Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC72_chr7_16521825_16586568	16564386	T T	TTTAAAAT others(6): Show TTTAAAATCTGTCC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01074.hp1 HG01109.hp1 others(30): Show HG00639.hp1 HG01074.hp1 HG01109.hp1 HG01891.hp2 HG02486.hp1 HG02559.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02723.hp1 HG02723.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03516.hp2 HG06807.hp2 NA18906.hp1 NA19030.hp2 NA19240.hp2 NA20129.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0011 others(22): Show a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0027 a0001c0001t0001g0062 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0095 a0001c0001t0001g0098 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0169 a0001c0001t0001g0197 a0001c0001t0001g0200 a0001c0001t0001g0226 a0001c0001t0001g0267 a0001c0001t0001g0295 a0001c0001t0001g0300 a0001c0001t0001g0302 a0001c0001t0001g0303 a0001c0001t0001g0306 a0002c0002t0001g0038 a0002c0002t0001g0289	33	410	0.0805	13	c.428 others(30): Show c.428-1924_428-1923insAAATCTGTCCTTA	LRRC72	ENSG00000205858.10	transcript	ENST00000401542.3	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
LRRC74A_chr14_76821408_76875304	76853430	G G	GTGTGTGT others(6): Show GTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0332 a0001c0001t0001g0332	1	408	0.0025	13	c.957 others(26): Show c.957+20_957+21insTGTGTGTGTGTGT	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	9/13			chr14	TogoVar
LRRC75A_chr17_16436577_16497193	16450434	A A	ACCCCTGC others(6): Show ACCCCTGCCCCCAG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp1 HG00642.hp2 others(96): Show HG00323.hp2 HG00597.hp1 HG00642.hp2 HG00733.hp1 HG00741.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp2 HG01257.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01952.hp1 HG02055.hp1 HG02055.hp2 HG02071.hp2 HG02074.hp1 HG02132.hp1 HG02148.hp2 HG02258.hp1 HG02273.hp1 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02717.hp1 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02970.hp2 HG03017.hp2 HG03041.hp2 HG03139.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03688.hp1 HG03704.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18941.hp2 NA18942.hp1 NA18944.hp2 NA18946.hp1 NA18947.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18961.hp1 NA18962.hp2 NA18964.hp1 NA18966.hp1 NA18970.hp2 NA18971.hp2 NA18973.hp1 NA18973.hp2 NA18995.hp2 NA18999.hp1 NA19000.hp1 NA19004.hp2 NA19012.hp1 NA19055.hp2 NA19065.hp2 NA19066.hp2 NA19074.hp2 NA19077.hp1 NA19080.hp2 NA19081.hp2 NA19090.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 others(8): Show a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0002t0001 a0001c0002t0007 a0001c0002t0008 a0001c0002t0017 a0001c0002t0021	a0001c0001t0008g0050 a0001c0001t0010g0035 a0001c0001t0010g0252 others(91): Show a0001c0001t0008g0050 a0001c0001t0010g0035 a0001c0001t0010g0252 a0001c0001t0010g0289 a0001c0001t0010g0299 a0001c0001t0011g0036 a0001c0001t0011g0039 a0001c0001t0011g0073 a0001c0001t0015g0018 a0001c0001t0016g0019 a0001c0001t0018g0097 a0001c0002t0001g0004 a0001c0002t0001g0005 a0001c0002t0001g0014 a0001c0002t0001g0034 a0001c0002t0001g0038 a0001c0002t0001g0040 a0001c0002t0001g0041 a0001c0002t0001g0070 a0001c0002t0001g0079 a0001c0002t0001g0080 a0001c0002t0001g0091 a0001c0002t0001g0093 a0001c0002t0001g0101 a0001c0002t0001g0103 a0001c0002t0001g0104 a0001c0002t0001g0105 a0001c0002t0001g0107 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0110 a0001c0002t0001g0118 a0001c0002t0001g0119 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0123 a0001c0002t0001g0125 a0001c0002t0001g0132 a0001c0002t0001g0135 a0001c0002t0001g0144 a0001c0002t0001g0146 a0001c0002t0001g0149 a0001c0002t0001g0150 a0001c0002t0001g0151 a0001c0002t0001g0152 a0001c0002t0001g0156 a0001c0002t0001g0157 a0001c0002t0001g0159 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0167 a0001c0002t0001g0170 a0001c0002t0001g0171 a0001c0002t0001g0172 a0001c0002t0001g0173 a0001c0002t0001g0174 a0001c0002t0001g0196 a0001c0002t0001g0204 a0001c0002t0001g0207 a0001c0002t0001g0208 a0001c0002t0001g0215 a0001c0002t0001g0222 a0001c0002t0001g0225 a0001c0002t0001g0236 a0001c0002t0001g0237 a0001c0002t0001g0238 a0001c0002t0001g0239 a0001c0002t0001g0243 a0001c0002t0001g0244 a0001c0002t0001g0245 a0001c0002t0001g0247 a0001c0002t0001g0248 a0001c0002t0001g0250 a0001c0002t0001g0253 a0001c0002t0001g0257 a0001c0002t0001g0261 a0001c0002t0001g0262 a0001c0002t0001g0266 a0001c0002t0001g0268 a0001c0002t0001g0271 a0001c0002t0001g0274 a0001c0002t0001g0275 a0001c0002t0001g0293 a0001c0002t0001g0297 a0001c0002t0001g0302 a0001c0002t0001g0303 a0001c0002t0007g0126 a0001c0002t0007g0224 a0001c0002t0007g0234 a0001c0002t0007g0294 a0001c0002t0008g0235 a0001c0002t0008g0246 a0001c0002t0017g0242 a0001c0002t0021g0158	99	342	0.2895	13	c.376 others(30): Show c.376-2487_376-2475dupCTGGGGGCAGGGG	LRRC75A	ENSG00000181350.12	transcript	ENST00000470794.2	protein_coding	2/3			chr17	TogoVar
LRRC75A_chr17_16436577_16497193	16476682	C C	CTACAAAA others(6): Show CTACAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18986.hp2 NA18986.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0012 a0001c0007t0012	a0001c0007t0012g0200 a0001c0007t0012g0200	1	342	0.0029	13	c.247 others(32): Show c.247-14297_247-14296insTTTTTTTTTTGTA	LRRC75A	ENSG00000181350.12	transcript	ENST00000470794.2	protein_coding	1/3			chr17	TogoVar
LRRC7_chr1_69562922_70149364	69617547	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01978.hp1 HG02257.hp2 others(1): Show HG01515.hp1 HG01978.hp1 HG02257.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0014 others(1): Show a0001c0001t0005 a0001c0001t0007 a0001c0001t0014 a0001c0001t0015	a0001c0001t0005g0108 a0001c0001t0007g0104 a0001c0001t0014g0085 others(1): Show a0001c0001t0005g0108 a0001c0001t0007g0104 a0001c0001t0014g0085 a0001c0001t0015g0086	4	108	0.0370	13	c.2+4 others(28): Show c.2+48919_2+48931dupAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69650539	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02976.hp1 NA19240.hp2 HG02145.hp1 HG02976.hp1 NA19240.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0013 a0001c0001 a0005c0013	a0001c0001t0002 a0001c0001t0016 a0005c0013t0010 a0001c0001t0002 a0001c0001t0016 a0005c0013t0010	a0001c0001t0002g0103 a0001c0001t0016g0032 a0005c0013t0010g0061 a0001c0001t0002g0103 a0001c0001t0016g0032 a0005c0013t0010g0061	3	108	0.0278	13	c.3-2 others(28): Show c.3-27839_3-27827dupAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69717932	G G	GAAAGAAA others(6): Show GAAAGAAAGAAGAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02055.hp2 HG02129.hp2 others(9): Show HG01884.hp2 HG02055.hp2 HG02129.hp2 HG02257.hp1 HG02258.hp2 HG02630.hp2 HG02970.hp1 HG03130.hp2 HG03195.hp1 HG03225.hp2 HG04184.hp2 NA18966.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0002 a0001c0017 others(2): Show a0001c0001 a0001c0002 a0001c0017 a0002c0015 a0008c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 others(8): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 a0001c0001t0018 a0001c0001t0025 a0001c0001t0030 a0001c0001t0053 a0001c0002t0080 a0001c0017t0052 a0002c0015t0008 a0008c0010t0043	a0001c0001t0002g0027 a0001c0001t0003g0041 a0001c0001t0011g0035 others(9): Show a0001c0001t0002g0027 a0001c0001t0003g0041 a0001c0001t0011g0035 a0001c0001t0011g0042 a0001c0001t0018g0023 a0001c0001t0025g0011 a0001c0001t0030g0077 a0001c0001t0053g0058 a0001c0002t0080g0046 a0001c0017t0052g0017 a0002c0015t0008g0004 a0008c0010t0043g0031	12	108	0.1111	13	c.100 others(32): Show c.100+39464_100+39465insGAAAAAGAAAGAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69751162	A A	AGCAATTA others(6): Show AGCAATTATAATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02630.hp2 HG02258.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0017 a0001c0001 a0001c0017	a0001c0001t0002 a0001c0017t0052 a0001c0001t0002 a0001c0017t0052	a0001c0001t0002g0027 a0001c0017t0052g0017 a0001c0001t0002g0027 a0001c0017t0052g0017	2	108	0.0185	13	c.101 others(30): Show c.101-9020_101-9008dupAATATGCAATTAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781684	A A	AAGAAGAA others(6): Show AAGAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0079 a0001c0002t0079	a0001c0002t0079g0068 a0001c0002t0079g0068	1	108	0.0093	13	c.304 others(32): Show c.304-10358_304-10357insGAAGAAAGAAAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69879212	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02622.hp2 HG02486.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0064 a0001c0004t0049 a0001c0001t0064 a0001c0004t0049	a0001c0001t0064g0026 a0001c0004t0049g0033 a0001c0001t0064g0026 a0001c0004t0049g0033	2	108	0.0185	13	c.647 others(32): Show c.647+40941_647+40953dupAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	7/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	70082781	A A	ATCTTTTT others(6): Show ATCTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01175.hp2 HG01192.hp2 others(7): Show HG00621.hp2 HG01175.hp2 HG01192.hp2 HG01884.hp1 HG02055.hp2 HG02647.hp2 HG02922.hp1 HG03704.hp2 HG04115.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0011 a0001c0001t0023 others(7): Show a0001c0001t0001 a0001c0001t0011 a0001c0001t0023 a0001c0001t0027 a0001c0001t0029 a0001c0001t0044 a0001c0001t0055 a0001c0001t0069 a0001c0001t0077 a0001c0002t0080	a0001c0001t0001g0012 a0001c0001t0011g0035 a0001c0001t0023g0036 others(7): Show a0001c0001t0001g0012 a0001c0001t0011g0035 a0001c0001t0023g0036 a0001c0001t0027g0040 a0001c0001t0029g0019 a0001c0001t0044g0083 a0001c0001t0055g0039 a0001c0001t0069g0067 a0001c0001t0077g0055 a0001c0002t0080g0046	10	108	0.0926	13	c.445 others(32): Show c.4452+6484_4452+6485insCTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8A_chr9_128877133_128923039	128890130	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18990.hp1 NA19004.hp1 NA20805.hp2 NA18990.hp1 NA19004.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0252 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0252	3	344	0.0087	13	c.-9+ others(28): Show c.-9+4009_-9+4010insGTGTGTGTGTGTG	LRRC8A	ENSG00000136802.12	transcript	ENST00000372600.9	protein_coding	2/3			chr9	TogoVar
LRRC8B_chr1_89519829_89602861	89541710	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03471.hp2 HG06807.hp2 HG03041.hp1 HG03471.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0085 a0001c0001t0007g0086 a0001c0001t0007g0087 a0001c0001t0007g0085 a0001c0001t0007g0086 a0001c0001t0007g0087	3	324	0.0093	13	c.-24 others(34): Show c.-241+16715_-241+16727dupAAAAAAAAAAAAA	LRRC8B	ENSG00000197147.15	transcript	ENST00000330947.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8B_chr1_89519829_89602861	89562182	C C	CACACACA others(6): Show CACACACACACACA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0258 a0001c0002t0003g0258	1	324	0.0031	13	c.-24 others(32): Show c.-240-6065_-240-6064insACACACACACACA	LRRC8B	ENSG00000197147.15	transcript	ENST00000330947.7	protein_coding	1/5			chr1	TogoVar
LRRC8D_chr1_89816032_89941611	89860785	A A	AAATATAT others(6): Show AAATATATATATAT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0152 a0001c0001t0001g0152	1	210	0.0048	13	c.-3+ others(30): Show c.-3+17004_-3+17005insATATATATATATA	LRRC8D	ENSG00000171492.14	transcript	ENST00000337338.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	59965882	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0095 a0001c0001t0003g0095	1	322	0.0031	13	c.121 others(30): Show c.1212-681_1212-669dupAAAAAAAAAAAAA	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding	10/32		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRD1_chr7_92139842_92184142	92174510	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0038 a0002c0002t0001g0038	1	360	0.0028	13	c.-75 others(30): Show c.-75+4496_-75+4497insTATATATATATAT	LRRD1	ENSG00000240720.10	transcript	ENST00000458448.6	protein_coding	1/5			chr7	TogoVar
LRRFIP1_chr2_237622587_237786643	237681678	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02258.hp1 NA19043.hp2 HG01978.hp1 HG02258.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0005 a0001c0001t0001 a0001c0002t0005	a0001c0001t0001g0010 a0001c0001t0001g0079 a0001c0002t0005g0032 a0001c0001t0001g0010 a0001c0001t0001g0079 a0001c0002t0005g0032	3	276	0.0109	13	c.97- others(30): Show c.97-26859_97-26847dupTTTTTTTTTTTTT	LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRIQ1_chr12_85031351_85250105	85113907	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0133 a0001c0001t0002g0133	1	228	0.0044	13	c.337 others(32): Show c.3377+7292_3377+7293insGTGTGTGTGTGTG	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	15/26			chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85174701	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02486.hp2 HG02809.hp2 others(1): Show HG02055.hp1 HG02486.hp2 HG02809.hp2 HG03486.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0005 a0001c0013 others(1): Show a0001c0001 a0001c0005 a0001c0013 a0004c0011	a0001c0001t0001 a0001c0005t0001 a0001c0013t0001 others(1): Show a0001c0001t0001 a0001c0005t0001 a0001c0013t0001 a0004c0011t0001	a0001c0001t0001g0114 a0001c0005t0001g0118 a0001c0013t0001g0153 others(1): Show a0001c0001t0001g0114 a0001c0005t0001g0118 a0001c0013t0001g0153 a0004c0011t0001g0107	4	228	0.0175	13	c.482 others(34): Show c.4822+13997_4822+14009dupAAAAAAAAAAAAA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ3_chr1_74021015_74203176	74022362	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0227	1	274	0.0037	13	c.44 others(24): Show c.4450_*4451insTTTTTTTTTTTTT	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding		3652		chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74154240	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0108 a0002c0002t0003g0108	1	274	0.0037	13	c.707 others(30): Show c.707+1480_707+1492dupTTTTTTTTTTTTT	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	4/7			chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74199342	T T	TCACCATC others(6): Show TCACCATCATTATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0091 a0001c0001t0002g0091	1	274	0.0037	13	c.-13 others(24): Show c.-1348_-1347insGATAATGATGGTG	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding		1167		chr1	TogoVar
LRRIQ4_chr3_169807870_169842773	169830377	G G	GAAAAAAA others(6): Show GAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG02015.hp2 HG03041.hp1 others(8): Show HG00323.hp1 HG02015.hp2 HG03041.hp1 NA18942.hp2 NA18963.hp2 NA18990.hp2 NA19004.hp2 NA19007.hp1 NA19067.hp1 NA19079.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0011t0001 a0001c0001t0001 a0001c0011t0001	a0001c0001t0001g0143 a0001c0001t0001g0191 a0001c0001t0001g0208 others(8): Show a0001c0001t0001g0143 a0001c0001t0001g0191 a0001c0001t0001g0208 a0001c0001t0001g0235 a0001c0001t0001g0280 a0001c0001t0001g0284 a0001c0001t0001g0286 a0001c0001t0001g0292 a0001c0001t0001g0306 a0001c0001t0001g0333 a0001c0011t0001g0192	11	386	0.0285	13	c.119 others(28): Show c.1195-95_1195-83dupAAAAAAAAAAAAA	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRIQ4_chr3_169807870_169842773	169831261	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0001 a0001c0009t0001	a0001c0009t0001g0349 a0001c0009t0001g0349	1	386	0.0026	13	c.133 others(30): Show c.1333+649_1333+661dupTTTTTTTTTTTTT	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRK1_chr15_100914357_101083257	101058617	C C	CGGGGGGG others(6): Show CGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0223 a0001c0002t0223	a0001c0002t0223g0085 a0001c0002t0223g0085	1	338	0.0030	13	c.467 others(30): Show c.4679+485_4679+486insGGGGGGGGGGGGG	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	29/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK1_chr15_100914357_101083257	101059610	A A	ATTTTTCA others(6): Show ATTTTTCAGCACAG	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01891.hp1 HG02451.hp2 HG01243.hp2 HG01891.hp1 HG02451.hp2	a0001 a0001	a0001c0017 a0001c0022 a0001c0080 a0001c0017 a0001c0022 a0001c0080	a0001c0017t0165 a0001c0022t0164 a0001c0080t0163 a0001c0017t0165 a0001c0022t0164 a0001c0080t0163	a0001c0017t0165g0005 a0001c0022t0164g0327 a0001c0080t0163g0084 a0001c0017t0165g0005 a0001c0022t0164g0327 a0001c0080t0163g0084	3	338	0.0089	13	c.467 others(32): Show c.4679+1469_4679+1470insTTTTTCAGCACAG	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	29/33			chr15	TogoVar
LRRK2_chr12_40219997_40374285	40352469	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp2 HG01071.hp1 others(29): Show HG00140.hp2 HG00323.hp2 HG01071.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01175.hp2 HG01256.hp2 HG01258.hp2 HG01934.hp1 HG01993.hp1 HG02074.hp2 HG02129.hp1 HG02717.hp2 HG02735.hp1 HG02735.hp2 HG02976.hp1 HG02976.hp2 HG03139.hp2 HG03225.hp1 HG03239.hp2 HG03491.hp1 HG03654.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp2 NA18989.hp2 NA18994.hp2 NA19010.hp2 NA19077.hp1 NA20752.hp1 NA20805.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0005 a0008 a0018 a0020 a0032	a0001c0003 a0001c0020 a0002c0040 others(11): Show a0001c0003 a0001c0020 a0002c0040 a0003c0004 a0003c0011 a0003c0014 a0003c0016 a0003c0017 a0003c0025 a0005c0007 a0008c0058 a0018c0027 a0020c0032 a0032c0048	a0001c0003t0003 a0001c0020t0002 a0002c0040t0001 others(13): Show a0001c0003t0003 a0001c0020t0002 a0002c0040t0001 a0003c0004t0004 a0003c0011t0004 a0003c0014t0001 a0003c0014t0010 a0003c0016t0009 a0003c0017t0001 a0003c0025t0001 a0005c0007t0003 a0005c0007t0017 a0008c0058t0009 a0018c0027t0001 a0020c0032t0001 a0032c0048t0001	a0001c0003t0003g0189 a0001c0020t0002g0158 a0002c0040t0001g0101 others(29): Show a0001c0003t0003g0189 a0001c0020t0002g0158 a0002c0040t0001g0101 a0003c0004t0004g0023 a0003c0004t0004g0281 a0003c0004t0004g0282 a0003c0004t0004g0284 a0003c0004t0004g0286 a0003c0004t0004g0287 a0003c0004t0004g0292 a0003c0004t0004g0295 a0003c0004t0004g0296 a0003c0011t0004g0138 a0003c0011t0004g0206 a0003c0014t0001g0352 a0003c0014t0010g0164 a0003c0014t0010g0173 a0003c0016t0009g0131 a0003c0016t0009g0136 a0003c0017t0001g0102 a0003c0017t0001g0149 a0003c0017t0001g0298 a0003c0025t0001g0141 a0003c0025t0001g0142 a0005c0007t0003g0120 a0005c0007t0017g0076 a0008c0058t0009g0129 a0018c0027t0001g0145 a0018c0027t0001g0153 a0020c0032t0001g0071 a0020c0032t0001g0072 a0032c0048t0001g0299	32	382	0.0838	13	c.657 others(30): Show c.6576+746_6576+747insTTTTTTTTTTTTT	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	44/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATCTAA others(6): Show CAATCTAATATATA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01069.hp1 HG01071.hp2 others(21): Show HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01257.hp1 HG01346.hp2 HG01433.hp2 HG02004.hp2 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02273.hp2 HG02630.hp1 HG02647.hp2 HG03195.hp1 HG03486.hp2 HG03490.hp2 HG04199.hp1 NA18954.hp2 NA18978.hp1 NA18999.hp2 NA19000.hp1 NA19056.hp2 NA19066.hp1 NA19083.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0010 others(3): Show a0001c0001 a0001c0002 a0001c0010 a0001c0013 a0002c0003 a0003c0004	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0010t0002 a0001c0013t0002 a0002c0003t0003 a0003c0004t0002	a0001c0001t0001g0140 a0001c0001t0001g0189 a0001c0001t0001g0190 others(20): Show a0001c0001t0001g0140 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0211 a0001c0001t0001g0220 a0001c0001t0001g0279 a0001c0002t0001g0306 a0001c0002t0002g0001 a0001c0002t0002g0006 a0001c0002t0002g0017 a0001c0002t0002g0061 a0001c0002t0002g0110 a0001c0002t0002g0129 a0001c0002t0002g0135 a0001c0002t0002g0271 a0001c0002t0004g0161 a0001c0002t0004g0287 a0001c0010t0002g0274 a0001c0013t0002g0132 a0002c0003t0003g0031 a0003c0004t0002g0063 a0003c0004t0002g0065	24	328	0.0732	13	c.-22 others(34): Show c.-226-11039_-226-11038insTATATATTAGATT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATCTAT others(6): Show CAATCTATTATATA	intron_variant intron_variant	MODIFIER	HG02155.hp2 NA18995.hp1 HG02155.hp2 NA18995.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0012 a0001c0002t0004g0013 a0001c0002t0004g0012 a0001c0002t0004g0013	2	328	0.0061	13	c.-22 others(34): Show c.-226-11039_-226-11038insTATATAATAGATT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204638402	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	328	0.0031	13	c.-22 others(34): Show c.-226-18197_-226-18185dupAAAAAAAAAAAAA	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204652263	C C	CCCCCGCC others(6): Show CCCCCGCCCCCCCG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02040.hp1 HG02074.hp2 others(25): Show HG00140.hp1 HG02040.hp1 HG02074.hp2 HG02083.hp2 HG02129.hp1 HG02165.hp1 HG02523.hp2 HG02698.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG03834.hp1 NA18612.hp1 NA18939.hp1 NA18939.hp2 NA18946.hp1 NA18952.hp1 NA18957.hp1 NA18971.hp1 NA18983.hp2 NA18986.hp1 NA18987.hp1 NA18990.hp2 NA19004.hp2 NA19005.hp1 NA19074.hp2 NA20300.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0004c0008	a0001c0001t0001 a0001c0002t0002 a0002c0003t0003 others(1): Show a0001c0001t0001 a0001c0002t0002 a0002c0003t0003 a0004c0008t0001	a0001c0001t0001g0011 a0001c0001t0001g0033 a0001c0001t0001g0074 others(25): Show a0001c0001t0001g0011 a0001c0001t0001g0033 a0001c0001t0001g0074 a0001c0001t0001g0117 a0001c0001t0001g0124 a0001c0002t0002g0263 a0002c0003t0003g0045 a0002c0003t0003g0058 a0002c0003t0003g0090 a0002c0003t0003g0113 a0002c0003t0003g0120 a0002c0003t0003g0122 a0002c0003t0003g0148 a0002c0003t0003g0243 a0002c0003t0003g0257 a0002c0003t0003g0266 a0002c0003t0003g0278 a0002c0003t0003g0286 a0002c0003t0003g0293 a0002c0003t0003g0294 a0002c0003t0003g0298 a0002c0003t0003g0304 a0002c0003t0003g0310 a0002c0003t0003g0311 a0002c0003t0003g0312 a0002c0003t0003g0313 a0002c0003t0003g0321 a0004c0008t0001g0288	28	328	0.0854	13	c.-22 others(34): Show c.-226-32046_-226-32045insCGGGGGGGCGGGG	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204652268	C C	CCCCGCCC others(6): Show CCCCGCCCCCCCCG	intron_variant intron_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0142 a0001c0002t0002g0142	1	328	0.0031	13	c.-22 others(34): Show c.-226-32051_-226-32050insCGGGGGGGGCGGG	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204652271	G G	GCCCCCCC others(6): Show GCCCCCCCCGCCCC	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0083 a0001c0001t0001g0083	1	328	0.0031	13	c.-22 others(34): Show c.-226-32054_-226-32053insGGGGCGGGGGGGG	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204671395	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0011 a0001c0012t0011	a0001c0012t0011g0107 a0001c0012t0011g0107	1	328	0.0031	13	c.-22 others(34): Show c.-227+13924_-227+13925insCACACACACACAC	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204671642	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0236 a0001c0002t0002g0236	1	328	0.0031	13	c.-22 others(34): Show c.-227+13665_-227+13677dupTTTTTTTTTTTTT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRTM1_chr2_80296878_80309752	80306400	T T	TTTTCTTT others(6): Show TTTTCTTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03579.hp1 NA18983.hp1 HG03579.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0001 a0001c0001t0004g0006 a0001c0001t0001g0001 a0001c0001t0004g0006	2	418	0.0048	13	c.-23 others(24): Show c.-2309_-2308insGAAAGAAAAGAAA	LRRTM1	ENSG00000162951.11	transcript	ENST00000295057.4	protein_coding		1649		chr2	TogoVar
LRRTM3_chr10_66921036_67106551	66996649	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00639.hp1 HG00741.hp1 others(31): Show HG00438.hp2 HG00639.hp1 HG00741.hp1 HG01074.hp1 HG01168.hp2 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01433.hp2 HG01975.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp2 HG02280.hp2 HG02523.hp2 HG02572.hp2 HG02698.hp1 HG02895.hp2 HG03831.hp2 HG03834.hp1 HG03927.hp2 NA18942.hp2 NA18954.hp1 NA18978.hp1 NA18980.hp1 NA18983.hp1 NA18993.hp2 NA19005.hp2 NA19006.hp2 NA19057.hp2 NA19074.hp1 NA19076.hp1 NA19091.hp1 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0002c0002t0004 a0002c0002t0008	a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0072 others(31): Show a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0072 a0001c0001t0001g0100 a0001c0001t0001g0103 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0121 a0001c0001t0001g0177 a0001c0001t0002g0006 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0038 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0073 a0001c0001t0002g0104 a0001c0001t0002g0118 a0001c0001t0002g0136 a0001c0001t0002g0155 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0165 a0001c0001t0002g0167 a0001c0001t0002g0198 a0001c0001t0002g0207 a0001c0001t0005g0150 a0001c0001t0006g0258 a0002c0002t0004g0089 a0002c0002t0004g0099 a0002c0002t0004g0194 a0002c0002t0008g0071	34	294	0.1157	13	c.153 others(34): Show c.1536+68207_1536+68219dupAAAAAAAAAAAAA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67005682	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00438.hp1 HG00735.hp2 others(20): Show HG00099.hp1 HG00438.hp1 HG00735.hp2 HG00741.hp2 HG01099.hp2 HG01168.hp1 HG01433.hp2 HG02129.hp2 HG03654.hp1 HG03834.hp1 NA18612.hp1 NA18948.hp1 NA18957.hp1 NA18962.hp1 NA18964.hp1 NA18978.hp2 NA18992.hp1 NA19005.hp2 NA19055.hp2 NA19082.hp1 NA19084.hp2 NA20752.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0017	a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0059 others(20): Show a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0059 a0001c0001t0001g0086 a0001c0001t0001g0098 a0001c0001t0001g0103 a0001c0001t0001g0114 a0001c0001t0001g0121 a0001c0001t0001g0151 a0001c0001t0001g0157 a0001c0001t0001g0205 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0230 a0001c0001t0002g0038 a0001c0001t0002g0045 a0001c0001t0002g0063 a0001c0001t0002g0097 a0001c0001t0002g0154 a0001c0001t0003g0255 a0001c0001t0003g0259 a0001c0001t0017g0002	23	294	0.0782	13	c.153 others(34): Show c.1536+77239_1536+77251dupTTTTTTTTTTTTT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76746382	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0103 a0001c0001t0002g0103	1	128	0.0078	13	c.23 others(24): Show c.2312_*2313insTTTTTTTTTTTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding		1302		chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76796797	C C	CAAAGCTG others(6): Show CAAAGCTGGATGGA	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	128	0.0078	13	c.155 others(34): Show c.1552-47882_1552-47881insTCCATCCAGCTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76834046	A A	ATTTATTT others(6): Show ATTTATTTATTTAT	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0094 a0001c0001t0004g0094	1	128	0.0078	13	c.155 others(34): Show c.1552-85131_1552-85130insATAAATAAATAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76913543	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02280.hp1 HG02523.hp1 others(11): Show HG01192.hp1 HG02280.hp1 HG02523.hp1 HG02622.hp2 HG02735.hp1 HG03139.hp2 HG03834.hp2 HG03927.hp2 NA18950.hp2 NA18953.hp2 NA18961.hp2 NA18983.hp1 NA19011.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0023 others(11): Show a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0023 a0001c0001t0001g0046 a0001c0001t0001g0056 a0001c0001t0001g0089 a0001c0001t0002g0021 a0001c0001t0002g0049 a0001c0001t0002g0072 a0001c0001t0002g0080 a0001c0001t0002g0119 a0001c0001t0003g0074 a0001c0001t0004g0094 a0001c0001t0006g0034	14	128	0.1094	13	c.155 others(36): Show c.1552-164640_1552-164628dupAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77018772	T T	TAAGTCCT others(6): Show TAAGTCCTTTGATG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00558.hp2 HG00621.hp1 others(99): Show HG00438.hp2 HG00558.hp2 HG00621.hp1 HG00621.hp2 HG00735.hp1 HG00735.hp2 HG01074.hp2 HG01109.hp1 HG01109.hp2 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02135.hp1 HG02145.hp1 HG02145.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG02965.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03704.hp2 HG03834.hp2 HG03927.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18961.hp1 NA18961.hp2 NA18965.hp1 NA18966.hp2 NA18968.hp1 NA18968.hp2 NA18970.hp2 NA18983.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA20129.hp2 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(99): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0038 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0076 a0001c0001t0001g0085 a0001c0001t0001g0089 a0001c0001t0001g0092 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0024 a0001c0001t0002g0029 a0001c0001t0002g0035 a0001c0001t0002g0040 a0001c0001t0002g0049 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0072 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0103 a0001c0001t0002g0105 a0001c0001t0002g0110 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0002g0121 a0001c0001t0002g0122 a0001c0001t0002g0123 a0001c0001t0002g0127 a0001c0001t0003g0031 a0001c0001t0003g0033 a0001c0001t0003g0042 a0001c0001t0003g0047 a0001c0001t0003g0054 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0066 a0001c0001t0003g0074 a0001c0001t0003g0083 a0001c0001t0003g0088 a0001c0001t0003g0090 a0001c0001t0003g0093 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0112 a0001c0001t0003g0117 a0001c0001t0004g0010 a0001c0001t0004g0013 a0001c0001t0004g0025 a0001c0001t0004g0027 a0001c0001t0004g0037 a0001c0001t0004g0052 a0001c0001t0004g0058 a0001c0001t0004g0073 a0001c0001t0004g0094 a0001c0001t0004g0095 a0001c0001t0005g0026 a0001c0001t0005g0091 a0001c0001t0006g0034 a0001c0001t0006g0082 a0001c0001t0007g0084 a0001c0001t0009g0055 a0001c0001t0010g0067 a0001c0001t0011g0120	102	128	0.7969	13	c.155 others(36): Show c.1552-269857_1552-269856insCATCAAAGGACTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77075914	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	128	0.0078	13	c.155 others(36): Show c.1552-327011_1552-326999dupTTTTTTTTTTTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77083783	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0109 a0001c0001t0003g0109	1	128	0.0078	13	c.155 others(36): Show c.1552-334880_1552-334868dupAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77285340	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA21309.hp1 NA18522.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0038 a0001c0001t0002g0051 a0001c0001t0001g0038 a0001c0001t0002g0051	2	128	0.0156	13	c.155 others(36): Show c.1551+232977_1551+232978insTATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG03225.hp2 HG06807.hp1 HG02109.hp1 HG03225.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0118 a0001c0001t0002g0123 a0001c0001t0003g0117 a0001c0001t0002g0118 a0001c0001t0002g0123 a0001c0001t0003g0117	3	128	0.0234	13	c.155 others(36): Show c.1551+211408_1551+211420dupAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77403885	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA21309.hp1 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0038 a0001c0001t0002g0069 a0001c0001t0001g0038 a0001c0001t0002g0069	2	128	0.0156	13	c.155 others(36): Show c.1551+114432_1551+114433insTATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77480866	A A	AGAGAGAG others(6): Show AGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0117 a0001c0001t0003g0117	1	128	0.0078	13	c.155 others(34): Show c.1551+37451_1551+37452insCTCTCTCTCTCTC	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar

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