Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CCDC177_chr14_69564799_69579871	69577856	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00639.hp2 HG01175.hp1 others(46): Show HG00544.hp2 HG00639.hp2 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01433.hp2 HG02015.hp1 HG02071.hp1 HG02083.hp1 HG02257.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02523.hp2 HG02630.hp2 HG02683.hp2 HG02809.hp2 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG03017.hp1 HG03195.hp1 HG03654.hp2 HG03834.hp2 HG04228.hp2 HG06807.hp1 NA18941.hp1 NA18945.hp1 NA18948.hp2 NA18950.hp2 NA18963.hp2 NA18978.hp1 NA18982.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp2 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19010.hp2 NA19063.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp2 NA20905.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0012	a0001c0001 a0002c0002 a0002c0005 others(2): Show a0001c0001 a0002c0002 a0002c0005 a0004c0004 a0012c0017	a0001c0001t0001 a0002c0002t0002 a0002c0002t0006 others(5): Show a0001c0001t0001 a0002c0002t0002 a0002c0002t0006 a0002c0002t0010 a0002c0005t0002 a0004c0004t0004 a0004c0004t0017 a0012c0017t0006	a0001c0001t0001g0001 a0002c0002t0002g0018 a0002c0002t0006g0007 others(6): Show a0001c0001t0001g0001 a0002c0002t0002g0018 a0002c0002t0006g0007 a0002c0002t0006g0023 a0002c0002t0010g0012 a0002c0005t0002g0003 a0004c0004t0004g0004 a0004c0004t0017g0040 a0012c0017t0006g0035	49	338	0.1450	13	c.-33 others(24): Show c.-3344_-3343insTTTTTTTTTTTTT	CCDC177	ENSG00000267909.3	transcript	ENST00000599174.3	protein_coding		2986		chr14	TogoVar
CCDC178_chr18_32932406_33445721	33147356	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp1 HG02486.hp2 others(3): Show HG02145.hp2 HG02258.hp1 HG02486.hp2 HG03195.hp2 HG03486.hp1 HG03710.hp2	a0002 a0003 a0011 a0002 a0003 a0011	a0002c0002 a0003c0003 a0011c0008 a0002c0002 a0003c0003 a0011c0008	a0002c0002t0002 a0003c0003t0001 a0011c0008t0001 a0002c0002t0002 a0003c0003t0001 a0011c0008t0001	a0002c0002t0002g0009 a0003c0003t0001g0014 a0003c0003t0001g0018 others(3): Show a0002c0002t0002g0009 a0003c0003t0001g0014 a0003c0003t0001g0018 a0003c0003t0001g0028 a0003c0003t0001g0058 a0011c0008t0001g0032	6	58	0.1035	13	c.223 others(34): Show c.2239-54459_2239-54447dupAAAAAAAAAAAAA	CCDC178	ENSG00000166960.17	transcript	ENST00000383096.8	protein_coding	20/22			chr18	TogoVar
CCDC178_chr18_32932406_33445721	33179116	A A	ATATATAT others(6): Show ATATATATATAAAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp1 HG02145.hp2 HG02258.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0002 a0003c0003t0001 a0002c0002t0002 a0003c0003t0001	a0002c0002t0002g0009 a0003c0003t0001g0014 a0002c0002t0002g0009 a0003c0003t0001g0014	2	58	0.0345	13	c.223 others(34): Show c.2238+32779_2238+32780insGTTTATATATATA	CCDC178	ENSG00000166960.17	transcript	ENST00000383096.8	protein_coding	20/22			chr18	TogoVar
CCDC178_chr18_32932406_33445721	33331026	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 NA18946.hp1 NA18960.hp1 others(1): Show HG02486.hp1 NA18946.hp1 NA18960.hp1 NA19030.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0002c0002 a0012c0006 a0001c0001 a0002c0002 a0012c0006	a0001c0001t0001 a0002c0002t0001 a0012c0006t0001 a0001c0001t0001 a0002c0002t0001 a0012c0006t0001	a0001c0001t0001g0056 a0002c0002t0001g0021 a0002c0002t0001g0050 others(1): Show a0001c0001t0001g0056 a0002c0002t0001g0021 a0002c0002t0001g0050 a0012c0006t0001g0001	4	58	0.0690	13	c.879 others(30): Show c.879+2135_879+2147dupAAAAAAAAAAAAA	CCDC178	ENSG00000166960.17	transcript	ENST00000383096.8	protein_coding	10/22			chr18	TogoVar
CCDC178_chr18_32932406_33445721	33388519	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG02145.hp1 HG02257.hp2 others(10): Show HG01433.hp1 HG02145.hp1 HG02257.hp2 HG02897.hp1 HG02897.hp2 HG03540.hp1 HG03710.hp1 HG03710.hp2 NA18960.hp2 NA18988.hp1 NA18988.hp2 NA19240.hp1 NA19240.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0006	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0006c0011	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0003c0003t0001 a0006c0011t0001	a0001c0001t0001g0027 a0001c0001t0001g0034 a0001c0001t0001g0051 others(10): Show a0001c0001t0001g0027 a0001c0001t0001g0034 a0001c0001t0001g0051 a0001c0001t0002g0003 a0001c0001t0002g0006 a0002c0002t0001g0019 a0002c0002t0001g0033 a0002c0002t0002g0010 a0002c0002t0002g0011 a0002c0002t0002g0012 a0003c0003t0001g0018 a0003c0003t0001g0022 a0006c0011t0001g0054	13	58	0.2241	13	c.208 others(30): Show c.208+1008_208+1020dupAAAAAAAAAAAAA	CCDC178	ENSG00000166960.17	transcript	ENST00000383096.8	protein_coding	5/22			chr18	TogoVar
CCDC178_chr18_32932406_33445721	33435680	T T	TAATAATA others(6): Show TAATAATATTATTA	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	58	0.0172	13	c.-23 others(30): Show c.-23+4281_-23+4282insTAATAATATTATT	CCDC178	ENSG00000166960.17	transcript	ENST00000383096.8	protein_coding	2/22			chr18	TogoVar
CCDC179_chr11_22841922_22865474	22850976	A A	ATATTTTT others(6): Show ATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0144 a0001c0001t0001g0144	1	446	0.0022	13	c.196 others(30): Show c.196-3456_196-3455insAAAAAAAAAAATA	CCDC179	ENSG00000255359.3	transcript	ENST00000532798.3	protein_coding	3/3			chr11	TogoVar
CCDC181_chr1_169389870_169432474	169432068	A A	AGACTCAA others(6): Show AGACTCAAATACCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp2 HG02004.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0118 a0003c0004t0001g0118	1	366	0.0027	13	c.-48 others(24): Show c.-4805_-4804insAGGTATTTGAGTC	CCDC181	ENSG00000117477.13	transcript	ENST00000367806.8	protein_coding		4595		chr1	TogoVar
CCDC186_chr10_114115862_114179203	114165849	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01891.hp2 HG02148.hp2 others(7): Show HG01106.hp2 HG01891.hp2 HG02148.hp2 HG02257.hp1 HG02451.hp2 HG02818.hp1 HG03486.hp2 NA18940.hp1 NA19030.hp1 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0004 a0001c0001t0002 a0002c0002t0004	a0001c0001t0002g0197 a0001c0001t0002g0204 a0001c0001t0002g0205 others(7): Show a0001c0001t0002g0197 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0210 a0001c0001t0002g0212 a0001c0001t0002g0215 a0001c0001t0002g0251 a0001c0001t0002g0252 a0001c0001t0002g0260 a0002c0002t0004g0051	10	278	0.0360	13	c.-61 others(30): Show c.-61-2533_-61-2521dupTTTTTTTTTTTTT	CCDC186	ENSG00000165813.20	transcript	ENST00000369287.8	protein_coding	1/15			chr10	TogoVar
CCDC187_chr9_136244973_136309094	136293237	T T	TCACTCAT others(6): Show TCACTCATGCCACA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02976.hp1 HG01074.hp1 HG02976.hp1	a0050 a0050	a0050c0048 a0050c0048	a0050c0048t0007 a0050c0048t0007	a0050c0048t0007g0191 a0050c0048t0007g0192 a0050c0048t0007g0191 a0050c0048t0007g0192	2	400	0.0050	13	c.833 others(28): Show c.833-943_833-942insTGTGGCATGAGTG	CCDC187	ENSG00000260220.7	transcript	ENST00000638797.2	protein_coding	4/25			chr9	TogoVar
CCDC188_chr22_20143416_20156055	20151723	A A	AAACATTC others(6): Show AAACATTCTTTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0031 a0001c0001t0002g0031	1	408	0.0025	13	c.-73 others(22): Show c.-738_-737insAGAAAAGAATGTT	CCDC188	ENSG00000234409.7	transcript	ENST00000439765.4	protein_coding		669		chr22	TogoVar
CCDC18_chr1_93175724_93283730	93227969	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0212 a0003c0003t0002g0212	1	316	0.0032	13	c.229 others(32): Show c.2292+1520_2292+1521insTATATATATATAT	CCDC18	ENSG00000122483.18	transcript	ENST00000690025.1	protein_coding	17/28			chr1	TogoVar
CCDC192_chr5_127698391_127946507	127800376	G G	GAAAAAAA others(6): Show GAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02895.hp2 HG02970.hp2 HG01993.hp2 HG02895.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0144 a0001c0001t0001g0202 a0001c0001t0001g0223 a0001c0001t0001g0144 a0001c0001t0001g0202 a0001c0001t0001g0223	3	234	0.0128	13	c.411 others(30): Show c.411+2227_411+2239dupAAAAAAAAAAAAA	CCDC192	ENSG00000230561.7	transcript	ENST00000514853.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
CCDC192_chr5_127698391_127946507	127884342	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02970.hp2 NA19240.hp2 HG02970.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0202 a0001c0002t0001g0084 a0001c0001t0001g0202 a0001c0002t0001g0084	2	234	0.0086	13	c.535 others(30): Show c.535+8696_535+8708dupAAAAAAAAAAAAA	CCDC192	ENSG00000230561.7	transcript	ENST00000514853.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
CCDC192_chr5_127698391_127946507	127912419	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01256.hp1 HG01884.hp1 others(7): Show HG00639.hp2 HG01256.hp1 HG01884.hp1 HG02258.hp2 HG04204.hp2 NA18966.hp1 NA18988.hp1 NA19000.hp1 NA19002.hp2 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0051 a0001c0001t0001g0088 a0001c0001t0001g0134 others(7): Show a0001c0001t0001g0051 a0001c0001t0001g0088 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0170 a0001c0001t0001g0192 a0001c0001t0001g0222 a0001c0002t0001g0036	10	234	0.0427	13	c.536 others(32): Show c.536-28754_536-28742dupAAAAAAAAAAAAA	CCDC192	ENSG00000230561.7	transcript	ENST00000514853.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr5	TogoVar
CCDC194_chr19_17382196_17399196	17382276	A A	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp1 NA18906.hp2 NA20300.hp2 HG02630.hp1 NA18906.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0019 a0001c0001t0001 a0002c0002t0019	a0001c0001t0001g0001 a0002c0002t0019g0021 a0001c0001t0001g0001 a0002c0002t0019g0021	3	414	0.0073	13	c.82 others(24): Show c.8232_*8233insCTTTCTTTCTTTC	CCDC194	ENSG00000269720.3	transcript	ENST00000636079.2	protein_coding		4919		chr19	TogoVar
CCDC194_chr19_17382196_17399196	17382280	A A	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02293.hp2 HG02895.hp1 others(4): Show HG02280.hp1 HG02293.hp2 HG02895.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0008 a0001c0001t0031 a0002c0002t0002 a0001c0001t0008 a0001c0001t0031 a0002c0002t0002	a0001c0001t0008g0009 a0001c0001t0031g0042 a0002c0002t0002g0003 others(1): Show a0001c0001t0008g0009 a0001c0001t0031g0042 a0002c0002t0002g0003 a0002c0002t0002g0004	7	414	0.0169	13	c.82 others(24): Show c.8228_*8229insCTTTCTTTCTTTC	CCDC194	ENSG00000269720.3	transcript	ENST00000636079.2	protein_coding		4915		chr19	TogoVar
CCDC195_chr2_224698764_224721365	224706189	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0087 a0001c0001t0000g0087	1	412	0.0024	13	c.483 others(30): Show c.483-2315_483-2303dupAAAAAAAAAAAAA	CCDC195	ENSG00000283428.1	transcript	ENST00000638102.1	protein_coding	2/2			chr2	TogoVar
CCDC196_chr14_66481371_66503553	66484176	A A	AAAAAAAT others(6): Show AAAAAAATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	364	0.0028	13	c.-23 others(24): Show c.-2327_-2326insAAAAAATATATAT	CCDC196	ENSG00000196553.15	transcript	ENST00000636229.1	protein_coding		2194		chr14	TogoVar
CCDC196_chr14_66481371_66503553	66484176	A A	ATATATAT others(6): Show ATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	364	0.0028	13	c.-23 others(24): Show c.-2327_-2326insTATATATATATAT	CCDC196	ENSG00000196553.15	transcript	ENST00000636229.1	protein_coding		2194		chr14	TogoVar
CCDC200_chr17_43216420_43233623	43230678	G G	GGAAAAAA others(6): Show GGAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG02886.hp2 HG02723.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0235 a0001c0001t0002g0003 a0001c0001t0002g0235	2	334	0.0060	13	c.-21 others(24): Show c.-2125_-2124insTTTTTTTTTTTTC	CCDC200	ENSG00000236383.9	transcript	ENST00000636331.2	protein_coding		2056		chr17	TogoVar
CCDC22_chrX_49230470_49255520	49235862	C C	CGCACACA others(6): Show CGCACACACACACA	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA18981.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0112 a0001c0002t0001g0112	1	296	0.0034	13	c.50+ others(26): Show c.50+176_50+177insGCACACACACACA	CCDC22	ENSG00000101997.13	transcript	ENST00000376227.4	protein_coding	1/16			chrX	TogoVar
CCDC24_chr1_43986599_44001528	43994442	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	406	0.0025	13	c.497 others(28): Show c.497+481_497+482insCTTTCTTTCTTTT	CCDC24	ENSG00000159214.13	transcript	ENST00000372318.8	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
CCDC25_chr8_27728316_27777640	27759779	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00558.hp1 HG00597.hp1 others(45): Show HG00280.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG01074.hp2 HG01168.hp1 HG01243.hp1 HG01258.hp2 HG01358.hp2 HG01515.hp2 HG01943.hp2 HG01993.hp2 HG02132.hp2 HG02148.hp1 HG02293.hp1 HG02523.hp1 HG03239.hp2 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp1 NA18747.hp1 NA18939.hp1 NA18946.hp2 NA18950.hp1 NA18950.hp2 NA18959.hp2 NA18960.hp1 NA18970.hp1 NA18970.hp2 NA18973.hp1 NA18980.hp2 NA18981.hp2 NA18982.hp1 NA18988.hp2 NA18989.hp1 NA18990.hp2 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp2 NA19064.hp2 NA19066.hp2 NA19067.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0004 a0001c0001t0001g0016 a0001c0001t0001g0038 others(31): Show a0001c0001t0001g0004 a0001c0001t0001g0016 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0170 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0218 a0001c0001t0001g0223 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0004g0049 a0001c0001t0004g0169 a0001c0001t0004g0179 a0001c0001t0004g0222 a0001c0001t0004g0224 a0001c0001t0004g0242	48	368	0.1304	13	c.116 others(30): Show c.116+2627_116+2639dupTTTTTTTTTTTTT	CCDC25	ENSG00000147419.19	transcript	ENST00000356537.9	protein_coding	3/8			chr8	TogoVar
CCDC30_chr1_42458286_42662190	42575649	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03098.hp1 NA18906.hp2 others(1): Show HG02622.hp1 HG03098.hp1 NA18906.hp2 NA21309.hp2	a0001 a0005 a0006 a0001 a0005 a0006	a0001c0005 a0005c0020 a0006c0029 a0001c0005 a0005c0020 a0006c0029	a0001c0005t0005 a0001c0005t0036 a0005c0020t0008 others(1): Show a0001c0005t0005 a0001c0005t0036 a0005c0020t0008 a0006c0029t0039	a0001c0005t0005g0301 a0001c0005t0036g0309 a0005c0020t0008g0002 others(1): Show a0001c0005t0005g0301 a0001c0005t0036g0309 a0005c0020t0008g0002 a0006c0029t0039g0052	4	324	0.0124	13	c.132 others(32): Show c.1321-1362_1321-1361insAAAAAAAAAAAAA	CCDC30	ENSG00000186409.19	transcript	ENST00000657597.2	protein_coding	11/20		INFO_REALIGN_3_PRIME	chr1	TogoVar
CCDC33_chr15_74231326_74341141	74337138	C C	CCCACCCT others(6): Show CCCACCCTTGGACA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0143 a0001c0001t0001g0143	1	288	0.0035	13	c.10 others(24): Show c.1085_*1086insCCACCCTTGGACA	CCDC33	ENSG00000140481.15	transcript	ENST00000398814.8	protein_coding		998		chr15	TogoVar
CCDC38_chr12_95862048_95947614	95908443	A A	AAGAGGGG others(6): Show AAGAGGGGAGAGGG	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02886.hp1 HG02922.hp2 HG01884.hp2 HG02886.hp1 HG02922.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0005 a0002c0003 a0004c0009 a0001c0005 a0002c0003 a0004c0009	a0001c0005t0001 a0002c0003t0001 a0004c0009t0003 a0001c0005t0001 a0002c0003t0001 a0004c0009t0003	a0001c0005t0001g0021 a0002c0003t0001g0140 a0004c0009t0003g0009 a0001c0005t0001g0021 a0002c0003t0001g0140 a0004c0009t0003g0009	3	350	0.0086	13	c.305 others(30): Show c.305-1993_305-1992insCCCTCTCCCCTCT	CCDC38	ENSG00000165972.13	transcript	ENST00000344280.8	protein_coding	4/15			chr12	TogoVar
CCDC3_chr10_12891625_13006713	12904468	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02040.hp1 HG02055.hp1 others(3): Show HG01243.hp1 HG02040.hp1 HG02055.hp1 HG02451.hp1 HG02559.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0009 a0001c0001t0015 others(2): Show a0001c0001t0005 a0001c0001t0009 a0001c0001t0015 a0001c0001t0020 a0001c0001t0023	a0001c0001t0005g0038 a0001c0001t0005g0378 a0001c0001t0009g0289 others(3): Show a0001c0001t0005g0038 a0001c0001t0005g0378 a0001c0001t0009g0289 a0001c0001t0015g0271 a0001c0001t0020g0304 a0001c0001t0023g0251	6	392	0.0153	13	c.550 others(30): Show c.550-5802_550-5790dupTTTTTTTTTTTTT	CCDC3	ENSG00000151468.11	transcript	ENST00000378825.5	protein_coding	2/2			chr10	TogoVar
CCDC40_chr17_80031642_80105613	80044700	A A	AAATATAT others(6): Show AAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02922.hp1 HG03130.hp1 HG02451.hp1 HG02922.hp1 HG03130.hp1	a0001 a0001	a0001c0009 a0001c0050 a0001c0009 a0001c0050	a0001c0009t0004 a0001c0050t0001 a0001c0009t0004 a0001c0050t0001	a0001c0009t0004g0196 a0001c0009t0004g0207 a0001c0050t0001g0193 a0001c0009t0004g0196 a0001c0009t0004g0207 a0001c0050t0001g0193	3	378	0.0079	13	c.553 others(30): Show c.553-2578_553-2577insATATATATATATA	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC40_chr17_80031642_80105613	80056012	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG04184.hp2 HG03831.hp1 HG04184.hp2	a0001 a0029 a0001 a0029	a0001c0004 a0029c0061 a0001c0004 a0029c0061	a0001c0004t0002 a0029c0061t0004 a0001c0004t0002 a0029c0061t0004	a0001c0004t0002g0368 a0029c0061t0004g0118 a0001c0004t0002g0368 a0029c0061t0004g0118	2	378	0.0053	13	c.116 others(32): Show c.1160-2481_1160-2480insTTTTTTTTTTTTT	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	7/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC40_chr17_80031642_80105613	80056014	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0002 a0001c0014t0002	a0001c0014t0002g0361 a0001c0014t0002g0361	1	378	0.0027	13	c.116 others(32): Show c.1160-2479_1160-2478insTTTTTTTTTTTTT	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	7/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC40_chr17_80031642_80105613	80056016	A A	ATATATTT others(6): Show ATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18986.hp2 NA18986.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0341 a0001c0004t0002g0341	1	378	0.0027	13	c.116 others(32): Show c.1160-2477_1160-2476insATATTTTTTTTTT	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	7/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC40_chr17_80031642_80105613	80056016	A A	ATATTTTT others(6): Show ATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02809.hp2 NA18612.hp2 others(2): Show HG00558.hp1 HG02809.hp2 NA18612.hp2 NA18966.hp2 NA19057.hp1	a0001 a0001	a0001c0004 a0001c0038 a0001c0004 a0001c0038	a0001c0004t0002 a0001c0038t0001 a0001c0004t0002 a0001c0038t0001	a0001c0004t0002g0355 a0001c0004t0002g0360 a0001c0004t0002g0362 others(2): Show a0001c0004t0002g0355 a0001c0004t0002g0360 a0001c0004t0002g0362 a0001c0004t0002g0369 a0001c0038t0001g0349	5	378	0.0132	13	c.116 others(32): Show c.1160-2477_1160-2476insATTTTTTTTTTTT	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	7/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC40_chr17_80031642_80105613	80056016	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0375 a0001c0004t0002g0375	1	378	0.0027	13	c.116 others(32): Show c.1160-2475_1160-2463dupTTTTTTTTTTTTT	CCDC40	ENSG00000141519.15	transcript	ENST00000397545.9	protein_coding	7/19		INFO_REALIGN_3_PRIME	chr17	TogoVar
CCDC47_chr17_63740255_63778597	63751365	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0086 a0001c0001t0011g0086	1	352	0.0028	13	c.137 others(30): Show c.1371+562_1371+574dupTTTTTTTTTTTTT	CCDC47	ENSG00000108588.15	transcript	ENST00000225726.10	protein_coding	12/12			chr17	TogoVar
CCDC57_chr17_82096470_82217842	82184016	T T	TGCGCGCG others(6): Show TGCGCGCGCGGCGC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0228 a0002c0002t0001g0228	1	252	0.0040	13	c.105 others(28): Show c.1053-85_1053-84insGCGCCGCGCGCGC	CCDC57	ENSG00000176155.21	transcript	ENST00000694881.1	protein_coding	7/18			chr17	TogoVar
CCDC60_chr12_119329729_119546040	119346832	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0226 a0001c0001t0002g0226	1	256	0.0039	13	c.90+ others(30): Show c.90+11569_90+11570insCTTTCTTTCTTTT	CCDC60	ENSG00000183273.7	transcript	ENST00000327554.3	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC60_chr12_119329729_119546040	119396656	G G	GATCACTT others(6): Show GATCACTTGAGGTC	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0124 a0001c0001t0002g0124	1	256	0.0039	13	c.91- others(30): Show c.91-32025_91-32013dupTCACTTGAGGTCA	CCDC60	ENSG00000183273.7	transcript	ENST00000327554.3	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC60_chr12_119329729_119546040	119397825	G G	GGAGGGAG others(6): Show GGAGGGAGGGGGGA	intron_variant intron_variant	MODIFIER	HG03540.hp1 NA19066.hp1 HG03540.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0178 a0001c0001t0001g0184 a0001c0001t0001g0178 a0001c0001t0001g0184	2	256	0.0078	13	c.91- others(30): Show c.91-30857_91-30856insAGGGAGGGGGGAG	CCDC60	ENSG00000183273.7	transcript	ENST00000327554.3	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC60_chr12_119329729_119546040	119445433	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01361.hp2 HG01943.hp1 others(10): Show HG00639.hp1 HG01361.hp2 HG01943.hp1 HG02055.hp2 HG02486.hp2 HG02602.hp2 HG02622.hp1 NA18522.hp2 NA18906.hp2 NA18977.hp1 NA18984.hp2 NA19007.hp1 NA19009.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(2): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0004	a0001c0001t0001g0199 a0002c0002t0001g0032 a0002c0002t0001g0050 others(10): Show a0001c0001t0001g0199 a0002c0002t0001g0032 a0002c0002t0001g0050 a0002c0002t0001g0052 a0002c0002t0001g0172 a0002c0002t0001g0179 a0002c0002t0001g0204 a0002c0002t0002g0134 a0002c0002t0003g0044 a0002c0002t0003g0078 a0002c0002t0003g0191 a0002c0002t0004g0126 a0002c0002t0004g0142	13	256	0.0508	13	c.170 others(32): Show c.170+16682_170+16694dupAAAAAAAAAAAAA	CCDC60	ENSG00000183273.7	transcript	ENST00000327554.3	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC62_chr12_122769572_122832528	122822060	A A	AAACACAC others(6): Show AAACACACACACAC	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0239 a0001c0001t0002g0239	1	298	0.0034	13	c.200 others(32): Show c.2002-1305_2002-1304insACACACACACACA	CCDC62	ENSG00000130783.14	transcript	ENST00000253079.11	protein_coding	11/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC62_chr12_122769572_122832528	122822060	A A	ACACACAC others(6): Show ACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02647.hp2 NA19009.hp1 HG02257.hp2 HG02647.hp2 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0269 a0001c0001t0001g0277 a0001c0001t0002g0261 a0001c0001t0001g0269 a0001c0001t0001g0277 a0001c0001t0002g0261	3	298	0.0101	13	c.200 others(32): Show c.2002-1306_2002-1305insCACACACACACAC	CCDC62	ENSG00000130783.14	transcript	ENST00000253079.11	protein_coding	11/12			chr12	TogoVar
CCDC65_chr12_48899133_48926576	48912437	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG02602.hp2 HG03540.hp2 HG01070.hp1 HG02602.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0198 a0001c0001t0001g0233 a0001c0001t0001g0154 a0001c0001t0001g0198 a0001c0001t0001g0233	3	376	0.0080	13	c.301 others(30): Show c.301-1956_301-1944dupAAAAAAAAAAAAA	CCDC65	ENSG00000139537.11	transcript	ENST00000320516.5	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC66_chr3_56552175_56626837	56556842	G G	GGGGGTGT others(6): Show GGGGGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	372	0.0027	13	c.-40 others(22): Show c.-401_-400insGGGGTGTGTGTGT	CCDC66	ENSG00000180376.17	transcript	ENST00000394672.8	protein_coding		332		chr3	TogoVar
CCDC66_chr3_56552175_56626837	56556842	G G	GGGTGTGT others(6): Show GGGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0008 a0008	a0008c0012 a0008c0012	a0008c0012t0008 a0008c0012t0008	a0008c0012t0008g0312 a0008c0012t0008g0312	1	372	0.0027	13	c.-40 others(22): Show c.-401_-400insGGTGTGTGTGTGT	CCDC66	ENSG00000180376.17	transcript	ENST00000394672.8	protein_coding		332		chr3	TogoVar
CCDC66_chr3_56552175_56626837	56597777	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03491.hp1 NA18968.hp1 NA19030.hp2 HG03491.hp1 NA18968.hp1 NA19030.hp2	a0002 a0002	a0002c0002 a0002c0017 a0002c0002 a0002c0017	a0002c0002t0001 a0002c0002t0002 a0002c0017t0002 a0002c0002t0001 a0002c0002t0002 a0002c0017t0002	a0002c0002t0001g0278 a0002c0002t0002g0282 a0002c0017t0002g0235 a0002c0002t0001g0278 a0002c0002t0002g0282 a0002c0017t0002g0235	3	372	0.0081	13	c.140 others(32): Show c.1404+3752_1404+3764dupTTTTTTTTTTTTT	CCDC66	ENSG00000180376.17	transcript	ENST00000394672.8	protein_coding	10/17		INFO_REALIGN_3_PRIME	chr3	TogoVar
CCDC69_chr5_151176052_151229092	151227309	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02818.hp1 HG03579.hp2 others(1): Show HG01884.hp1 HG02818.hp1 HG03579.hp2 NA20905.hp2	a0002 a0004 a0002 a0004	a0002c0002 a0004c0005 a0002c0002 a0004c0005	a0002c0002t0001 a0004c0005t0004 a0004c0005t0007 a0002c0002t0001 a0004c0005t0004 a0004c0005t0007	a0002c0002t0001g0221 a0004c0005t0004g0191 a0004c0005t0004g0198 others(1): Show a0002c0002t0001g0221 a0004c0005t0004g0191 a0004c0005t0004g0198 a0004c0005t0007g0197	4	426	0.0094	13	c.-33 others(24): Show c.-3352_-3340dupTTTTTTTTTTTTT	CCDC69	ENSG00000198624.13	transcript	ENST00000355417.7	protein_coding		3218		chr5	TogoVar
CCDC71_chr3_49157535_49171331	49161063	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0002 a0002c0002t0002g0002	1	242	0.0041	13	c.17 others(24): Show c.1741_*1742insAAAAAAAAAAAAA	CCDC71	ENSG00000177352.10	transcript	ENST00000321895.7	protein_coding		1471		chr3	TogoVar
CCDC77_chr12_396644_447642	416416	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0227 a0002c0002t0001g0227	1	432	0.0023	13	c.271 others(30): Show c.271-2078_271-2077insATATATATATATA	CCDC77	ENSG00000120647.10	transcript	ENST00000239830.9	protein_coding	4/12			chr12	TogoVar
CCDC77_chr12_396644_447642	428510	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03453.hp1 NA18906.hp2 HG01891.hp1 HG03453.hp1 NA18906.hp2	a0003 a0006 a0003 a0006	a0003c0003 a0006c0006 a0003c0003 a0006c0006	a0003c0003t0001 a0003c0003t0007 a0006c0006t0011 a0003c0003t0001 a0003c0003t0007 a0006c0006t0011	a0003c0003t0001g0148 a0003c0003t0007g0327 a0006c0006t0011g0106 a0003c0003t0001g0148 a0003c0003t0007g0327 a0006c0006t0011g0106	3	432	0.0069	13	c.414 others(28): Show c.414-245_414-233dupAAAAAAAAAAAAA	CCDC77	ENSG00000120647.10	transcript	ENST00000239830.9	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr12	TogoVar

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