Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LHFPL3_chr7_104323603_104913561	104430454	A A	ACATATAT others(6): Show ACATATATATATAT	intron_variant intron_variant	MODIFIER	NA20752.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	86	0.0116	13	c.445 others(34): Show c.445+101230_445+101231insCATATATATATAT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2			chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104547242	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0062 a0001c0001t0003g0062	1	86	0.0116	13	c.446 others(34): Show c.446-189417_446-189405dupAAAAAAAAAAAAA	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104585480	A A	ACACACAC others(6): Show ACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0024 a0001c0001t0003g0024	1	86	0.0116	13	c.446 others(34): Show c.446-151195_446-151194insCACACACACACAC	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2			chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104614653	C C	CTTCTCTC others(6): Show CTTCTCTCCTTCCT	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	86	0.0116	13	c.446 others(34): Show c.446-122021_446-122020insTCTCTCCTTCCTT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL5_chr6_35800352_35829070	35818352	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0025 a0001c0001t0020g0025	1	386	0.0026	13	c.650 others(30): Show c.650-1085_650-1084insATATATATATATA	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	2/3			chr6	TogoVar
LHFPL6_chr13_39337892_39608193	39345512	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp2 HG00609.hp1 others(21): Show HG00544.hp1 HG00544.hp2 HG00609.hp1 HG00735.hp2 HG01109.hp1 HG02040.hp1 HG02074.hp2 HG02129.hp1 HG02559.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG03195.hp2 HG03710.hp2 HG04115.hp2 HG04199.hp1 NA18942.hp1 NA18975.hp1 NA19000.hp1 NA19003.hp1 NA19030.hp2 NA19068.hp1 NA19084.hp2 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0016 a0001c0001t0018 a0001c0002t0003 a0001c0002t0009 a0001c0006t0002	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0110 others(21): Show a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0110 a0001c0001t0001g0121 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0170 a0001c0001t0001g0191 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0002g0065 a0001c0001t0002g0149 a0001c0001t0002g0179 a0001c0001t0002g0196 a0001c0001t0003g0053 a0001c0001t0003g0157 a0001c0001t0009g0197 a0001c0001t0016g0079 a0001c0001t0018g0238 a0001c0002t0003g0015 a0001c0002t0009g0007 a0001c0006t0002g0228	24	242	0.0992	13	c.485 others(30): Show c.485-1471_485-1459dupTTTTTTTTTTTTT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3			chr13	TogoVar
LHFPL7_chr22_24930098_24951694	24931126	G G	GAACCCAT others(6): Show GAACCCATTTGTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	420	0.0024	13	c.42 others(24): Show c.4206_*4207insGGACAAATGGGTT	LHFPL7	ENSG00000206069.7	transcript	ENST00000640159.2	protein_coding		3971		chr22	TogoVar
LHFPL7_chr22_24930098_24951694	24939924	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02559.hp1 HG03453.hp2 HG01884.hp1 HG02559.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0058 a0001c0001t0001g0256 a0001c0001t0001g0058 a0001c0001t0001g0256	3	420	0.0071	13	c.-17 others(28): Show c.-17-385_-17-373dupAAAAAAAAAAAAA	LHFPL7	ENSG00000206069.7	transcript	ENST00000640159.2	protein_coding	1/3			chr22	TogoVar
LHPP_chr10_124456823_124619141	124475030	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp2 others(49): Show HG00099.hp2 HG00140.hp1 HG00280.hp2 HG00408.hp2 HG00735.hp1 HG01069.hp1 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01346.hp1 HG01361.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01943.hp1 HG01952.hp1 HG01975.hp2 HG01981.hp2 HG02015.hp2 HG02135.hp1 HG02300.hp1 HG02451.hp2 HG02523.hp2 HG02683.hp1 HG02735.hp1 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03669.hp2 HG03831.hp1 HG03927.hp2 HG04204.hp1 NA18942.hp1 NA18950.hp1 NA18954.hp1 NA18986.hp2 NA19012.hp2 NA19068.hp2 NA19077.hp1 NA19091.hp2 NA20752.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0004c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 a0002c0002t0001 a0003c0003t0009 a0004c0007t0003	a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0022 others(49): Show a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0028 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0068 a0001c0001t0001g0074 a0001c0001t0001g0080 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0095 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0127 a0001c0001t0001g0155 a0001c0001t0001g0158 a0001c0001t0001g0181 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0253 a0001c0001t0003g0101 a0001c0001t0003g0205 a0001c0001t0004g0029 a0001c0001t0004g0112 a0001c0001t0004g0113 a0001c0001t0004g0115 a0001c0001t0014g0096 a0002c0002t0001g0021 a0003c0003t0009g0257 a0004c0007t0003g0215	52	260	0.2000	13	c.126 others(30): Show c.126-9099_126-9098insTTTTTTTTTTTTT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124538189	G G	GGGGTCAC others(6): Show GGGGTCACCATGCA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(239): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01192.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02735.hp1 HG02738.hp2 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03831.hp2 HG03927.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18947.hp1 NA18947.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18954.hp1 NA18954.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18966.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18975.hp2 NA18980.hp1 NA18980.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18990.hp1 NA18990.hp2 NA18995.hp1 NA18995.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19057.hp1 NA19057.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19068.hp1 NA19068.hp2 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19077.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19085.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0006	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0003c0004 a0004c0007 a0005c0006 a0006c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0016 a0003c0003t0002 a0003c0003t0005 a0003c0003t0006 a0003c0003t0008 a0003c0003t0009 a0003c0004t0007 a0004c0007t0003 a0005c0006t0001 a0006c0005t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(239): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0172 a0001c0001t0001g0175 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0003g0035 a0001c0001t0003g0064 a0001c0001t0003g0076 a0001c0001t0003g0101 a0001c0001t0003g0171 a0001c0001t0003g0182 a0001c0001t0003g0202 a0001c0001t0003g0205 a0001c0001t0003g0207 a0001c0001t0004g0020 a0001c0001t0004g0029 a0001c0001t0004g0059 a0001c0001t0004g0060 a0001c0001t0004g0105 a0001c0001t0004g0112 a0001c0001t0004g0113 a0001c0001t0004g0114 a0001c0001t0004g0115 a0001c0001t0004g0173 a0001c0001t0010g0042 a0001c0001t0011g0093 a0001c0001t0012g0027 a0001c0001t0013g0235 a0001c0001t0015g0195 a0001c0001t0017g0025 a0001c0001t0018g0037 a0002c0002t0001g0014 a0002c0002t0001g0021 a0002c0002t0001g0023 a0002c0002t0001g0031 a0002c0002t0001g0039 a0002c0002t0001g0056 a0002c0002t0001g0058 a0002c0002t0001g0078 a0002c0002t0001g0079 a0002c0002t0001g0120 a0002c0002t0001g0121 a0002c0002t0001g0122 a0002c0002t0001g0123 a0002c0002t0001g0125 a0002c0002t0001g0129 a0002c0002t0001g0151 a0002c0002t0001g0176 a0002c0002t0001g0198 a0002c0002t0001g0208 a0002c0002t0001g0209 a0002c0002t0001g0251 a0002c0002t0002g0168 a0002c0002t0003g0030 a0002c0002t0016g0052 a0003c0003t0002g0004 a0003c0003t0002g0005 a0003c0003t0002g0007 a0003c0003t0002g0009 a0003c0003t0002g0010 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0013 a0003c0003t0002g0089 a0003c0003t0002g0090 a0003c0003t0002g0258 a0003c0003t0002g0259 a0003c0003t0002g0260 a0003c0003t0005g0255 a0003c0003t0005g0256 a0003c0003t0006g0153 a0003c0003t0008g0008 a0003c0003t0009g0257 a0003c0004t0007g0006 a0004c0007t0003g0215 a0005c0006t0001g0245 a0006c0005t0001g0162	242	260	0.9308	13	c.716 others(32): Show c.716+20929_716+20930insCAGGGTCACCATG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHX4_chr1_180225264_180283984	180229959	C C	CGGAGGCG others(6): Show CGGAGGCGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp1 HG03927.hp1 NA18978.hp2 HG03831.hp1 HG03927.hp1 NA18978.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0006 a0002c0002t0001 a0001c0001t0006 a0002c0002t0001	a0001c0001t0006g0367 a0002c0002t0001g0117 a0002c0002t0001g0379 a0001c0001t0006g0367 a0002c0002t0001g0117 a0002c0002t0001g0379	3	402	0.0075	13	c.-57 others(22): Show c.-571_-570insGGAGGCGGGGGGG	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding		304		chr1	TogoVar
LHX4_chr1_180225264_180283984	180229961	G G	GAGGCGGG others(6): Show GAGGCGGGGGGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG01123.hp1 HG02027.hp1 others(15): Show HG00099.hp2 HG01123.hp1 HG02027.hp1 HG02071.hp2 HG02074.hp1 HG02155.hp2 NA18942.hp2 NA18977.hp2 NA18979.hp1 NA18987.hp1 NA18995.hp1 NA19004.hp1 NA19004.hp2 NA19006.hp2 NA19011.hp2 NA19088.hp2 NA20752.hp2 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0050 a0002c0002t0001	a0001c0001t0001g0011 a0001c0001t0001g0099 a0001c0001t0001g0131 others(15): Show a0001c0001t0001g0011 a0001c0001t0001g0099 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0002g0130 a0001c0001t0009g0120 a0001c0001t0050g0091 a0002c0002t0001g0083 a0002c0002t0001g0086 a0002c0002t0001g0092 a0002c0002t0001g0104 a0002c0002t0001g0105 a0002c0002t0001g0107 a0002c0002t0001g0116 a0002c0002t0001g0118 a0002c0002t0001g0127 a0002c0002t0001g0136 a0002c0002t0001g0383	18	402	0.0448	13	c.-56 others(22): Show c.-569_-568insAGGCGGGGGGGGC	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding		302		chr1	TogoVar
LIAS_chr4_39454056_39484506	39468502	A A	AAAAAAAT others(6): Show AAAAAAATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0225 a0001c0001t0019g0225	1	424	0.0024	13	c.737 others(28): Show c.737+857_737+858insAAAAATATATATA	LIAS	ENSG00000121897.15	transcript	ENST00000640888.2	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIFR_chr5_38469668_38561646	38517856	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01433.hp1 HG01433.hp2 others(7): Show HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01891.hp1 HG02293.hp1 HG02572.hp2 HG02818.hp1 NA19077.hp2 NA20905.hp1	a0001 a0012 a0013 a0001 a0012 a0013	a0001c0001 a0012c0017 a0013c0018 a0001c0001 a0012c0017 a0013c0018	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0048 a0012c0017t0007 a0013c0018t0006	a0001c0001t0001g0175 a0001c0001t0001g0200 a0001c0001t0001g0243 others(7): Show a0001c0001t0001g0175 a0001c0001t0001g0200 a0001c0001t0001g0243 a0001c0001t0006g0063 a0001c0001t0007g0126 a0001c0001t0007g0130 a0001c0001t0007g0131 a0001c0001t0048g0056 a0012c0017t0007g0129 a0013c0018t0006g0066	10	374	0.0267	13	c.561 others(30): Show c.561+5550_561+5562dupTTTTTTTTTTTTT	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	5/19			chr5	TogoVar
LIG1_chr19_48110445_48175344	48132790	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0018 a0001c0002t0001g0018	1	330	0.0030	13	c.172 others(30): Show c.1725+179_1725+191dupTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	18/27			chr19	TogoVar
LIG3_chr17_34975512_35014743	34977659	A A	ACACACAC others(6): Show ACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0189 a0001c0001t0013g0189	1	424	0.0024	13	c.-29 others(24): Show c.-2968_-2967insCACACACACACAC	LIG3	ENSG00000005156.12	transcript	ENST00000378526.9	protein_coding		2852		chr17	TogoVar
LILRA5_chr19_54302070_54318166	54304741	T T	TTTTTCTT others(6): Show TTTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0002 a0001c0001t0005g0002	1	409	0.0024	13	c.26 others(24): Show c.2671_*2672insGAAAGAAAGAAAA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2328		chr19	TogoVar
LILRA5_chr19_54302070_54318166	54304777	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	409	0.0024	13	c.26 others(24): Show c.2635_*2636insAGAAAGAAAGAAA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2292		chr19	TogoVar
LILRA5_chr19_54302070_54318166	54308354	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0085 a0001c0001t0010g0085	1	409	0.0024	13	c.713 others(28): Show c.713-607_713-606insATATATATATATA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6			chr19	TogoVar
LILRA6_chr19_54231590_54247790	54245003	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG02451.hp1 HG02451.hp2 others(21): Show HG01891.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02622.hp2 HG02647.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02922.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03540.hp1 HG03579.hp2 NA18522.hp1 NA19030.hp2 NA20805.hp1	a0004 a0005 a0011 others(3): Show a0004 a0005 a0011 a0015 a0035 a0041	a0004c0004 a0005c0006 a0005c0047 others(4): Show a0004c0004 a0005c0006 a0005c0047 a0011c0013 a0015c0010 a0035c0053 a0041c0067	a0004c0004t0006 a0004c0004t0020 a0004c0004t0062 others(12): Show a0004c0004t0006 a0004c0004t0020 a0004c0004t0062 a0005c0006t0001 a0005c0006t0015 a0005c0006t0021 a0005c0006t0026 a0005c0006t0038 a0005c0006t0039 a0005c0006t0042 a0005c0047t0015 a0011c0013t0004 a0015c0010t0018 a0035c0053t0060 a0041c0067t0011	a0004c0004t0006g0011 a0004c0004t0006g0163 a0004c0004t0020g0041 others(15): Show a0004c0004t0006g0011 a0004c0004t0006g0163 a0004c0004t0020g0041 a0004c0004t0062g0165 a0005c0006t0001g0112 a0005c0006t0015g0108 a0005c0006t0015g0111 a0005c0006t0015g0113 a0005c0006t0021g0107 a0005c0006t0026g0114 a0005c0006t0038g0106 a0005c0006t0039g0110 a0005c0006t0042g0109 a0005c0047t0015g0115 a0011c0013t0004g0161 a0015c0010t0018g0120 a0035c0053t0060g0186 a0041c0067t0011g0194	24	450	0.0533	13	c.-22 others(24): Show c.-2253_-2252insTTTTTTTTTTTTT	LILRA6	ENSG00000244482.11	transcript	ENST00000396365.7	protein_coding		2214		chr19	TogoVar
LILRA6_chr19_54231590_54247790	54246404	A A	ATATATAT others(6): Show ATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG02015.hp1 HG00280.hp1 HG02015.hp1	a0002 a0020 a0002 a0020	a0002c0002 a0020c0017 a0002c0002 a0020c0017	a0002c0002t0003 a0020c0017t0002 a0002c0002t0003 a0020c0017t0002	a0002c0002t0003g0002 a0020c0017t0002g0078 a0002c0002t0003g0002 a0020c0017t0002g0078	2	450	0.0044	13	c.-36 others(24): Show c.-3654_-3653insATATATATATATA	LILRA6	ENSG00000244482.11	transcript	ENST00000396365.7	protein_coding		3615		chr19	TogoVar
LILRA6_chr19_54231590_54247790	54246405	T T	TATATATA others(6): Show TATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG01099.hp1 HG01993.hp2 others(3): Show HG00639.hp2 HG01099.hp1 HG01993.hp2 HG02071.hp2 HG03927.hp2 NA18962.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0064 a0002c0002t0003 a0002c0002t0064	a0002c0002t0003g0002 a0002c0002t0003g0178 a0002c0002t0064g0170 a0002c0002t0003g0002 a0002c0002t0003g0178 a0002c0002t0064g0170	6	450	0.0133	13	c.-36 others(24): Show c.-3655_-3654insTATATATATATAT	LILRA6	ENSG00000244482.11	transcript	ENST00000396365.7	protein_coding		3616		chr19	TogoVar
LILRB4_chr19_54657985_54673718	54663443	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00597.hp1 HG00741.hp2 others(49): Show HG00438.hp1 HG00597.hp1 HG00741.hp2 HG01070.hp2 HG01099.hp1 HG01099.hp2 HG01168.hp2 HG01175.hp2 HG01255.hp1 HG01256.hp2 HG01361.hp2 HG01433.hp2 HG01515.hp1 HG02056.hp2 HG02129.hp2 HG02280.hp1 HG02280.hp2 HG02523.hp1 HG02572.hp2 HG03098.hp1 HG03453.hp2 HG03492.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03942.hp1 HG04204.hp1 HG06807.hp2 NA18747.hp2 NA18967.hp1 NA18975.hp2 NA18985.hp1 NA18988.hp1 NA19000.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp1 NA19056.hp2 NA19064.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp2 NA19078.hp2 NA19079.hp2 NA19085.hp1 NA19087.hp2 NA19088.hp2 NA19089.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(17): Show a0001 a0002 a0003 a0005 a0006 a0007 a0009 a0010 a0011 a0014 a0015 a0018 a0025 a0030 a0035 a0037 a0048 a0049 a0052 a0065	a0001c0016 a0002c0006 a0003c0003 others(18): Show a0001c0016 a0002c0006 a0003c0003 a0005c0015 a0006c0005 a0007c0007 a0009c0008 a0010c0013 a0010c0037 a0011c0014 a0014c0011 a0015c0026 a0018c0020 a0025c0035 a0030c0045 a0035c0049 a0037c0040 a0048c0078 a0049c0079 a0052c0083 a0065c0055	a0001c0016t0001 a0002c0006t0001 a0003c0003t0001 others(19): Show a0001c0016t0001 a0002c0006t0001 a0003c0003t0001 a0005c0015t0001 a0005c0015t0002 a0006c0005t0001 a0007c0007t0001 a0009c0008t0001 a0010c0013t0001 a0010c0037t0001 a0011c0014t0001 a0014c0011t0001 a0015c0026t0001 a0018c0020t0001 a0025c0035t0001 a0030c0045t0001 a0035c0049t0001 a0037c0040t0001 a0048c0078t0001 a0049c0079t0001 a0052c0083t0001 a0065c0055t0001	a0001c0016t0001g0038 a0001c0016t0001g0039 a0001c0016t0001g0122 others(35): Show a0001c0016t0001g0038 a0001c0016t0001g0039 a0001c0016t0001g0122 a0002c0006t0001g0007 a0002c0006t0001g0039 a0002c0006t0001g0123 a0002c0006t0001g0124 a0002c0006t0001g0125 a0002c0006t0001g0127 a0002c0006t0001g0128 a0002c0006t0001g0129 a0002c0006t0001g0130 a0003c0003t0001g0005 a0003c0003t0001g0007 a0005c0015t0001g0005 a0005c0015t0001g0075 a0005c0015t0001g0126 a0005c0015t0002g0005 a0006c0005t0001g0019 a0007c0007t0001g0028 a0007c0007t0001g0115 a0009c0008t0001g0019 a0009c0008t0001g0117 a0010c0013t0001g0119 a0010c0037t0001g0116 a0011c0014t0001g0118 a0014c0011t0001g0111 a0015c0026t0001g0038 a0015c0026t0001g0131 a0018c0020t0001g0112 a0025c0035t0001g0028 a0030c0045t0001g0113 a0035c0049t0001g0120 a0037c0040t0001g0040 a0048c0078t0001g0132 a0049c0079t0001g0005 a0052c0083t0001g0121 a0065c0055t0001g0114	52	487	0.1068	13	c.35- others(24): Show c.35-80_35-68dupAAAAAAAAAAAAA	LILRB4	ENSG00000186818.13	transcript	ENST00000695418.1	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr19	TogoVar
LILRB5_chr19_54244421_54262273	54245003	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG01891.hp2 HG02145.hp2 others(24): Show HG01884.hp1 HG01891.hp2 HG02145.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp2 HG02622.hp1 HG02647.hp2 HG02809.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02922.hp1 HG02976.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03540.hp2 HG03579.hp1 NA18522.hp2 NA19030.hp2 NA20805.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0003c0005 a0003c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 others(10): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0025 a0001c0001t0027 a0001c0001t0037 a0001c0002t0038 a0001c0003t0001 a0001c0003t0003 a0001c0007t0008 a0003c0005t0005 a0003c0013t0027	a0001c0001t0001g0001 a0001c0001t0003g0080 a0001c0001t0003g0123 others(14): Show a0001c0001t0001g0001 a0001c0001t0003g0080 a0001c0001t0003g0123 a0001c0001t0003g0161 a0001c0001t0008g0018 a0001c0001t0008g0033 a0001c0001t0008g0082 a0001c0001t0010g0097 a0001c0001t0025g0049 a0001c0001t0027g0098 a0001c0001t0037g0095 a0001c0002t0038g0114 a0001c0003t0001g0024 a0001c0003t0003g0006 a0001c0007t0008g0093 a0003c0005t0005g0005 a0003c0013t0027g0156	27	474	0.0570	13	c.57 others(24): Show c.5782_*5783insTTTTTTTTTTTTT	LILRB5	ENSG00000105609.17	transcript	ENST00000449561.3	protein_coding		4417		chr19	TogoVar
LILRB5_chr19_54244421_54262273	54246404	A A	ATATATAT others(6): Show ATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG01496.hp1 HG02015.hp2 HG00280.hp1 HG01496.hp1 HG02015.hp2	a0001 a0004 a0001 a0004	a0001c0002 a0004c0009 a0001c0002 a0004c0009	a0001c0002t0001 a0001c0002t0002 a0004c0009t0002 a0001c0002t0001 a0001c0002t0002 a0004c0009t0002	a0001c0002t0001g0106 a0001c0002t0002g0004 a0004c0009t0002g0016 a0001c0002t0001g0106 a0001c0002t0002g0004 a0004c0009t0002g0016	3	474	0.0063	13	c.43 others(24): Show c.4381_*4382insATATATATATATA	LILRB5	ENSG00000105609.17	transcript	ENST00000449561.3	protein_coding		3016		chr19	TogoVar
LILRB5_chr19_54244421_54262273	54246405	T T	TATATATA others(6): Show TATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp1 HG01099.hp2 HG01993.hp2 others(3): Show HG00639.hp1 HG01099.hp2 HG01993.hp2 HG02071.hp2 HG03927.hp2 NA18962.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0002c0004 a0004c0009 a0001c0002 a0002c0004 a0004c0009	a0001c0002t0002 a0002c0004t0024 a0004c0009t0002 a0001c0002t0002 a0002c0004t0024 a0004c0009t0002	a0001c0002t0002g0004 a0001c0002t0002g0011 a0002c0004t0024g0052 others(1): Show a0001c0002t0002g0004 a0001c0002t0002g0011 a0002c0004t0024g0052 a0004c0009t0002g0016	6	474	0.0127	13	c.43 others(24): Show c.4380_*4381insTATATATATATAT	LILRB5	ENSG00000105609.17	transcript	ENST00000449561.3	protein_coding		3015		chr19	TogoVar
LIMA1_chr12_50170788_50288520	50175363	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0107	1	294	0.0034	13	c.17 others(24): Show c.1700_*1701insTTTTTTTTTTTTT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding		424		chr12	TogoVar
LIMA1_chr12_50170788_50288520	50241933	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0123 a0001c0001t0004g0123	1	294	0.0034	13	c.119 others(30): Show c.119+6687_119+6699dupAAAAAAAAAAAAA	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	2/10			chr12	TogoVar
LIMA1_chr12_50170788_50288520	50261042	A A	ATATTTTT others(6): Show ATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0281 a0001c0002t0001g0281	1	294	0.0034	13	c.-23 others(32): Show c.-23-12269_-23-12268insAAAAAAAAAAATA	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	1/10			chr12	TogoVar
LIMCH1_chr4_41533157_41705044	41581146	C C	CTATCTAT others(6): Show CTATCTATCTATCT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01261.hp2 HG02109.hp1 others(4): Show HG01167.hp2 HG01261.hp2 HG02109.hp1 HG02451.hp1 HG02615.hp1 HG02809.hp1 NA18747.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0009	a0001c0001 a0001c0013 a0002c0002 others(4): Show a0001c0001 a0001c0013 a0002c0002 a0002c0030 a0003c0003 a0004c0005 a0009c0010	a0001c0001t0001 a0001c0013t0031 a0002c0002t0009 others(4): Show a0001c0001t0001 a0001c0013t0031 a0002c0002t0009 a0002c0030t0001 a0003c0003t0001 a0004c0005t0011 a0009c0010t0019	a0001c0001t0001g0051 a0001c0013t0031g0111 a0002c0002t0009g0086 others(4): Show a0001c0001t0001g0051 a0001c0013t0031g0111 a0002c0002t0009g0086 a0002c0030t0001g0089 a0003c0003t0001g0005 a0004c0005t0011g0146 a0009c0010t0019g0113	7	154	0.0455	13	c.-24 others(34): Show c.-240-17774_-240-17773insTATCTATCTATCT	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31			chr4	TogoVar
LIMCH1_chr4_41533157_41705044	41596048	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02630.hp1 HG03041.hp1 others(1): Show HG02615.hp1 HG02630.hp1 HG03041.hp1 HG03540.hp1	a0003 a0006 a0009 a0003 a0006 a0009	a0003c0003 a0006c0012 a0009c0010 a0003c0003 a0006c0012 a0009c0010	a0003c0003t0006 a0003c0003t0019 a0006c0012t0020 others(1): Show a0003c0003t0006 a0003c0003t0019 a0006c0012t0020 a0009c0010t0019	a0003c0003t0006g0068 a0003c0003t0019g0114 a0006c0012t0020g0110 others(1): Show a0003c0003t0006g0068 a0003c0003t0019g0114 a0006c0012t0020g0110 a0009c0010t0019g0113	4	154	0.0260	13	c.-24 others(32): Show c.-240-2871_-240-2859dupAAAAAAAAAAAAA	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIMCH1_chr4_41533157_41705044	41663852	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 NA19004.hp2 NA19009.hp2 HG02132.hp1 NA19004.hp2 NA19009.hp2	a0002 a0005 a0002 a0005	a0002c0002 a0005c0019 a0002c0002 a0005c0019	a0002c0002t0005 a0005c0019t0005 a0005c0019t0014 a0002c0002t0005 a0005c0019t0005 a0005c0019t0014	a0002c0002t0005g0030 a0005c0019t0005g0022 a0005c0019t0014g0149 a0002c0002t0005g0030 a0005c0019t0005g0022 a0005c0019t0014g0149	3	154	0.0195	13	c.329 others(30): Show c.3291+877_3291+889dupAAAAAAAAAAAAA	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	20/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIMD1_chr3_45589751_45691341	45686643	A A	ATATATAT others(6): Show ATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0159 a0001c0001t0159	a0001c0001t0159g0036 a0001c0001t0159g0036	1	358	0.0028	13	c.95 others(24): Show c.9584_*9585insTATATATATATAT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		303		chr3	TogoVar
LIMD1_chr3_45589751_45691341	45686663	A A	ATATTTTT others(6): Show ATATTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 NA19091.hp2 HG02717.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0074 a0001c0001t0018 a0001c0001t0074	a0001c0001t0018g0057 a0001c0001t0074g0135 a0001c0001t0018g0057 a0001c0001t0074g0135	2	358	0.0056	13	c.96 others(24): Show c.9604_*9605insTATTTTTTTTTTT	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding		323		chr3	TogoVar
LIMK1_chr7_74078804_74127525	74095968	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02027.hp2 HG02717.hp2 others(3): Show HG01884.hp1 HG02027.hp2 HG02717.hp2 NA18960.hp2 NA18987.hp1 NA19070.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0001c0001t0002 a0004c0005t0002 a0001c0001t0001 a0001c0001t0002 a0004c0005t0002	a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0002g0023 others(2): Show a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0002g0023 a0001c0001t0002g0028 a0004c0005t0002g0003	6	302	0.0199	13	c.153 others(28): Show c.153-652_153-640dupTTTTTTTTTTTTT	LIMK1	ENSG00000106683.15	transcript	ENST00000336180.7	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr7	TogoVar
LIMK2_chr22_31207298_31285080	31257040	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01516.hp1 HG01517.hp1 HG01123.hp1 HG01516.hp1 HG01517.hp1	a0001 a0003 a0001 a0003	a0001c0003 a0003c0006 a0001c0003 a0003c0006	a0001c0003t0003 a0003c0006t0001 a0001c0003t0003 a0003c0006t0001	a0001c0003t0003g0184 a0003c0006t0001g0210 a0003c0006t0001g0211 a0001c0003t0003g0184 a0003c0006t0001g0210 a0003c0006t0001g0211	3	358	0.0084	13	c.117 others(30): Show c.117-1229_117-1217dupTTTTTTTTTTTTT	LIMK2	ENSG00000182541.18	transcript	ENST00000331728.9	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr22	TogoVar
LIMS1_chr2_108529470_108692246	108552610	G G	GTGTGTGT others(6): Show GTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0236 a0001c0002t0004g0236	1	246	0.0041	13	c.32+ others(30): Show c.32+18019_32+18020insGTGTGTGTGTTGT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS1_chr2_108529470_108692246	108569764	C C	CCTTTTTT others(6): Show CCTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01361.hp1 HG01981.hp2 others(4): Show HG01167.hp2 HG01361.hp1 HG01981.hp2 HG03834.hp2 HG04184.hp2 NA19083.hp2 NA19088.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0016 a0001c0002t0001 a0001c0002t0016	a0001c0002t0001g0015 a0001c0002t0001g0025 a0001c0002t0001g0034 others(4): Show a0001c0002t0001g0015 a0001c0002t0001g0025 a0001c0002t0001g0034 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0052 a0001c0002t0016g0070	7	246	0.0285	13	c.32+ others(30): Show c.32+35170_32+35171insCTTTTTTTTTTTT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127648964	G G	GGGAGGGG others(6): Show GGGAGGGGAGGGGA	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0106 a0001c0002t0004g0106	1	348	0.0029	13	c.359 others(30): Show c.359+5459_359+5460insTCCCCTCCCCTCC	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	4/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668668	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0291 a0001c0001t0002g0291	1	348	0.0029	13	c.11+ others(28): Show c.11+6333_11+6345dupTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIN28B_chr6_104952107_105088332	105023074	A A	AAATACAG others(6): Show AAATACAGGGAGCT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0210 a0001c0001t0002g0210	1	278	0.0036	13	c.199 others(30): Show c.199-3220_199-3208dupACAGGGAGCTAAT	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LIN28B_chr6_104952107_105088332	105023533	T T	TATAATAT others(6): Show TATAATATATATAA	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0060 a0001c0001t0004g0060	1	278	0.0036	13	c.199 others(30): Show c.199-2764_199-2763insTAATATATATAAA	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LIN28B_chr6_104952107_105088332	105023534	A A	ATTTTATA others(6): Show ATTTTATATATTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02976.hp2 HG03098.hp2 others(6): Show HG01891.hp1 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03486.hp2 HG03516.hp1 HG03540.hp2 NA18959.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0001g0111 a0001c0001t0002g0007 a0001c0001t0003g0070 others(6): Show a0001c0001t0001g0111 a0001c0001t0002g0007 a0001c0001t0003g0070 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0052 a0001c0001t0004g0170 a0001c0001t0006g0169 a0001c0001t0006g0171	9	278	0.0324	13	c.199 others(30): Show c.199-2764_199-2763insTTTTATATATTTT	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding	2/3			chr6	TogoVar
LIN52_chr14_74079956_74206493	74130278	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03139.hp2 HG03579.hp2 HG01891.hp1 HG03139.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0223 a0001c0001t0011g0224 a0001c0001t0011g0225 a0001c0001t0011g0223 a0001c0001t0011g0224 a0001c0001t0011g0225	3	354	0.0085	13	c.283 others(32): Show c.283+29046_283+29058dupTTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74137498	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG03471.hp1 NA18940.hp1 others(8): Show HG02135.hp1 HG03471.hp1 NA18940.hp1 NA18963.hp1 NA18964.hp2 NA18975.hp2 NA18991.hp2 NA19009.hp1 NA19063.hp2 NA19072.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0022	a0001c0001t0002g0073 a0001c0001t0003g0017 a0001c0001t0003g0032 others(8): Show a0001c0001t0002g0073 a0001c0001t0003g0017 a0001c0001t0003g0032 a0001c0001t0003g0061 a0001c0001t0003g0072 a0001c0001t0003g0088 a0001c0001t0004g0021 a0001c0001t0004g0029 a0001c0001t0004g0037 a0001c0001t0022g0056 a0001c0001t0022g0075	11	354	0.0311	13	c.283 others(32): Show c.283+36266_283+36278dupTTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74165513	C C	CTTTTCTT others(6): Show CTTTTCTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01496.hp1 HG02145.hp1 others(5): Show HG01109.hp1 HG01496.hp1 HG02145.hp1 HG02258.hp1 HG02976.hp1 HG03130.hp1 HG03209.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0015 a0001c0001t0045	a0001c0001t0001g0191 a0001c0001t0002g0190 a0001c0001t0002g0192 others(5): Show a0001c0001t0001g0191 a0001c0001t0002g0190 a0001c0001t0002g0192 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0006g0194 a0001c0001t0015g0185 a0001c0001t0045g0188	8	354	0.0226	13	c.284 others(32): Show c.284-33405_284-33404insCTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74165513	C C	CTTTTTTT others(6): Show CTTTTTTTCTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0009	1	354	0.0028	13	c.284 others(32): Show c.284-33402_284-33401insCTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN52_chr14_74079956_74206493	74165513	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00544.hp1 HG00544.hp2 others(25): Show HG00438.hp1 HG00544.hp1 HG00544.hp2 HG01069.hp1 HG01074.hp2 HG02132.hp1 HG02155.hp2 HG02257.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp2 HG02698.hp1 HG03471.hp1 HG03669.hp1 HG03831.hp2 HG03942.hp2 HG04184.hp1 HG04204.hp2 NA18522.hp1 NA18941.hp1 NA18942.hp2 NA18956.hp2 NA18963.hp1 NA18971.hp1 NA18988.hp2 NA19063.hp1 NA19077.hp2 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(8): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0028 a0001c0001t0029 a0001c0001t0034	a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0003g0015 others(25): Show a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0003g0015 a0001c0001t0003g0032 a0001c0001t0003g0040 a0001c0001t0003g0050 a0001c0001t0003g0088 a0001c0001t0004g0026 a0001c0001t0004g0044 a0001c0001t0004g0049 a0001c0001t0004g0210 a0001c0001t0007g0004 a0001c0001t0007g0099 a0001c0001t0007g0103 a0001c0001t0007g0105 a0001c0001t0007g0108 a0001c0001t0007g0109 a0001c0001t0007g0114 a0001c0001t0007g0116 a0001c0001t0007g0122 a0001c0001t0010g0104 a0001c0001t0013g0120 a0001c0001t0013g0125 a0001c0001t0014g0203 a0001c0001t0016g0010 a0001c0001t0028g0101 a0001c0001t0029g0202 a0001c0001t0034g0119	28	354	0.0791	13	c.284 others(32): Show c.284-33406_284-33394dupTTTTTTTTTTTTT	LIN52	ENSG00000205659.12	transcript	ENST00000555028.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LIN54_chr4_82919603_83015823	82947235	A A	ATATATAT others(6): Show ATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0212 a0001c0001t0031g0212	1	304	0.0033	13	c.952 others(28): Show c.952-762_952-761insAAAAAAATATATA	LIN54	ENSG00000189308.11	transcript	ENST00000340417.8	protein_coding	4/12			chr4	TogoVar
LIN54_chr4_82919603_83015823	82947235	A A	ATATATTT others(6): Show ATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0054 a0001c0001t0001g0054	1	304	0.0033	13	c.952 others(28): Show c.952-762_952-761insAAAAAAAAATATA	LIN54	ENSG00000189308.11	transcript	ENST00000340417.8	protein_coding	4/12			chr4	TogoVar

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