Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNPY1_chr7_155496129_155551559	155527054	C C	CTTTCTTT others(6): Show CTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG01516.hp1 NA18986.hp2 NA18994.hp2 others(1): Show HG01516.hp1 NA18986.hp2 NA18994.hp2 NA19075.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0015 a0001c0002t0029 a0001c0003t0006 a0001c0002t0015 a0001c0002t0029 a0001c0003t0006	a0001c0002t0015g0365 a0001c0002t0029g0309 a0001c0003t0006g0047 others(1): Show a0001c0002t0015g0365 a0001c0002t0029g0309 a0001c0003t0006g0047 a0001c0003t0006g0066	4	183	0.0219	13	c.100 others(32): Show c.100-17958_100-17957insAGAAAGAAAGAAA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNPY4_chr7_100114634_100130508	100121117	T T	TATATATA others(6): Show TATATATATATATA	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	363	0.0028	13	c.119 others(30): Show c.119-1142_119-1141insATATATATATATA	CNPY4	ENSG00000166997.8	transcript	ENST00000262932.5	protein_coding	1/5			chr7	TogoVar
CNR1_chr6_88134864_88171347	88164947	T T	TACACAAC others(6): Show TACACAACCCAACA	intron_variant intron_variant	MODIFIER	NA19001.hp1 NA19001.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0238 a0001c0002t0003g0238	1	396	0.0025	13	c.-64 others(28): Show c.-64+855_-64+856insTGTTGGGTTGTGT	CNR1	ENSG00000118432.13	transcript	ENST00000369501.3	protein_coding	1/1			chr6	TogoVar
CNR2_chr1_23865515_23918362	23895996	T T	TTGCTACC others(6): Show TTGCTACCATTAGC	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0041 a0001c0001t0003g0041	1	266	0.0038	13	c.-46 others(32): Show c.-46+17237_-46+17249dupGCTAATGGTAGCA	CNR2	ENSG00000188822.8	transcript	ENST00000374472.5	protein_coding	1/1			chr1	TogoVar
CNRIP1_chr2_68288010_68324949	68306124	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG03017.hp2 HG03453.hp1 others(1): Show HG00738.hp2 HG03017.hp2 HG03453.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0003t0001 a0001c0001t0002 a0001c0003t0001	a0001c0001t0002g0323 a0001c0003t0001g0238 a0001c0003t0001g0239 others(1): Show a0001c0001t0002g0323 a0001c0003t0001g0238 a0001c0003t0001g0239 a0001c0003t0001g0243	4	63	0.0635	13	c.330 others(32): Show c.330+11020_330+11032dupTTTTTTTTTTTTT	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246642132	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02647.hp2 HG02922.hp1 others(3): Show HG00735.hp1 HG02647.hp2 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0001 a0001c0001t0004 a0001c0001t0008	a0001c0001t0001g0175 a0001c0001t0001g0180 a0001c0001t0004g0016 others(3): Show a0001c0001t0001g0175 a0001c0001t0001g0180 a0001c0001t0004g0016 a0001c0001t0004g0020 a0001c0001t0004g0021 a0001c0001t0008g0023	6	254	0.0236	13	c.937 others(26): Show c.937+95_937+96insTTTTTTTTTTTTT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	8/10			chr1	TogoVar
CNST_chr1_246561456_246673595	246646279	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01243.hp2 HG01891.hp2 others(23): Show HG00733.hp1 HG01243.hp2 HG01891.hp2 HG01981.hp1 HG02257.hp2 HG02451.hp1 HG02615.hp2 HG02622.hp2 HG02723.hp1 HG02809.hp1 HG02818.hp1 HG02896.hp1 HG02897.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03486.hp2 HG03516.hp1 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA20129.hp1 NA20300.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0009 a0001c0001t0016 a0001c0001t0017 a0002c0002t0006 a0003c0003t0001 a0003c0003t0004	a0001c0001t0001g0013 a0001c0001t0001g0132 a0001c0001t0001g0165 others(23): Show a0001c0001t0001g0013 a0001c0001t0001g0132 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0180 a0001c0001t0002g0173 a0001c0001t0004g0028 a0001c0001t0004g0100 a0001c0001t0004g0134 a0001c0001t0004g0172 a0001c0001t0009g0012 a0001c0001t0009g0014 a0001c0001t0009g0015 a0001c0001t0016g0133 a0001c0001t0017g0010 a0002c0002t0006g0031 a0002c0002t0006g0032 a0003c0003t0001g0035 a0003c0003t0001g0040 a0003c0003t0001g0041 a0003c0003t0001g0042 a0003c0003t0001g0043 a0003c0003t0001g0046 a0003c0003t0004g0036 a0003c0003t0004g0038	26	168	0.1548	13	c.938 others(28): Show c.938-857_938-845dupAAAAAAAAAAAAA	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTD1_chr17_42793861_42816587	42801510	A A	AAATATAT others(6): Show AAATATATATATAT	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0133 a0001c0005t0001g0133	1	259	0.0039	13	c.170 others(30): Show c.170-2109_170-2108insATATATATATATA	CNTD1	ENSG00000176563.10	transcript	ENST00000588408.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTD1_chr17_42793861_42816587	42801547	A A	ATATATAT others(6): Show ATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	284	0.0035	13	c.170 others(30): Show c.170-2073_170-2072insTATATATATATAT	CNTD1	ENSG00000176563.10	transcript	ENST00000588408.6	protein_coding	1/6			chr17	TogoVar
CNTFR_chr9_34546433_34594724	34548545	G G	GAAGAGAC others(6): Show GAAGAGACACAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19089.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0135 a0001c0001t0002g0135	1	400	0.0025	13	c.35 others(24): Show c.3525_*3526insTCTTGTGTCTCTT	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding		2887		chr9	TogoVar
CNTLN_chr9_17130040_17508923	17179261	A A	AAAAAAAA others(6): Show AAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0030 a0001c0030	a0001c0030t0002 a0001c0030t0002	a0001c0030t0002g0048 a0001c0030t0002g0048	1	135	0.0074	13	c.449 others(32): Show c.449+35887_449+35888insAAAAAAAAAAGAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17202646	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0019 a0019	a0019c0045 a0019c0045	a0019c0045t0002 a0019c0045t0002	a0019c0045t0002g0046 a0019c0045t0002g0046	1	77	0.0130	13	c.450 others(32): Show c.450-23545_450-23533dupTTTTTTTTTTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17359732	A A	AAAAAAAA others(6): Show AAAAAAAAAAAACC	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0126 a0001c0001t0001g0126	1	210	0.0048	13	c.188 others(32): Show c.1887-6874_1887-6873insCCAAAAAAAAAAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40690834	T T	TTTATTTT others(6): Show TTTATTTTATTTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0055 a0001c0001t0007g0055	1	229	0.0044	13	c.-18 others(24): Show c.-1835_-1834insTTATTTTATTTTA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		1604		chr12	TogoVar
CNTN1_chr12_40687439_41077415	40698228	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0059 a0001c0001t0002g0059	1	24	0.0417	13	c.-77 others(30): Show c.-77+5652_-77+5664dupTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40813026	T T	TTTTCTTT others(6): Show TTTTCTTTCCTTTC	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00735.hp1 HG00738.hp2 others(26): Show HG00621.hp1 HG00735.hp1 HG00738.hp2 HG01069.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01256.hp1 HG01258.hp2 HG01496.hp2 HG02015.hp1 HG02148.hp1 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03098.hp1 HG03540.hp1 HG03654.hp2 NA18747.hp2 NA18959.hp2 NA18964.hp1 NA18973.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18983.hp1 NA18984.hp1 NA19011.hp2 NA19083.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0009 a0002c0007 a0004c0010	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0002t0001 a0001c0002t0002 a0001c0003t0020 a0001c0009t0004 a0002c0007t0008 a0004c0010t0002	a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 others(26): Show a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0095 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0208 a0001c0001t0004g0086 a0001c0001t0006g0105 a0001c0002t0001g0014 a0001c0002t0001g0018 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0001g0124 a0001c0002t0001g0155 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0002g0221 a0001c0003t0020g0164 a0001c0009t0004g0046 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0185 a0002c0007t0008g0191 a0004c0010t0002g0026	29	191	0.1518	13	c.-76 others(32): Show c.-76-95330_-76-95329insTTCTTTCCTTTCT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40974436	C C	CATAAAAA others(6): Show CATAAAAATAAAAA	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA18952.hp2 NA19065.hp2 HG02083.hp2 NA18952.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0135 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0006g0135 a0001c0001t0006g0139 a0001c0001t0006g0140	3	230	0.0130	13	c.180 others(32): Show c.1805-6452_1805-6440dupTAAAAAATAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075740	A A	AGGAAGGA others(6): Show AGGAAGGAAGGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0093 a0001c0001t0004g0093	1	212	0.0047	13	c.57 others(24): Show c.5705_*5706insGGAAGGAAGGAAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3326		chr12	TogoVar
CNTN4_chr3_2093866_3062959	2237652	G G	GTATTTTA others(6): Show GTATTTTAAAAATA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02683.hp1 HG02818.hp1 others(3): Show HG01884.hp1 HG02683.hp1 HG02818.hp1 HG02965.hp1 HG03130.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0025 others(2): Show a0001c0001 a0001c0002 a0001c0025 a0002c0016 a0002c0017	a0001c0001t0003 a0001c0002t0002 a0001c0002t0007 others(3): Show a0001c0001t0003 a0001c0002t0002 a0001c0002t0007 a0001c0025t0001 a0002c0016t0003 a0002c0017t0008	a0001c0001t0003g0095 a0001c0002t0002g0063 a0001c0002t0007g0080 others(3): Show a0001c0001t0003g0095 a0001c0002t0002g0063 a0001c0002t0007g0080 a0001c0025t0001g0099 a0002c0016t0003g0079 a0002c0017t0008g0067	6	116	0.0517	13	c.-14 others(36): Show c.-144-101525_-144-101524insATTTTAAAAATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400943	T T	TCTTATAG others(6): Show TCTTATAGGATATA	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0038 a0001c0002t0002g0038	1	116	0.0086	13	c.-89 others(32): Show c.-89+61710_-89+61711insCTTATAGGATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2611297	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02809.hp2 HG02897.hp2 others(1): Show HG02257.hp1 HG02809.hp2 HG02897.hp2 HG03453.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0006 a0001c0022 others(1): Show a0001c0001 a0001c0006 a0001c0022 a0003c0019	a0001c0001t0003 a0001c0006t0002 a0001c0022t0003 others(1): Show a0001c0001t0003 a0001c0006t0002 a0001c0022t0003 a0003c0019t0002	a0001c0001t0003g0006 a0001c0006t0002g0060 a0001c0022t0003g0083 others(1): Show a0001c0001t0003g0006 a0001c0006t0002g0060 a0001c0022t0003g0083 a0003c0019t0002g0034	4	45	0.0889	13	c.55+ others(30): Show c.55+39742_55+39754dupAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2820961	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03139.hp2 HG03209.hp1 others(1): Show HG02257.hp1 HG03139.hp2 HG03209.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0022 a0001c0002 a0001c0006 a0001c0022	a0001c0002t0001 a0001c0002t0003 a0001c0006t0004 others(1): Show a0001c0002t0001 a0001c0002t0003 a0001c0006t0004 a0001c0022t0003	a0001c0002t0001g0088 a0001c0002t0003g0024 a0001c0006t0004g0004 others(1): Show a0001c0002t0001g0088 a0001c0002t0003g0024 a0001c0006t0004g0004 a0001c0022t0003g0083	4	25	0.1600	13	c.454 others(30): Show c.454+1386_454+1398dupTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99121138	T T	TCTTTCTT others(6): Show TCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0003 a0006c0005t0003	a0006c0005t0003g0045 a0006c0005t0003g0045	1	47	0.0213	13	c.-21 others(34): Show c.-210+99868_-210+99869insCTTTCTTTCTTTC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99131115	A A	AGCTGGGC others(6): Show AGCTGGGCCTGTGG	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0009 a0009	a0009c0008 a0009c0008	a0009c0008t0007 a0009c0008t0007	a0009c0008t0007g0038 a0009c0008t0007g0038	1	66	0.0152	13	c.-21 others(36): Show c.-210+109845_-210+109846insGCTGGGCCTGTGG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99342571	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00733.hp1 NA19043.hp1 HG00733.hp1 NA19043.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0011c0009 a0001c0001 a0011c0009	a0001c0001t0009 a0011c0009t0005 a0001c0001t0009 a0011c0009t0005	a0001c0001t0009g0063 a0011c0009t0005g0056 a0001c0001t0009g0063 a0011c0009t0005g0056	2	13	0.1538	13	c.-71 others(32): Show c.-71+17106_-71+17118dupAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99382845	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02132.hp2 HG03041.hp1 HG02004.hp2 HG02132.hp2 HG03041.hp1	a0001 a0005 a0008 a0001 a0005 a0008	a0001c0001 a0005c0004 a0008c0012 a0001c0001 a0005c0004 a0008c0012	a0001c0001t0001 a0005c0004t0002 a0008c0012t0008 a0001c0001t0001 a0005c0004t0002 a0008c0012t0008	a0001c0001t0001g0004 a0005c0004t0002g0051 a0008c0012t0008g0026 a0001c0001t0001g0004 a0005c0004t0002g0051 a0008c0012t0008g0026	3	10	0.3000	13	c.-71 others(32): Show c.-71+57379_-71+57391dupTTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99508686	C C	CTTTCTTT others(6): Show CTTTCTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02976.hp1 HG02723.hp2 HG02976.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0004 a0003c0003t0007 a0001c0001t0004 a0003c0003t0007	a0001c0001t0004g0044 a0003c0003t0007g0034 a0001c0001t0004g0044 a0003c0003t0007g0034	2	60	0.0333	13	c.-70 others(32): Show c.-70-47456_-70-47455insCTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99637010	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG03041.hp2 NA19000.hp2 HG02004.hp1 HG03041.hp2 NA19000.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0004 a0001c0001 a0005c0004	a0001c0001t0001 a0001c0001t0010 a0005c0004t0002 a0001c0001t0001 a0001c0001t0010 a0005c0004t0002	a0001c0001t0001g0054 a0001c0001t0010g0023 a0005c0004t0002g0001 a0001c0001t0001g0054 a0001c0001t0010g0023 a0005c0004t0002g0001	3	4	0.7500	13	c.55+ others(30): Show c.55+80760_55+80772dupAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100072990	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03130.hp1 HG02976.hp2 HG03130.hp1	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0001 a0006c0005t0001	a0006c0005t0001g0017 a0006c0005t0001g0035 a0006c0005t0001g0017 a0006c0005t0001g0035	2	12	0.1667	13	c.143 others(32): Show c.1430-1145_1430-1133dupAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	12/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100161870	C C	CACACACA others(6): Show CACACACACACACA	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0063 a0001c0001t0009g0063	1	66	0.0152	13	c.158 others(34): Show c.1581-29253_1581-29252insCACACACACAACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1233734	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0005 a0005	a0005c0027 a0005c0027	a0005c0027t0001 a0005c0027t0001	a0005c0027t0001g0191 a0005c0027t0001g0191	1	87	0.0115	13	c.358 others(30): Show c.358+5753_358+5765dupAAAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245303	T T	TATATATA others(6): Show TATATATATATAAC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG00735.hp2 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0003 a0001c0004t0001 a0001c0002t0003 a0001c0004t0001	a0001c0002t0003g0109 a0001c0004t0001g0151 a0001c0002t0003g0109 a0001c0004t0001g0151	2	229	0.0087	13	c.358 others(32): Show c.358+17321_358+17322insACATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01070.hp1 HG01071.hp2 others(9): Show HG00735.hp1 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01175.hp1 HG01361.hp1 HG01978.hp2 HG02027.hp1 HG02257.hp1 HG03492.hp2 NA19000.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0008 a0001c0010	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0004t0001 a0001c0006t0001 a0001c0008t0001 a0001c0010t0001	a0001c0001t0001g0045 a0001c0001t0001g0095 a0001c0001t0001g0096 others(9): Show a0001c0001t0001g0045 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0002t0001g0040 a0001c0002t0001g0041 a0001c0002t0001g0047 a0001c0002t0003g0156 a0001c0004t0001g0147 a0001c0006t0001g0185 a0001c0008t0001g0102 a0001c0008t0001g0167 a0001c0010t0001g0140	12	52	0.2308	13	c.454 others(30): Show c.454+1962_454+1974dupTTTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1348157	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0001 a0001c0010t0001	a0001c0010t0001g0207 a0001c0010t0001g0207	1	112	0.0089	13	c.136 others(32): Show c.1365-4160_1365-4148dupAAAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP1_chr17_42677531_42704993	42686469	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0184 a0001c0001t0002g0184	1	181	0.0055	13	c.900 others(28): Show c.900+340_900+352dupTTTTTTTTTTTTT	CNTNAP1	ENSG00000108797.12	transcript	ENST00000264638.9	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTNAP2_chr7_146111801_148425998	146322634	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0003 a0003	a0003c0014 a0003c0014	a0003c0014t0021 a0003c0014t0021	a0003c0014t0021g0022 a0003c0014t0021g0022	1	15	0.0667	13	c.97+ others(32): Show c.97+205667_97+205679dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146352750	G G	GTTTTTTT others(6): Show GTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	10	0.1000	13	c.97+ others(32): Show c.97+235786_97+235798dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146404124	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02897.hp1 NA20129.hp2 HG02897.hp1 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0023 a0001c0002t0001 a0001c0003t0023	a0001c0002t0001g0008 a0001c0003t0023g0030 a0001c0002t0001g0008 a0001c0003t0023g0030	2	14	0.1429	13	c.97+ others(32): Show c.97+287157_97+287169dupAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146451853	T T	TATATATA others(6): Show TATATATATATACG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp1 HG02630.hp1 others(4): Show HG01891.hp1 HG02451.hp1 HG02630.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0004 a0001c0012 others(1): Show a0001c0002 a0001c0004 a0001c0012 a0003c0014	a0001c0002t0001 a0001c0004t0003 a0001c0004t0005 others(2): Show a0001c0002t0001 a0001c0004t0003 a0001c0004t0005 a0001c0012t0004 a0003c0014t0021	a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0004t0003g0035 others(4): Show a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0012t0004g0026 a0003c0014t0021g0022	7	39	0.1795	13	c.98- others(32): Show c.98-322418_98-322417insATATATATATACG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23			chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146486046	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	4	0.2500	13	c.98- others(32): Show c.98-288201_98-288189dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146633832	G G	GAAAAAAA others(6): Show GAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03139.hp2 NA18522.hp1 HG03139.hp2 NA18522.hp1	a0001 a0001	a0001c0011 a0001c0013 a0001c0011 a0001c0013	a0001c0011t0016 a0001c0013t0003 a0001c0011t0016 a0001c0013t0003	a0001c0011t0016g0019 a0001c0013t0003g0039 a0001c0011t0016g0019 a0001c0013t0003g0039	2	6	0.3333	13	c.98- others(32): Show c.98-140427_98-140415dupAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146665783	T T	TAAAAAAA others(6): Show TAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0040 a0001c0002t0002g0040	1	15	0.0667	13	c.98- others(32): Show c.98-108485_98-108473dupAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146708588	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0022 a0001c0005t0022	a0001c0005t0022g0032 a0001c0005t0022g0032	1	3	0.3333	13	c.98- others(30): Show c.98-65669_98-65657dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146760409	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	4	0.2500	13	c.98- others(30): Show c.98-13841_98-13829dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146871537	A A	ATAAATAA others(6): Show ATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	39	0.0256	13	c.402 others(32): Show c.402+31651_402+31663dupTAAATAAATTAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147237049	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0020 a0001c0001t0007g0020	1	3	0.3333	13	c.134 others(34): Show c.1349-63068_1349-63056dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147469506	A A	ATTTTTTT others(6): Show ATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 NA20129.hp1 HG02486.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0007 a0001c0006t0009 a0001c0001t0007 a0001c0006t0009	a0001c0001t0007g0020 a0001c0006t0009g0028 a0001c0001t0007g0020 a0001c0006t0009g0028	2	23	0.0870	13	c.167 others(34): Show c.1671-16415_1671-16403dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147527015	C C	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0013 a0001c0003t0013	a0001c0003t0013g0010 a0001c0003t0013g0010	1	10	0.1000	13	c.177 others(34): Show c.1778-35108_1778-35096dupTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147560168	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0025 a0001c0008t0001g0025	1	8	0.1250	13	c.177 others(32): Show c.1778-1959_1778-1947dupAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147860589	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0005 a0001c0004t0005	a0001c0004t0005g0004 a0001c0004t0005g0004	1	37	0.0270	13	c.209 others(34): Show c.2099-42974_2099-42962dupAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar

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