Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNST_chr1_246561456_246673595	246646279	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01884.hp2 HG02257.hp1 others(10): Show HG01243.hp1 HG01884.hp2 HG02257.hp1 HG02280.hp1 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02886.hp2 HG03098.hp1 HG03486.hp1 HG03540.hp2 HG03579.hp2 NA19240.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0007	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0007c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0002c0002t0015 a0003c0003t0001 a0003c0003t0004 a0007c0011t0015	a0001c0001t0001g0025 a0001c0001t0001g0290 a0001c0001t0002g0172 others(10): Show a0001c0001t0001g0025 a0001c0001t0001g0290 a0001c0001t0002g0172 a0001c0001t0004g0016 a0001c0001t0004g0150 a0001c0001t0004g0154 a0001c0001t0004g0174 a0001c0001t0004g0275 a0002c0002t0015g0168 a0003c0003t0001g0032 a0003c0003t0001g0037 a0003c0003t0004g0035 a0007c0011t0015g0213	13	320	0.0406	14	c.938 others(29): Show c.938-858_938-845dupAAAAAAAAAAAAAA	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTLN_chr9_17130040_17508923	17179261	A A	AAAAAAAA others(7): Show AAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0009 a0009	a0009c0010 a0009c0010	a0009c0010t0002 a0009c0010t0002	a0009c0010t0002g0049 a0009c0010t0002g0049	1	218	0.0046	14	c.449 others(33): Show c.449+35887_449+35888insAAAAAAAAAAAGAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17185771	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00544.hp1 HG01070.hp1 others(18): Show HG00408.hp1 HG00544.hp1 HG01070.hp1 HG01074.hp2 HG01934.hp1 HG01978.hp2 HG02132.hp1 HG02148.hp2 HG02293.hp2 HG02735.hp2 HG03041.hp2 HG03139.hp1 HG03492.hp2 HG03540.hp2 NA18612.hp1 NA18949.hp2 NA18974.hp1 NA19011.hp1 NA19066.hp1 NA19084.hp2 NA20300.hp2	a0001 a0002 a0005 others(4): Show a0001 a0002 a0005 a0007 a0015 a0021 a0028	a0001c0001 a0001c0004 a0002c0006 others(7): Show a0001c0001 a0001c0004 a0002c0006 a0002c0008 a0002c0013 a0005c0005 a0007c0011 a0015c0018 a0021c0054 a0028c0048	a0001c0001t0001 a0001c0004t0001 a0002c0006t0001 others(9): Show a0001c0001t0001 a0001c0004t0001 a0002c0006t0001 a0002c0006t0002 a0002c0006t0003 a0002c0008t0001 a0002c0013t0001 a0005c0005t0001 a0007c0011t0003 a0015c0018t0001 a0021c0054t0002 a0028c0048t0007	a0001c0001t0001g0124 a0001c0004t0001g0009 a0001c0004t0001g0012 others(18): Show a0001c0001t0001g0124 a0001c0004t0001g0009 a0001c0004t0001g0012 a0001c0004t0001g0015 a0002c0006t0001g0029 a0002c0006t0001g0030 a0002c0006t0001g0033 a0002c0006t0001g0041 a0002c0006t0001g0044 a0002c0006t0001g0076 a0002c0006t0002g0032 a0002c0006t0003g0036 a0002c0008t0001g0037 a0002c0008t0001g0040 a0002c0013t0001g0045 a0005c0005t0001g0075 a0007c0011t0003g0114 a0015c0018t0001g0042 a0015c0018t0001g0043 a0021c0054t0002g0016 a0028c0048t0007g0108	21	218	0.0963	14	c.450 others(33): Show c.450-40414_450-40401dupGTGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17202646	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02896.hp2 HG03225.hp2 others(1): Show HG02895.hp1 HG02896.hp2 HG03225.hp2 NA19060.hp2	a0001 a0002 a0011 a0001 a0002 a0011	a0001c0004 a0002c0046 a0011c0015 a0001c0004 a0002c0046 a0011c0015	a0001c0004t0001 a0002c0046t0007 a0011c0015t0002 a0001c0004t0001 a0002c0046t0007 a0011c0015t0002	a0001c0004t0001g0013 a0002c0046t0007g0216 a0011c0015t0002g0213 others(1): Show a0001c0004t0001g0013 a0002c0046t0007g0216 a0011c0015t0002g0213 a0011c0015t0002g0215	4	218	0.0184	14	c.450 others(33): Show c.450-23546_450-23533dupTTTTTTTTTTTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17302089	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0062 a0003c0002t0001g0062	1	218	0.0046	14	c.114 others(33): Show c.1146+3755_1146+3768dupCACACACACACACA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	7/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17440588	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02056.hp1 HG02155.hp1 others(13): Show HG00673.hp2 HG02056.hp1 HG02155.hp1 HG03239.hp2 NA18947.hp1 NA18951.hp1 NA18955.hp2 NA19002.hp2 NA19011.hp2 NA19057.hp2 NA19060.hp1 NA19062.hp2 NA19068.hp2 NA19084.hp1 NA19086.hp1 NA19087.hp1	a0001 a0003 a0014 others(2): Show a0001 a0003 a0014 a0017 a0023	a0001c0001 a0003c0002 a0014c0034 others(2): Show a0001c0001 a0003c0002 a0014c0034 a0017c0044 a0023c0025	a0001c0001t0001 a0003c0002t0001 a0003c0002t0002 others(3): Show a0001c0001t0001 a0003c0002t0001 a0003c0002t0002 a0014c0034t0001 a0017c0044t0001 a0023c0025t0001	a0001c0001t0001g0169 a0003c0002t0001g0052 a0003c0002t0001g0054 others(13): Show a0001c0001t0001g0169 a0003c0002t0001g0052 a0003c0002t0001g0054 a0003c0002t0001g0058 a0003c0002t0001g0059 a0003c0002t0001g0061 a0003c0002t0001g0062 a0003c0002t0001g0063 a0003c0002t0001g0067 a0003c0002t0001g0068 a0003c0002t0001g0071 a0003c0002t0001g0073 a0003c0002t0002g0064 a0014c0034t0001g0088 a0017c0044t0001g0060 a0023c0025t0001g0218	16	218	0.0734	14	c.311 others(35): Show c.3115-16935_3115-16922dupAAAAAAAAAAAAAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	18/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40737357	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18943.hp2 NA18957.hp2 others(3): Show NA18747.hp1 NA18943.hp2 NA18957.hp2 NA18973.hp1 NA18983.hp1 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0027	a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0002g0175 others(3): Show a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0002g0175 a0001c0001t0004g0029 a0001c0002t0001g0014 a0001c0002t0027g0041	6	230	0.0261	14	c.-77 others(33): Show c.-77+44766_-77+44767insATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40747305	A A	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00738.hp2 HG00741.hp1 others(20): Show HG00673.hp2 HG00738.hp2 HG00741.hp1 HG01123.hp1 HG01175.hp2 HG02486.hp2 HG02615.hp1 HG02818.hp1 HG02976.hp1 HG03098.hp2 HG03471.hp2 HG04115.hp2 NA18950.hp2 NA18959.hp2 NA18961.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp2 NA19065.hp1 NA19066.hp2 NA19079.hp2 NA19083.hp1 NA19083.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0002c0007 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0003t0020 a0001c0004t0003 a0001c0005t0002 a0002c0007t0008 a0004c0011t0001	a0001c0001t0001g0206 a0001c0001t0002g0091 a0001c0002t0001g0001 others(20): Show a0001c0001t0001g0206 a0001c0001t0002g0091 a0001c0002t0001g0001 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0102 a0001c0002t0001g0111 a0001c0002t0001g0121 a0001c0002t0001g0149 a0001c0002t0001g0162 a0001c0002t0001g0163 a0001c0002t0001g0164 a0001c0002t0001g0169 a0001c0002t0002g0221 a0001c0002t0003g0075 a0001c0003t0020g0165 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0005t0002g0210 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0192 a0004c0011t0001g0097	23	230	0.1000	14	c.-77 others(33): Show c.-77+54727_-77+54740dupGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40813051	C C	CTTTCTTT others(7): Show CTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	230	0.0044	14	c.-76 others(33): Show c.-76-95296_-76-95295insTCTTTTTCTTTCTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40822148	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0024 a0001c0002t0001g0024	1	230	0.0044	14	c.-76 others(33): Show c.-76-86198_-76-86185dupTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40862208	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02717.hp1 NA21309.hp1 HG02055.hp1 HG02717.hp1 NA21309.hp1	a0001 a0001	a0001c0003 a0001c0006 a0001c0003 a0001c0006	a0001c0003t0003 a0001c0003t0019 a0001c0006t0006 a0001c0003t0003 a0001c0003t0019 a0001c0006t0006	a0001c0003t0003g0061 a0001c0003t0019g0056 a0001c0006t0006g0119 a0001c0003t0003g0061 a0001c0003t0019g0056 a0001c0006t0006g0119	3	230	0.0130	14	c.-76 others(33): Show c.-76-46134_-76-46121dupACACACACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40924881	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00738.hp2 HG01070.hp2 others(8): Show HG00733.hp2 HG00738.hp2 HG01070.hp2 HG01074.hp1 HG01099.hp2 HG01109.hp2 HG02818.hp1 HG02886.hp1 HG03195.hp2 HG04115.hp2 NA19030.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0005 a0002c0007 others(1): Show a0001c0001 a0001c0005 a0002c0007 a0004c0011	a0001c0001t0001 a0001c0001t0005 a0001c0001t0024 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0024 a0001c0005t0007 a0002c0007t0008 a0004c0011t0001	a0001c0001t0001g0177 a0001c0001t0001g0229 a0001c0001t0005g0020 others(8): Show a0001c0001t0001g0177 a0001c0001t0001g0229 a0001c0001t0005g0020 a0001c0001t0005g0135 a0001c0001t0024g0167 a0001c0005t0007g0148 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0186 a0002c0007t0008g0192 a0004c0011t0001g0097	11	230	0.0478	14	c.496 others(29): Show c.496+233_496+246dupTATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00438.hp1 HG01515.hp1 others(22): Show HG00280.hp1 HG00438.hp1 HG01515.hp1 HG01981.hp2 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02895.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG03704.hp1 HG04115.hp1 NA18747.hp1 NA18950.hp1 NA18964.hp2 NA18970.hp2 NA18984.hp2 NA19007.hp2 NA19030.hp2 NA19066.hp1 NA19079.hp1 NA19091.hp1 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0003c0008	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(9): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0015 a0001c0002t0023 a0001c0003t0005 a0001c0004t0007 a0001c0005t0002 a0003c0008t0002	a0001c0001t0002g0016 a0001c0001t0002g0067 a0001c0001t0002g0069 others(22): Show a0001c0001t0002g0016 a0001c0001t0002g0067 a0001c0001t0002g0069 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0131 a0001c0001t0002g0175 a0001c0001t0002g0209 a0001c0001t0003g0154 a0001c0001t0003g0200 a0001c0001t0004g0054 a0001c0001t0004g0134 a0001c0001t0004g0225 a0001c0001t0007g0006 a0001c0001t0007g0055 a0001c0001t0009g0181 a0001c0001t0009g0183 a0001c0001t0013g0211 a0001c0001t0015g0219 a0001c0002t0023g0144 a0001c0003t0005g0178 a0001c0003t0005g0193 a0001c0004t0007g0213 a0001c0005t0002g0173 a0003c0008t0002g0143	25	230	0.1087	14	c.298 others(35): Show c.2981-16504_2981-16491dupATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41057019	T T	TATTATAA others(7): Show TATTATAAATATTTA	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00673.hp1 HG00735.hp1 others(25): Show HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp2 HG01109.hp1 HG01109.hp2 HG01884.hp1 HG02004.hp1 HG02148.hp1 HG02257.hp1 HG02273.hp2 HG02615.hp2 HG02818.hp1 HG02886.hp1 HG03098.hp1 HG03654.hp1 HG03927.hp2 NA18747.hp2 NA18952.hp1 NA18961.hp2 NA18964.hp1 NA18972.hp1 NA18973.hp1 NA18977.hp1 NA18980.hp1 NA18989.hp2 NA19011.hp2 NA19066.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0002c0007 a0001c0001 a0001c0009 a0002c0007	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0009t0004 a0002c0007t0008	a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 others(25): Show a0001c0001t0001g0037 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0107 a0001c0001t0001g0160 a0001c0001t0001g0201 a0001c0001t0001g0218 a0001c0001t0001g0228 a0001c0001t0004g0029 a0001c0001t0004g0073 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0216 a0001c0001t0004g0225 a0001c0001t0006g0106 a0001c0009t0004g0046 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0186 a0002c0007t0008g0192	28	230	0.1217	14	c.298 others(35): Show c.2981-12940_2981-12939insATTATAAATATTTA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23			chr12	TogoVar
CNTN2_chr1_205038212_205083289	205080525	T T	TACACACA others(7): Show TACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp2 HG03453.hp2 HG03139.hp2 HG03453.hp2	a0005 a0012 a0005 a0012	a0005c0007 a0012c0020 a0005c0007 a0012c0020	a0005c0007t0009 a0012c0020t0014 a0005c0007t0009 a0012c0020t0014	a0005c0007t0009g0267 a0012c0020t0014g0109 a0005c0007t0009g0267 a0012c0020t0014g0109	2	380	0.0053	14	c.67 others(25): Show c.6760_*6761insACACACACACACAC	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding		2237		chr1	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG02129.hp1 HG02258.hp1 others(2): Show HG00323.hp1 HG02129.hp1 HG02258.hp1 HG02735.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0009 a0001c0001 a0001c0006 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0006t0001 a0001c0009t0002	a0001c0001t0001g0106 a0001c0001t0002g0038 a0001c0001t0005g0154 others(2): Show a0001c0001t0001g0106 a0001c0001t0002g0038 a0001c0001t0005g0154 a0001c0006t0001g0142 a0001c0009t0002g0031	5	174	0.0287	14	c.947 others(31): Show c.947-1092_947-1079dupTATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTATAT others(7): Show GTGTATATATATATA	intron_variant intron_variant	MODIFIER	NA18961.hp2 NA18961.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0114 a0001c0002t0001g0114	1	174	0.0058	14	c.947 others(31): Show c.947-1079_947-1078insTATATATATATACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTGTAT others(7): Show GTGTGTATATATATA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG06807.hp2 HG03041.hp1 HG06807.hp2	a0003 a0007 a0003 a0007	a0003c0003 a0007c0025 a0003c0003 a0007c0025	a0003c0003t0002 a0007c0025t0029 a0003c0003t0002 a0007c0025t0029	a0003c0003t0002g0052 a0007c0025t0029g0125 a0003c0003t0002g0052 a0007c0025t0029g0125	2	174	0.0115	14	c.947 others(31): Show c.947-1079_947-1078insTATATATATACACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74424474	C C	CAGAGAGA others(7): Show CAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02896.hp1 HG03098.hp2 others(1): Show HG02895.hp2 HG02896.hp1 HG03098.hp2 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0008 a0002c0005 a0003c0003 a0001c0008 a0002c0005 a0003c0003	a0001c0008t0002 a0002c0005t0002 a0002c0005t0023 others(1): Show a0001c0008t0002 a0002c0005t0002 a0002c0005t0023 a0003c0003t0007	a0001c0008t0002g0068 a0002c0005t0002g0037 a0002c0005t0023g0032 others(1): Show a0001c0008t0002g0068 a0002c0005t0002g0037 a0002c0005t0023g0032 a0003c0003t0007g0034	4	174	0.0230	14	c.454 others(29): Show c.454+357_454+370dupCTCTCTCTCTCTCT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	5/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74575606	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01943.hp2 HG01978.hp1 others(16): Show HG01934.hp2 HG01943.hp2 HG01978.hp1 HG02015.hp1 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02280.hp1 HG02293.hp2 HG02647.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG03540.hp1 HG03710.hp2 NA18956.hp1 NA18977.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0006 others(5): Show a0001c0001 a0001c0002 a0001c0006 a0001c0019 a0002c0004 a0002c0005 a0003c0003 a0003c0007	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 others(10): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0017 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0006t0006 a0001c0019t0016 a0002c0004t0006 a0002c0005t0002 a0003c0003t0002 a0003c0007t0002	a0001c0001t0002g0038 a0001c0001t0004g0098 a0001c0001t0004g0102 others(16): Show a0001c0001t0002g0038 a0001c0001t0004g0098 a0001c0001t0004g0102 a0001c0001t0004g0136 a0001c0001t0005g0169 a0001c0001t0017g0171 a0001c0002t0001g0097 a0001c0002t0001g0107 a0001c0002t0002g0044 a0001c0002t0004g0100 a0001c0002t0004g0123 a0001c0006t0006g0168 a0001c0019t0016g0135 a0002c0004t0006g0143 a0002c0005t0002g0037 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0007t0002g0041	19	174	0.1092	14	c.-81 others(33): Show c.-81+38771_-81+38784dupGTGTGTGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74582783	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02622.hp2 HG02451.hp2 HG02622.hp2	a0003 a0012 a0003 a0012	a0003c0003 a0012c0012 a0003c0003 a0012c0012	a0003c0003t0007 a0012c0012t0003 a0003c0003t0007 a0012c0012t0003	a0003c0003t0007g0074 a0012c0012t0003g0050 a0003c0003t0007g0074 a0012c0012t0003g0050	2	174	0.0115	14	c.-81 others(33): Show c.-81+31594_-81+31607dupCACACACACACACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2120384	T T	TATATATA others(7): Show TATATATATATATAA	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0070 a0001c0003t0003g0070	1	116	0.0086	14	c.-14 others(35): Show c.-145+19758_-145+19759insAATATATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2124433	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0003 a0004c0011t0003	a0004c0011t0003g0111 a0004c0011t0003g0111	1	116	0.0086	14	c.-14 others(35): Show c.-145+23821_-145+23834dupACACACACACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2125330	C C	CTCTCTGT others(7): Show CTCTCTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0022 a0001c0022	a0001c0022t0003 a0001c0022t0003	a0001c0022t0003g0083 a0001c0022t0003g0083	1	116	0.0086	14	c.-14 others(35): Show c.-145+24692_-145+24693insCTCTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2125330	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0098 a0001c0001t0005g0098	1	116	0.0086	14	c.-14 others(35): Show c.-145+24713_-145+24726dupGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2270463	T T	TATATATA others(7): Show TATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02257.hp1 HG02897.hp2 HG01243.hp2 HG02257.hp1 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0022 a0001c0001 a0001c0002 a0001c0022	a0001c0001t0003 a0001c0002t0002 a0001c0022t0003 a0001c0001t0003 a0001c0002t0002 a0001c0022t0003	a0001c0001t0003g0006 a0001c0002t0002g0102 a0001c0022t0003g0083 a0001c0001t0003g0006 a0001c0002t0002g0102 a0001c0022t0003g0083	3	116	0.0259	14	c.-14 others(35): Show c.-144-68709_-144-68708insATATACACATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2294288	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0002 a0001c0002t0005g0002	1	116	0.0086	14	c.-14 others(35): Show c.-144-44888_-144-44875dupTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATAGAGA others(7): Show TATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	116	0.0086	14	c.-89 others(31): Show c.-89+1478_-89+1479insTAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(7): Show TATATATATATATAG	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0115 a0001c0001t0005g0115	1	116	0.0086	14	c.-89 others(31): Show c.-89+1478_-89+1479insTATATATATATAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2390215	A A	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02451.hp1 HG02559.hp2 others(1): Show HG02257.hp2 HG02451.hp1 HG02559.hp2 HG02886.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0001c0006 a0009c0027 a0001c0001 a0001c0006 a0009c0027	a0001c0001t0002 a0001c0001t0008 a0001c0006t0002 others(1): Show a0001c0001t0002 a0001c0001t0008 a0001c0006t0002 a0009c0027t0001	a0001c0001t0002g0030 a0001c0001t0008g0089 a0001c0006t0002g0051 others(1): Show a0001c0001t0002g0030 a0001c0001t0008g0089 a0001c0006t0002g0051 a0009c0027t0001g0007	4	116	0.0345	14	c.-89 others(33): Show c.-89+51005_-89+51018dupGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400418	T T	TATATATA others(7): Show TATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0035 a0001c0002t0002g0035	1	116	0.0086	14	c.-89 others(33): Show c.-89+61194_-89+61195insTATACATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400420	T T	TATATATA others(7): Show TATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0016 a0001c0007t0016	a0001c0007t0016g0105 a0001c0007t0016g0105	1	116	0.0086	14	c.-89 others(33): Show c.-89+61194_-89+61195insTATATACATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2801103	A A	AAGTTCCA others(7): Show AAGTTCCACAAGGGC	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp2 HG01258.hp1 others(2): Show HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01978.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0005 a0001c0004t0001 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0004t0001 a0001c0004t0006	a0001c0001t0001g0050 a0001c0001t0005g0098 a0001c0004t0001g0097 others(2): Show a0001c0001t0001g0050 a0001c0001t0005g0098 a0001c0004t0001g0097 a0001c0004t0001g0106 a0001c0004t0006g0044	5	116	0.0431	14	c.359 others(33): Show c.359-18380_359-18367dupTTCCACAAGGGCAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2820961	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0006 a0001c0001t0003g0006	1	116	0.0086	14	c.454 others(31): Show c.454+1385_454+1398dupTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2864740	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01891.hp1 HG03516.hp1 HG01884.hp2 HG01891.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0009 a0001c0002t0001 a0001c0005t0001 a0001c0001t0009 a0001c0002t0001 a0001c0005t0001	a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0005t0001g0090 a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0005t0001g0090	3	116	0.0259	14	c.455 others(31): Show c.455-2010_455-1997dupAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2878553	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01243.hp1 HG01884.hp1 others(4): Show HG00735.hp1 HG01243.hp1 HG01884.hp1 HG02074.hp1 HG02132.hp1 HG02602.hp1 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0009 a0001c0025	a0001c0001t0001 a0001c0001t0008 a0001c0002t0002 others(4): Show a0001c0001t0001 a0001c0001t0008 a0001c0002t0002 a0001c0003t0003 a0001c0004t0001 a0001c0009t0004 a0001c0025t0001	a0001c0001t0001g0012 a0001c0001t0008g0053 a0001c0002t0002g0078 others(4): Show a0001c0001t0001g0012 a0001c0001t0008g0053 a0001c0002t0002g0078 a0001c0003t0003g0046 a0001c0004t0001g0036 a0001c0009t0004g0005 a0001c0025t0001g0100	7	116	0.0603	14	c.653 others(31): Show c.653-4568_653-4555dupGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2961231	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00642.hp2 others(13): Show HG00140.hp1 HG00140.hp2 HG00642.hp2 HG01169.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp2 HG02257.hp2 HG02258.hp2 HG02559.hp1 HG02615.hp2 HG02897.hp1 HG02965.hp2 HG03041.hp1 HG03209.hp2 HG03654.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0006c0028	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0002t0005 a0001c0003t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0007t0003 a0001c0007t0016 a0006c0028t0001	a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0099 others(13): Show a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0099 a0001c0001t0002g0028 a0001c0001t0003g0101 a0001c0001t0008g0089 a0001c0002t0005g0002 a0001c0003t0002g0073 a0001c0003t0002g0107 a0001c0004t0006g0044 a0001c0005t0001g0092 a0001c0005t0001g0104 a0001c0005t0006g0032 a0001c0007t0003g0034 a0001c0007t0016g0105 a0006c0028t0001g0023	16	116	0.1379	14	c.135 others(35): Show c.1359-27108_1359-27095dupAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994594	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01361.hp1 HG01261.hp2 HG01361.hp1	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0003 a0004c0011t0003	a0004c0011t0003g0065 a0004c0011t0003g0111 a0004c0011t0003g0065 a0004c0011t0003g0111	2	116	0.0172	14	c.148 others(33): Show c.1486+6129_1486+6142dupATATATATATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994613	A A	ATATATAT others(7): Show ATATATATATATATG	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp2 HG01256.hp1 HG01258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0018 a0001c0001t0005g0019	2	116	0.0172	14	c.148 others(33): Show c.1486+6142_1486+6143insATATATATATATGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99131115	A A	AGCTGGGC others(7): Show AGCTGGGCCTGGTGG	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp2 HG00735.hp1 others(62): Show HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01496.hp1 HG01496.hp2 HG01934.hp1 HG01934.hp2 HG02004.hp1 HG02004.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02602.hp1 HG02602.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03471.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18939.hp1 NA18939.hp2 NA18957.hp1 NA18957.hp2 NA19000.hp1 NA19000.hp2 NA19043.hp1 NA19043.hp2 NA19070.hp1 NA19070.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0009 a0010 a0011 a0012	a0001c0001 a0002c0002 a0003c0003 others(9): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0009c0012 a0010c0010 a0011c0009 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(37): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0002c0002t0001 a0002c0002t0003 a0002c0002t0004 a0002c0002t0005 a0002c0002t0008 a0002c0002t0021 a0002c0002t0022 a0003c0003t0002 a0003c0003t0007 a0003c0003t0017 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0004c0004t0020 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0001 a0006c0006t0009 a0006c0006t0011 a0006c0006t0013 a0006c0006t0014 a0007c0007t0023 a0009c0012t0008 a0010c0010t0011 a0011c0009t0005 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0020 others(62): Show a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0003g0060 a0001c0001t0004g0010 a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0005g0014 a0001c0001t0005g0048 a0001c0001t0006g0032 a0001c0001t0006g0040 a0001c0001t0006g0066 a0001c0001t0009g0043 a0001c0001t0009g0063 a0001c0001t0010g0023 a0001c0001t0010g0047 a0001c0001t0011g0062 a0001c0001t0012g0018 a0001c0001t0012g0030 a0001c0001t0014g0016 a0001c0001t0015g0064 a0001c0001t0016g0049 a0002c0002t0001g0003 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0004g0007 a0002c0002t0004g0039 a0002c0002t0005g0015 a0002c0002t0008g0019 a0002c0002t0021g0055 a0002c0002t0022g0013 a0003c0003t0002g0002 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0027 a0003c0003t0002g0061 a0003c0003t0007g0034 a0003c0003t0007g0057 a0003c0003t0017g0065 a0003c0011t0019g0059 a0004c0004t0002g0001 a0004c0004t0002g0041 a0004c0004t0002g0051 a0004c0004t0013g0050 a0004c0004t0020g0024 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0001g0005 a0006c0006t0009g0042 a0006c0006t0011g0033 a0006c0006t0013g0025 a0006c0006t0014g0058 a0007c0007t0023g0046 a0009c0012t0008g0026 a0010c0010t0011g0009 a0011c0009t0005g0056 a0012c0013t0008g0031	65	66	0.9849	14	c.-21 others(37): Show c.-210+109845_-210+109846insGCTGGGCCTGGTGG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99338919	G G	GATATATA others(7): Show GATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	66	0.0152	14	c.-71 others(33): Show c.-71+13450_-71+13463dupATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99382844	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02965.hp2 NA18522.hp1 HG01099.hp2 HG02965.hp2 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0003 a0002c0002t0004 a0001c0001t0003 a0002c0002t0003 a0002c0002t0004	a0001c0001t0003g0022 a0002c0002t0003g0037 a0002c0002t0004g0007 a0001c0001t0003g0022 a0002c0002t0003g0037 a0002c0002t0004g0007	3	66	0.0455	14	c.-71 others(33): Show c.-71+57360_-71+57361insTTTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99382845	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01169.hp2 NA19000.hp1 HG00735.hp2 HG01169.hp2 NA19000.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0006c0006 a0001c0001 a0006c0006	a0001c0001t0011 a0006c0006t0001 a0006c0006t0014 a0001c0001t0011 a0006c0006t0001 a0006c0006t0014	a0001c0001t0011g0062 a0006c0006t0001g0005 a0006c0006t0014g0058 a0001c0001t0011g0062 a0006c0006t0001g0005 a0006c0006t0014g0058	3	66	0.0455	14	c.-71 others(33): Show c.-71+57378_-71+57391dupTTTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99408448	G G	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0030 a0001c0001t0012g0030	1	66	0.0152	14	c.-71 others(33): Show c.-71+82965_-71+82966insAAGAAAGAAAGAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99508686	C C	CTTTCTTT others(7): Show CTTTCTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0043 a0001c0001t0009g0043	1	66	0.0152	14	c.-70 others(33): Show c.-70-47456_-70-47455insCTTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99553977	C C	CACACACA others(7): Show CACACACACACACAT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0044 a0001c0001t0004g0044	1	66	0.0152	14	c.-70 others(31): Show c.-70-2155_-70-2154insTACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99553979	C C	CACACACA others(7): Show CACACACACACACAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00738.hp2 HG01081.hp1 others(22): Show HG00735.hp2 HG00738.hp2 HG01081.hp1 HG01099.hp1 HG01123.hp2 HG01169.hp1 HG01496.hp2 HG02004.hp2 HG02109.hp1 HG02132.hp2 HG02258.hp1 HG02258.hp2 HG02602.hp1 HG02895.hp1 HG02895.hp2 HG02976.hp2 HG03130.hp1 HG03471.hp2 HG06807.hp2 NA18522.hp1 NA18939.hp1 NA18957.hp1 NA18957.hp2 NA19000.hp1 NA19000.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0006 a0010	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0010c0010	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(15): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0002c0002t0004 a0002c0002t0005 a0003c0003t0002 a0003c0003t0017 a0004c0004t0002 a0004c0004t0013 a0005c0005t0001 a0005c0005t0003 a0005c0005t0010 a0005c0005t0018 a0006c0006t0014 a0010c0010t0011	a0001c0001t0001g0004 a0001c0001t0001g0020 a0001c0001t0001g0052 others(22): Show a0001c0001t0001g0004 a0001c0001t0001g0020 a0001c0001t0001g0052 a0001c0001t0004g0010 a0001c0001t0004g0029 a0001c0001t0006g0066 a0001c0001t0009g0043 a0001c0001t0011g0062 a0001c0001t0012g0018 a0002c0002t0004g0007 a0002c0002t0005g0015 a0003c0003t0002g0002 a0003c0003t0002g0012 a0003c0003t0017g0065 a0004c0004t0002g0001 a0004c0004t0002g0041 a0004c0004t0002g0051 a0004c0004t0013g0050 a0005c0005t0001g0017 a0005c0005t0001g0035 a0005c0005t0003g0045 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0014g0058 a0010c0010t0011g0009	25	66	0.3788	14	c.-70 others(31): Show c.-70-2153_-70-2152insTACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99637010	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02723.hp1 HG02965.hp1 others(2): Show HG02602.hp1 HG02723.hp1 HG02965.hp1 NA18957.hp1 NA20300.hp2	a0001 a0006 a0012 a0001 a0006 a0012	a0001c0001 a0006c0006 a0012c0013 a0001c0001 a0006c0006 a0012c0013	a0001c0001t0001 a0001c0001t0006 a0006c0006t0011 others(1): Show a0001c0001t0001 a0001c0001t0006 a0006c0006t0011 a0012c0013t0008	a0001c0001t0001g0008 a0001c0001t0001g0052 a0001c0001t0006g0066 others(2): Show a0001c0001t0001g0008 a0001c0001t0001g0052 a0001c0001t0006g0066 a0006c0006t0011g0033 a0012c0013t0008g0031	5	66	0.0758	14	c.55+ others(31): Show c.55+80759_55+80772dupAAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99738615	A A	AAGTGTGT others(7): Show AAGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0039 a0002c0002t0004g0039	1	66	0.0152	14	c.56- others(31): Show c.56-80929_56-80928insAGTGTGTGTGTGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99738616	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01169.hp1 HG02004.hp2 others(3): Show HG00735.hp2 HG01169.hp1 HG02004.hp2 HG02109.hp2 HG02965.hp2 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0001t0011	a0001c0001t0001g0004 a0001c0001t0001g0052 a0001c0001t0003g0021 others(3): Show a0001c0001t0001g0004 a0001c0001t0001g0052 a0001c0001t0003g0021 a0001c0001t0003g0022 a0001c0001t0009g0043 a0001c0001t0011g0062	6	66	0.0909	14	c.56- others(31): Show c.56-80915_56-80902dupGTGTGTGTGTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar

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