Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
ATRNL1_chr10_115088365_115953999	115527992	C C	CCCTTCCT others(5): Show CCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03486.hp2 HG03041.hp1 HG03486.hp2	a0001 a0001	a0001c0003 a0001c0011 a0001c0003 a0001c0011	a0001c0003t0003 a0001c0011t0002 a0001c0003t0003 a0001c0011t0002	a0001c0003t0003g0060 a0001c0011t0002g0116 a0001c0003t0003g0060 a0001c0011t0002g0116	2	128	0.0156	12	c.371 others(31): Show c.3716+8671_3716+8672insTCCTTCCTTCCT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	25/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115528037	T T	TCTTCCTT others(5): Show TCTTCCTTCCTTC	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02717.hp1 HG03453.hp2 others(1): Show HG02630.hp1 HG02717.hp1 HG03453.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 others(1): Show a0001c0001 a0001c0003 a0001c0006 a0001c0007	a0001c0001t0007 a0001c0003t0031 a0001c0006t0013 others(1): Show a0001c0001t0007 a0001c0003t0031 a0001c0006t0013 a0001c0007t0027	a0001c0001t0007g0027 a0001c0003t0031g0016 a0001c0006t0013g0029 others(1): Show a0001c0001t0007g0027 a0001c0003t0031g0016 a0001c0006t0013g0029 a0001c0007t0027g0006	4	128	0.0313	12	c.371 others(31): Show c.3716+8737_3716+8748dupCCTTCCTTCCTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	25/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115537700	A A	ATTGTTTG others(5): Show ATTGTTTGTTTGT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp1 HG00735.hp2 others(92): Show HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01258.hp1 HG01258.hp2 HG01361.hp1 HG01515.hp1 HG01515.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp2 HG02015.hp2 HG02055.hp1 HG02055.hp2 HG02132.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18957.hp1 NA18959.hp2 NA18994.hp1 NA18995.hp1 NA19003.hp2 NA19011.hp1 NA19030.hp1 NA19043.hp1 NA19043.hp2 NA19070.hp1 NA19240.hp1 NA19240.hp2 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0011 a0001c0012 a0001c0013 a0001c0015 a0002c0004 a0002c0008 a0002c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(56): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0029 a0001c0001t0035 a0001c0001t0036 a0001c0001t0042 a0001c0001t0043 a0001c0001t0048 a0001c0002t0001 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0028 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0004 a0001c0003t0014 a0001c0003t0015 a0001c0003t0037 a0001c0003t0038 a0001c0003t0039 a0001c0003t0041 a0001c0003t0045 a0001c0003t0047 a0001c0005t0018 a0001c0005t0021 a0001c0006t0009 a0001c0006t0013 a0001c0006t0033 a0001c0007t0030 a0001c0009t0005 a0001c0011t0002 a0001c0012t0001 a0001c0013t0009 a0001c0015t0034 a0002c0004t0002 a0002c0004t0006 a0002c0004t0007 a0002c0004t0012 a0002c0008t0011 a0002c0008t0044 a0002c0014t0009	a0001c0001t0001g0098 a0001c0001t0001g0120 a0001c0001t0001g0124 others(92): Show a0001c0001t0001g0098 a0001c0001t0001g0120 a0001c0001t0001g0124 a0001c0001t0002g0015 a0001c0001t0002g0077 a0001c0001t0002g0080 a0001c0001t0002g0111 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0002g0123 a0001c0001t0003g0104 a0001c0001t0007g0027 a0001c0001t0008g0014 a0001c0001t0008g0023 a0001c0001t0008g0030 a0001c0001t0008g0079 a0001c0001t0008g0082 a0001c0001t0010g0018 a0001c0001t0010g0033 a0001c0001t0010g0034 a0001c0001t0011g0112 a0001c0001t0011g0119 a0001c0001t0013g0019 a0001c0001t0015g0064 a0001c0001t0016g0031 a0001c0001t0017g0028 a0001c0001t0019g0020 a0001c0001t0020g0115 a0001c0001t0022g0032 a0001c0001t0023g0022 a0001c0001t0024g0024 a0001c0001t0025g0021 a0001c0001t0026g0010 a0001c0001t0029g0075 a0001c0001t0035g0118 a0001c0001t0036g0117 a0001c0001t0042g0095 a0001c0001t0043g0094 a0001c0001t0048g0107 a0001c0002t0001g0041 a0001c0002t0001g0045 a0001c0002t0001g0048 a0001c0002t0001g0050 a0001c0002t0001g0051 a0001c0002t0001g0052 a0001c0002t0001g0103 a0001c0002t0004g0039 a0001c0002t0004g0040 a0001c0002t0004g0054 a0001c0002t0004g0056 a0001c0002t0004g0058 a0001c0002t0004g0067 a0001c0002t0004g0127 a0001c0002t0005g0037 a0001c0002t0005g0043 a0001c0002t0005g0044 a0001c0002t0005g0046 a0001c0002t0005g0053 a0001c0002t0005g0057 a0001c0002t0006g0062 a0001c0002t0006g0086 a0001c0002t0028g0076 a0001c0003t0001g0083 a0001c0003t0002g0081 a0001c0003t0003g0049 a0001c0003t0003g0060 a0001c0003t0004g0042 a0001c0003t0014g0089 a0001c0003t0015g0108 a0001c0003t0037g0121 a0001c0003t0038g0106 a0001c0003t0039g0126 a0001c0003t0041g0047 a0001c0003t0045g0090 a0001c0003t0047g0128 a0001c0005t0018g0003 a0001c0005t0021g0007 a0001c0006t0009g0038 a0001c0006t0013g0029 a0001c0006t0033g0035 a0001c0007t0030g0008 a0001c0009t0005g0059 a0001c0011t0002g0116 a0001c0012t0001g0071 a0001c0013t0009g0078 a0001c0015t0034g0110 a0002c0004t0002g0012 a0002c0004t0002g0013 a0002c0004t0006g0084 a0002c0004t0007g0011 a0002c0004t0012g0025 a0002c0004t0012g0026 a0002c0008t0011g0073 a0002c0008t0044g0063 a0002c0014t0009g0072	95	128	0.7422	12	c.371 others(33): Show c.3717-11748_3717-11747insGTTTGTTTGTTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	25/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115559443	T T	TGTGTGCG others(5): Show TGTGTGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG06807.hp1 NA20752.hp1 HG02818.hp2 HG06807.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0003g0061 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0003g0061	3	128	0.0234	12	c.379 others(31): Show c.3795+9908_3795+9909insTGTGCGCGCGCG	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115559444	G G	GTGTGCGC others(5): Show GTGTGCGCAGCGC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0007 a0001c0005t0007	a0001c0005t0007g0002 a0001c0005t0007g0002	1	128	0.0078	12	c.379 others(31): Show c.3795+9908_3795+9909insTGTGCGCAGCGC	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28		chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115561680	T T	TGTGTGTG others(5): Show TGTGTGTGTGTGG	intron_variant intron_variant	MODIFIER	HG02723.hp1 NA18957.hp1 HG02723.hp1 NA18957.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0008 a0001c0002 a0002c0008	a0001c0002t0001 a0002c0008t0011 a0001c0002t0001 a0002c0008t0011	a0001c0002t0001g0045 a0002c0008t0011g0073 a0001c0002t0001g0045 a0002c0008t0011g0073	2	128	0.0156	12	c.379 others(33): Show c.3795+12153_3795+12154insTGGGTGTGTGTG	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115561704	G G	GGGGTGTG others(5): Show GGGGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01071.hp2	a0002 a0002	a0002c0014 a0002c0014	a0002c0014t0009 a0002c0014t0009	a0002c0014t0009g0072 a0002c0014t0009g0072	1	128	0.0078	12	c.379 others(33): Show c.3795+12169_3795+12170insGGTGTGTGTGTG	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115561704	G G	GGTGTGTG others(5): Show GGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02145.hp2 HG02280.hp2 others(5): Show HG01891.hp2 HG02145.hp2 HG02280.hp2 HG02559.hp1 HG02572.hp1 HG02970.hp1 NA18522.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0011 others(5): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0011 a0001c0001t0013 a0001c0001t0023 a0001c0001t0025 a0001c0001t0035 a0001c0001t0048	a0001c0001t0002g0015 a0001c0001t0008g0023 a0001c0001t0011g0112 others(5): Show a0001c0001t0002g0015 a0001c0001t0008g0023 a0001c0001t0011g0112 a0001c0001t0013g0019 a0001c0001t0023g0022 a0001c0001t0025g0021 a0001c0001t0035g0118 a0001c0001t0048g0107	8	128	0.0625	12	c.379 others(33): Show c.3795+12177_3795+12188dupGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115561706	T T	TGTGTGTG others(5): Show TGTGTGTGTGTGG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0119 a0001c0001t0011g0119	1	128	0.0078	12	c.379 others(33): Show c.3795+12181_3795+12182insGGTGTGTGTGTG	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115577610	T T	TTGTGTGT others(5): Show TTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02895.hp2 NA19011.hp1 HG02615.hp1 HG02895.hp2 NA19011.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0004 a0001c0002t0001 a0001c0002t0004	a0001c0002t0001g0050 a0001c0002t0001g0051 a0001c0002t0004g0067 a0001c0002t0001g0050 a0001c0002t0001g0051 a0001c0002t0004g0067	3	128	0.0234	12	c.379 others(33): Show c.3795+28106_3795+28117dupGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115598348	A A	AATTTATT others(5): Show AATTTATTTATTT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02572.hp1 HG02717.hp1 others(2): Show HG02258.hp2 HG02572.hp1 HG02717.hp1 HG02723.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0006 others(2): Show a0001c0001 a0001c0003 a0001c0006 a0001c0007 a0002c0008	a0001c0001t0048 a0001c0003t0045 a0001c0006t0033 others(2): Show a0001c0001t0048 a0001c0003t0045 a0001c0006t0033 a0001c0007t0027 a0002c0008t0011	a0001c0001t0048g0107 a0001c0003t0045g0090 a0001c0006t0033g0035 others(2): Show a0001c0001t0048g0107 a0001c0003t0045g0090 a0001c0006t0033g0035 a0001c0007t0027g0006 a0002c0008t0011g0073	5	128	0.0391	12	c.379 others(33): Show c.3795+48813_3795+48814insTTTATTTATTTA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115621254	A A	AATATATA others(5): Show AATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0023 a0001c0001t0008g0023	1	128	0.0078	12	c.379 others(33): Show c.3795+71730_3795+71741dupTATATATATATA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115621276	T T	TATAGAGA others(5): Show TATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0082 a0001c0001t0008g0082	1	128	0.0078	12	c.379 others(33): Show c.3795+71741_3795+71742insTAGAGAGAGAGA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115621276	T T	TATATAGA others(5): Show TATATAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG04115.hp1 HG01071.hp2 HG04115.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0014 a0001c0001 a0002c0014	a0001c0001t0003 a0002c0014t0009 a0001c0001t0003 a0002c0014t0009	a0001c0001t0003g0104 a0002c0014t0009g0072 a0001c0001t0003g0104 a0002c0014t0009g0072	2	128	0.0156	12	c.379 others(33): Show c.3795+71741_3795+71742insTATAGAGAGAGA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115621276	T T	TATATATA others(5): Show TATATATAGAGAG	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0021 a0001c0001t0025g0021	1	128	0.0078	12	c.379 others(33): Show c.3795+71741_3795+71742insTATATAGAGAGA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115621276	T T	TATATATA others(5): Show TATATATATAGAG	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0098	1	128	0.0078	12	c.379 others(33): Show c.3795+71741_3795+71742insTATATATAGAGA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115637596	T T	TTTATCAC others(5): Show TTTATCACTATTA	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0109 a0001c0001t0006g0109	1	128	0.0078	12	c.379 others(33): Show c.3795+88064_3795+88065insCACTATTATTAT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115637603	C C	CTATTATT others(5): Show CTATTATTATTAT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01891.hp2 HG02145.hp1 others(4): Show HG01123.hp1 HG01891.hp2 HG02145.hp1 HG02630.hp2 HG03139.hp2 NA19070.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0009 a0001c0001t0023 others(3): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0023 a0001c0002t0001 a0001c0002t0006 a0001c0005t0021	a0001c0001t0001g0036 a0001c0001t0001g0070 a0001c0001t0009g0122 others(4): Show a0001c0001t0001g0036 a0001c0001t0001g0070 a0001c0001t0009g0122 a0001c0001t0023g0022 a0001c0002t0001g0103 a0001c0002t0006g0086 a0001c0005t0021g0007	7	128	0.0547	12	c.379 others(33): Show c.3795+88093_3795+88104dupATTATTATTATT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115646036	T T	TACACACA others(5): Show TACACACACACAC	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02132.hp2 HG02135.hp2 others(6): Show HG01071.hp2 HG02132.hp2 HG02135.hp2 HG02300.hp1 HG02523.hp1 HG03195.hp1 HG03239.hp1 NA18995.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0014 a0001c0001 a0002c0014	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0009 a0001c0001t0014 a0001c0001t0029 a0002c0014t0009	a0001c0001t0001g0101 a0001c0001t0001g0124 a0001c0001t0001g0125 others(6): Show a0001c0001t0001g0101 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0003g0092 a0001c0001t0006g0100 a0001c0001t0009g0122 a0001c0001t0014g0001 a0001c0001t0029g0075 a0002c0014t0009g0072	9	128	0.0703	12	c.379 others(33): Show c.3796-81190_3796-81179dupCACACACACACA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115682669	T T	TATGATGA others(5): Show TATGATGATGATG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0033 a0001c0006t0033	a0001c0006t0033g0035 a0001c0006t0033g0035	1	128	0.0078	12	c.379 others(33): Show c.3796-44558_3796-44547dupGATGATGATGAT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115682669	T T	TATGGTGA others(5): Show TATGGTGATGATG	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0117 a0001c0001t0036g0117	1	128	0.0078	12	c.379 others(33): Show c.3796-44576_3796-44575insGTGATGATGATG	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115713675	T T	TTCTATCT others(5): Show TTCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01109.hp1 HG02135.hp1 others(3): Show HG01071.hp2 HG01109.hp1 HG02135.hp1 HG02622.hp2 HG03471.hp2 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0002c0008 others(1): Show a0001c0001 a0001c0006 a0002c0008 a0002c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0001c0006t0033 a0002c0008t0044 a0002c0014t0009	a0001c0001t0001g0068 a0001c0001t0002g0113 a0001c0001t0010g0033 others(3): Show a0001c0001t0001g0068 a0001c0001t0002g0113 a0001c0001t0010g0033 a0001c0006t0033g0035 a0002c0008t0044g0063 a0002c0014t0009g0072	6	128	0.0469	12	c.379 others(33): Show c.3796-13554_3796-13543dupTATCTATCTATC	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115713705	C C	CTATCATC others(5): Show CTATCATCTATCT	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0046 a0001c0002t0005g0046	1	128	0.0078	12	c.379 others(33): Show c.3796-13543_3796-13542insTATCATCTATCT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28		chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115713705	C C	CTATCTAT others(5): Show CTATCTATCATCT	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02523.hp2 NA18959.hp2 HG01952.hp2 HG02523.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0120 a0001c0001t0002g0077 a0001c0002t0001g0052 a0001c0001t0001g0120 a0001c0001t0002g0077 a0001c0002t0001g0052	3	128	0.0234	12	c.379 others(33): Show c.3796-13543_3796-13542insTATCTATCATCT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28		chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115723534	G G	GTATTTAT others(5): Show GTATTTATTTATT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02280.hp2 HG02896.hp1 others(6): Show HG00639.hp2 HG02280.hp2 HG02896.hp1 HG02897.hp2 HG03139.hp2 HG03834.hp1 HG04115.hp2 NA19030.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0009 a0001c0001 a0001c0005 a0001c0009	a0001c0001t0001 a0001c0001t0008 a0001c0005t0007 others(3): Show a0001c0001t0001 a0001c0001t0008 a0001c0005t0007 a0001c0005t0021 a0001c0005t0032 a0001c0009t0005	a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0008g0023 others(6): Show a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0008g0023 a0001c0005t0007g0002 a0001c0005t0007g0004 a0001c0005t0007g0009 a0001c0005t0021g0007 a0001c0005t0032g0005 a0001c0009t0005g0059	9	128	0.0703	12	c.379 others(31): Show c.3796-3696_3796-3685dupATTTATTTATTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115729495	T T	TTGTGTGT others(5): Show TTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01952.hp1 HG00639.hp2 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0032 a0001c0001t0001 a0001c0005t0032	a0001c0001t0001g0065 a0001c0005t0032g0005 a0001c0001t0001g0065 a0001c0005t0032g0005	2	128	0.0156	12	c.390 others(31): Show c.3903+2170_3903+2181dupGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115738126	A A	ATTTTTTT others(5): Show ATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0020 a0001c0001t0019g0020	1	128	0.0078	12	c.390 others(33): Show c.3903+10790_3903+10801dupTTTTTTTTTTTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115738154	T T	TTTTTTTT others(5): Show TTTTTTTTTTTTC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02615.hp1 HG03209.hp2 HG02258.hp1 HG02615.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0037 a0001c0001t0001 a0001c0002t0001 a0001c0003t0037	a0001c0001t0001g0085 a0001c0002t0001g0051 a0001c0003t0037g0121 a0001c0001t0001g0085 a0001c0002t0001g0051 a0001c0003t0037g0121	3	128	0.0234	12	c.390 others(33): Show c.3903+10801_3903+10802insTTTTTTTTTCTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115740494	C C	CCTATCTA others(5): Show CCTATCTATCTAT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02630.hp1 HG02723.hp2 others(1): Show HG02572.hp2 HG02630.hp1 HG02723.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0007 others(1): Show a0001c0001 a0001c0006 a0001c0007 a0001c0015	a0001c0001t0007 a0001c0006t0013 a0001c0007t0030 others(1): Show a0001c0001t0007 a0001c0006t0013 a0001c0007t0030 a0001c0015t0034	a0001c0001t0007g0027 a0001c0006t0013g0029 a0001c0007t0030g0008 others(1): Show a0001c0001t0007g0027 a0001c0006t0013g0029 a0001c0007t0030g0008 a0001c0015t0034g0110	4	128	0.0313	12	c.390 others(33): Show c.3903+13148_3903+13159dupCTATCTATCTAT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115772593	C C	CTGTGTGT others(5): Show CTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG03209.hp2 HG06807.hp1 others(1): Show HG02015.hp1 HG03209.hp2 HG06807.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0085 a0001c0001t0001g0088 others(1): Show a0001c0001t0001g0069 a0001c0001t0001g0085 a0001c0001t0001g0088 a0001c0001t0001g0096	4	128	0.0313	12	c.390 others(33): Show c.3903+45241_3903+45242insGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115772597	C C	CTGTGTGT others(5): Show CTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp2 HG00738.hp2 others(7): Show HG00639.hp1 HG00735.hp2 HG00738.hp2 HG01071.hp1 HG01891.hp1 HG02280.hp2 HG02622.hp2 HG02896.hp2 HG03139.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0012	a0001c0001t0002 a0001c0001t0006 a0001c0001t0008 others(5): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0008 a0001c0001t0020 a0001c0001t0042 a0001c0002t0005 a0001c0005t0021 a0001c0012t0001	a0001c0001t0002g0111 a0001c0001t0002g0113 a0001c0001t0002g0114 others(7): Show a0001c0001t0002g0111 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0006g0109 a0001c0001t0008g0023 a0001c0001t0020g0115 a0001c0001t0042g0095 a0001c0002t0005g0044 a0001c0005t0021g0007 a0001c0012t0001g0071	10	128	0.0781	12	c.390 others(33): Show c.3903+45266_3903+45277dupGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115815415	A A	ATGTGTGT others(5): Show ATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0027 a0001c0007t0027	a0001c0007t0027g0006 a0001c0007t0027g0006	1	128	0.0078	12	c.390 others(33): Show c.3904-32436_3904-32425dupGTGTGTGTGTGT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	27/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115856428	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01258.hp1 HG02015.hp2 others(7): Show HG00735.hp2 HG01258.hp1 HG02015.hp2 HG02280.hp1 HG02572.hp1 HG02622.hp2 HG03139.hp2 NA19003.hp2 NA19011.hp1 NA19070.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0004	a0001c0001t0002 a0001c0001t0048 a0001c0002t0004 others(3): Show a0001c0001t0002 a0001c0001t0048 a0001c0002t0004 a0001c0005t0021 a0001c0006t0009 a0002c0004t0007	a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0048g0107 others(7): Show a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0048g0107 a0001c0002t0004g0039 a0001c0002t0004g0040 a0001c0002t0004g0067 a0001c0002t0004g0127 a0001c0005t0021g0007 a0001c0006t0009g0038 a0002c0004t0007g0011	10	128	0.0781	12	c.401 others(31): Show c.4018+8448_4018+8459dupAAAAAAAAAAAA	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	28/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115868822	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02132.hp1 HG02258.hp2 others(6): Show HG01081.hp2 HG02132.hp1 HG02258.hp2 HG02615.hp2 HG02818.hp2 HG03195.hp2 HG03239.hp1 NA18957.hp1 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0016 a0001c0001t0043 a0001c0002t0001 a0001c0003t0045	a0001c0001t0001g0124 a0001c0001t0002g0077 a0001c0001t0002g0080 others(6): Show a0001c0001t0001g0124 a0001c0001t0002g0077 a0001c0001t0002g0080 a0001c0001t0003g0061 a0001c0001t0003g0093 a0001c0001t0016g0031 a0001c0001t0043g0094 a0001c0002t0001g0045 a0001c0003t0045g0090	9	128	0.0703	12	c.401 others(33): Show c.4018+20845_4018+20856dupTTTTTTTTTTTT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	28/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115871467	C C	CTATATAT others(5): Show CTATATATATATA	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0023 a0001c0001t0008g0023	1	128	0.0078	12	c.401 others(33): Show c.4018+23477_4018+23478insATATATATATAT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	28/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRNL1_chr10_115088365_115953999	115871469	T T	TTATATAT others(5): Show TTATATATATATA	intron_variant intron_variant	MODIFIER	HG03471.hp1 NA19030.hp2 HG03471.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0026 a0001c0005t0007 a0001c0001t0026 a0001c0005t0007	a0001c0001t0026g0010 a0001c0005t0007g0002 a0001c0001t0026g0010 a0001c0005t0007g0002	2	128	0.0156	12	c.401 others(33): Show c.4018+23479_4018+23480insATATATATATAT	ATRNL1	ENSG00000107518.18	transcript	ENST00000355044.8	protein_coding	28/28	INFO_REALIGN_3_PRIME	chr10	TogoVar
ATRN_chr20_3466018_3656118	3492168	A A	AGTGTGTG others(5): Show AGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp2 HG02976.hp1 others(1): Show HG02145.hp1 HG02145.hp2 HG02976.hp1 HG04228.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0004c0011 a0001c0001 a0001c0003 a0004c0011	a0001c0001t0002 a0001c0001t0012 a0001c0003t0002 others(1): Show a0001c0001t0002 a0001c0001t0012 a0001c0003t0002 a0004c0011t0004	a0001c0001t0002g0002 a0001c0001t0012g0208 a0001c0003t0002g0214 others(1): Show a0001c0001t0002g0002 a0001c0001t0012g0208 a0001c0003t0002g0214 a0004c0011t0004g0165	4	220	0.0182	12	c.410 others(31): Show c.410+20676_410+20687dupGTGTGTGTGTGT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3506057	G G	GACACATA others(5): Show GACACATACACAT	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0017 a0001c0013t0017	a0001c0013t0017g0149 a0001c0013t0017g0149	1	220	0.0046	12	c.411 others(31): Show c.411-29178_411-29167dupTACACATACACA	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3512107	A A	ATATATAT others(5): Show ATATATATATATT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0011 a0002c0004t0011	a0002c0004t0011g0152 a0002c0004t0011g0152	1	220	0.0046	12	c.411 others(31): Show c.411-23145_411-23144insATATATATATTT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3512107	A A	ATATATAT others(5): Show ATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0011 a0002c0004t0011	a0002c0004t0011g0150 a0002c0004t0011g0150	1	220	0.0046	12	c.411 others(31): Show c.411-23145_411-23144insATATATTTTTTT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3519006	T T	TAAAAAAA others(5): Show TAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG03195.hp1 HG02647.hp2 HG03195.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0010 a0001c0003t0035 a0001c0003t0010 a0001c0003t0035	a0001c0003t0010g0206 a0001c0003t0035g0205 a0001c0003t0010g0206 a0001c0003t0035g0205	2	220	0.0091	12	c.411 others(31): Show c.411-16244_411-16233dupAAAAAAAAAAAA	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3519006	T T	TATAAAAA others(5): Show TATAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01515.hp1 HG01517.hp1 HG01106.hp2 HG01515.hp1 HG01517.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0007 a0001c0005t0007	a0001c0005t0007g0183 a0001c0005t0007g0184 a0001c0005t0007g0192 a0001c0005t0007g0183 a0001c0005t0007g0184 a0001c0005t0007g0192	3	220	0.0136	12	c.411 others(31): Show c.411-16246_411-16245insTAAAAAAAAAAA	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	1/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3554305	T T	TTTTATTT others(5): Show TTTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01070.hp2 HG01109.hp2 others(14): Show HG00438.hp1 HG01070.hp2 HG01109.hp2 HG01169.hp1 HG01175.hp2 HG01943.hp2 HG01952.hp2 HG01981.hp1 HG02015.hp1 HG02055.hp2 HG02300.hp1 HG03225.hp1 NA18957.hp2 NA19063.hp1 NA19063.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0014 others(1): Show a0001c0001 a0001c0002 a0001c0014 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0002t0006 a0001c0014t0002 a0002c0004t0004	a0001c0001t0001g0019 a0001c0001t0002g0105 a0001c0001t0002g0106 others(14): Show a0001c0001t0001g0019 a0001c0001t0002g0105 a0001c0001t0002g0106 a0001c0001t0002g0112 a0001c0001t0002g0116 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0002g0144 a0001c0001t0002g0148 a0001c0001t0005g0036 a0001c0001t0005g0061 a0001c0001t0009g0103 a0001c0001t0010g0011 a0001c0002t0006g0018 a0001c0002t0006g0051 a0001c0014t0002g0170 a0002c0004t0004g0162	17	220	0.0773	12	c.111 others(31): Show c.1112+5003_1112+5014dupATTTATTTATTT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	6/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3576679	A A	ATCTGTCT others(5): Show ATCTGTCTGTCTG	intron_variant intron_variant	MODIFIER	HG02698.hp1 NA18953.hp2 NA19030.hp1 HG02698.hp1 NA18953.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0005 a0001c0002t0006 a0001c0001t0002 a0001c0001t0005 a0001c0002t0006	a0001c0001t0002g0109 a0001c0001t0005g0121 a0001c0002t0006g0073 a0001c0001t0002g0109 a0001c0001t0005g0121 a0001c0002t0006g0073	3	220	0.0136	12	c.221 others(29): Show c.2215-172_2215-161dupGTCTGTCTGTCT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	13/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3576695	G G	GTCTATCT others(5): Show GTCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp1 HG00738.hp1 others(6): Show HG00639.hp1 HG00735.hp1 HG00738.hp1 HG01106.hp1 HG01358.hp2 HG01943.hp1 HG02055.hp1 HG02886.hp1 HG03225.hp2	a0001 a0003 a0010 a0001 a0003 a0010	a0001c0003 a0001c0006 a0003c0008 others(2): Show a0001c0003 a0001c0006 a0003c0008 a0003c0017 a0010c0023	a0001c0003t0005 a0001c0003t0007 a0001c0006t0004 others(5): Show a0001c0003t0005 a0001c0003t0007 a0001c0006t0004 a0001c0006t0020 a0003c0008t0005 a0003c0008t0029 a0003c0017t0021 a0010c0023t0007	a0001c0003t0005g0190 a0001c0003t0007g0179 a0001c0006t0004g0177 others(6): Show a0001c0003t0005g0190 a0001c0003t0007g0179 a0001c0006t0004g0177 a0001c0006t0004g0186 a0001c0006t0020g0180 a0003c0008t0005g0197 a0003c0008t0029g0196 a0003c0017t0021g0199 a0010c0023t0007g0182	9	220	0.0409	12	c.221 others(29): Show c.2215-136_2215-125dupATCTATCTATCT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	13/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3576695	G G	GTCTGTCT others(5): Show GTCTGTCTGTCTA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00438.hp2 HG00621.hp1 others(29): Show HG00323.hp1 HG00438.hp2 HG00621.hp1 HG00673.hp1 HG00733.hp1 HG01243.hp1 HG01257.hp2 HG02055.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp1 HG02976.hp2 HG03130.hp2 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03516.hp2 HG03704.hp2 NA18906.hp1 NA18959.hp1 NA18966.hp1 NA18985.hp1 NA19030.hp2 NA19086.hp1 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0012 a0001 a0012	a0001c0001 a0001c0002 a0001c0007 others(3): Show a0001c0001 a0001c0002 a0001c0007 a0001c0013 a0001c0014 a0012c0029	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0023 a0001c0001t0027 a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 a0001c0002t0008 a0001c0002t0017 a0001c0002t0020 a0001c0007t0006 a0001c0013t0017 a0001c0014t0002 a0012c0029t0002	a0001c0001t0001g0044 a0001c0001t0001g0071 a0001c0001t0001g0140 others(29): Show a0001c0001t0001g0044 a0001c0001t0001g0071 a0001c0001t0001g0140 a0001c0001t0002g0110 a0001c0001t0002g0148 a0001c0001t0009g0100 a0001c0001t0009g0101 a0001c0001t0010g0096 a0001c0001t0010g0145 a0001c0001t0013g0107 a0001c0001t0023g0087 a0001c0001t0027g0095 a0001c0002t0003g0023 a0001c0002t0003g0028 a0001c0002t0003g0034 a0001c0002t0003g0088 a0001c0002t0003g0089 a0001c0002t0003g0135 a0001c0002t0004g0030 a0001c0002t0004g0091 a0001c0002t0004g0092 a0001c0002t0006g0052 a0001c0002t0006g0053 a0001c0002t0008g0035 a0001c0002t0008g0131 a0001c0002t0008g0132 a0001c0002t0017g0079 a0001c0002t0020g0098 a0001c0007t0006g0201 a0001c0013t0017g0149 a0001c0014t0002g0170 a0012c0029t0002g0122	32	220	0.1455	12	c.221 others(29): Show c.2215-161_2215-160insGTCTGTCTATCT	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	13/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3597071	T T	TATATATA others(5): Show TATATATATATAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0084 a0001c0002t0003g0084	1	220	0.0046	12	c.346 others(29): Show c.3469+645_3469+646insTATATATAAATA	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	21/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRN_chr20_3466018_3656118	3635363	T T	TAATAAAT others(5): Show TAATAAATAAATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(17): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00323.hp2 HG00639.hp1 HG00738.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp2 HG01106.hp1 HG01169.hp1 HG01517.hp2 HG02015.hp1 HG02257.hp1 HG02602.hp1 HG02698.hp1 HG02738.hp2 HG04228.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0001c0003 a0003c0008 others(1): Show a0001c0001 a0001c0003 a0003c0008 a0006c0010	a0001c0001t0005 a0001c0001t0028 a0001c0003t0005 others(4): Show a0001c0001t0005 a0001c0001t0028 a0001c0003t0005 a0003c0008t0005 a0003c0008t0029 a0006c0010t0005 a0006c0010t0018	a0001c0001t0005g0015 a0001c0001t0005g0036 a0001c0001t0005g0056 others(17): Show a0001c0001t0005g0015 a0001c0001t0005g0036 a0001c0001t0005g0056 a0001c0001t0005g0061 a0001c0001t0005g0064 a0001c0001t0005g0068 a0001c0001t0005g0080 a0001c0001t0005g0120 a0001c0001t0005g0121 a0001c0001t0005g0138 a0001c0001t0005g0175 a0001c0001t0028g0017 a0001c0003t0005g0178 a0001c0003t0005g0190 a0003c0008t0005g0197 a0003c0008t0005g0198 a0003c0008t0029g0196 a0006c0010t0005g0127 a0006c0010t0018g0126 a0006c0010t0018g0128	20	220	0.0909	12	c.394 others(30): Show c.3942+995_3942+1006dupAATAAATAAATA	ATRN	ENSG00000088812.18	transcript	ENST00000262919.10	protein_coding	26/28	INFO_REALIGN_3_PRIME	chr20	TogoVar
ATRX_chrX_77499880_77791216	77571022	A A	ACCTATCA others(5): Show ACCTATCAGAACT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01167.hp1 HG01975.hp2 others(20): Show HG00558.hp1 HG01167.hp1 HG01975.hp2 HG02015.hp1 HG02165.hp1 HG02257.hp2 HG02451.hp2 HG02615.hp1 HG02717.hp1 HG02809.hp1 HG03540.hp2 HG04204.hp1 NA18906.hp2 NA18948.hp1 NA18962.hp1 NA18965.hp1 NA18970.hp1 NA18973.hp1 NA19001.hp1 NA19074.hp1 NA19080.hp2 NA19084.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0010 a0002c0002 a0001c0001 a0001c0010 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0017 a0001c0001t0018 a0001c0010t0006 a0002c0002t0001	a0001c0001t0001g0195 a0001c0001t0002g0158 a0001c0001t0002g0178 others(20): Show a0001c0001t0001g0195 a0001c0001t0002g0158 a0001c0001t0002g0178 a0001c0001t0003g0115 a0001c0001t0003g0137 a0001c0001t0003g0138 a0001c0001t0003g0196 a0001c0001t0004g0122 a0001c0001t0004g0185 a0001c0001t0004g0186 a0001c0001t0004g0187 a0001c0001t0004g0188 a0001c0001t0004g0190 a0001c0001t0004g0191 a0001c0001t0004g0192 a0001c0001t0004g0194 a0001c0001t0004g0205 a0001c0001t0004g0218 a0001c0001t0006g0179 a0001c0001t0017g0183 a0001c0001t0018g0193 a0001c0010t0006g0197 a0002c0002t0001g0054	23	218	0.1055	12	c.632 others(31): Show c.6326+3216_6326+3227dupAGTTCTGATAGG	ATRX	ENSG00000085224.23	transcript	ENST00000373344.11	protein_coding	28/34		chrX	TogoVar
ATRX_chrX_77499880_77791216	77585583	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0038 a0002c0002t0001g0038	1	218	0.0046	12	c.621 others(31): Show c.6217+4239_6217+4250dupTTTTTTTTTTTT	ATRX	ENSG00000085224.23	transcript	ENST00000373344.11	protein_coding	27/34		chrX	TogoVar

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