Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHKA_chr11_68047859_68126388	68060032	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0119 a0001c0001t0004g0119	1	276	0.0036	14	c.131 others(33): Show c.1314+1920_1314+1921insAAAAAAAAAAAAAA	CHKA	ENSG00000110721.12	transcript	ENST00000265689.9	protein_coding	11/11			chr11	TogoVar
CHL1_chr3_191763_414417	252361	G G	GATATATA others(7): Show GATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03209.hp2 HG03688.hp1 others(3): Show HG03017.hp2 HG03209.hp2 HG03688.hp1 HG03704.hp1 HG04115.hp2 HG04228.hp2	a0001 a0004 a0009 others(1): Show a0001 a0004 a0009 a0019	a0001c0001 a0004c0004 a0009c0010 others(1): Show a0001c0001 a0004c0004 a0009c0010 a0019c0017	a0001c0001t0001 a0001c0001t0003 a0004c0004t0006 others(2): Show a0001c0001t0001 a0001c0001t0003 a0004c0004t0006 a0009c0010t0002 a0019c0017t0015	a0001c0001t0001g0233 a0001c0001t0001g0270 a0001c0001t0003g0258 others(3): Show a0001c0001t0001g0233 a0001c0001t0001g0270 a0001c0001t0003g0258 a0004c0004t0006g0088 a0009c0010t0002g0035 a0019c0017t0015g0034	6	290	0.0207	14	c.-95 others(31): Show c.-95+7696_-95+7709dupATATATATATATAT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	255486	T T	TTGTTTGA others(7): Show TTGTTTGACAACGGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00408.hp1 HG00544.hp2 others(79): Show HG00280.hp1 HG00408.hp1 HG00544.hp2 HG00558.hp2 HG00642.hp1 HG00738.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01243.hp1 HG01255.hp2 HG01256.hp2 HG01346.hp2 HG01952.hp2 HG02074.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02135.hp2 HG02145.hp2 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp2 HG02559.hp2 HG02602.hp2 HG02622.hp2 HG02698.hp2 HG02738.hp1 HG02738.hp2 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03490.hp2 HG03704.hp2 HG03834.hp1 HG03927.hp2 HG03942.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18943.hp2 NA18946.hp2 NA18947.hp2 NA18948.hp2 NA18951.hp2 NA18953.hp2 NA18954.hp1 NA18956.hp1 NA18957.hp2 NA18960.hp2 NA18964.hp2 NA18973.hp1 NA18987.hp2 NA18995.hp2 NA19003.hp1 NA19007.hp2 NA19011.hp2 NA19012.hp2 NA19030.hp2 NA19043.hp1 NA19060.hp2 NA19062.hp2 NA19070.hp2 NA19079.hp2 NA19081.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2	a0001 a0002 a0003 others(9): Show a0001 a0002 a0003 a0004 a0005 a0007 a0009 a0010 a0013 a0014 a0018 a0022	a0001c0001 a0002c0002 a0002c0028 others(10): Show a0001c0001 a0002c0002 a0002c0028 a0003c0003 a0004c0004 a0005c0006 a0007c0008 a0009c0010 a0010c0009 a0013c0013 a0014c0018 a0018c0026 a0022c0022	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0015 a0001c0001t0025 a0001c0001t0028 a0001c0001t0057 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0007 a0002c0002t0014 a0002c0002t0026 a0002c0028t0009 a0003c0003t0008 a0004c0004t0003 a0004c0004t0008 a0005c0006t0019 a0007c0008t0024 a0009c0010t0001 a0009c0010t0048 a0010c0009t0047 a0013c0013t0020 a0014c0018t0001 a0018c0026t0002 a0022c0022t0032	a0001c0001t0001g0057 a0001c0001t0001g0144 a0001c0001t0001g0205 others(79): Show a0001c0001t0001g0057 a0001c0001t0001g0144 a0001c0001t0001g0205 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0278 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0039 a0001c0001t0002g0046 a0001c0001t0002g0051 a0001c0001t0002g0061 a0001c0001t0002g0063 a0001c0001t0002g0068 a0001c0001t0002g0077 a0001c0001t0002g0084 a0001c0001t0003g0229 a0001c0001t0003g0254 a0001c0001t0003g0260 a0001c0001t0003g0262 a0001c0001t0003g0263 a0001c0001t0009g0074 a0001c0001t0009g0075 a0001c0001t0010g0066 a0001c0001t0010g0194 a0001c0001t0013g0241 a0001c0001t0015g0120 a0001c0001t0025g0103 a0001c0001t0028g0232 a0001c0001t0057g0251 a0002c0002t0001g0026 a0002c0002t0001g0056 a0002c0002t0001g0072 a0002c0002t0001g0118 a0002c0002t0001g0195 a0002c0002t0001g0196 a0002c0002t0001g0197 a0002c0002t0001g0286 a0002c0002t0002g0013 a0002c0002t0002g0049 a0002c0002t0002g0053 a0002c0002t0002g0055 a0002c0002t0002g0058 a0002c0002t0002g0059 a0002c0002t0002g0060 a0002c0002t0002g0062 a0002c0002t0002g0064 a0002c0002t0002g0065 a0002c0002t0002g0067 a0002c0002t0002g0069 a0002c0002t0002g0070 a0002c0002t0002g0071 a0002c0002t0002g0073 a0002c0002t0002g0078 a0002c0002t0002g0079 a0002c0002t0002g0116 a0002c0002t0002g0117 a0002c0002t0002g0121 a0002c0002t0002g0123 a0002c0002t0003g0048 a0002c0002t0007g0244 a0002c0002t0014g0104 a0002c0002t0014g0105 a0002c0002t0026g0050 a0002c0028t0009g0085 a0003c0003t0008g0076 a0004c0004t0003g0041 a0004c0004t0008g0235 a0004c0004t0008g0236 a0004c0004t0008g0237 a0005c0006t0019g0124 a0007c0008t0024g0252 a0007c0008t0024g0253 a0009c0010t0001g0047 a0009c0010t0048g0211 a0010c0009t0047g0011 a0013c0013t0020g0031 a0014c0018t0001g0193 a0018c0026t0002g0052 a0022c0022t0032g0240	82	290	0.2828	14	c.-95 others(33): Show c.-95+10796_-95+10797insTTTGACAACGGGTG	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	314329	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG03710.hp1 HG03927.hp1 HG04115.hp2 others(2): Show HG03710.hp1 HG03927.hp1 HG04115.hp2 NA19070.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0002c0002t0002	a0001c0001t0001g0134 a0001c0001t0001g0171 a0001c0001t0003g0258 others(2): Show a0001c0001t0001g0134 a0001c0001t0001g0171 a0001c0001t0003g0258 a0001c0001t0010g0066 a0002c0002t0002g0064	5	290	0.0172	14	c.-94 others(31): Show c.-94-5326_-94-5313dupATATATATATATAT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	314329	G G	GTGTATAT others(7): Show GTGTATATATATATA	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0061 a0001c0001t0002g0061	1	290	0.0035	14	c.-94 others(31): Show c.-94-5353_-94-5352insGTATATATATATAT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	314329	G G	GTGTGTAT others(7): Show GTGTGTATATATATA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0107 a0003c0003t0006g0107	1	290	0.0035	14	c.-94 others(31): Show c.-94-5353_-94-5352insGTGTATATATATAT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	333124	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp1 HG00639.hp2 others(37): Show HG00099.hp2 HG00408.hp1 HG00639.hp2 HG00642.hp2 HG01070.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01099.hp2 HG01169.hp2 HG01243.hp2 HG01258.hp2 HG01516.hp2 HG02129.hp2 HG02451.hp1 HG02523.hp2 HG02630.hp2 HG02965.hp1 HG03491.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 NA18941.hp1 NA18944.hp1 NA18952.hp1 NA18953.hp1 NA18954.hp2 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18970.hp2 NA18982.hp2 NA18986.hp1 NA18986.hp2 NA18995.hp1 NA19062.hp1 NA19081.hp1 NA19088.hp1 NA20129.hp1 NA21309.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0006 a0008 a0012 a0026	a0001c0001 a0002c0002 a0003c0003 others(5): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0006c0005 a0008c0007 a0012c0011 a0026c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0031 a0001c0001t0033 a0001c0001t0042 a0001c0001t0052 a0002c0002t0001 a0003c0003t0058 a0004c0004t0016 a0006c0005t0055 a0008c0007t0001 a0012c0011t0002 a0026c0016t0001	a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0017 others(37): Show a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0134 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0148 a0001c0001t0001g0154 a0001c0001t0001g0158 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0176 a0001c0001t0001g0207 a0001c0001t0001g0228 a0001c0001t0001g0277 a0001c0001t0001g0282 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0046 a0001c0001t0002g0054 a0001c0001t0002g0077 a0001c0001t0002g0168 a0001c0001t0002g0192 a0001c0001t0003g0115 a0001c0001t0003g0255 a0001c0001t0005g0139 a0001c0001t0006g0097 a0001c0001t0031g0086 a0001c0001t0033g0113 a0001c0001t0042g0159 a0001c0001t0052g0111 a0002c0002t0001g0164 a0003c0003t0058g0208 a0004c0004t0016g0126 a0006c0005t0055g0259 a0008c0007t0001g0245 a0012c0011t0002g0098 a0026c0016t0001g0027	40	290	0.1379	14	c.385 others(31): Show c.385+4778_385+4779insTTTTTTTTTTTTTT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	5/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHMP1B_chr18_11846413_11859444	11846464	T T	TACACACA others(7): Show TACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0000 a0001c0001t0012g0000	1	438	0.0023	14	c.-50 others(25): Show c.-5048_-5047insACACACACACACAC	CHMP1B	ENSG00000255112.3	transcript	ENST00000526991.3	protein_coding		4948		chr18	TogoVar
CHMP2A_chr19_58546566_58560105	58546998	G G	GTGTAGGC others(7): Show GTGTAGGCAGAATTC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	420	0.0024	14	c.46 others(25): Show c.4637_*4650dupGAATTCTGCCTACA	CHMP2A	ENSG00000130724.10	transcript	ENST00000312547.7	protein_coding		4567		chr19	TogoVar
CHMP2B_chr3_87222309_87260556	87257949	A A	AATAATAA others(7): Show AATAATAATAATAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	414	0.0024	14	c.41 others(25): Show c.4127_*4128insATAATAATAATAAT	CHMP2B	ENSG00000083937.10	transcript	ENST00000263780.9	protein_coding		2394		chr3	TogoVar
CHMP3_chr2_86498430_86568443	86550401	G G	GGGGAGAG others(7): Show GGGGAGAGGGAGAAA	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00323.hp2 others(5): Show HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp2 HG01175.hp1 HG02074.hp2 NA19003.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0022	a0001c0001t0001g0193 a0001c0001t0001g0246 a0001c0001t0002g0026 others(5): Show a0001c0001t0001g0193 a0001c0001t0001g0246 a0001c0001t0002g0026 a0001c0001t0002g0109 a0001c0001t0003g0066 a0001c0001t0003g0277 a0001c0001t0005g0108 a0001c0001t0022g0116	8	336	0.0238	14	c.46- others(29): Show c.46-8103_46-8090dupTTTCTCCCTCTCCC	CHMP3	ENSG00000115561.16	transcript	ENST00000263856.9	protein_coding	1/5			chr2	TogoVar
CHMP4B_chr20_33806348_33859366	33830933	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00544.hp1 HG00558.hp1 others(81): Show HG00408.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp2 HG00642.hp2 HG01069.hp2 HG01070.hp1 HG01074.hp2 HG01099.hp1 HG01168.hp2 HG01257.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp2 HG01496.hp1 HG01516.hp2 HG01891.hp2 HG01952.hp2 HG01978.hp1 HG01981.hp1 HG02040.hp2 HG02080.hp1 HG02129.hp1 HG02135.hp1 HG02155.hp1 HG02257.hp2 HG02280.hp1 HG02300.hp1 HG02451.hp1 HG02559.hp1 HG02622.hp1 HG02622.hp2 HG02698.hp2 HG02723.hp1 HG02886.hp1 HG02897.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03195.hp1 HG03453.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03704.hp1 HG03710.hp2 HG03831.hp2 HG04199.hp2 HG04228.hp2 NA18612.hp2 NA18939.hp1 NA18945.hp2 NA18951.hp2 NA18955.hp1 NA18956.hp2 NA18957.hp1 NA18962.hp1 NA18964.hp2 NA18973.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp2 NA18983.hp1 NA18991.hp2 NA18992.hp2 NA18998.hp1 NA19002.hp1 NA19003.hp1 NA19009.hp2 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19062.hp1 NA19077.hp2 NA19081.hp1 NA19085.hp1 NA19085.hp2 NA19087.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0012 others(46): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0047 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0180 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0196 a0001c0001t0001g0199 a0001c0001t0001g0201	84	332	0.2530	14	c.191 others(33): Show c.191-17531_191-17518dupTTTTTTTTTTTTTT	CHMP4B	ENSG00000101421.4	transcript	ENST00000217402.3	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr20	TogoVar
CHMP4C_chr8_81727448_81764515	81751333	G G	GATTGTTA others(7): Show GATTGTTAAAATTGT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0196 a0001c0001t0001g0196	1	408	0.0025	14	c.191 others(31): Show c.191-1731_191-1730insATTGTTAAAATTGT	CHMP4C	ENSG00000164695.5	transcript	ENST00000297265.5	protein_coding	1/4			chr8	TogoVar
CHMP6_chr17_80986841_81005133	80988884	G G	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG01943.hp2 HG02004.hp1 others(10): Show HG01168.hp2 HG01943.hp2 HG02004.hp1 HG02129.hp1 HG02148.hp1 HG02895.hp2 NA18959.hp2 NA18963.hp1 NA18981.hp1 NA18981.hp2 NA18989.hp2 NA20129.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0010	a0001c0001t0002g0001 a0001c0001t0002g0014 a0001c0001t0002g0022 others(5): Show a0001c0001t0002g0001 a0001c0001t0002g0014 a0001c0001t0002g0022 a0001c0001t0003g0004 a0001c0001t0004g0001 a0001c0001t0004g0008 a0001c0001t0004g0054 a0001c0001t0010g0023	13	438	0.0297	14	c.-30 others(25): Show c.-3035_-3034insGTGTGTGTGTGTGT	CHMP6	ENSG00000176108.9	transcript	ENST00000325167.9	protein_coding		2956		chr17	TogoVar
CHMP6_chr17_80986841_81005133	80995561	A A	ACGCCCAG others(7): Show ACGCCCAGCAGCACC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02895.hp1 HG03098.hp2 others(8): Show HG02055.hp1 HG02895.hp1 HG03098.hp2 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG03516.hp1 HG03540.hp2 NA18522.hp2 NA19030.hp1 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0013 a0001c0002t0005g0041 a0001c0002t0005g0042 others(4): Show a0001c0002t0005g0013 a0001c0002t0005g0041 a0001c0002t0005g0042 a0001c0002t0005g0043 a0001c0002t0005g0044 a0001c0002t0005g0045 a0001c0002t0005g0065	11	438	0.0251	14	c.262 others(28): Show c.262-101_262-88dupGCACCCGCCCAGCA	CHMP6	ENSG00000176108.9	transcript	ENST00000325167.9	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr17	TogoVar
CHMP7_chr8_23238637_23266999	23241367	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0077 a0001c0001t0016g0077	1	438	0.0023	14	c.-29 others(25): Show c.-2918_-2917insTTTTTTTTTTTTTT	CHMP7	ENSG00000147457.14	transcript	ENST00000397677.6	protein_coding		2269		chr8	TogoVar
CHMP7_chr8_23238637_23266999	23252195	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00408.hp1 HG00423.hp1 others(109): Show HG00099.hp1 HG00408.hp1 HG00423.hp1 HG00544.hp2 HG00597.hp1 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp2 HG00733.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01106.hp1 HG01168.hp1 HG01169.hp2 HG01192.hp1 HG01346.hp2 HG01496.hp1 HG01884.hp1 HG01952.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp2 HG02040.hp2 HG02056.hp2 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp2 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp2 HG02630.hp2 HG02698.hp1 HG02698.hp2 HG02738.hp2 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp2 NA18945.hp2 NA18946.hp2 NA18950.hp1 NA18951.hp2 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18962.hp1 NA18962.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18971.hp1 NA18977.hp1 NA18978.hp1 NA18989.hp1 NA18992.hp1 NA18998.hp2 NA19002.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19006.hp1 NA19006.hp2 NA19009.hp2 NA19057.hp2 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19068.hp1 NA19068.hp2 NA19072.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp2 NA19080.hp2 NA19084.hp2 NA19086.hp2 NA19087.hp2 NA19088.hp1 NA20300.hp1 NA20752.hp2 NA20805.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0008	a0001c0001 a0002c0002 a0005c0011 others(1): Show a0001c0001 a0002c0002 a0005c0011 a0008c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0019 a0001c0001t0020 a0001c0001t0024 a0001c0001t0026 a0001c0001t0027 a0001c0001t0037 a0002c0002t0002 a0005c0011t0002 a0008c0007t0002	a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 others(84): Show a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0335 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0015 a0001c0001t0002g0020 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0238 a0001c0001t0002g0242 a0001c0001t0002g0243 a0001c0001t0002g0247 a0001c0001t0002g0248 a0001c0001t0002g0249 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0258 a0001c0001t0002g0263 a0001c0001t0002g0271 a0001c0001t0002g0273 a0001c0001t0002g0276 a0001c0001t0002g0279 a0001c0001t0002g0283 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0292 a0001c0001t0002g0296 a0001c0001t0002g0302 a0001c0001t0002g0303 a0001c0001t0002g0304 a0001c0001t0002g0305 a0001c0001t0002g0306 a0001c0001t0002g0307 a0001c0001t0002g0311 a0001c0001t0002g0334 a0001c0001t0005g0014 a0001c0001t0005g0019 a0001c0001t0005g0021 a0001c0001t0005g0049 a0001c0001t0005g0256 a0001c0001t0005g0257 a0001c0001t0005g0264 a0001c0001t0005g0265 a0001c0001t0005g0268 a0001c0001t0005g0269 a0001c0001t0005g0270 a0001c0001t0005g0280 a0001c0001t0005g0282 a0001c0001t0005g0286 a0001c0001t0005g0291 a0001c0001t0005g0293 a0001c0001t0005g0295 a0001c0001t0005g0310 a0001c0001t0005g0314 a0001c0001t0005g0315 a0001c0001t0005g0324 a0001c0001t0005g0325 a0001c0001t0008g0272 a0001c0001t0008g0278 a0001c0001t0008g0290 a0001c0001t0008g0332 a0001c0001t0008g0333 a0001c0001t0009g0255 a0001c0001t0009g0281 a0001c0001t0012g0014 a0001c0001t0012g0240 a0001c0001t0013g0221 a0001c0001t0015g0149 a0001c0001t0016g0097 a0001c0001t0019g0244 a0001c0001t0019g0245 a0001c0001t0019g0246 a0001c0001t0020g0267 a0001c0001t0020g0275 a0001c0001t0024g0266 a0001c0001t0026g0316 a0001c0001t0027g0277 a0001c0001t0037g0222 a0002c0002t0002g0274 a0002c0002t0002g0298 a0005c0011t0002g0015 a0008c0007t0002g0308	112	438	0.2557	14	c.471 others(31): Show c.471+2815_471+2828dupTTTTTTTTTTTTTT	CHMP7	ENSG00000147457.14	transcript	ENST00000397677.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHM_chrX_85856180_86052558	85856289	T T	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0014 a0002c0004t0014	a0002c0004t0014g0234 a0002c0004t0014g0234	1	245	0.0041	14	c.83 others(25): Show c.8340_*8341insTTTTTTTTTTTTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding		4890		chrX	TogoVar
CHM_chrX_85856180_86052558	85906268	T T	TCTTGTTA others(7): Show TCTTGTTACCTCTGA	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	245	0.0041	14	c.124 others(33): Show c.1244+4979_1244+4992dupTCAGAGGTAACAAG	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	9/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85911129	G G	GTGTATAT others(7): Show GTGTATATATATATA	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0098	1	245	0.0041	14	c.124 others(31): Show c.1244+131_1244+132insTATATATATATACA	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	9/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85911190	T T	TATATATA others(7): Show TATATATATATATGA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02258.hp1 HG02486.hp1 HG02109.hp2 HG02258.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0012 a0001c0001t0021 a0001c0001t0007 a0001c0001t0012 a0001c0001t0021	a0001c0001t0007g0079 a0001c0001t0012g0224 a0001c0001t0021g0244 a0001c0001t0007g0079 a0001c0001t0012g0224 a0001c0001t0021g0244	3	245	0.0122	14	c.124 others(29): Show c.1244+70_1244+71insTCATATATATATAT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	9/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85913328	A A	AAGAAAGA others(7): Show AAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0198 a0001c0001t0008g0198	1	245	0.0041	14	c.116 others(33): Show c.1167-1991_1167-1990insCTTTCTTTCTTTCT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85913332	A A	AAAAAAGA others(7): Show AAAAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02135.hp1 HG02145.hp1 others(3): Show HG01884.hp1 HG02135.hp1 HG02145.hp1 HG02922.hp2 HG03139.hp1 HG04184.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0004c0009 a0001c0001 a0001c0003 a0004c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0018 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0018 a0001c0003t0005 a0004c0009t0012	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0002g0189 others(3): Show a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0002g0189 a0001c0001t0018g0245 a0001c0003t0005g0227 a0004c0009t0012g0225	6	245	0.0245	14	c.116 others(33): Show c.1167-1995_1167-1994insCTTTCTTTCTTTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85913332	A A	AAGAAAGA others(7): Show AAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG02080.hp1 HG03239.hp2 others(2): Show HG01943.hp1 HG02080.hp1 HG03239.hp2 NA19005.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0001g0132 others(2): Show a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0001g0132 a0001c0001t0001g0150 a0001c0001t0001g0178	5	245	0.0204	14	c.116 others(33): Show c.1167-1995_1167-1994insCTTTCTTTCTTTCT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85949978	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01516.hp1 HG01975.hp1 others(11): Show HG00099.hp2 HG01516.hp1 HG01975.hp1 HG01993.hp2 HG02572.hp1 HG02683.hp2 HG02896.hp2 HG02922.hp2 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03516.hp1 HG03704.hp2 HG04204.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0001c0001t0007 a0002c0004t0014 a0001c0001t0001 a0001c0001t0007 a0002c0004t0014	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 others(11): Show a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0108 a0001c0001t0001g0112 a0001c0001t0001g0115 a0001c0001t0001g0147 a0001c0001t0001g0231 a0001c0001t0007g0077 a0002c0004t0014g0235	14	245	0.0571	14	c.116 others(33): Show c.1166+6161_1166+6174dupATATATATATATAT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	86013733	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00639.hp1 others(19): Show HG00099.hp2 HG00140.hp1 HG00639.hp1 HG01106.hp1 HG01168.hp1 HG01169.hp2 HG01192.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01516.hp1 HG01928.hp1 HG01952.hp1 HG01975.hp1 HG01993.hp2 HG02080.hp1 HG03239.hp2 HG03490.hp1 HG03704.hp2 HG04204.hp1 NA20300.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0040 a0001c0001t0001g0090 a0001c0001t0001g0094 others(19): Show a0001c0001t0001g0040 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0208 a0001c0001t0001g0231 a0001c0001t0013g0102	22	245	0.0898	14	c.116 others(33): Show c.116+13757_116+13758insCTTTTTTTTTTTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14			chrX	TogoVar
CHM_chrX_85856180_86052558	86013733	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAGA	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp1 HG00735.hp2 others(27): Show HG00323.hp2 HG00597.hp1 HG00735.hp2 HG01070.hp2 HG01071.hp2 HG01099.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp1 HG01358.hp1 HG01516.hp2 HG01517.hp2 HG02056.hp1 HG02129.hp1 HG04199.hp1 NA18940.hp1 NA18949.hp2 NA18953.hp1 NA18957.hp1 NA18967.hp1 NA18969.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18999.hp2 NA19003.hp2 NA19055.hp1 NA19060.hp1 NA19088.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0001 a0001c0002t0002	a0001c0001t0001g0047 a0001c0002t0001g0058 a0001c0002t0001g0067 others(27): Show a0001c0001t0001g0047 a0001c0002t0001g0058 a0001c0002t0001g0067 a0001c0002t0002g0041 a0001c0002t0002g0042 a0001c0002t0002g0043 a0001c0002t0002g0045 a0001c0002t0002g0046 a0001c0002t0002g0049 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0054 a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0059 a0001c0002t0002g0060 a0001c0002t0002g0061 a0001c0002t0002g0062 a0001c0002t0002g0063 a0001c0002t0002g0064 a0001c0002t0002g0065 a0001c0002t0002g0066 a0001c0002t0002g0068 a0001c0002t0002g0069 a0001c0002t0002g0070 a0001c0002t0002g0071 a0001c0002t0002g0072 a0001c0002t0002g0073	30	245	0.1225	14	c.116 others(33): Show c.116+13744_116+13757dupTCTTTTTTTTTTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14			chrX	TogoVar
CHN1_chr2_174793809_175010381	174807446	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03654.hp1 NA18968.hp1 NA18974.hp1 others(2): Show HG03654.hp1 NA18968.hp1 NA18974.hp1 NA18991.hp1 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0128 a0001c0001t0001g0135 a0001c0001t0001g0164 others(2): Show a0001c0001t0001g0128 a0001c0001t0001g0135 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0005g0144	5	276	0.0181	14	c.110 others(33): Show c.1102+1445_1102+1458dupCACACACACACACA	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	11/12			chr2	TogoVar
CHN1_chr2_174793809_175010381	174858979	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02300.hp2 HG02451.hp2 others(11): Show HG01361.hp2 HG02300.hp2 HG02451.hp2 HG02698.hp1 HG02970.hp1 HG03098.hp1 HG03098.hp2 HG03239.hp1 HG03471.hp2 HG03486.hp1 HG03654.hp2 HG03834.hp2 HG04115.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009	a0001c0001t0001g0036 a0001c0001t0001g0047 a0001c0001t0001g0066 others(11): Show a0001c0001t0001g0036 a0001c0001t0001g0047 a0001c0001t0001g0066 a0001c0001t0001g0172 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0006g0031 a0001c0001t0006g0038 a0001c0001t0006g0039 a0001c0001t0007g0030 a0001c0001t0007g0033 a0001c0001t0008g0029 a0001c0001t0008g0032 a0001c0001t0009g0001	14	276	0.0507	14	c.550 others(33): Show c.550-12036_550-12023dupGTGTGTGTGTGTGT	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	6/12			chr2	TogoVar
CHN2_chr7_29189775_29519328	29195595	C C	CGAGAGAG others(7): Show CGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01934.hp2 HG02055.hp1 others(5): Show HG01167.hp2 HG01934.hp2 HG02055.hp1 HG02451.hp1 HG02735.hp2 HG02886.hp1 HG06807.hp1 NA18982.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0004 others(2): Show a0001c0001 a0001c0002 a0002c0004 a0002c0010 a0003c0007	a0001c0001t0001 a0001c0001t0006 a0001c0002t0025 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0002t0025 a0002c0004t0001 a0002c0010t0002 a0003c0007t0013	a0001c0001t0001g0025 a0001c0001t0001g0034 a0001c0001t0006g0036 others(5): Show a0001c0001t0001g0025 a0001c0001t0001g0034 a0001c0001t0006g0036 a0001c0001t0006g0037 a0001c0002t0025g0024 a0002c0004t0001g0038 a0002c0010t0002g0033 a0003c0007t0013g0035	8	232	0.0345	14	c.49+ others(27): Show c.49+627_49+640dupAGAGAGAGAGAGAG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29195629	A A	AGAGAGAG others(7): Show AGAGAGAGAGTGTGT	intron_variant intron_variant	MODIFIER	HG02602.hp2 NA18971.hp2 HG02602.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0019 a0001c0001t0007 a0001c0001t0019	a0001c0001t0007g0116 a0001c0001t0019g0115 a0001c0001t0007g0116 a0001c0001t0019g0115	2	232	0.0086	14	c.49+ others(27): Show c.49+640_49+641insAGAGAGAGTGTGTG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29195629	A A	AGAGAGAG others(7): Show AGAGAGAGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0132 a0001c0002t0004g0132	1	232	0.0043	14	c.49+ others(27): Show c.49+640_49+641insAGAGAGTGTGTGTG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29220280	A A	AAGAGAGA others(7): Show AAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02897.hp2 HG02486.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0011 a0001c0002t0026 a0001c0001t0011 a0001c0002t0026	a0001c0001t0011g0164 a0001c0002t0026g0209 a0001c0001t0011g0164 a0001c0002t0026g0209	2	232	0.0086	14	c.49+ others(31): Show c.49+25298_49+25311dupGAGAGAGAGAGAGA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29233825	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01192.hp2 HG01934.hp1 others(18): Show HG01109.hp2 HG01192.hp2 HG01934.hp1 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03516.hp2 HG03834.hp1 NA18906.hp2 NA18948.hp2 NA18972.hp1 NA18998.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(8): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0002t0002 a0001c0002t0010 a0001c0002t0014 a0001c0005t0005 a0002c0003t0002 a0002c0004t0005 a0002c0004t0006 a0002c0004t0012	a0001c0001t0001g0103 a0001c0001t0001g0126 a0001c0001t0001g0130 others(18): Show a0001c0001t0001g0103 a0001c0001t0001g0126 a0001c0001t0001g0130 a0001c0001t0003g0138 a0001c0001t0003g0143 a0001c0001t0003g0204 a0001c0001t0006g0153 a0001c0001t0006g0162 a0001c0002t0002g0002 a0001c0002t0002g0078 a0001c0002t0002g0163 a0001c0002t0002g0165 a0001c0002t0002g0219 a0001c0002t0010g0155 a0001c0002t0014g0067 a0001c0005t0005g0114 a0001c0005t0005g0151 a0002c0003t0002g0154 a0002c0004t0005g0175 a0002c0004t0006g0113 a0002c0004t0012g0180	21	232	0.0905	14	c.49+ others(31): Show c.49+38848_49+38861dupTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29252578	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp2 NA19063.hp2 NA19074.hp1 others(1): Show HG00639.hp2 NA19063.hp2 NA19074.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0003 a0001c0002t0002 a0001c0002t0004 others(1): Show a0001c0001t0003 a0001c0002t0002 a0001c0002t0004 a0001c0008t0011	a0001c0001t0003g0107 a0001c0002t0002g0100 a0001c0002t0004g0095 others(1): Show a0001c0001t0003g0107 a0001c0002t0002g0100 a0001c0002t0004g0095 a0001c0008t0011g0230	4	232	0.0172	14	c.49+ others(31): Show c.49+57603_49+57616dupTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29268283	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00639.hp2 HG00642.hp1 others(36): Show HG00280.hp2 HG00639.hp2 HG00642.hp1 HG01081.hp2 HG01167.hp2 HG01169.hp2 HG01517.hp1 HG01943.hp1 HG01978.hp2 HG02071.hp2 HG02074.hp2 HG02080.hp1 HG02257.hp2 HG02293.hp2 HG02486.hp1 HG02602.hp1 HG02809.hp1 HG03225.hp1 HG04184.hp1 HG04228.hp1 HG04228.hp2 NA18942.hp1 NA18948.hp1 NA18957.hp2 NA18970.hp2 NA18972.hp1 NA18982.hp1 NA18982.hp2 NA18984.hp1 NA18998.hp1 NA19000.hp2 NA19005.hp2 NA19012.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp2 NA19080.hp2 NA19082.hp2 NA19084.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0008 others(2): Show a0001c0001 a0001c0002 a0001c0008 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(14): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0023 a0001c0001t0024 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0008t0011 a0002c0003t0002 a0002c0003t0004 a0002c0004t0001 a0002c0004t0006	a0001c0001t0001g0026 a0001c0001t0001g0034 a0001c0001t0001g0076 others(36): Show a0001c0001t0001g0026 a0001c0001t0001g0034 a0001c0001t0001g0076 a0001c0001t0001g0183 a0001c0001t0001g0213 a0001c0001t0003g0032 a0001c0001t0003g0058 a0001c0001t0003g0087 a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0111 a0001c0001t0003g0138 a0001c0001t0003g0161 a0001c0001t0003g0214 a0001c0001t0005g0006 a0001c0001t0005g0193 a0001c0001t0006g0066 a0001c0001t0006g0147 a0001c0001t0007g0003 a0001c0001t0008g0065 a0001c0001t0009g0090 a0001c0001t0023g0206 a0001c0001t0024g0080 a0001c0002t0002g0098 a0001c0002t0002g0105 a0001c0002t0002g0177 a0001c0002t0002g0219 a0001c0002t0004g0042 a0001c0002t0004g0095 a0001c0002t0004g0118 a0001c0002t0004g0207 a0001c0002t0005g0173 a0001c0002t0005g0218 a0001c0008t0011g0230 a0002c0003t0002g0070 a0002c0003t0004g0021 a0002c0003t0004g0071 a0002c0004t0001g0038 a0002c0004t0006g0201	39	232	0.1681	14	c.49+ others(31): Show c.49+73319_49+73332dupCACACACACACACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29295314	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00609.hp2 others(10): Show HG00438.hp1 HG00438.hp2 HG00609.hp2 HG01071.hp2 HG01433.hp1 HG01952.hp2 HG02572.hp1 HG02896.hp2 HG02897.hp1 HG03471.hp2 HG03491.hp1 NA18984.hp1 NA19082.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0002c0003	a0001c0001t0003 a0001c0001t0006 a0001c0001t0007 others(9): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0001t0023 a0001c0001t0024 a0001c0002t0002 a0001c0002t0004 a0001c0002t0010 a0001c0006t0022 a0002c0003t0004	a0001c0001t0003g0079 a0001c0001t0006g0144 a0001c0001t0007g0212 others(10): Show a0001c0001t0003g0079 a0001c0001t0006g0144 a0001c0001t0007g0212 a0001c0001t0008g0010 a0001c0001t0008g0011 a0001c0001t0012g0172 a0001c0001t0023g0206 a0001c0001t0024g0080 a0001c0002t0002g0149 a0001c0002t0004g0199 a0001c0002t0010g0220 a0001c0006t0022g0119 a0002c0003t0004g0110	13	232	0.0560	14	c.50- others(31): Show c.50-59291_50-59278dupCACACACACACACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29352350	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0002 a0002c0010t0002	a0002c0010t0002g0033 a0002c0010t0002g0033	1	232	0.0043	14	c.50- others(29): Show c.50-2270_50-2257dupGTGTGTGTGTGTGT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29405164	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01169.hp1 HG01952.hp1 others(4): Show HG00558.hp1 HG01169.hp1 HG01952.hp1 HG02615.hp1 NA18942.hp1 NA18948.hp1 NA18982.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0002c0004t0005	a0001c0001t0001g0141 a0001c0001t0003g0087 a0001c0001t0003g0096 others(4): Show a0001c0001t0001g0141 a0001c0001t0003g0087 a0001c0001t0003g0096 a0001c0001t0007g0003 a0001c0001t0008g0176 a0001c0001t0009g0090 a0002c0004t0005g0211	7	232	0.0302	14	c.576 others(31): Show c.576+4381_576+4394dupACACACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29442934	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01928.hp2 HG02293.hp2 others(3): Show HG01109.hp1 HG01928.hp2 HG02293.hp2 HG03225.hp1 NA19063.hp2 NA19085.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0002c0004 a0001c0002 a0002c0003 a0002c0004	a0001c0002t0002 a0002c0003t0002 a0002c0003t0004 others(1): Show a0001c0002t0002 a0002c0003t0002 a0002c0003t0004 a0002c0004t0006	a0001c0002t0002g0100 a0001c0002t0002g0215 a0002c0003t0002g0070 others(3): Show a0001c0002t0002g0100 a0001c0002t0002g0215 a0002c0003t0002g0070 a0002c0003t0002g0142 a0002c0003t0004g0101 a0002c0004t0006g0201	6	232	0.0259	14	c.577 others(33): Show c.577-37341_577-37328dupTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29482797	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0178 a0001c0001t0008g0178	1	232	0.0043	14	c.654 others(31): Show c.654+2470_654+2483dupTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHODL_chr21_18239833_18272370	18265310	C C	CACACATA others(7): Show CACACATATATATAT	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0248 a0001c0001t0012g0248	1	402	0.0025	14	c.738 others(29): Show c.738-643_738-642insCACATATATATATA	CHODL	ENSG00000154645.14	transcript	ENST00000299295.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr21	TogoVar
CHRDL1_chrX_110668856_110800817	110674457	C C	CCACACAC others(7): Show CCACACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03453.hp1 NA20129.hp1 HG03453.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0167 a0001c0001t0020g0168 a0001c0001t0020g0167 a0001c0001t0020g0168	2	172	0.0116	14	c.17 others(25): Show c.1760_*1773dupTGTGTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	12/12	1773		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689524	C C	CTATATAT others(7): Show CTATATATCTATATA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02809.hp2 HG03195.hp1 others(4): Show HG02622.hp2 HG02809.hp2 HG03195.hp1 HG03453.hp1 HG03516.hp1 NA20129.hp1 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0019 a0001c0001t0020 others(3): Show a0001c0001t0001 a0001c0001t0019 a0001c0001t0020 a0001c0001t0044 a0002c0003t0041 a0002c0003t0047	a0001c0001t0001g0103 a0001c0001t0019g0005 a0001c0001t0020g0167 others(4): Show a0001c0001t0001g0103 a0001c0001t0019g0005 a0001c0001t0020g0167 a0001c0001t0020g0168 a0001c0001t0044g0166 a0002c0003t0041g0024 a0002c0003t0047g0127	7	172	0.0407	14	c.779 others(29): Show c.779-722_779-721insTATATAGATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689526	A A	ATATATCT others(7): Show ATATATCTCTATATC	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02040.hp1 HG00621.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0025 a0001c0001t0001g0026	2	172	0.0116	14	c.779 others(29): Show c.779-724_779-723insGATATAGAGATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689897	A A	ATATCTAT others(7): Show ATATCTATATATATC	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0099 a0001c0002t0006g0099	1	172	0.0058	14	c.779 others(31): Show c.779-1095_779-1094insGATATATATAGATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110705304	T T	TATATATA others(7): Show TATATATATACACAC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0050 a0004c0005t0050	a0004c0005t0050g0072 a0004c0005t0050g0072	1	172	0.0058	14	c.542 others(31): Show c.542-4584_542-4583insGTGTGTATATATAT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	6/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110747409	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02615.hp2 HG02886.hp1 others(2): Show HG01243.hp1 HG02615.hp2 HG02886.hp1 HG03195.hp1 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0004c0005	a0001c0001t0019 a0001c0002t0008 a0001c0002t0023 others(2): Show a0001c0001t0019 a0001c0002t0008 a0001c0002t0023 a0001c0006t0008 a0004c0005t0050	a0001c0001t0019g0005 a0001c0002t0008g0010 a0001c0002t0023g0013 others(2): Show a0001c0001t0019g0005 a0001c0002t0008g0010 a0001c0002t0023g0013 a0001c0006t0008g0006 a0004c0005t0050g0072	5	172	0.0291	14	c.301 others(33): Show c.301+12238_301+12251dupGTGTGTGTGTGTGT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	4/11			chrX	TogoVar
CHRFAM7A_chr15_30355566_30398540	30393857	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG03490.hp1 HG01261.hp2 HG03490.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0024 a0003c0003t0002 a0003c0003t0024	a0003c0003t0002g0015 a0003c0003t0024g0018 a0003c0003t0002g0015 a0003c0003t0024g0018	2	133	0.0150	14	c.-76 others(23): Show c.-763_-762insCACACACACACACA	CHRFAM7A	ENSG00000166664.15	transcript	ENST00000299847.7	protein_coding		318		chr15	TogoVar
CHRFAM7A_chr15_30355566_30398540	30393872	T T	TGTGTGGT others(7): Show TGTGTGGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0036 a0004c0004t0003g0036	1	133	0.0075	14	c.-77 others(23): Show c.-778_-777insCACACACACCACAC	CHRFAM7A	ENSG00000166664.15	transcript	ENST00000299847.7	protein_coding		333		chr15	TogoVar

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