Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
CHL1_chr3_191763_414417	239595	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01516.hp2 HG00558.hp1 HG01516.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0041 a0001c0001t0002 a0002c0002t0041	a0001c0001t0002g0054 a0002c0002t0041g0280 a0001c0001t0002g0054 a0002c0002t0041g0280	2	175	0.0114	13	c.-17 others(32): Show c.-174-5018_-174-5017insTATATATATATAT		CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	1/27						chr3	TogoVar
CHL1_chr3_191763_414417	314368	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0229 a0001c0001t0003g0229	1	284	0.0035	13	c.-94 others(30): Show c.-94-5313_-94-5312insATATATATATAAT		CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27					INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	333124	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01981.hp1 HG02647.hp2 others(2): Show HG01255.hp1 HG01981.hp1 HG02647.hp2 HG02970.hp1 HG03491.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0016 a0003c0003t0004 a0001c0001t0001 a0001c0001t0016 a0003c0003t0004	a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0172 others(2): Show a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0172 a0001c0001t0016g0100 a0003c0003t0004g0009	5	87	0.0575	13	c.385 others(30): Show c.385+4778_385+4779insTTTTTTTTTTTTT		CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	5/27					INFO_REALIGN_3_PRIME	chr3	TogoVar
CHMP4A_chr14_24204615_24218488	24210370	A A	AGAAGGTA others(6): Show AGAAGGTACACTAG	frameshift_variant others(1): Show frameshift_variant stop_gained	HIGH	NA19006.hp1 NA19006.hp1	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0001 a0007c0005t0001	a0007c0005t0001g0045 a0007c0005t0001g0045	1	416	0.0024	13	c.575 others(20): Show c.575_587dupCTAGTGTACCTTC	p.Thr others(5): Show p.Thr197fs	CHMP4A	ENSG00000254505.11	transcript	ENST00000347519.12	protein_coding	5/6	636/980	587/669	196/222			chr14	TogoVar
CHMP4B_chr20_33806348_33859366	33830933	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01243.hp2 HG01361.hp1 others(5): Show HG00323.hp2 HG01243.hp2 HG01361.hp1 HG01884.hp1 HG02895.hp1 HG02976.hp2 HG03579.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0143 a0001c0001t0001g0147 a0001c0001t0001g0150 others(5): Show a0001c0001t0001g0143 a0001c0001t0001g0147 a0001c0001t0001g0150 a0001c0001t0001g0157 a0001c0001t0001g0182 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206	8	120	0.0667	13	c.191 others(32): Show c.191-17530_191-17518dupTTTTTTTTTTTTT		CHMP4B	ENSG00000101421.4	transcript	ENST00000217402.3	protein_coding	1/4					INFO_REALIGN_3_PRIME	chr20	TogoVar
CHMP6_chr17_80986841_81005133	80988926	T T	TGTGTGTG others(6): Show TGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0001 a0001c0001t0004g0001	1	432	0.0023	13	c.-29 others(24): Show c.-2993_-2992insGTGTGTGTGTGTG		CHMP6	ENSG00000176108.9	transcript	ENST00000325167.9	protein_coding					2914		chr17	TogoVar
CHMP7_chr8_23238637_23266999	23241367	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG00544.hp1 HG03831.hp2 others(16): Show HG00408.hp2 HG00544.hp1 HG03831.hp2 NA18940.hp1 NA18943.hp1 NA18960.hp2 NA18961.hp1 NA18968.hp2 NA18983.hp1 NA18987.hp2 NA18993.hp2 NA18999.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA19070.hp2 NA19075.hp1 NA19081.hp1 NA19086.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0006 a0001c0001 a0003c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0016 a0001c0001t0021 a0003c0006t0001	a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0017 others(14): Show a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0087 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0003g0090 a0001c0001t0003g0114 a0001c0001t0016g0034 a0001c0001t0021g0105 a0003c0006t0001g0077	19	76	0.2500	13	c.-29 others(24): Show c.-2918_-2917insTTTTTTTTTTTTT		CHMP7	ENSG00000147457.14	transcript	ENST00000397677.6	protein_coding					2269		chr8	TogoVar
CHMP7_chr8_23238637_23266999	23252195	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG02074.hp1 HG02155.hp2 others(7): Show HG01943.hp2 HG02074.hp1 HG02155.hp2 HG02165.hp1 HG02735.hp2 NA18948.hp2 NA18969.hp2 NA18993.hp1 NA19072.hp2 NA19075.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0007 a0001c0001 a0007c0007	a0001c0001t0002 a0001c0001t0005 a0007c0007t0002 a0001c0001t0002 a0001c0001t0005 a0007c0007t0002	a0001c0001t0002g0058 a0001c0001t0002g0221 a0001c0001t0002g0226 others(6): Show a0001c0001t0002g0058 a0001c0001t0002g0221 a0001c0001t0002g0226 a0001c0001t0002g0228 a0001c0001t0005g0215 a0001c0001t0005g0216 a0001c0001t0005g0217 a0001c0001t0005g0227 a0007c0007t0002g0270	10	88	0.1136	13	c.471 others(30): Show c.471+2816_471+2828dupTTTTTTTTTTTTT		CHMP7	ENSG00000147457.14	transcript	ENST00000397677.6	protein_coding	3/10					INFO_REALIGN_3_PRIME	chr8	TogoVar
CHM_chrX_85856180_86052558	85913332	A A	AAAAAGAA others(6): Show AAAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG02071.hp1 HG02109.hp2 others(4): Show HG01516.hp1 HG02071.hp1 HG02109.hp2 HG04184.hp2 NA18747.hp1 NA18972.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0001t0004 a0001c0007t0001 a0001c0001t0001 a0001c0001t0004 a0001c0007t0001	a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0039 others(4): Show a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0094 a0001c0001t0001g0163 a0001c0001t0004g0224 a0001c0007t0001g0190	7	51	0.1373	13	c.116 others(32): Show c.1167-1995_1167-1994insCTTTCTTTCTTTT		CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14						chrX	TogoVar
CHM_chrX_85856180_86052558	85913332	A A	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03195.hp1 NA18969.hp2 NA19007.hp1 others(1): Show HG03195.hp1 NA18969.hp2 NA19007.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0087 a0001c0001t0001g0130 others(1): Show a0001c0001t0001g0030 a0001c0001t0001g0087 a0001c0001t0001g0130 a0001c0001t0001g0141	4	48	0.0833	13	c.116 others(32): Show c.1167-1995_1167-1994insCTTTCTTTCTTTC		CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14						chrX	TogoVar
CHM_chrX_85856180_86052558	86013734	A A	AAAAAAAA others(6): Show AAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03139.hp1 HG03195.hp1 others(1): Show HG02922.hp2 HG03139.hp1 HG03195.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 others(1): Show a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0107	4	243	0.0165	13	c.116 others(32): Show c.116+13756_116+13757insCTTTTTTTTTTTT		CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14						chrX	TogoVar
CHN1_chr2_174793809_175010381	174847773	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03516.hp2 NA18522.hp2 HG03516.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0027 a0001c0001t0006g0050 a0001c0001t0006g0027 a0001c0001t0006g0050	2	71	0.0282	13	c.550 others(28): Show c.550-829_550-817dupTTTTTTTTTTTTT		CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	6/12						chr2	TogoVar
CHN2_chr7_29189775_29519328	29233825	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00642.hp1 HG01496.hp1 others(8): Show HG00438.hp2 HG00642.hp1 HG01496.hp1 HG01952.hp1 HG02109.hp2 HG03239.hp2 NA18906.hp1 NA19074.hp2 NA19079.hp1 NA19080.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0002c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0004 a0001c0002t0007 a0001c0005t0001 a0002c0003t0004 a0002c0003t0021	a0001c0001t0001g0148 a0001c0001t0003g0115 a0001c0001t0003g0187 others(8): Show a0001c0001t0001g0148 a0001c0001t0003g0115 a0001c0001t0003g0187 a0001c0001t0005g0098 a0001c0001t0005g0107 a0001c0001t0008g0162 a0001c0002t0004g0110 a0001c0002t0007g0149 a0001c0005t0001g0076 a0002c0003t0004g0054 a0002c0003t0021g0116	11	56	0.1964	13	c.49+ others(30): Show c.49+38849_49+38861dupTTTTTTTTTTTTT		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29252578	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG02615.hp2 HG03225.hp1 others(2): Show HG01069.hp1 HG02615.hp2 HG03225.hp1 HG03704.hp2 HG03831.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 a0002c0003t0002	a0001c0001t0001g0011 a0001c0001t0001g0075 a0001c0001t0007g0217 others(2): Show a0001c0001t0001g0011 a0001c0001t0001g0075 a0001c0001t0007g0217 a0001c0001t0012g0104 a0002c0003t0002g0044	5	121	0.0413	13	c.49+ others(30): Show c.49+57604_49+57616dupTTTTTTTTTTTTT		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29280383	C C	CAATAAAT others(6): Show CAATAAATAAATAA	intron_variant intron_variant	MODIFIER	HG04228.hp1 NA18984.hp2 HG04228.hp1 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0002t0002 a0001c0001t0006 a0001c0002t0002	a0001c0001t0006g0071 a0001c0002t0002g0208 a0001c0001t0006g0071 a0001c0002t0002g0208	2	29	0.0690	13	c.50- others(30): Show c.50-74241_50-74240insATAAATAAATAAA		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29396459	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0113 a0001c0001t0003g0113	1	90	0.0111	13	c.177 others(30): Show c.177-1900_177-1888dupAAAAAAAAAAAAA		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	4/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29442934	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02572.hp1 HG02602.hp2 others(4): Show HG02129.hp2 HG02572.hp1 HG02602.hp2 HG02615.hp1 HG02809.hp2 HG03486.hp1 HG03834.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0004	a0001c0001t0006 a0001c0001t0019 a0001c0002t0003 others(4): Show a0001c0001t0006 a0001c0001t0019 a0001c0002t0003 a0001c0005t0001 a0001c0005t0005 a0001c0006t0022 a0002c0004t0005	a0001c0001t0006g0001 a0001c0001t0019g0121 a0001c0002t0003g0060 others(4): Show a0001c0001t0006g0001 a0001c0001t0019g0121 a0001c0002t0003g0060 a0001c0005t0001g0140 a0001c0005t0005g0120 a0001c0006t0022g0093 a0002c0004t0005g0216	7	95	0.0737	13	c.577 others(32): Show c.577-37340_577-37328dupTTTTTTTTTTTTT		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29473482	T T	TTTTTTTT others(6): Show TTTTTTTTTTTGTG	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0006 a0002c0004t0006	a0002c0004t0006g0119 a0002c0004t0006g0119	1	125	0.0080	13	c.577 others(30): Show c.577-6796_577-6795insTTTTTTTTTGTGT		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29473482	T T	TTTTTTTT others(6): Show TTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0012 a0002c0004t0012	a0002c0004t0012g0126 a0002c0004t0012g0126	1	125	0.0080	13	c.577 others(30): Show c.577-6796_577-6795insTTTTTTTTTTTGT		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29494950	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0070 a0001c0001t0008g0070	1	47	0.0213	13	c.655 others(28): Show c.655-983_655-971dupAAAAAAAAAAAAA		CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23759423	T T	TCTTTCTT others(6): Show TCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	295	0.0034	13	c.18 others(24): Show c.1840_*1841insCTTTCTTTCTTTC		CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding					489		chr16	TogoVar
CHPF_chr2_219533954_219548809	219546778	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0003 a0003	a0003c0010 a0003c0010	a0003c0010t0001 a0003c0010t0001	a0003c0010t0001g0018 a0003c0010t0001g0018	1	24	0.0417	13	c.-32 others(24): Show c.-3253_-3241dupAAAAAAAAAAAAA		CHPF	ENSG00000123989.15	transcript	ENST00000243776.11	protein_coding					2970		chr2	TogoVar
CHRM2_chr7_136863652_137025213	136930898	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01175.hp2 HG02145.hp2 others(8): Show HG00735.hp2 HG01175.hp2 HG02145.hp2 HG02559.hp1 HG02818.hp2 HG03834.hp1 HG04115.hp1 NA18973.hp2 NA18995.hp1 NA19043.hp1 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0008 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0008 a0001c0001t0031	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0284 others(8): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0284 a0001c0001t0007g0088 a0001c0001t0007g0287 a0001c0001t0007g0302 a0001c0001t0007g0316 a0001c0001t0008g0086 a0001c0001t0008g0087 a0001c0001t0008g0092 a0001c0001t0031g0096	11	132	0.0833	13	c.-12 others(34): Show c.-124-61272_-124-61260dupAAAAAAAAAAAAA		CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	136949459	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02896.hp1 HG01884.hp2 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0053 a0001c0001t0015 a0001c0001t0053	a0001c0001t0015g0263 a0001c0001t0053g0264 a0001c0001t0015g0263 a0001c0001t0053g0264	2	128	0.0156	13	c.-12 others(34): Show c.-124-42721_-124-42709dupAAAAAAAAAAAAA		CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3					INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	136973198	C C	CAGGTGAC others(6): Show CAGGTGACGATGGT	intron_variant intron_variant	MODIFIER	HG01891.hp1 NA20129.hp2 HG01891.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0033 a0001c0001t0024 a0001c0001t0033	a0001c0001t0024g0068 a0001c0001t0033g0103 a0001c0001t0024g0068 a0001c0001t0033g0103	2	313	0.0064	13	c.-12 others(34): Show c.-124-18989_-124-18988insAGGTGACGATGGT		CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3						chr7	TogoVar
CHRM2_chr7_136863652_137025213	136973198	C C	CAGGTGAT others(6): Show CAGGTGATGATGGT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG03486.hp2 NA18939.hp2 others(1): Show HG01433.hp1 HG03486.hp2 NA18939.hp2 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0034 a0001c0002t0001 others(1): Show a0001c0001t0004 a0001c0001t0034 a0001c0002t0001 a0001c0002t0005	a0001c0001t0004g0257 a0001c0001t0034g0143 a0001c0002t0001g0027 others(1): Show a0001c0001t0004g0257 a0001c0001t0034g0143 a0001c0002t0001g0027 a0001c0002t0005g0030	4	315	0.0127	13	c.-12 others(34): Show c.-124-18989_-124-18988insAGGTGATGATGGT		CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3						chr7	TogoVar
CHRM3_chr1_239381568_239920450	239383054	G G	GTCTCTCT others(6): Show GTCTCTCTCTTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0065 a0001c0001t0006g0065	1	49	0.0204	13	c.-46 others(24): Show c.-4694_-4693insTCTCTCTCTTCTC		CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding					3513		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404719	A A	AATATATA others(6): Show AATATATATAATAT	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	43	0.0233	13	c.-52 others(34): Show c.-521+17501_-521+17502insATATATATATATA		CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239874301	A A	ATCTATAT others(6): Show ATCTATATACACAG	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0032 a0001c0001t0038g0032	1	114	0.0088	13	c.-19 others(32): Show c.-19-33131_-19-33130insCTATATACACAGT		CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6					INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	34053315	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0011 a0002c0010t0011	a0002c0010t0011g0263 a0002c0010t0011g0263	1	317	0.0032	13	c.-76 others(30): Show c.-76+6444_-76+6445insTATATATATATAT		CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2						chr15	TogoVar
CHRNA10_chr11_3660587_3676384	3663073	C C	CTCATCTC others(6): Show CTCATCTCATCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0056 a0001c0011t0001g0056	1	448	0.0022	13	c.30 others(24): Show c.3033_*3034insTGAGATGAGATGA		CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding					2513		chr11	TogoVar
CHRNA10_chr11_3660587_3676384	3663094	C C	CTCATCTC others(6): Show CTCATCTCATCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 HG00741.hp1 HG01106.hp1 others(1): Show HG00735.hp1 HG00741.hp1 HG01106.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0018 a0002c0002t0006g0019 a0002c0002t0006g0018 a0002c0002t0006g0019	4	397	0.0101	13	c.30 others(24): Show c.3000_*3012dupTGAGATGAGATGA		CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding					2492		chr11	TogoVar
CHRNA10_chr11_3660587_3676384	3663129	C C	CTCATCTC others(6): Show CTCATCTCATCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0045 a0006c0007t0001g0045	1	448	0.0022	13	c.29 others(24): Show c.2965_*2977dupTGAGATGAGATGA		CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding					2457		chr11	TogoVar
CHRNA4_chr20_63338223_63366349	63361724	C C	CGCGCAAG others(6): Show CGCGCAAGGAGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19064.hp1 NA19064.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0088 a0001c0002t0004g0088	1	166	0.0060	13	c.-56 others(22): Show c.-560_-559insCCCCTCCTTGCGC		CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding					376		chr20	TogoVar
CHRNA5_chr15_78560520_78600269	78570424	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00735.hp1 HG01361.hp2 others(12): Show HG00558.hp1 HG00735.hp1 HG01361.hp2 HG02083.hp1 HG03471.hp2 NA18949.hp2 NA18957.hp2 NA18965.hp1 NA18971.hp2 NA18977.hp2 NA18986.hp1 NA19004.hp2 NA19012.hp1 NA19066.hp1 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0012 a0001c0001t0001g0039 a0001c0001t0001g0122 others(9): Show a0001c0001t0001g0012 a0001c0001t0001g0039 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0273 a0001c0001t0001g0287 a0001c0001t0006g0121 a0001c0001t0006g0184 a0001c0001t0006g0185	15	103	0.1456	13	c.106 others(30): Show c.106+4612_106+4624dupTTTTTTTTTTTTT		CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32044253	C C	CTCCCTTC others(6): Show CTCCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0205 a0001c0001t0029g0205	1	23	0.0435	13	c.195 others(32): Show c.195+13219_195+13220insCTTCCTTCCTTCC		CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9					INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32070669	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0199 a0001c0001t0013g0199	1	9	0.1111	13	c.196 others(32): Show c.196-30611_196-30599dupTTTTTTTTTTTTT		CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9					INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32137034	A A	AAAAAAAT others(6): Show AAAAAAATAAAAAT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0192 a0001c0001t0015g0192	1	306	0.0033	13	c.351 others(32): Show c.351-16867_351-16866insTAAAAATAAAAAA		CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9					INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32138726	C C	CTGTTGTT others(6): Show CTGTTGTTTTGTTT	intron_variant intron_variant	MODIFIER	NA18992.hp1 NA18992.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0137 a0001c0002t0002g0137	1	305	0.0033	13	c.351 others(32): Show c.351-15177_351-15176insGTTTTGTTTTGTT		CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9					INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNB3_chr8_42692366_42742407	42703435	A A	AAAAAAAA others(6): Show AAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	NA18980.hp1 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0176 a0001c0001t0002g0176	1	167	0.0060	13	c.53- others(28): Show c.53-5281_53-5280insAAAAAAAAATATA		CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42703435	A A	AAAAAAAA others(6): Show AAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0208 a0001c0001t0002g0208	1	167	0.0060	13	c.53- others(28): Show c.53-5281_53-5280insAAAAAAATATATA		CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRND_chr2_232521160_232541664	232531946	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0114 a0001c0002t0002g0114	1	120	0.0083	13	c.104 others(30): Show c.1047+306_1047+318dupAAAAAAAAAAAAA		CHRND	ENSG00000135902.10	transcript	ENST00000258385.8	protein_coding	9/11					INFO_REALIGN_3_PRIME	chr2	TogoVar
CHST11_chr12_104451948_104767014	104453133	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0073 a0001c0001t0052g0073	1	108	0.0093	13	c.-42 others(24): Show c.-4279_-4278insAAAAAAAAAAAAA		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding					3814		chr12	TogoVar
CHST11_chr12_104451948_104767014	104544138	A A	AAAAAGAA others(6): Show AAAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG03471.hp1 HG04204.hp1 HG01192.hp2 HG03471.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0008 a0001c0001t0011 a0001c0001t0006 a0001c0001t0008 a0001c0001t0011	a0001c0001t0006g0089 a0001c0001t0008g0232 a0001c0001t0011g0203 a0001c0001t0006g0089 a0001c0001t0008g0232 a0001c0001t0011g0203	3	171	0.0175	13	c.119 others(32): Show c.119-57765_119-57764insAGAAAGAAAGAAA		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2					INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544138	A A	AGAAAGAA others(6): Show AGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0155 a0001c0001t0007g0155	1	169	0.0059	13	c.119 others(32): Show c.119-57768_119-57767insGAAAGAAAGAAAG		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2						chr12	TogoVar
CHST11_chr12_104451948_104767014	104544769	T T	TCCCCCCC others(6): Show TCCCCCCCCCCCCC	intron_variant intron_variant	MODIFIER	HG02135.hp2 NA18966.hp2 HG02135.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0011 a0001c0001t0004 a0001c0001t0011	a0001c0001t0004g0065 a0001c0001t0011g0099 a0001c0001t0004g0065 a0001c0001t0011g0099	2	84	0.0238	13	c.119 others(32): Show c.119-57131_119-57130insCCCCCCCCCCCCC		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2					INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544769	T T	TCCCCCCC others(6): Show TCCCCCCCCGCCCC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00597.hp2 HG01167.hp2 others(24): Show HG00438.hp1 HG00597.hp2 HG01167.hp2 HG01257.hp2 HG01433.hp1 HG01496.hp1 HG01978.hp1 HG02074.hp1 HG02132.hp2 HG02135.hp1 HG02559.hp2 HG03017.hp1 HG03017.hp2 HG03490.hp1 HG03491.hp2 NA18943.hp1 NA18944.hp2 NA18945.hp2 NA18979.hp2 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18993.hp1 NA19007.hp1 NA19083.hp2 NA19088.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0035 a0001c0001t0056 a0001c0001t0058 a0001c0001t0069 a0001c0001t0071	a0001c0001t0001g0007 a0001c0001t0001g0037 a0001c0001t0001g0039 others(24): Show a0001c0001t0001g0007 a0001c0001t0001g0037 a0001c0001t0001g0039 a0001c0001t0001g0042 a0001c0001t0001g0076 a0001c0001t0001g0126 a0001c0001t0002g0079 a0001c0001t0002g0085 a0001c0001t0003g0040 a0001c0001t0003g0131 a0001c0001t0003g0218 a0001c0001t0004g0011 a0001c0001t0004g0111 a0001c0001t0006g0132 a0001c0001t0006g0140 a0001c0001t0008g0157 a0001c0001t0009g0043 a0001c0001t0010g0012 a0001c0001t0011g0107 a0001c0001t0015g0130 a0001c0001t0016g0086 a0001c0001t0020g0169 a0001c0001t0035g0163 a0001c0001t0056g0202 a0001c0001t0058g0121 a0001c0001t0069g0104 a0001c0001t0071g0174	27	109	0.2477	13	c.119 others(32): Show c.119-57131_119-57130insCCGCCCCCCCCCC		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2					INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104637302	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0194 a0001c0001t0042g0194	1	32	0.0313	13	c.204 others(32): Show c.204+35332_204+35344dupAAAAAAAAAAAAA		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104686232	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00597.hp1 HG02155.hp1 others(11): Show HG00558.hp2 HG00597.hp1 HG02155.hp1 HG02155.hp2 HG02572.hp2 NA18948.hp2 NA18961.hp2 NA18966.hp1 NA18979.hp1 NA18985.hp2 NA18987.hp2 NA19086.hp2 NA19088.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0011 a0001c0001t0030 a0001c0001t0033	a0001c0001t0001g0007 a0001c0001t0001g0031 a0001c0001t0001g0090 others(11): Show a0001c0001t0001g0007 a0001c0001t0001g0031 a0001c0001t0001g0090 a0001c0001t0001g0234 a0001c0001t0002g0066 a0001c0001t0003g0026 a0001c0001t0003g0035 a0001c0001t0003g0075 a0001c0001t0004g0108 a0001c0001t0005g0225 a0001c0001t0006g0051 a0001c0001t0011g0107 a0001c0001t0030g0112 a0001c0001t0033g0057	14	80	0.1750	13	c.205 others(32): Show c.205-70712_205-70700dupAAAAAAAAAAAAA		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104703652	C C	CAGCTCAG others(6): Show CAGCTCAGAGTGAA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02723.hp2 HG02257.hp1 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0042 a0001c0001t0039 a0001c0001t0042	a0001c0001t0039g0094 a0001c0001t0042g0194 a0001c0001t0039g0094 a0001c0001t0042g0194	2	238	0.0084	13	c.205 others(32): Show c.205-53287_205-53275dupTGAAAGCTCAGAG		CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr12	TogoVar

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