Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRPPRC_chr2_43881224_44000989	43971485	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01074.hp1 HG01099.hp2 others(15): Show HG00741.hp2 HG01074.hp1 HG01099.hp2 HG01109.hp2 HG01175.hp2 HG01516.hp1 HG02055.hp2 HG02145.hp1 HG02280.hp1 HG02572.hp1 HG02683.hp2 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02886.hp2 HG03098.hp1 HG03139.hp2 HG03516.hp2	a0001 a0004 a0005 others(2): Show a0001 a0004 a0005 a0012 a0013	a0001c0003 a0001c0018 a0004c0004 others(3): Show a0001c0003 a0001c0018 a0004c0004 a0005c0011 a0012c0015 a0013c0016	a0001c0003t0002 a0001c0003t0043 a0001c0018t0007 others(5): Show a0001c0003t0002 a0001c0003t0043 a0001c0018t0007 a0004c0004t0012 a0004c0004t0019 a0005c0011t0002 a0012c0015t0044 a0013c0016t0008	a0001c0003t0002g0065 a0001c0003t0002g0066 a0001c0003t0002g0071 others(15): Show a0001c0003t0002g0065 a0001c0003t0002g0066 a0001c0003t0002g0071 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0003t0002g0079 a0001c0003t0002g0080 a0001c0003t0002g0081 a0001c0003t0002g0085 a0001c0003t0043g0067 a0001c0018t0007g0088 a0004c0004t0012g0104 a0004c0004t0019g0105 a0004c0004t0019g0106 a0005c0011t0002g0341 a0005c0011t0002g0342 a0012c0015t0044g0082 a0013c0016t0008g0007	18	358	0.0503	13	c.136 others(32): Show c.1369+2109_1369+2121dupTTTTTTTTTTTTT	LRPPRC	ENSG00000138095.20	transcript	ENST00000260665.12	protein_coding	11/37			chr2	TogoVar
LRR1_chr14_49593940_49619672	49609230	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTC	intron_variant intron_variant	MODIFIER	HG03139.hp1 NA18955.hp2 NA19076.hp1 HG03139.hp1 NA18955.hp2 NA19076.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0123 a0002c0002t0001g0124 a0002c0002t0001g0262 a0002c0002t0001g0123 a0002c0002t0001g0124 a0002c0002t0001g0262	3	312	0.0096	13	c.100 others(32): Show c.1004+1121_1004+1122insCTTTTTTTTTTTT	LRR1	ENSG00000165501.17	transcript	ENST00000298288.11	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC10_chr12_69603564_69615907	69614652	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02148.hp2 HG02257.hp2 others(6): Show HG02145.hp1 HG02148.hp2 HG02257.hp2 HG02300.hp1 HG02886.hp2 HG03516.hp1 HG06807.hp1 NA18955.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0001 a0001c0001t0002 a0001c0001t0005	a0001c0001t0001g0000 a0001c0001t0002g0000 a0001c0001t0005g0000 a0001c0001t0001g0000 a0001c0001t0002g0000 a0001c0001t0005g0000	9	430	0.0209	13	c.-38 others(24): Show c.-3815_-3814insAAAAAAAAAAAAA	LRRC10	ENSG00000198812.5	transcript	ENST00000361484.5	protein_coding		3746		chr12	TogoVar
LRRC19_chr9_26988136_27010672	27005352	T T	TCCCCCGC others(6): Show TCCCCCGCCCCCCC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0212 a0001c0001t0002g0212	1	390	0.0026	13	c.-10 others(28): Show c.-10+239_-10+240insGGGGGGGCGGGGG	LRRC19	ENSG00000184434.8	transcript	ENST00000380055.6	protein_coding	1/4			chr9	TogoVar
LRRC1_chr6_53790005_53929125	53900020	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0154	1	370	0.0027	13	c.787 others(28): Show c.787+150_787+162dupTTTTTTTTTTTTT	LRRC1	ENSG00000137269.15	transcript	ENST00000370888.6	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr6	TogoVar
LRRC20_chr10_70293975_70387625	70311222	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01433.hp1 HG01978.hp2 others(19): Show HG01255.hp1 HG01433.hp1 HG01978.hp2 HG02074.hp1 HG02523.hp1 HG03471.hp1 HG04115.hp2 NA18522.hp1 NA18952.hp1 NA18963.hp2 NA18971.hp1 NA18983.hp1 NA18992.hp1 NA18997.hp1 NA18998.hp2 NA19000.hp2 NA19003.hp1 NA19009.hp1 NA19058.hp2 NA19064.hp1 NA19067.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0011 a0001c0001t0019 a0001c0001t0028 a0001c0001t0036	a0001c0001t0001g0277 a0001c0001t0001g0281 a0001c0001t0001g0294 others(19): Show a0001c0001t0001g0277 a0001c0001t0001g0281 a0001c0001t0001g0294 a0001c0001t0001g0296 a0001c0001t0001g0303 a0001c0001t0001g0306 a0001c0001t0001g0309 a0001c0001t0001g0311 a0001c0001t0001g0313 a0001c0001t0001g0318 a0001c0001t0002g0106 a0001c0001t0002g0107 a0001c0001t0002g0112 a0001c0001t0002g0123 a0001c0001t0002g0155 a0001c0001t0003g0013 a0001c0001t0003g0110 a0001c0001t0006g0335 a0001c0001t0011g0261 a0001c0001t0019g0038 a0001c0001t0028g0067 a0001c0001t0036g0213	22	378	0.0582	13	c.401 others(30): Show c.401-9727_401-9715dupAAAAAAAAAAAAA	LRRC20	ENSG00000172731.15	transcript	ENST00000446961.4	protein_coding	4/4			chr10	TogoVar
LRRC20_chr10_70293975_70387625	70372218	A A	AAAATCTG others(6): Show AAAATCTGTTCCCT	intron_variant intron_variant	MODIFIER	NA18988.hp2 NA18988.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0227 a0001c0001t0014g0227	1	378	0.0027	13	c.82+ others(28): Show c.82+4221_82+4233dupAGGGAACAGATTT	LRRC20	ENSG00000172731.15	transcript	ENST00000446961.4	protein_coding	2/4			chr10	TogoVar
LRRC23_chr12_6899822_6919229	6901494	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG02572.hp1 HG02615.hp2 others(6): Show HG00741.hp2 HG02572.hp1 HG02615.hp2 HG02818.hp1 HG03516.hp1 NA18522.hp2 NA18981.hp2 NA19240.hp2 NA21309.hp1	a0002 a0004 a0005 a0002 a0004 a0005	a0002c0002 a0004c0004 a0005c0005 a0002c0002 a0004c0004 a0005c0005	a0002c0002t0002 a0002c0002t0003 a0004c0004t0005 others(1): Show a0002c0002t0002 a0002c0002t0003 a0004c0004t0005 a0005c0005t0003	a0002c0002t0002g0043 a0002c0002t0002g0046 a0002c0002t0002g0047 others(5): Show a0002c0002t0002g0043 a0002c0002t0002g0046 a0002c0002t0002g0047 a0002c0002t0002g0048 a0002c0002t0002g0202 a0002c0002t0003g0019 a0004c0004t0005g0186 a0005c0005t0003g0193	9	316	0.0285	13	c.-36 others(24): Show c.-3631_-3630insAAAAAAAAAAAAA	LRRC23	ENSG00000010626.15	transcript	ENST00000443597.7	protein_coding		3327		chr12	TogoVar
LRRC25_chr19_18386137_18402622	18387813	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp1 HG02976.hp2 HG02976.hp1 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0012 a0001c0001t0004g0009 a0001c0001t0004g0012	2	434	0.0046	13	c.41 others(24): Show c.4161_*4173dupAAAAAAAAAAAAA	LRRC25	ENSG00000175489.10	transcript	ENST00000339007.4	protein_coding		3323		chr19	TogoVar
LRRC28_chr15_99246481_99395729	99289939	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA19065.hp1 HG02083.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0226 a0001c0001t0010g0227 a0001c0001t0010g0226 a0001c0001t0010g0227	2	332	0.0060	13	c.385 others(30): Show c.385+2000_385+2012dupAAAAAAAAAAAAA	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC28_chr15_99246481_99395729	99293593	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02129.hp2 HG02273.hp2 others(5): Show HG02004.hp1 HG02129.hp2 HG02273.hp2 HG04115.hp1 NA18943.hp2 NA18954.hp2 NA18963.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0090 others(3): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0090 a0001c0001t0109 a0001c0001t0174 a0001c0001t0196	a0001c0001t0003g0167 a0001c0001t0003g0173 a0001c0001t0005g0123 others(5): Show a0001c0001t0003g0167 a0001c0001t0003g0173 a0001c0001t0005g0123 a0001c0001t0005g0124 a0001c0001t0090g0110 a0001c0001t0109g0100 a0001c0001t0174g0187 a0001c0001t0196g0197	8	332	0.0241	13	c.385 others(30): Show c.385+5670_385+5682dupAAAAAAAAAAAAA	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC28_chr15_99246481_99395729	99293593	C C	CCAAAAAA others(6): Show CCAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02895.hp1 HG02897.hp1 others(1): Show HG01192.hp1 HG02895.hp1 HG02897.hp1 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0025 a0001c0001t0194 a0001c0001t0005 a0001c0001t0025 a0001c0001t0194	a0001c0001t0005g0136 a0001c0001t0025g0001 a0001c0001t0194g0149 a0001c0001t0005g0136 a0001c0001t0025g0001 a0001c0001t0194g0149	4	332	0.0121	13	c.385 others(30): Show c.385+5642_385+5643insCAAAAAAAAAAAA	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9			chr15	TogoVar
LRRC2_chr3_46510385_46571302	46569181	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02293.hp2 HG02970.hp1 NA18977.hp1 others(1): Show HG02293.hp2 HG02970.hp1 NA18977.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0014	a0001c0001t0001g0252 a0001c0001t0003g0264 a0001c0001t0008g0323 others(1): Show a0001c0001t0001g0252 a0001c0001t0003g0264 a0001c0001t0008g0323 a0001c0001t0014g0243	4	364	0.0110	13	c.-30 others(24): Show c.-3037_-3025dupTTTTTTTTTTTTT	LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding		2880		chr3	TogoVar
LRRC31_chr3_169834172_169874935	169835364	C C	CTTGTGTG others(6): Show CTTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0172 a0001c0001t0001g0172	1	322	0.0031	13	c.46 others(24): Show c.4617_*4618insCACACACACACAA	LRRC31	ENSG00000114248.10	transcript	ENST00000316428.10	protein_coding		3807		chr3	TogoVar
LRRC36_chr16_67321815_67390204	67331069	A A	AGAGAGAG others(6): Show AGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0052 a0002c0002t0002g0052	1	194	0.0052	13	c.70+ others(28): Show c.70+4137_70+4138insGAGAGAGAGAGAG	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13			chr16	TogoVar
LRRC37A2_chr17_46507468_46560646	46558062	G G	GTTTTTTT others(6): Show GTTTTTTTTTCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0002 a0006c0006t0002	a0006c0006t0002g0072 a0006c0006t0002g0072	1	109	0.0092	13	c.24 others(24): Show c.2483_*2484insTTTTTTTTTCTTT	LRRC37A2	ENSG00000238083.10	transcript	ENST00000576629.6	protein_coding		2417		chr17	TogoVar
LRRC38_chr1_13469973_13519003	13472586	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG02723.hp1 NA19062.hp1 HG00544.hp1 HG02723.hp1 NA19062.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0004 a0002c0002 a0003c0004	a0002c0002t0002 a0002c0002t0008 a0003c0004t0001 a0002c0002t0002 a0002c0002t0008 a0003c0004t0001	a0002c0002t0002g0337 a0002c0002t0008g0028 a0003c0004t0001g0101 a0002c0002t0002g0337 a0002c0002t0008g0028 a0003c0004t0001g0101	3	448	0.0067	13	c.32 others(24): Show c.3259_*3260insAAAAAAAAAAAAA	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding		2386		chr1	TogoVar
LRRC38_chr1_13469973_13519003	13488032	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0417 a0001c0001t0001g0417	1	448	0.0022	13	c.632 others(32): Show c.632-11934_632-11933insCACACACACACAC	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1			chr1	TogoVar
LRRC3B_chr3_26617772_26715776	26643015	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02155.hp2 NA18972.hp2 HG02145.hp1 HG02155.hp2 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0087 a0001c0001t0001g0364 a0001c0002t0002g0262 a0001c0001t0001g0087 a0001c0001t0001g0364 a0001c0002t0002g0262	3	370	0.0081	13	c.-16 others(34): Show c.-161+19788_-161+19789insAAAAAAAAAAAAA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC41_chr1_46272462_46308616	46291304	T T	TACTATAA others(6): Show TACTATAAATTCTA	intron_variant intron_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0204 a0002c0002t0002g0204	1	370	0.0027	13	c.358 others(30): Show c.358-4818_358-4806dupTAGAATTTATAGT	LRRC41	ENSG00000132128.18	transcript	ENST00000617190.5	protein_coding	3/9			chr1	TogoVar
LRRC41_chr1_46272462_46308616	46291552	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0158 a0001c0001t0001g0158	1	370	0.0027	13	c.358 others(30): Show c.358-5066_358-5054dupAAAAAAAAAAAAA	LRRC41	ENSG00000132128.18	transcript	ENST00000617190.5	protein_coding	3/9			chr1	TogoVar
LRRC41_chr1_46272462_46308616	46300394	T T	TTATCTTT others(6): Show TTATCTTTACTTAC	intron_variant intron_variant	MODIFIER	NA19059.hp1 NA19059.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0113 a0002c0002t0002g0113	1	370	0.0027	13	c.200 others(30): Show c.200-2037_200-2025dupGTAAGTAAAGATA	LRRC41	ENSG00000132128.18	transcript	ENST00000617190.5	protein_coding	1/9			chr1	TogoVar
LRRC45_chr17_82018305_82036151	82026564	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0051 a0001c0001t0001g0051	1	408	0.0025	13	c.662 others(28): Show c.662-335_662-334insGTGTGTGTGTGTG	LRRC45	ENSG00000169683.8	transcript	ENST00000306688.8	protein_coding	5/16			chr17	TogoVar
LRRC47_chr1_3773559_3801498	3779963	T T	TTTCCCCC others(6): Show TTTCCCCCCAAGAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0189 a0001c0001t0022g0189	1	412	0.0024	13	c.11 others(24): Show c.1124_*1125insTTCTTGGGGGGAA	LRRC47	ENSG00000130764.10	transcript	ENST00000378251.3	protein_coding	7/7	1124		chr1	TogoVar
LRRC49_chr15_70887826_71058658	71002939	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0158 a0002c0008t0001g0158	1	262	0.0038	13	c.117 others(32): Show c.1170-5426_1170-5414dupTTTTTTTTTTTTT	LRRC49	ENSG00000137821.12	transcript	ENST00000260382.10	protein_coding	11/15		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC4B_chr19_50511892_50573435	50567511	C C	CCCCCCAC others(6): Show CCCCCCACCCCAAG	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	360	0.0028	13	c.-36 others(28): Show c.-36+432_-36+433insCTTGGGGTGGGGG	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40382683	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	48	0.0208	13	c.-26 others(34): Show c.-269-62963_-269-62962insAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41051520	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	48	0.0208	13	c.-49 others(36): Show c.-495-117810_-495-117798dupTTTTTTTTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41059210	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	48	0.0208	13	c.-49 others(36): Show c.-495-125500_-495-125488dupAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41065083	T T	TGAGCCAG others(6): Show TGAGCCAGGGAGCC	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01261.hp1 HG02055.hp1 others(19): Show HG01074.hp2 HG01261.hp1 HG02055.hp1 HG02280.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp2 HG02717.hp2 HG02809.hp2 HG02896.hp2 HG02965.hp1 HG02970.hp1 HG03098.hp1 HG03139.hp2 HG03453.hp1 HG03453.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 NA18906.hp1 NA18989.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0002c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 others(19): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0025 a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0040 a0001c0001t0001g0044 a0001c0001t0001g0048 a0001c0001t0002g0026 a0001c0001t0002g0032 a0001c0001t0002g0036 a0001c0002t0001g0001 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0022 a0001c0002t0001g0024 a0001c0002t0001g0045 a0002c0003t0001g0017	22	48	0.4583	13	c.-49 others(36): Show c.-495-131373_-495-131361dupGGCTCCCTGGCTC	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41075009	A A	ATTTTCTT others(6): Show ATTTTCTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0012 a0001c0002t0002g0012	1	48	0.0208	13	c.-49 others(36): Show c.-495-141299_-495-141287dupAAAAAAAAGAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41075014	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02055.hp2 HG02622.hp1 others(11): Show HG01074.hp1 HG02055.hp2 HG02622.hp1 HG02809.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG03225.hp1 HG03225.hp2 HG03579.hp2 NA18989.hp1 NA19030.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0013 others(11): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0028 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0047 a0001c0001t0002g0009 a0001c0001t0002g0034 a0001c0001t0002g0043 a0001c0002t0001g0011 a0001c0002t0001g0021 a0001c0002t0001g0029 a0001c0002t0002g0008	14	48	0.2917	13	c.-49 others(36): Show c.-495-141292_-495-141291insTAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41163284	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02698.hp2 HG01261.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0032 a0001c0002t0002g0012 a0001c0001t0002g0032 a0001c0002t0002g0012	2	48	0.0417	13	c.-49 others(36): Show c.-495-229574_-495-229562dupAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41281042	T T	TCTCTCTC others(6): Show TCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	48	0.0208	13	c.-49 others(36): Show c.-496+178388_-496+178389insGAGAGAGAGAGAG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41408756	A A	AAAAAAAA others(6): Show AAAAAAAAACAAAC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0043 a0001c0001t0002g0043	1	48	0.0208	13	c.-49 others(34): Show c.-496+50674_-496+50675insGTTTGTTTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41408760	A A	AAAAACAA others(6): Show AAAAACAAACAAAC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02622.hp1 HG02717.hp2 others(2): Show HG01261.hp2 HG02622.hp1 HG02717.hp2 HG02965.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0002g0009 others(2): Show a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0002g0009 a0001c0002t0001g0010 a0001c0002t0001g0011	5	48	0.1042	13	c.-49 others(34): Show c.-496+50670_-496+50671insGTTTGTTTGTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41411142	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	48	0.0208	13	c.-49 others(34): Show c.-496+48276_-496+48288dupAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC53_chr1_74464376_74517611	74486201	A A	AGAGAGAG others(6): Show AGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG03927.hp2 NA18947.hp2 others(1): Show HG00735.hp1 HG03927.hp2 NA18947.hp2 NA18949.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0007 a0001c0001 a0007c0007	a0001c0001t0001 a0007c0007t0001 a0001c0001t0001 a0007c0007t0001	a0001c0001t0001g0098 a0001c0001t0001g0227 a0001c0001t0001g0261 others(1): Show a0001c0001t0001g0098 a0001c0001t0001g0227 a0001c0001t0001g0261 a0007c0007t0001g0156	4	342	0.0117	13	c.-26 others(30): Show c.-26-2827_-26-2826insCTCTCTCTCTCTC	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC56_chr11_532527_559912	542580	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02896.hp1 HG02897.hp2 others(2): Show HG02451.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp2 HG06807.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0012 a0003c0003t0006g0025 a0003c0003t0006g0012 a0003c0003t0006g0025	5	387	0.0129	13	c.265 others(28): Show c.265+968_265+980dupAAAAAAAAAAAAA	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC57_chr15_42532829_42553793	42544836	C C	CTATATAT others(6): Show CTATATATATATAT	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02897.hp1 NA19043.hp1 HG01981.hp1 HG02897.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0037 a0001c0001t0007 a0001c0001t0037	a0001c0001t0007g0033 a0001c0001t0037g0153 a0001c0001t0007g0033 a0001c0001t0037g0153	3	356	0.0084	13	c.678 others(28): Show c.678+240_678+241insATATATATATATA	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC58_chr3_120319509_120354354	120347379	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02257.hp1 HG04204.hp2 others(3): Show HG02015.hp2 HG02257.hp1 HG04204.hp2 NA18612.hp2 NA18948.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0014 a0001c0001t0001g0139 a0001c0001t0001g0140	6	376	0.0160	13	c.500 others(30): Show c.500+1352_500+1364dupAAAAAAAAAAAAA	LRRC58	ENSG00000163428.4	transcript	ENST00000295628.4	protein_coding	1/3			chr3	TogoVar
LRRC61_chr7_150318355_150343156	150335684	G G	GAGACTCC others(6): Show GAGACTCCTGGGTC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01891.hp2 HG02055.hp2 others(4): Show HG00735.hp1 HG01891.hp2 HG02055.hp2 HG02976.hp2 HG03209.hp2 NA18906.hp1 NA19240.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0012 a0002c0002t0006g0071 a0002c0002t0006g0072 a0002c0002t0006g0012 a0002c0002t0006g0071 a0002c0002t0006g0072	7	386	0.0181	13	c.-14 others(32): Show c.-144-1033_-144-1021dupAGACTCCTGGGTC	LRRC61	ENSG00000127399.15	transcript	ENST00000359623.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(6): Show ATATATATATATTT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0091 a0002c0002t0001g0091	1	318	0.0031	13	c.652 others(32): Show c.652-13387_652-13386insATATATATATTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(6): Show ATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00735.hp1 HG01106.hp2 others(7): Show HG00408.hp1 HG00735.hp1 HG01106.hp2 HG02602.hp2 HG02698.hp2 HG02738.hp2 HG03704.hp2 NA18957.hp1 NA18980.hp2 NA18993.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0077 a0002c0002t0001g0078 a0002c0002t0001g0081 others(7): Show a0002c0002t0001g0077 a0002c0002t0001g0078 a0002c0002t0001g0081 a0002c0002t0001g0095 a0002c0002t0001g0105 a0002c0002t0001g0106 a0002c0002t0001g0107 a0002c0002t0001g0120 a0002c0002t0001g0132 a0002c0002t0001g0138	10	318	0.0315	13	c.652 others(32): Show c.652-13387_652-13386insATATATATTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(6): Show ATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00741.hp1 HG01071.hp2 others(30): Show HG00140.hp1 HG00741.hp1 HG01071.hp2 HG01074.hp1 HG01109.hp2 HG01515.hp2 HG01516.hp2 HG01517.hp2 HG01884.hp2 HG02004.hp2 HG02056.hp1 HG03942.hp1 NA18939.hp1 NA18945.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18964.hp2 NA18970.hp2 NA18973.hp2 NA18984.hp1 NA19000.hp2 NA19001.hp1 NA19001.hp2 NA19006.hp1 NA19010.hp2 NA19011.hp1 NA19054.hp2 NA19058.hp2 NA19060.hp2 NA19083.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0115 a0001c0001t0001g0117 a0002c0002t0001g0002 others(29): Show a0001c0001t0001g0115 a0001c0001t0001g0117 a0002c0002t0001g0002 a0002c0002t0001g0013 a0002c0002t0001g0014 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0017 a0002c0002t0001g0018 a0002c0002t0001g0019 a0002c0002t0001g0022 a0002c0002t0001g0023 a0002c0002t0001g0064 a0002c0002t0001g0079 a0002c0002t0001g0080 a0002c0002t0001g0083 a0002c0002t0001g0086 a0002c0002t0001g0090 a0002c0002t0001g0096 a0002c0002t0001g0101 a0002c0002t0001g0102 a0002c0002t0001g0104 a0002c0002t0001g0109 a0002c0002t0001g0110 a0002c0002t0001g0118 a0002c0002t0001g0122 a0002c0002t0001g0123 a0002c0002t0001g0125 a0002c0002t0001g0207 a0002c0002t0001g0273 a0002c0002t0001g0274 a0002c0002t0001g0275	33	318	0.1038	13	c.652 others(32): Show c.652-13387_652-13386insATATATTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATTT others(6): Show ATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02717.hp2 HG02723.hp2 others(12): Show HG01934.hp1 HG02717.hp2 HG02723.hp2 HG02895.hp2 HG02897.hp2 HG03195.hp2 HG03834.hp1 NA18953.hp1 NA18969.hp2 NA18989.hp1 NA19002.hp1 NA19068.hp2 NA19084.hp1 NA20129.hp2 NA20300.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0005 a0002c0002t0001g0012 a0002c0002t0001g0021 others(11): Show a0002c0002t0001g0005 a0002c0002t0001g0012 a0002c0002t0001g0021 a0002c0002t0001g0068 a0002c0002t0001g0070 a0002c0002t0001g0075 a0002c0002t0001g0082 a0002c0002t0001g0087 a0002c0002t0001g0094 a0002c0002t0001g0100 a0002c0002t0001g0103 a0002c0002t0001g0129 a0002c0002t0001g0141 a0002c0002t0001g0311	15	318	0.0472	13	c.652 others(32): Show c.652-13387_652-13386insATATTTTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATTTTT others(6): Show ATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01099.hp2 NA18949.hp1 HG01099.hp2 NA18949.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0056 a0002c0002t0001g0063 a0002c0002t0001g0056 a0002c0002t0001g0063	2	318	0.0063	13	c.652 others(32): Show c.652-13387_652-13386insATTTTTTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC71_chr1_156915632_156938094	156930064	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp2 HG02647.hp2 others(2): Show HG02258.hp1 HG02630.hp2 HG02647.hp2 HG03453.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0217 a0001c0001t0001g0218 others(1): Show a0001c0001t0001g0041 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219	5	402	0.0124	13	c.124 others(30): Show c.1240+351_1240+363dupTCTTTCTTTCTTT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	11/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156935192	A A	ATGAGGGG others(6): Show ATGAGGGGGGGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0150 a0001c0003t0001g0150	1	402	0.0025	13	c.22 others(24): Show c.2223_*2224insTGAGGGGGGGAAG	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		2099		chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936495	A A	ATATATAT others(6): Show ATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp2 HG03669.hp2 HG01515.hp2 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0008 a0001c0001t0001g0040	2	402	0.0050	13	c.35 others(24): Show c.3526_*3527insTATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3402		chr1	TogoVar

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