JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
HIP1_chr7_75528298_75743941	75577332	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG03486.hp1 HG03516.hp1 HG01109.hp2 HG03486.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0003 a0001c0001t0027 a0001c0009t0005 a0001c0001t0003 a0001c0001t0027 a0001c0009t0005	a0001c0001t0003g0026 a0001c0001t0027g0138 a0001c0009t0005g0143 a0001c0001t0003g0026 a0001c0001t0027g0138 a0001c0009t0005g0143	3	254	0.0118	13	c.605 others(30): Show c.605-3444_605-3432dupTTTTTTTTTTTTT	HIP1	ENSG00000127946.17	transcript	ENST00000336926.11	protein_coding	7/30			chr7	TogoVar
HIP1_chr7_75528298_75743941	75595248	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0044 a0001c0001t0004g0044	1	254	0.0039	13	c.185 others(30): Show c.185-2735_185-2734insAGAAAGAAAGAAA	HIP1	ENSG00000127946.17	transcript	ENST00000336926.11	protein_coding	2/30			chr7	TogoVar
HIP1_chr7_75528298_75743941	75650453	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02055.hp1 HG02129.hp1 others(3): Show HG01891.hp2 HG02055.hp1 HG02129.hp1 HG03130.hp1 NA18946.hp2 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0001 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0106 a0001c0001t0001g0117 a0001c0001t0001g0130 others(3): Show a0001c0001t0001g0106 a0001c0001t0001g0117 a0001c0001t0001g0130 a0001c0001t0003g0022 a0001c0001t0003g0128 a0001c0001t0004g0021	6	254	0.0236	13	c.121 others(32): Show c.121-51219_121-51207dupAAAAAAAAAAAAA	HIP1	ENSG00000127946.17	transcript	ENST00000336926.11	protein_coding	1/30			chr7	TogoVar
HIP1_chr7_75528298_75743941	75715774	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA19030.hp1 HG02630.hp2 NA19030.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0021 a0001c0001 a0005c0021	a0001c0001t0003 a0005c0021t0005 a0001c0001t0003 a0005c0021t0005	a0001c0001t0003g0099 a0005c0021t0005g0088 a0001c0001t0003g0099 a0005c0021t0005g0088	2	254	0.0079	13	c.120 others(32): Show c.120+23014_120+23026dupTTTTTTTTTTTTT	HIP1	ENSG00000127946.17	transcript	ENST00000336926.11	protein_coding	1/30			chr7	TogoVar
HIPK1_chr1_113924324_113982869	113938927	A A	AAATATAC others(6): Show AAATATACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0329 a0001c0002t0001g0329	1	382	0.0026	13	c.-2- others(28): Show c.-2-1454_-2-1453insATATACACACACA	HIPK1	ENSG00000163349.22	transcript	ENST00000426820.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
HIPK1_chr1_113924324_113982869	113938927	A A	ATATACAC others(6): Show ATATACACACACAC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00597.hp2 HG00673.hp2 others(22): Show HG00140.hp2 HG00597.hp2 HG00673.hp2 HG00735.hp1 HG00738.hp1 HG01256.hp1 HG01361.hp1 HG01515.hp2 HG01517.hp2 HG01928.hp1 HG03704.hp1 HG04115.hp1 HG04115.hp2 NA18906.hp1 NA18949.hp2 NA18952.hp1 NA18961.hp2 NA18971.hp1 NA18981.hp1 NA18995.hp2 NA19054.hp1 NA19058.hp2 NA19064.hp1 NA19074.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0004 a0001c0001t0001 a0001c0002t0004	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0086 others(20): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0086 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0135 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0187 a0001c0001t0001g0190 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0238 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0002t0004g0136 a0001c0002t0004g0137	25	382	0.0655	13	c.-2- others(28): Show c.-2-1455_-2-1454insTATACACACACAC	HIPK1	ENSG00000163349.22	transcript	ENST00000426820.7	protein_coding	1/15			chr1	TogoVar
HIPK2_chr7_139556570_139782998	139634674	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02486.hp2 HG02622.hp2 others(4): Show HG00735.hp1 HG02486.hp2 HG02622.hp2 HG02886.hp1 HG02895.hp1 HG02922.hp2 HG02976.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0009 a0001c0001 a0001c0003 a0002c0009	a0001c0001t0007 a0001c0001t0016 a0001c0001t0062 others(4): Show a0001c0001t0007 a0001c0001t0016 a0001c0001t0062 a0001c0001t0097 a0001c0003t0050 a0001c0003t0053 a0002c0009t0036	a0001c0001t0007g0132 a0001c0001t0016g0038 a0001c0001t0062g0035 others(4): Show a0001c0001t0007g0132 a0001c0001t0016g0038 a0001c0001t0062g0035 a0001c0001t0097g0025 a0001c0003t0050g0039 a0001c0003t0053g0141 a0002c0009t0036g0121	7	154	0.0455	13	c.110 others(32): Show c.1104-2962_1104-2950dupAAAAAAAAAAAAA	HIPK2	ENSG00000064393.16	transcript	ENST00000406875.8	protein_coding	2/14			chr7	TogoVar
HIPK3_chr11_33252381_33362023	33302339	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	342	0.0029	13	c.109 others(34): Show c.1097+14830_1097+14831insTTTTTTTTTTTTT	HIPK3	ENSG00000110422.12	transcript	ENST00000303296.9	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
HIPK3_chr11_33252381_33362023	33310262	G G	GTCTATCT others(6): Show GTCTATCTTATCTA	intron_variant intron_variant	MODIFIER	HG01361.hp2 NA18960.hp1 NA19068.hp1 HG01361.hp2 NA18960.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0008 a0001c0001t0003g0069 a0001c0001t0003g0072 a0001c0001t0003g0008 a0001c0001t0003g0069 a0001c0001t0003g0072	3	342	0.0088	13	c.109 others(34): Show c.1098-18245_1098-18244insATCTTATCTATCT	HIPK3	ENSG00000110422.12	transcript	ENST00000303296.9	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
HIPK3_chr11_33252381_33362023	33310266	G G	GTCTATCT others(6): Show GTCTATCTTATCTA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02148.hp2 HG02895.hp1 others(2): Show HG02145.hp2 HG02148.hp2 HG02895.hp1 HG02897.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0127 a0001c0001t0001g0140 a0001c0001t0003g0076 others(2): Show a0001c0001t0001g0127 a0001c0001t0001g0140 a0001c0001t0003g0076 a0001c0001t0003g0079 a0001c0001t0003g0268	5	342	0.0146	13	c.109 others(34): Show c.1098-18241_1098-18240insATCTTATCTATCT	HIPK3	ENSG00000110422.12	transcript	ENST00000303296.9	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
HIPK3_chr11_33252381_33362023	33310270	G G	GTCTATCT others(6): Show GTCTATCTTATCTA	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02129.hp2 HG02809.hp1 others(8): Show HG02080.hp1 HG02129.hp2 HG02809.hp1 HG03139.hp2 HG03540.hp2 NA18946.hp1 NA18957.hp1 NA18983.hp2 NA18999.hp2 NA19078.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0135 others(8): Show a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0135 a0001c0001t0001g0142 a0001c0001t0001g0147 a0001c0001t0001g0169 a0001c0001t0001g0172 a0001c0001t0001g0174 a0001c0001t0001g0179 a0001c0001t0001g0201 a0001c0001t0004g0112	11	342	0.0322	13	c.109 others(34): Show c.1098-18237_1098-18236insATCTTATCTATCT	HIPK3	ENSG00000110422.12	transcript	ENST00000303296.9	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
HIRA_chr22_19325698_19436733	19390601	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01516.hp2 HG02135.hp2 others(2): Show HG00140.hp1 HG01516.hp2 HG02135.hp2 HG02738.hp1 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0235 others(2): Show a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0267	5	364	0.0137	13	c.936 others(30): Show c.936+1487_936+1499dupTTTTTTTTTTTTT	HIRA	ENSG00000100084.14	transcript	ENST00000263208.5	protein_coding	9/24			chr22	TogoVar
HIVEP1_chr6_12007312_12169999	12141691	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0279 a0004c0004t0001g0279	1	344	0.0029	13	c.648 others(32): Show c.6487+5816_6487+5828dupAAAAAAAAAAAAA	HIVEP1	ENSG00000095951.17	transcript	ENST00000379388.7	protein_coding	7/8		INFO_REALIGN_3_PRIME	chr6	TogoVar
HIVEP1_chr6_12007312_12169999	12168291	A A	ATATATAC others(6): Show ATATATACATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp1 NA20300.hp1 HG03098.hp1 NA20300.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0328 a0001c0005t0001g0329 a0001c0005t0001g0328 a0001c0005t0001g0329	2	344	0.0058	13	c.38 others(24): Show c.3830_*3831insTATATACATATAT	HIVEP1	ENSG00000095951.17	transcript	ENST00000379388.7	protein_coding		3293		chr6	TogoVar
HIVEP2_chr6_142746469_142950176	142793656	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTTT	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0020 a0001c0002t0002g0020	1	288	0.0035	13	c.-52 others(34): Show c.-527-10042_-527-10041insAAAAAGAAAGAAA	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	2/9			chr6	TogoVar
HIVEP2_chr6_142746469_142950176	142793659	T T	TCTTTCTT others(6): Show TCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01074.hp1 HG01081.hp2 others(29): Show HG00639.hp2 HG01074.hp1 HG01081.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01496.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp2 HG02004.hp1 HG02004.hp2 HG02132.hp1 HG02698.hp1 HG02809.hp2 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG03130.hp1 HG03195.hp1 HG03491.hp2 HG03516.hp2 HG03579.hp1 HG03942.hp2 NA18906.hp2 NA18941.hp1 NA18957.hp1 NA19000.hp2 NA19011.hp2 NA19074.hp2 NA19078.hp2 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0014 a0001c0016 a0001c0022 a0001c0023 a0001c0024	a0001c0001t0001 a0001c0002t0002 a0001c0003t0002 others(9): Show a0001c0001t0001 a0001c0002t0002 a0001c0003t0002 a0001c0004t0001 a0001c0005t0005 a0001c0006t0001 a0001c0007t0001 a0001c0014t0001 a0001c0016t0001 a0001c0022t0001 a0001c0023t0012 a0001c0024t0003	a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0047 others(29): Show a0001c0001t0001g0039 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0103 a0001c0001t0001g0115 a0001c0001t0001g0143 a0001c0001t0001g0174 a0001c0001t0001g0192 a0001c0001t0001g0204 a0001c0001t0001g0223 a0001c0001t0001g0240 a0001c0001t0001g0244 a0001c0002t0002g0027 a0001c0002t0002g0137 a0001c0002t0002g0153 a0001c0002t0002g0256 a0001c0002t0002g0275 a0001c0003t0002g0105 a0001c0004t0001g0144 a0001c0005t0005g0004 a0001c0006t0001g0003 a0001c0006t0001g0008 a0001c0007t0001g0247 a0001c0014t0001g0201 a0001c0014t0001g0208 a0001c0014t0001g0209 a0001c0016t0001g0074 a0001c0022t0001g0210 a0001c0023t0012g0112 a0001c0024t0003g0285	32	288	0.1111	13	c.-52 others(34): Show c.-527-10045_-527-10044insGAAAGAAAGAAAG	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	2/9			chr6	TogoVar
HIVEP2_chr6_142746469_142950176	142803597	A A	ACACACAC others(6): Show ACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01169.hp2 HG01169.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0009t0002 a0001c0001t0001 a0001c0009t0002	a0001c0001t0001g0075 a0001c0009t0002g0165 a0001c0001t0001g0075 a0001c0009t0002g0165	2	288	0.0069	13	c.-52 others(34): Show c.-527-19983_-527-19982insGTGTGTGTGTGTG	HIVEP2	ENSG00000010818.11	transcript	ENST00000367603.8	protein_coding	2/9			chr6	TogoVar
HIVEP3_chr1_41501365_41923922	41638256	G G	GAGAAAGA others(6): Show GAGAAAGAAAAGAA	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA18942.hp2 NA18950.hp2 HG00408.hp1 NA18942.hp2 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0068 a0001c0001t0073 a0001c0001t0018 a0001c0001t0068 a0001c0001t0073	a0001c0001t0018g0130 a0001c0001t0068g0124 a0001c0001t0073g0116 a0001c0001t0018g0130 a0001c0001t0068g0124 a0001c0001t0073g0116	3	134	0.0224	13	c.-72 others(32): Show c.-720-9310_-720-9309insTTCTTTTCTTTCT	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	2/8			chr1	TogoVar
HIVEP3_chr1_41501365_41923922	41643906	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG02056.hp2 NA21309.hp1 HG00408.hp2 HG02056.hp2 NA21309.hp1	a0002 a0023 a0002 a0023	a0002c0002 a0023c0027 a0002c0002 a0023c0027	a0002c0002t0011 a0002c0002t0063 a0023c0027t0003 a0002c0002t0011 a0002c0002t0063 a0023c0027t0003	a0002c0002t0011g0121 a0002c0002t0063g0022 a0023c0027t0003g0077 a0002c0002t0011g0121 a0002c0002t0063g0022 a0023c0027t0003g0077	3	134	0.0224	13	c.-72 others(34): Show c.-720-14960_-720-14959insCAAAAAAAAAAAA	HIVEP3	ENSG00000127124.16	transcript	ENST00000372583.6	protein_coding	2/8			chr1	TogoVar
HK1_chr10_69273496_69406882	69276116	A A	ATATATAT others(6): Show ATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02273.hp2 NA18942.hp1 HG02273.hp2 NA18942.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0205 a0001c0002t0001g0275 a0001c0002t0001g0205 a0001c0002t0001g0275	2	280	0.0071	13	c.-28 others(24): Show c.-2865_-2864insTATATATATATAT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding		2379		chr10	TogoVar
HK1_chr10_69273496_69406882	69276118	A A	AAAAAAAT others(6): Show AAAAAAATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0259 a0001c0001t0001g0259	1	280	0.0036	13	c.-28 others(24): Show c.-2863_-2862insAAAAAATATATAT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding		2377		chr10	TogoVar
HK1_chr10_69273496_69406882	69276118	A A	AAAAATAT others(6): Show AAAAATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG02818.hp2 NA18948.hp2 others(1): Show HG00408.hp1 HG02818.hp2 NA18948.hp2 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0154 a0001c0001t0001g0264 a0001c0002t0001g0260 others(1): Show a0001c0001t0001g0154 a0001c0001t0001g0264 a0001c0002t0001g0260 a0001c0002t0001g0261	4	280	0.0143	13	c.-28 others(24): Show c.-2863_-2862insAAAATATATATAT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding		2377		chr10	TogoVar
HK1_chr10_69273496_69406882	69276118	A A	AAATATAT others(6): Show AAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0155 a0001c0002t0001g0155	1	280	0.0036	13	c.-28 others(24): Show c.-2863_-2862insAATATATATATAT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding		2377		chr10	TogoVar
HK1_chr10_69273496_69406882	69276118	A A	ATATATAT others(6): Show ATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	280	0.0036	13	c.-28 others(24): Show c.-2863_-2862insTATATATATATAT	HK1	ENSG00000156515.25	transcript	ENST00000643399.2	protein_coding		2377		chr10	TogoVar
HKDC1_chr10_69215332_69272552	69233897	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(107): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00639.hp2 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01099.hp2 HG01123.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01517.hp2 HG01884.hp1 HG01943.hp2 HG01993.hp1 HG02040.hp2 HG02055.hp1 HG02071.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp2 HG02135.hp1 HG02280.hp2 HG02293.hp1 HG02559.hp1 HG02559.hp2 HG02602.hp2 HG02698.hp1 HG02735.hp2 HG02809.hp1 HG02895.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03017.hp1 HG03490.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04228.hp2 NA18612.hp1 NA18747.hp1 NA18942.hp2 NA18951.hp2 NA18952.hp2 NA18959.hp1 NA18969.hp1 NA18971.hp2 NA18977.hp2 NA18980.hp1 NA18989.hp1 NA18999.hp1 NA19002.hp2 NA19003.hp2 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19012.hp1 NA19056.hp1 NA19056.hp2 NA19063.hp1 NA19064.hp2 NA19077.hp2 NA19080.hp2 NA19082.hp2 NA20752.hp2 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0003 a0001c0005 a0001c0018 others(12): Show a0001c0003 a0001c0005 a0001c0018 a0002c0002 a0002c0007 a0002c0024 a0002c0026 a0002c0028 a0002c0030 a0003c0001 a0003c0035 a0004c0004 a0004c0017 a0006c0013 a0006c0019	a0001c0003t0001 a0001c0003t0002 a0001c0005t0001 others(19): Show a0001c0003t0001 a0001c0003t0002 a0001c0005t0001 a0001c0018t0002 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0006 a0002c0002t0012 a0002c0007t0001 a0002c0024t0002 a0002c0026t0002 a0002c0028t0001 a0002c0030t0002 a0003c0001t0001 a0003c0001t0010 a0003c0035t0001 a0004c0004t0001 a0004c0004t0004 a0004c0017t0001 a0006c0013t0001 a0006c0019t0002	a0001c0003t0001g0335 a0001c0003t0002g0065 a0001c0005t0001g0034 others(105): Show a0001c0003t0001g0335 a0001c0003t0002g0065 a0001c0005t0001g0034 a0001c0005t0001g0040 a0001c0005t0001g0041 a0001c0005t0001g0258 a0001c0018t0002g0030 a0001c0018t0002g0032 a0002c0002t0001g0050 a0002c0002t0001g0075 a0002c0002t0002g0010 a0002c0002t0002g0012 a0002c0002t0002g0020 a0002c0002t0002g0036 a0002c0002t0002g0073 a0002c0002t0002g0077 a0002c0002t0002g0151 a0002c0002t0002g0153 a0002c0002t0002g0224 a0002c0002t0002g0235 a0002c0002t0002g0250 a0002c0002t0002g0256 a0002c0002t0002g0259 a0002c0002t0002g0261 a0002c0002t0002g0268 a0002c0002t0002g0269 a0002c0002t0002g0271 a0002c0002t0002g0272 a0002c0002t0002g0273 a0002c0002t0002g0274 a0002c0002t0002g0281 a0002c0002t0002g0283 a0002c0002t0002g0284 a0002c0002t0002g0286 a0002c0002t0002g0291 a0002c0002t0002g0294 a0002c0002t0002g0302 a0002c0002t0002g0303 a0002c0002t0002g0319 a0002c0002t0002g0328 a0002c0002t0002g0329 a0002c0002t0002g0332 a0002c0002t0002g0347 a0002c0002t0003g0049 a0002c0002t0003g0052 a0002c0002t0003g0150 a0002c0002t0006g0304 a0002c0002t0012g0051 a0002c0007t0001g0026 a0002c0007t0001g0027 a0002c0007t0001g0035 a0002c0007t0001g0037 a0002c0007t0001g0248 a0002c0007t0001g0249 a0002c0007t0001g0285 a0002c0024t0002g0025 a0002c0026t0002g0255 a0002c0028t0001g0293 a0002c0030t0002g0323 a0003c0001t0001g0029 a0003c0001t0001g0042 a0003c0001t0010g0159 a0003c0035t0001g0158 a0004c0004t0001g0031 a0004c0004t0001g0038 a0004c0004t0001g0039 a0004c0004t0001g0096 a0004c0004t0001g0097 a0004c0004t0001g0129 a0004c0004t0001g0146 a0004c0004t0001g0147 a0004c0004t0001g0152 a0004c0004t0001g0154 a0004c0004t0001g0155 a0004c0004t0001g0156 a0004c0004t0001g0217 a0004c0004t0001g0270 a0004c0004t0001g0275 a0004c0004t0001g0276 a0004c0004t0001g0282 a0004c0004t0001g0290 a0004c0004t0001g0295 a0004c0004t0001g0310 a0004c0004t0001g0320 a0004c0004t0001g0322 a0004c0004t0001g0324 a0004c0004t0001g0325 a0004c0004t0001g0326 a0004c0004t0001g0327 a0004c0004t0001g0330 a0004c0004t0001g0333 a0004c0004t0001g0334 a0004c0004t0001g0342 a0004c0004t0001g0343 a0004c0004t0001g0344 a0004c0004t0001g0345 a0004c0004t0001g0346 a0004c0004t0001g0350 a0004c0004t0001g0351 a0004c0004t0004g0318 a0004c0004t0004g0321 a0004c0004t0004g0331 a0004c0017t0001g0208 a0004c0017t0001g0289 a0006c0013t0001g0160 a0006c0013t0001g0279 a0006c0013t0001g0280 a0006c0019t0002g0296	110	380	0.2895	13	c.495 others(28): Show c.495+765_495+777dupAAAAAAAAAAAAA	HKDC1	ENSG00000156510.13	transcript	ENST00000354624.6	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr10	TogoVar
HLA-DQA1_chr6_32632406_32648684	32634241	A A	AAAAAAAG others(6): Show AAAAAAAGAAAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01256.hp2 HG01258.hp2 HG01256.hp2 HG01258.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0005 a0002c0002t0002g0005	2	86	0.0233	13	c.-32 others(24): Show c.-3218_-3217insAAAAAAGAAAAAG	HLA-DQA1	ENSG00000196735.13	transcript	ENST00000343139.11	protein_coding		3164		chr6	TogoVar
HLA-DQA2_chr6_32736391_32752198	32747183	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0017 a0003c0009t0017	a0003c0009t0017g0056 a0003c0009t0017g0056	1	455	0.0022	13	c.59 others(22): Show c.597_*598insAAAAAAAAAAAAA	HLA-DQA2	ENSG00000237541.4	transcript	ENST00000374940.4	protein_coding	5/5	765	INFO_REALIGN_3_PRIME	chr6	TogoVar
HLA-DRA_chr6_32434887_32450046	32435620	A A	ACACACAC others(6): Show ACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(12): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00639.hp1 HG00738.hp1 HG01069.hp2 HG01070.hp1 HG02273.hp1 HG02523.hp1 HG02809.hp1 HG02970.hp1 HG03098.hp1 HG03209.hp2 HG03669.hp1 NA19005.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0006 a0002c0002t0002 a0001c0001t0001 a0001c0001t0006 a0002c0002t0002	a0001c0001t0001g0001 a0001c0001t0006g0012 a0002c0002t0002g0016 others(1): Show a0001c0001t0001g0001 a0001c0001t0006g0012 a0002c0002t0002g0016 a0002c0002t0002g0025	15	459	0.0327	13	c.-43 others(24): Show c.-4331_-4330insCACACACACACAC	HLA-DRA	ENSG00000204287.14	transcript	ENST00000395388.7	protein_coding		4266		chr6	TogoVar
HLA-DRA_chr6_32434887_32450046	32439070	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0003	1	459	0.0022	13	c.-88 others(22): Show c.-881_-880insAAAAAAAAAAAAA	HLA-DRA	ENSG00000204287.14	transcript	ENST00000395388.7	protein_coding		816		chr6	TogoVar
HLA-DRA_chr6_32434887_32450046	32449276	G G	GAAAGAGA others(6): Show GAAAGAGAAAGGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	459	0.0022	13	c.46 others(24): Show c.4636_*4637insAAAGAGAAAGGAA	HLA-DRA	ENSG00000204287.14	transcript	ENST00000395388.7	protein_coding		4231		chr6	TogoVar
HLA-F_chr6_29718434_29732296	29722793	G G	GAAGAAGA others(6): Show GAAGAAGAAGAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	443	0.0023	13	c.-67 others(22): Show c.-671_-670insAAGAAGAAGAAGA	HLA-F	ENSG00000204642.14	transcript	ENST00000259951.12	protein_coding		640		chr6	TogoVar
HLA-G_chr6_29822825_29836021	29831449	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00423.hp2 HG00544.hp1 others(25): Show HG00099.hp2 HG00423.hp2 HG00544.hp1 HG00621.hp1 HG00738.hp2 HG00741.hp1 HG01069.hp1 HG01070.hp1 HG01099.hp1 HG01123.hp2 HG01261.hp1 HG01993.hp1 HG02083.hp1 HG02155.hp2 HG02165.hp1 HG02523.hp1 HG02735.hp2 HG02976.hp1 HG03017.hp1 HG03654.hp1 HG04115.hp2 HG04228.hp2 NA18954.hp2 NA18980.hp1 NA19002.hp2 NA19003.hp1 NA19063.hp1 NA20905.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0002 a0001c0004t0004 a0001c0003t0002 a0001c0004t0004	a0001c0003t0002g0002 a0001c0004t0004g0004 a0001c0003t0002g0002 a0001c0004t0004g0004	28	479	0.0585	13	c.71 others(22): Show c.710_*711insTTTTTTTTTTTTG	HLA-G	ENSG00000204632.13	transcript	ENST00000360323.11	protein_coding		429		chr6	TogoVar
HLCS_chr21_36743626_36971669	36793295	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01255.hp1 HG01256.hp2 others(18): Show HG00735.hp1 HG01255.hp1 HG01256.hp2 HG01258.hp2 HG01346.hp1 HG01361.hp2 HG02040.hp1 HG02083.hp1 HG03098.hp1 HG03225.hp1 HG03669.hp1 NA18612.hp2 NA18942.hp1 NA18950.hp1 NA18952.hp2 NA18984.hp1 NA18989.hp1 NA19004.hp2 NA19074.hp2 NA20129.hp2 NA20805.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0006c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0020 a0001c0001t0028 a0001c0001t0035 a0001c0001t0088 a0001c0003t0003 a0001c0004t0042 a0006c0016t0001	a0001c0001t0001g0122 a0001c0001t0002g0174 a0001c0001t0002g0238 others(18): Show a0001c0001t0001g0122 a0001c0001t0002g0174 a0001c0001t0002g0238 a0001c0001t0003g0166 a0001c0001t0003g0226 a0001c0001t0003g0244 a0001c0001t0005g0021 a0001c0001t0005g0056 a0001c0001t0007g0227 a0001c0001t0009g0201 a0001c0001t0009g0202 a0001c0001t0009g0235 a0001c0001t0009g0236 a0001c0001t0013g0223 a0001c0001t0020g0034 a0001c0001t0028g0167 a0001c0001t0035g0097 a0001c0001t0088g0105 a0001c0003t0003g0199 a0001c0004t0042g0209 a0006c0016t0001g0116	21	258	0.0814	13	c.189 others(34): Show c.1893-26023_1893-26011dupAAAAAAAAAAAAA	HLCS	ENSG00000159267.17	transcript	ENST00000674895.3	protein_coding	6/10			chr21	TogoVar
HLCS_chr21_36743626_36971669	36823610	G G	GGTTGTGT others(6): Show GGTTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0167 a0001c0001t0028g0167	1	258	0.0039	13	c.189 others(34): Show c.1893-56326_1893-56325insACACACACACAAC	HLCS	ENSG00000159267.17	transcript	ENST00000674895.3	protein_coding	6/10			chr21	TogoVar
HLTF_chr3_149025127_149091533	149035690	T T	TTTAAGAG others(6): Show TTTAAGAGTCAGTC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00423.hp1 HG00438.hp1 others(90): Show HG00099.hp1 HG00423.hp1 HG00438.hp1 HG00597.hp2 HG00621.hp2 HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01069.hp2 HG01074.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01256.hp2 HG01257.hp1 HG01261.hp2 HG01358.hp1 HG01516.hp1 HG01928.hp1 HG01952.hp2 HG01975.hp1 HG01978.hp1 HG01981.hp1 HG02015.hp2 HG02080.hp2 HG02135.hp1 HG02148.hp2 HG02155.hp2 HG02165.hp1 HG02257.hp1 HG02293.hp1 HG02300.hp1 HG02300.hp2 HG02630.hp1 HG02683.hp1 HG02717.hp2 HG02738.hp1 HG02809.hp1 HG02886.hp2 HG02895.hp1 HG03041.hp2 HG03195.hp1 HG03486.hp1 HG03491.hp1 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG04199.hp2 HG04204.hp2 NA18522.hp1 NA18747.hp2 NA18941.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp2 NA18947.hp2 NA18951.hp2 NA18952.hp2 NA18956.hp1 NA18957.hp1 NA18960.hp2 NA18963.hp1 NA18964.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp2 NA18973.hp2 NA18978.hp2 NA18980.hp1 NA18984.hp1 NA18986.hp1 NA18989.hp2 NA18998.hp2 NA18999.hp1 NA19002.hp1 NA19007.hp1 NA19010.hp2 NA19043.hp2 NA19056.hp2 NA19057.hp2 NA19074.hp2 NA19076.hp1 NA19077.hp1 NA19078.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19085.hp1 NA20805.hp2	a0001 a0012 a0013 a0001 a0012 a0013	a0001c0002 a0001c0007 a0012c0020 others(1): Show a0001c0002 a0001c0007 a0012c0020 a0013c0019	a0001c0002t0003 a0001c0002t0004 a0001c0002t0013 others(4): Show a0001c0002t0003 a0001c0002t0004 a0001c0002t0013 a0001c0002t0021 a0001c0007t0003 a0012c0020t0003 a0013c0019t0003	a0001c0002t0003g0002 a0001c0002t0003g0004 a0001c0002t0003g0005 others(78): Show a0001c0002t0003g0002 a0001c0002t0003g0004 a0001c0002t0003g0005 a0001c0002t0003g0006 a0001c0002t0003g0007 a0001c0002t0003g0011 a0001c0002t0003g0013 a0001c0002t0003g0014 a0001c0002t0003g0057 a0001c0002t0003g0058 a0001c0002t0003g0060 a0001c0002t0003g0062 a0001c0002t0003g0063 a0001c0002t0003g0065 a0001c0002t0003g0067 a0001c0002t0003g0069 a0001c0002t0003g0070 a0001c0002t0003g0071 a0001c0002t0003g0072 a0001c0002t0003g0073 a0001c0002t0003g0074 a0001c0002t0003g0075 a0001c0002t0003g0076 a0001c0002t0003g0078 a0001c0002t0003g0079 a0001c0002t0003g0081 a0001c0002t0003g0082 a0001c0002t0003g0084 a0001c0002t0003g0085 a0001c0002t0003g0087 a0001c0002t0003g0088 a0001c0002t0003g0089 a0001c0002t0003g0090 a0001c0002t0003g0092 a0001c0002t0003g0094 a0001c0002t0003g0096 a0001c0002t0003g0098 a0001c0002t0003g0099 a0001c0002t0003g0100 a0001c0002t0003g0101 a0001c0002t0003g0102 a0001c0002t0003g0103 a0001c0002t0003g0104 a0001c0002t0003g0106 a0001c0002t0003g0107 a0001c0002t0003g0109 a0001c0002t0003g0110 a0001c0002t0003g0112 a0001c0002t0003g0114 a0001c0002t0003g0115 a0001c0002t0003g0117 a0001c0002t0003g0118 a0001c0002t0003g0119 a0001c0002t0003g0120 a0001c0002t0003g0121 a0001c0002t0003g0122 a0001c0002t0003g0123 a0001c0002t0003g0124 a0001c0002t0003g0125 a0001c0002t0003g0126 a0001c0002t0003g0127 a0001c0002t0004g0023 a0001c0002t0004g0253 a0001c0002t0004g0256 a0001c0002t0004g0257 a0001c0002t0004g0259 a0001c0002t0004g0261 a0001c0002t0004g0263 a0001c0002t0004g0264 a0001c0002t0004g0265 a0001c0002t0004g0267 a0001c0002t0004g0355 a0001c0002t0013g0077 a0001c0002t0013g0080 a0001c0002t0021g0365 a0001c0007t0003g0064 a0001c0007t0003g0093 a0001c0007t0003g0095 a0001c0007t0003g0108 a0012c0020t0003g0083 a0013c0019t0003g0116	93	404	0.2302	13	c.279 others(30): Show c.2797-693_2797-692insGACTGACTCTTAA	HLTF	ENSG00000071794.16	transcript	ENST00000310053.10	protein_coding	23/24			chr3	TogoVar
HLTF_chr3_149025127_149091533	149036297	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00408.hp2 HG00597.hp1 others(41): Show HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00738.hp2 HG01071.hp2 HG01123.hp1 HG01255.hp2 HG01257.hp2 HG01517.hp1 HG01978.hp2 HG02055.hp1 HG02055.hp2 HG02074.hp2 HG02109.hp1 HG02145.hp2 HG02280.hp2 HG02293.hp2 HG02486.hp2 HG02615.hp2 HG02630.hp2 HG02723.hp1 HG02818.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03139.hp2 HG03239.hp1 HG03453.hp2 HG04184.hp1 NA18939.hp2 NA18962.hp2 NA18965.hp1 NA18990.hp2 NA18991.hp2 NA18992.hp1 NA18993.hp2 NA19002.hp2 NA19003.hp1 NA19005.hp1 NA19010.hp1 NA19060.hp1 NA19064.hp2 NA19066.hp1 NA19082.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0006 a0010	a0001c0001 a0001c0002 a0001c0005 others(7): Show a0001c0001 a0001c0002 a0001c0005 a0001c0017 a0002c0004 a0003c0006 a0004c0008 a0005c0010 a0006c0009 a0010c0012	a0001c0001t0001 a0001c0002t0006 a0001c0002t0010 others(8): Show a0001c0001t0001 a0001c0002t0006 a0001c0002t0010 a0001c0005t0002 a0001c0017t0001 a0002c0004t0001 a0003c0006t0005 a0004c0008t0002 a0005c0010t0007 a0006c0009t0002 a0010c0012t0001	a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0132 others(37): Show a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0132 a0001c0001t0001g0146 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0162 a0001c0001t0001g0172 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0184 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0230 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0251 a0001c0001t0001g0359 a0001c0002t0006g0052 a0001c0002t0010g0048 a0001c0005t0002g0137 a0001c0017t0001g0158 a0002c0004t0001g0204 a0002c0004t0001g0241 a0003c0006t0005g0012 a0003c0006t0005g0043 a0003c0006t0005g0045 a0004c0008t0002g0029 a0005c0010t0007g0037 a0005c0010t0007g0039 a0006c0009t0002g0034 a0010c0012t0001g0238	44	404	0.1089	13	c.279 others(32): Show c.2797-1300_2797-1299insAAAAAAAAAAAAA	HLTF	ENSG00000071794.16	transcript	ENST00000310053.10	protein_coding	23/24			chr3	TogoVar
HLTF_chr3_149025127_149091533	149079373	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0131 a0001c0001t0011g0131	1	404	0.0025	13	c.229 others(30): Show c.229-3339_229-3327dupTTTTTTTTTTTTT	HLTF	ENSG00000071794.16	transcript	ENST00000310053.10	protein_coding	2/24			chr3	TogoVar
HMBOX1_chr8_28885395_29058262	28895674	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0115 a0001c0001t0006g0115	1	344	0.0029	13	c.-58 others(30): Show c.-58+4997_-58+5009dupAAAAAAAAAAAAA	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28900267	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0289 a0001c0001t0001g0289	1	344	0.0029	13	c.-58 others(30): Show c.-58+9589_-58+9590insTATATATATATAT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	1/9			chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28900269	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01109.hp1 HG03654.hp1 others(2): Show HG00735.hp2 HG01109.hp1 HG03654.hp1 NA18957.hp2 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0015 a0001c0001t0001 a0001c0001t0015	a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 others(2): Show a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0261 a0001c0001t0015g0260	5	344	0.0145	13	c.-58 others(30): Show c.-58+9591_-58+9592insTATATATATATAT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	1/9			chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28973803	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG03654.hp2 NA18988.hp2 HG00558.hp2 HG03654.hp2 NA18988.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0089 a0001c0001t0004g0043 a0001c0001t0004g0046 a0001c0001t0003g0089 a0001c0001t0004g0043 a0001c0001t0004g0046	3	344	0.0087	13	c.500 others(30): Show c.500+3303_500+3315dupTTTTTTTTTTTTT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28973812	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02257.hp1 HG02615.hp2 others(10): Show HG01109.hp2 HG02257.hp1 HG02615.hp2 HG02818.hp1 HG02896.hp1 HG02970.hp1 HG03225.hp1 NA18906.hp1 NA18949.hp2 NA18950.hp2 NA18959.hp2 NA18969.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008	a0001c0001t0003g0086 a0001c0001t0003g0099 a0001c0001t0003g0101 others(10): Show a0001c0001t0003g0086 a0001c0001t0003g0099 a0001c0001t0003g0101 a0001c0001t0003g0113 a0001c0001t0003g0168 a0001c0001t0003g0181 a0001c0001t0003g0182 a0001c0001t0003g0183 a0001c0001t0003g0194 a0001c0001t0003g0197 a0001c0001t0003g0232 a0001c0001t0006g0107 a0001c0001t0008g0102	13	344	0.0378	13	c.500 others(30): Show c.500+3305_500+3306insGTTTTTTTTTTTT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr8	TogoVar
HMBOX1_chr8_28885395_29058262	28973813	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00408.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0108 a0001c0001t0003g0108	1	344	0.0029	13	c.500 others(30): Show c.500+3306_500+3307insGTTTTTTTTTTTT	HMBOX1	ENSG00000147421.18	transcript	ENST00000287701.15	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr8	TogoVar
HMCN1_chr1_185729391_186195949	185999462	A A	ATTTGTCT others(6): Show ATTTGTCTCACTAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02055.hp1 HG02109.hp1 others(6): Show HG01243.hp1 HG02055.hp1 HG02109.hp1 HG02258.hp1 HG02486.hp2 HG02615.hp1 HG02622.hp2 HG02922.hp2 HG03486.hp2	a0005 a0007 a0009 others(2): Show a0005 a0007 a0009 a0010 a0013	a0005c0005 a0007c0010 a0009c0052 others(2): Show a0005c0005 a0007c0010 a0009c0052 a0010c0053 a0013c0011	a0005c0005t0003 a0007c0010t0001 a0007c0010t0002 others(3): Show a0005c0005t0003 a0007c0010t0001 a0007c0010t0002 a0009c0052t0002 a0010c0053t0001 a0013c0011t0004	a0005c0005t0003g0011 a0005c0005t0003g0012 a0005c0005t0003g0061 others(6): Show a0005c0005t0003g0011 a0005c0005t0003g0012 a0005c0005t0003g0061 a0007c0010t0001g0005 a0007c0010t0002g0003 a0009c0052t0002g0077 a0010c0053t0001g0079 a0013c0011t0004g0057 a0013c0011t0004g0058	9	92	0.0978	13	c.387 others(30): Show c.3875-580_3875-579insGTCTCACTACTTT	HMCN1	ENSG00000143341.12	transcript	ENST00000271588.9	protein_coding	25/106		INFO_REALIGN_3_PRIME	chr1	TogoVar
HMCN1_chr1_185729391_186195949	186110977	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02055.hp1 HG02486.hp2 others(2): Show HG01243.hp1 HG02055.hp1 HG02486.hp2 HG03195.hp2 HG03516.hp1	a0004 a0005 a0011 a0004 a0005 a0011	a0004c0002 a0005c0005 a0011c0008 a0004c0002 a0005c0005 a0011c0008	a0004c0002t0001 a0005c0005t0003 a0011c0008t0001 a0004c0002t0001 a0005c0005t0003 a0011c0008t0001	a0004c0002t0001g0017 a0005c0005t0003g0011 a0005c0005t0003g0012 others(2): Show a0004c0002t0001g0017 a0005c0005t0003g0011 a0005c0005t0003g0012 a0005c0005t0003g0061 a0011c0008t0001g0070	5	92	0.0544	13	c.109 others(34): Show c.10990-1826_10990-1814dupTTTTTTTTTTTTT	HMCN1	ENSG00000143341.12	transcript	ENST00000271588.9	protein_coding	71/106		INFO_REALIGN_3_PRIME	chr1	TogoVar
HMCN2_chr9_130260760_130439123	130305937	T T	TGCTCAGG others(6): Show TGCTCAGGGGCCGC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0029 a0029	a0029c0144 a0029c0144	a0029c0144t0002 a0029c0144t0002	a0029c0144t0002g0251 a0029c0144t0002g0251	1	258	0.0039	13	c.181 others(30): Show c.1817-191_1817-179dupGCTCAGGGGCCGC	HMCN2	ENSG00000148357.18	transcript	ENST00000683500.2	protein_coding	11/97		INFO_REALIGN_3_PRIME	chr9	TogoVar
HMCN2_chr9_130260760_130439123	130315243	T T	TCCCTCCC others(6): Show TCCCTCCCCTCCCC	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA19090.hp1 HG02257.hp2 NA19090.hp1	a0035 a0154 a0035 a0154	a0035c0118 a0154c0173 a0035c0118 a0154c0173	a0035c0118t0001 a0154c0173t0002 a0035c0118t0001 a0154c0173t0002	a0035c0118t0001g0060 a0154c0173t0002g0250 a0035c0118t0001g0060 a0154c0173t0002g0250	2	258	0.0078	13	c.235 others(32): Show c.2351-4252_2351-4251insCCCTCCCCTCCCC	HMCN2	ENSG00000148357.18	transcript	ENST00000683500.2	protein_coding	15/97			chr9	TogoVar
HMGA2_chr12_65819483_65971291	65838998	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00733.hp1 HG01070.hp1 others(69): Show HG00609.hp1 HG00733.hp1 HG01070.hp1 HG01074.hp2 HG01192.hp2 HG01243.hp1 HG01256.hp1 HG01496.hp1 HG02074.hp1 HG02083.hp2 HG02135.hp2 HG02165.hp1 HG02257.hp1 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02738.hp2 HG02818.hp1 HG02896.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03540.hp2 HG03831.hp1 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04228.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18941.hp1 NA18948.hp2 NA18951.hp1 NA18957.hp1 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18970.hp2 NA18978.hp1 NA18984.hp1 NA18988.hp2 NA18992.hp2 NA19001.hp2 NA19003.hp1 NA19011.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19065.hp1 NA19078.hp1 NA19079.hp2 NA19080.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(29): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0021 a0001c0001t0025 a0001c0001t0035 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0047 a0001c0001t0051 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0068 a0001c0001t0080 a0001c0001t0097 a0001c0001t0101 a0001c0001t0102 a0001c0001t0103 a0001c0001t0106 a0001c0001t0108 a0001c0001t0110 a0001c0001t0111 a0001c0001t0132	a0001c0001t0001g0023 a0001c0001t0001g0029 a0001c0001t0001g0032 others(69): Show a0001c0001t0001g0023 a0001c0001t0001g0029 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0002g0039 a0001c0001t0002g0060 a0001c0001t0002g0065 a0001c0001t0002g0070 a0001c0001t0002g0073 a0001c0001t0003g0213 a0001c0001t0004g0025 a0001c0001t0004g0038 a0001c0001t0004g0069 a0001c0001t0004g0074 a0001c0001t0004g0076 a0001c0001t0005g0014 a0001c0001t0005g0015 a0001c0001t0005g0035 a0001c0001t0005g0053 a0001c0001t0005g0059 a0001c0001t0005g0064 a0001c0001t0007g0017 a0001c0001t0007g0021 a0001c0001t0007g0022 a0001c0001t0007g0072 a0001c0001t0010g0031 a0001c0001t0010g0040 a0001c0001t0010g0044 a0001c0001t0010g0057 a0001c0001t0011g0027 a0001c0001t0011g0049 a0001c0001t0011g0066 a0001c0001t0011g0067 a0001c0001t0015g0075 a0001c0001t0021g0170 a0001c0001t0021g0171 a0001c0001t0025g0173 a0001c0001t0025g0174 a0001c0001t0035g0229 a0001c0001t0042g0047 a0001c0001t0042g0071 a0001c0001t0043g0018 a0001c0001t0043g0026 a0001c0001t0044g0051 a0001c0001t0044g0052 a0001c0001t0045g0050 a0001c0001t0047g0183 a0001c0001t0047g0185 a0001c0001t0051g0176 a0001c0001t0053g0010 a0001c0001t0054g0177 a0001c0001t0055g0221 a0001c0001t0068g0175 a0001c0001t0080g0048 a0001c0001t0097g0024 a0001c0001t0101g0043 a0001c0001t0102g0218 a0001c0001t0103g0019 a0001c0001t0106g0167 a0001c0001t0108g0180 a0001c0001t0110g0182 a0001c0001t0111g0227 a0001c0001t0132g0028	72	236	0.3051	13	c.249 others(28): Show c.249+441_249+442insTTTTTTTTTTTTT	HMGA2	ENSG00000149948.14	transcript	ENST00000403681.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
HMGA2_chr12_65819483_65971291	65875589	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01167.hp2 HG01258.hp1 others(8): Show HG00733.hp2 HG01167.hp2 HG01258.hp1 HG01433.hp2 HG02027.hp1 HG02135.hp1 HG02258.hp2 HG02965.hp1 NA18961.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0009 a0001c0001t0014 a0001c0001t0017 others(8): Show a0001c0001t0009 a0001c0001t0014 a0001c0001t0017 a0001c0001t0030 a0001c0001t0034 a0001c0001t0059 a0001c0001t0070 a0001c0001t0085 a0001c0001t0095 a0001c0001t0131 a0002c0002t0020	a0001c0001t0009g0104 a0001c0001t0014g0112 a0001c0001t0017g0105 others(8): Show a0001c0001t0009g0104 a0001c0001t0014g0112 a0001c0001t0017g0105 a0001c0001t0030g0136 a0001c0001t0034g0094 a0001c0001t0059g0128 a0001c0001t0070g0118 a0001c0001t0085g0143 a0001c0001t0095g0103 a0001c0001t0131g0222 a0002c0002t0020g0099	11	236	0.0466	13	c.249 others(32): Show c.249+37049_249+37061dupTTTTTTTTTTTTT	HMGA2	ENSG00000149948.14	transcript	ENST00000403681.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
HMGB1_chr13_30451704_30470936	30466222	C C	CACATGCA others(6): Show CACATGCACACCTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0128 a0001c0003t0128	a0001c0003t0128g0225 a0001c0003t0128g0225	1	384	0.0026	13	c.-44 others(22): Show c.-442_-441insTAGGTGTGCATGT	HMGB1	ENSG00000189403.15	transcript	ENST00000341423.10	protein_coding		287		chr13	TogoVar

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