001c0001t0001g0002 a0001c0001t0001g0032 a0001c0003t0002g0026 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0032 a0001c0003t0002g0026 a0006c0006t0016g0020	4	38	0.1053	12	c.221 others(35): Show c.2218-187057_2218-187046dupTATATATATATA	CCSER1	ENSG00000184305.16	transcript	ENST00000509176.6	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
CCSER2_chr10_84323589_84523517	84332436	A A	ATATATAT others(5): Show ATATATATATATT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG03130.hp1 HG03492.hp2 HG00099.hp1 HG03130.hp1 HG03492.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0002 a0005c0007t0002 a0001c0001t0002 a0005c0007t0002	a0001c0001t0002g0029 a0005c0007t0002g0050 a0005c0007t0002g0051 a0001c0001t0002g0029 a0005c0007t0002g0050 a0005c0007t0002g0051	3	370	0.0081	12	c.-40 others(29): Show c.-40+3629_-40+3630insATATATATATTT	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84385004	A A	AACACACA others(5): Show AACACACACACAC	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00738.hp1 HG01496.hp1 others(16): Show HG00280.hp2 HG00738.hp1 HG01496.hp1 HG01515.hp2 HG02004.hp1 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02273.hp1 HG02683.hp1 HG02809.hp2 HG02970.hp2 NA18971.hp2 NA18975.hp1 NA18979.hp1 NA18994.hp2 NA19010.hp1 NA19078.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0002c0003 a0003c0004 a0002c0002 a0002c0003 a0003c0004	a0002c0002t0005 a0002c0003t0006 a0003c0004t0007 a0002c0002t0005 a0002c0003t0006 a0003c0004t0007	a0002c0002t0005g0080 a0002c0002t0005g0085 a0002c0002t0005g0091 others(16): Show a0002c0002t0005g0080 a0002c0002t0005g0085 a0002c0002t0005g0091 a0002c0002t0005g0093 a0002c0002t0005g0098 a0002c0002t0005g0099 a0002c0002t0005g0340 a0002c0003t0006g0012 a0002c0003t0006g0013 a0002c0003t0006g0014 a0002c0003t0006g0015 a0002c0003t0006g0016 a0002c0003t0006g0017 a0002c0003t0006g0018 a0002c0003t0006g0021 a0002c0003t0006g0024 a0003c0004t0007g0046 a0003c0004t0007g0048 a0003c0004t0007g0049	19	370	0.0514	12	c.161 others(33): Show c.1614+11208_1614+11219dupACACACACACAC	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84394385	A A	ATGTGTGT others(5): Show ATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00597.hp2 HG00280.hp1 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0280 a0001c0001t0001g0313 a0001c0001t0001g0280 a0001c0001t0001g0313	2	370	0.0054	12	c.161 others(33): Show c.1614+20598_1614+20609dupGTGTGTGTGTGT	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84428985	G G	GTATATAT others(5): Show GTATATATATATA	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01074.hp1 HG01192.hp1 others(5): Show HG00733.hp2 HG01074.hp1 HG01192.hp1 HG01256.hp2 HG01433.hp2 HG01952.hp1 HG03486.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0192 a0001c0001t0002g0200 others(4): Show a0001c0001t0002g0001 a0001c0001t0002g0192 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0209	8	370	0.0216	12	c.186 others(31): Show c.1868+3111_1868+3122dupTATATATATATA	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84436325	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02717.hp2 NA19030.hp1 HG01884.hp1 HG02717.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0028 a0001c0001t0002g0059 a0001c0001t0002g0063 a0001c0001t0002g0028 a0001c0001t0002g0059 a0001c0001t0002g0063	3	370	0.0081	12	c.186 others(31): Show c.1869-2170_1869-2159dupAAAAAAAAAAAA	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84441736	G G	GTTTTTTT others(5): Show GTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA18939.hp2 HG02083.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0153 a0001c0001t0004g0168 a0001c0001t0004g0153 a0001c0001t0004g0168	2	370	0.0054	12	c.206 others(31): Show c.2064+3058_2064+3069dupTTTTTTTTTTTT	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84483995	A A	ATATATAT others(5): Show ATATATATATATG	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0098 a0002c0002t0005g0098	1	370	0.0027	12	c.232 others(31): Show c.2325+6333_2325+6334insTATATATATGTA	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84501834	A A	AAAAAATA others(5): Show AAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0221	1	370	0.0027	12	c.232 others(33): Show c.2326-11614_2326-11613insAAAATATATATA	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCSER2_chr10_84323589_84523517	84506796	A A	AAAATAAA others(5): Show AAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00423.hp1 HG00609.hp2 others(56): Show HG00099.hp1 HG00423.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG01109.hp1 HG01123.hp2 HG01261.hp1 HG01358.hp2 HG01361.hp2 HG01891.hp1 HG01978.hp2 HG01981.hp2 HG02004.hp2 HG02109.hp2 HG02145.hp2 HG02148.hp1 HG02257.hp2 HG02280.hp2 HG02293.hp1 HG02486.hp2 HG02622.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02886.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03492.hp2 HG03579.hp2 HG03710.hp1 NA18940.hp1 NA18947.hp1 NA18948.hp1 NA18950.hp1 NA18951.hp1 NA18967.hp2 NA18977.hp2 NA18987.hp2 NA18993.hp2 NA19007.hp1 NA19009.hp2 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19076.hp1 NA19077.hp2 NA19080.hp1 NA19087.hp2 NA19091.hp2 NA20129.hp1 NA20300.hp2 NA20805.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0002 a0001c0001t0008 a0001c0001t0009 others(3): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0009 a0001c0001t0021 a0001c0001t0022 a0005c0007t0002	a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 others(56): Show a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0053 a0001c0001t0002g0054 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0066 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0147 a0001c0001t0002g0198 a0001c0001t0002g0325 a0001c0001t0002g0326 a0001c0001t0002g0328 a0001c0001t0002g0329 a0001c0001t0002g0331 a0001c0001t0002g0332 a0001c0001t0002g0334 a0001c0001t0002g0335 a0001c0001t0002g0338 a0001c0001t0008g0242 a0001c0001t0008g0301 a0001c0001t0008g0302 a0001c0001t0008g0303 a0001c0001t0008g0304 a0001c0001t0008g0305 a0001c0001t0008g0306 a0001c0001t0008g0307 a0001c0001t0008g0308 a0001c0001t0008g0309 a0001c0001t0008g0321 a0001c0001t0008g0322 a0001c0001t0009g0003 a0001c0001t0009g0004 a0001c0001t0009g0006 a0001c0001t0009g0008 a0001c0001t0009g0009 a0001c0001t0009g0010 a0001c0001t0009g0011 a0001c0001t0021g0005 a0001c0001t0022g0060 a0005c0007t0002g0050 a0005c0007t0002g0051	59	370	0.1595	12	c.232 others(31): Show c.2326-6632_2326-6621dupAAATAAATAAAT	CCSER2	ENSG00000107771.17	transcript	ENST00000372088.8	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCS_chr11_66588185_66611019	66608906	A A	AAATAATA others(5): Show AAATAATAATAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp2 HG04204.hp2 NA18522.hp1 others(3): Show HG01433.hp2 HG04204.hp2 NA18522.hp1 NA18939.hp1 NA18999.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0001t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0035 a0001c0001t0004g0021 a0001c0002t0001g0048	6	404	0.0149	12	c.30 others(23): Show c.3051_*3052insAATAATAATAAT	CCS	ENSG00000173992.9	transcript	ENST00000533244.6	protein_coding		2888		chr11	TogoVar
CCT2_chr12_69580459_69606570	69580494	A A	ATTTTTTT others(5): Show ATTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18967.hp2 NA19090.hp2 NA18967.hp2 NA19090.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0006 a0001c0002t0002g0048 a0001c0002t0002g0006 a0001c0002t0002g0048	2	410	0.0049	12	c.-50 others(23): Show c.-5028_-5027insTTTTTTTTTTTT	CCT2	ENSG00000166226.13	transcript	ENST00000299300.11	protein_coding		4964		chr12	TogoVar

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