Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN5_chr11_99015949_100363885	99792538	G G	GGGGGGTG others(7): Show GGGGGGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0023 a0001c0001t0010g0023	1	66	0.0152	14	c.56- others(31): Show c.56-27005_56-27004insGGGGTGTGTGTGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99792573	G G	GTGTGTGT others(7): Show GTGTGTGTGTCTGTC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02965.hp1 HG02723.hp1 HG02965.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0006c0006 a0001c0001 a0006c0006	a0001c0001t0001 a0006c0006t0011 a0001c0001t0001 a0006c0006t0011	a0001c0001t0001g0008 a0006c0006t0011g0033 a0001c0001t0001g0008 a0006c0006t0011g0033	2	66	0.0303	14	c.56- others(31): Show c.56-26968_56-26967insGTGTGTCTGTCTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99792573	G G	GTGTGTGT others(7): Show GTGTGTGTGTGTGTC	intron_variant intron_variant	MODIFIER	HG02257.hp1 NA19000.hp2 HG02257.hp1 NA19000.hp2	a0005 a0009 a0005 a0009	a0005c0005 a0009c0016 a0005c0005 a0009c0016	a0005c0005t0002 a0009c0016t0019 a0005c0005t0002 a0009c0016t0019	a0005c0005t0002g0001 a0009c0016t0019g0059 a0005c0005t0002g0001 a0009c0016t0019g0059	2	66	0.0303	14	c.56- others(31): Show c.56-26968_56-26967insGTGTGTGTGTCTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99846129	G G	GACACACA others(7): Show GACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0021 a0002c0002t0021	a0002c0002t0021g0055 a0002c0002t0021g0055	1	66	0.0152	14	c.577 others(29): Show c.577+886_577+899dupACACACACACACAC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99930796	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01243.hp1 HG02602.hp1 HG00735.hp1 HG01243.hp1 HG02602.hp1	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0002c0002 a0007c0011 a0001c0001 a0002c0002 a0007c0011	a0001c0001t0006 a0002c0002t0004 a0007c0011t0009 a0001c0001t0006 a0002c0002t0004 a0007c0011t0009	a0001c0001t0006g0066 a0002c0002t0004g0039 a0007c0011t0009g0042 a0001c0001t0006g0066 a0002c0002t0004g0039 a0007c0011t0009g0042	3	66	0.0455	14	c.673 others(33): Show c.673+14657_673+14670dupCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99981077	G G	GATATATA others(7): Show GATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01081.hp2 HG02258.hp1 others(2): Show HG00738.hp2 HG01081.hp2 HG02258.hp1 NA18939.hp2 NA18957.hp2	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0010 a0014	a0001c0001 a0003c0003 a0005c0005 others(2): Show a0001c0001 a0003c0003 a0005c0005 a0010c0013 a0014c0009	a0001c0001t0010 a0003c0003t0002 a0005c0005t0002 others(2): Show a0001c0001t0010 a0003c0003t0002 a0005c0005t0002 a0010c0013t0011 a0014c0009t0023	a0001c0001t0010g0047 a0003c0003t0002g0002 a0005c0005t0002g0041 others(2): Show a0001c0001t0010g0047 a0003c0003t0002g0002 a0005c0005t0002g0041 a0010c0013t0011g0009 a0014c0009t0023g0046	5	66	0.0758	14	c.878 others(33): Show c.878-20943_878-20930dupTATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99990447	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03130.hp1 HG02976.hp2 HG03130.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0017 a0004c0004t0001g0035 a0004c0004t0001g0017 a0004c0004t0001g0035	2	66	0.0303	14	c.878 others(33): Show c.878-11586_878-11585insCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99990453	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02965.hp2 HG02886.hp1 HG02965.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0003 a0003c0003t0002 a0001c0001t0003 a0003c0003t0002	a0001c0001t0003g0022 a0003c0003t0002g0027 a0001c0001t0003g0022 a0003c0003t0002g0027	2	66	0.0303	14	c.878 others(33): Show c.878-11580_878-11579insCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100072990	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0013 a0013	a0013c0008 a0013c0008	a0013c0008t0007 a0013c0008t0007	a0013c0008t0007g0038 a0013c0008t0007g0038	1	66	0.0152	14	c.143 others(33): Show c.1430-1146_1430-1133dupAAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	12/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100161830	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02735.hp2 HG01496.hp2 HG02735.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0012 a0003c0003t0002 a0001c0001t0012 a0003c0003t0002	a0001c0001t0012g0018 a0003c0003t0002g0061 a0001c0001t0012g0018 a0003c0003t0002g0061	2	66	0.0303	14	c.158 others(35): Show c.1581-29266_1581-29253dupCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100161830	T T	TACACATA others(7): Show TACACATACACACAC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	66	0.0152	14	c.158 others(35): Show c.1581-29291_1581-29290insTACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100203799	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02132.hp1 HG02132.hp2 others(5): Show HG02004.hp1 HG02132.hp1 HG02132.hp2 HG02258.hp2 HG02723.hp2 HG03041.hp1 HG03130.hp2 NA18957.hp1	a0001 a0004 a0005 others(1): Show a0001 a0004 a0005 a0012	a0001c0001 a0004c0004 a0005c0005 others(1): Show a0001c0001 a0004c0004 a0005c0005 a0012c0014	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0016 a0004c0004t0003 a0005c0005t0002 a0012c0014t0008	a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0004g0044 others(5): Show a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0004g0044 a0001c0001t0006g0040 a0001c0001t0016g0049 a0004c0004t0003g0045 a0005c0005t0002g0051 a0012c0014t0008g0026	8	66	0.1212	14	c.188 others(35): Show c.1884+10155_1884+10168dupACACACACACACAC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100204297	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02132.hp2 NA18957.hp2 HG02132.hp2 NA18957.hp2	a0003 a0005 a0003 a0005	a0003c0003 a0005c0005 a0003c0003 a0005c0005	a0003c0003t0002 a0005c0005t0002 a0003c0003t0002 a0005c0005t0002	a0003c0003t0002g0002 a0005c0005t0002g0051 a0003c0003t0002g0002 a0005c0005t0002g0051	2	66	0.0303	14	c.188 others(35): Show c.1884+10668_1884+10681dupTATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100267253	C C	CCACACAC others(7): Show CCACACACACACACA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01099.hp2 HG03471.hp1 others(1): Show HG00738.hp1 HG01099.hp2 HG03471.hp1 NA19043.hp2	a0002 a0013 a0002 a0013	a0002c0002 a0013c0008 a0002c0002 a0013c0008	a0002c0002t0003 a0002c0002t0008 a0013c0008t0007 a0002c0002t0003 a0002c0002t0008 a0013c0008t0007	a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0008g0019 others(1): Show a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0008g0019 a0013c0008t0007g0038	4	66	0.0606	14	c.216 others(33): Show c.2165-3824_2165-3811dupCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	17/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100267280	C C	CACACACA others(7): Show CACACACACACACAG	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01934.hp2 NA18939.hp2 others(2): Show HG01123.hp2 HG01934.hp2 NA18939.hp2 NA18957.hp1 NA19000.hp2	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0014	a0001c0001 a0003c0003 a0005c0005 others(1): Show a0001c0001 a0003c0003 a0005c0005 a0014c0009	a0001c0001t0001 a0003c0003t0002 a0005c0005t0002 others(1): Show a0001c0001t0001 a0003c0003t0002 a0005c0005t0002 a0014c0009t0023	a0001c0001t0001g0052 a0003c0003t0002g0011 a0003c0003t0002g0012 others(2): Show a0001c0001t0001g0052 a0003c0003t0002g0011 a0003c0003t0002g0012 a0005c0005t0002g0001 a0014c0009t0023g0046	5	66	0.0758	14	c.216 others(33): Show c.2165-3811_2165-3810insCACACACACACAGA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	17/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100342152	G G	GACACACA others(7): Show GACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02723.hp2 NA19043.hp1 HG02723.hp2 NA19043.hp1	a0001 a0015 a0001 a0015	a0001c0001 a0015c0012 a0001c0001 a0015c0012	a0001c0001t0004 a0015c0012t0005 a0001c0001t0004 a0015c0012t0005	a0001c0001t0004g0044 a0015c0012t0005g0056 a0001c0001t0004g0044 a0015c0012t0005g0056	2	66	0.0303	14	c.303 others(31): Show c.3030+965_3030+978dupCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	23/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1098787	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01978.hp1 HG03239.hp1 others(3): Show HG00741.hp1 HG01978.hp1 HG03239.hp1 HG03927.hp1 NA18747.hp1 NA19003.hp2	a0001 a0007 a0001 a0007	a0001c0002 a0001c0003 a0001c0007 others(1): Show a0001c0002 a0001c0003 a0001c0007 a0007c0021	a0001c0002t0001 a0001c0003t0001 a0001c0007t0001 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0007t0001 a0007c0021t0001	a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0176 others(3): Show a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0176 a0001c0003t0001g0144 a0001c0007t0001g0146 a0007c0021t0001g0148	6	232	0.0259	14	c.-83 others(31): Show c.-83+5668_-83+5669insTATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098789	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG03209.hp2 HG03834.hp1 others(2): Show HG02074.hp2 HG03209.hp2 HG03834.hp1 NA18969.hp2 NA18979.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0006c0026	a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 others(1): Show a0001c0001t0001 a0001c0003t0001 a0001c0004t0001 a0006c0026t0001	a0001c0001t0001g0088 a0001c0003t0001g0092 a0001c0004t0001g0089 others(2): Show a0001c0001t0001g0088 a0001c0003t0001g0092 a0001c0004t0001g0089 a0001c0004t0001g0090 a0006c0026t0001g0091	5	232	0.0216	14	c.-83 others(31): Show c.-83+5685_-83+5698dupTATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1119322	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01071.hp2 HG01099.hp1 others(14): Show HG01070.hp1 HG01071.hp2 HG01099.hp1 HG01952.hp1 HG02055.hp1 HG02055.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02258.hp1 HG02615.hp2 HG03225.hp2 NA18747.hp1 NA19030.hp2 NA20752.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0007 a0001c0012 a0002c0014 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 others(9): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 a0001c0002t0008 a0001c0003t0001 a0001c0004t0001 a0001c0006t0001 a0001c0006t0004 a0001c0007t0001 a0001c0012t0001 a0002c0014t0001 a0003c0015t0001	a0001c0001t0001g0029 a0001c0001t0001g0204 a0001c0002t0001g0108 others(14): Show a0001c0001t0001g0029 a0001c0001t0001g0204 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0145 a0001c0002t0007g0059 a0001c0002t0008g0221 a0001c0003t0001g0031 a0001c0003t0001g0074 a0001c0004t0001g0073 a0001c0006t0001g0111 a0001c0006t0004g0119 a0001c0007t0001g0222 a0001c0012t0001g0085 a0002c0014t0001g0220 a0003c0015t0001g0007 a0003c0015t0001g0008	17	232	0.0733	14	c.-83 others(33): Show c.-83+26220_-83+26233dupTGTGTGTGTGTGTG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1201097	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0164 a0001c0005t0001g0164	1	232	0.0043	14	c.56- others(31): Show c.56-19589_56-19588insGTGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1201099	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG04115.hp1 HG00609.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0171 a0001c0001t0001g0024 a0001c0001t0001g0171	2	232	0.0086	14	c.56- others(31): Show c.56-19554_56-19541dupGTGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245223	T T	TAACATAT others(7): Show TAACATATATATATA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02486.hp2 HG02976.hp2 others(3): Show HG02280.hp1 HG02486.hp2 HG02976.hp2 HG03579.hp1 NA18906.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0005 a0001c0007 a0001c0008 others(2): Show a0001c0005 a0001c0007 a0001c0008 a0001c0013 a0002c0011	a0001c0005t0001 a0001c0007t0001 a0001c0008t0001 others(2): Show a0001c0005t0001 a0001c0007t0001 a0001c0008t0001 a0001c0013t0001 a0002c0011t0001	a0001c0005t0001g0207 a0001c0007t0001g0012 a0001c0008t0001g0143 others(3): Show a0001c0005t0001g0207 a0001c0007t0001g0012 a0001c0008t0001g0143 a0001c0008t0001g0211 a0001c0013t0001g0199 a0002c0011t0001g0006	6	232	0.0259	14	c.358 others(33): Show c.358+17231_358+17232insACATATATATATAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp2 HG01109.hp1 others(7): Show HG00639.hp1 HG00642.hp2 HG01109.hp1 HG02145.hp2 HG02148.hp1 HG02602.hp1 HG02630.hp1 HG02896.hp2 HG03579.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0006 others(1): Show a0001c0001 a0001c0005 a0001c0006 a0001c0007	a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 others(3): Show a0001c0001t0001 a0001c0005t0001 a0001c0005t0002 a0001c0006t0001 a0001c0006t0004 a0001c0007t0001	a0001c0001t0001g0013 a0001c0001t0001g0029 a0001c0001t0001g0153 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0029 a0001c0001t0001g0153 a0001c0005t0001g0016 a0001c0005t0001g0157 a0001c0005t0002g0019 a0001c0006t0001g0187 a0001c0006t0001g0210 a0001c0006t0004g0119 a0001c0007t0001g0012	10	232	0.0431	14	c.454 others(31): Show c.454+1961_454+1974dupTTTTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1308287	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18747.hp2 NA18972.hp1 NA18747.hp2 NA18972.hp1	a0001 a0001	a0001c0007 a0001c0008 a0001c0007 a0001c0008	a0001c0007t0006 a0001c0008t0001 a0001c0007t0006 a0001c0008t0001	a0001c0007t0006g0170 a0001c0008t0001g0075 a0001c0007t0006g0170 a0001c0008t0001g0075	2	232	0.0086	14	c.761 others(33): Show c.761+10319_761+10332dupTGTGTGTGTGTGTG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1348157	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02257.hp1 others(12): Show HG01884.hp1 HG02055.hp2 HG02257.hp1 HG02280.hp2 HG02809.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03453.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 others(3): Show a0001c0001 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0008	a0001c0001t0001 a0001c0003t0001 a0001c0005t0001 others(3): Show a0001c0001t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001	a0001c0001t0001g0198 a0001c0003t0001g0042 a0001c0003t0001g0177 others(12): Show a0001c0001t0001g0198 a0001c0003t0001g0042 a0001c0003t0001g0177 a0001c0005t0001g0005 a0001c0005t0001g0180 a0001c0006t0001g0036 a0001c0006t0001g0185 a0001c0007t0001g0012 a0001c0007t0001g0133 a0001c0007t0001g0134 a0001c0007t0001g0222 a0001c0008t0001g0010 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0214	15	232	0.0647	14	c.136 others(33): Show c.1365-4161_1365-4148dupAAAAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1406642	G G	GGGGTGTG others(7): Show GGGGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02738.hp2 HG03834.hp2 HG02738.hp2 HG03834.hp2	a0001 a0001	a0001c0004 a0001c0007 a0001c0004 a0001c0007	a0001c0004t0001 a0001c0007t0001 a0001c0004t0001 a0001c0007t0001	a0001c0004t0001g0066 a0001c0007t0001g0048 a0001c0004t0001g0066 a0001c0007t0001g0048	2	232	0.0086	14	c.32 others(25): Show c.3224_*3225insGGGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding		2426		chr3	TogoVar
CNTN6_chr3_1088024_1409217	1406642	G G	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp2 HG01517.hp2 HG03225.hp1 others(1): Show HG01175.hp2 HG01517.hp2 HG03225.hp1 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0007 others(1): Show a0001c0002 a0001c0005 a0001c0007 a0001c0013	a0001c0002t0002 a0001c0005t0001 a0001c0007t0002 others(1): Show a0001c0002t0002 a0001c0005t0001 a0001c0007t0002 a0001c0013t0001	a0001c0002t0002g0020 a0001c0005t0001g0193 a0001c0007t0002g0032 others(1): Show a0001c0002t0002g0020 a0001c0005t0001g0193 a0001c0007t0002g0032 a0001c0013t0001g0208	4	232	0.0172	14	c.32 others(25): Show c.3224_*3225insGTGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding		2426		chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146404124	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0016 a0001c0011t0016	a0001c0011t0016g0019 a0001c0011t0016g0019	1	40	0.0250	14	c.97+ others(33): Show c.97+287156_97+287169dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146404141	A A	AAAAAAAA others(7): Show AAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03225.hp2 HG02886.hp1 HG03225.hp2	a0001 a0001	a0001c0003 a0001c0018 a0001c0003 a0001c0018	a0001c0003t0013 a0001c0018t0002 a0001c0003t0013 a0001c0018t0002	a0001c0003t0013g0010 a0001c0018t0002g0012 a0001c0003t0013g0010 a0001c0018t0002g0012	2	40	0.0500	14	c.97+ others(33): Show c.97+287169_97+287170insAAAAAAAAAAAACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146422359	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 NA21309.hp1 HG01891.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0006 a0001c0010t0002 a0001c0001t0006 a0001c0010t0002	a0001c0001t0006g0009 a0001c0010t0002g0014 a0001c0001t0006g0009 a0001c0010t0002g0014	2	40	0.0500	14	c.97+ others(33): Show c.97+305399_97+305400insATATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146426185	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02976.hp2 HG02717.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0020 a0001c0005t0008 a0001c0003t0020 a0001c0005t0008	a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0003t0020g0017 a0001c0005t0008g0005	2	40	0.0500	14	c.97+ others(33): Show c.97+309224_97+309237dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146446392	G G	GAAACCCC others(7): Show GAAACCCCTTTCTTC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03098.hp2 HG03225.hp1 others(2): Show HG01891.hp2 HG03098.hp2 HG03225.hp1 NA18522.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0001c0010	a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 others(2): Show a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0009t0019 a0001c0010t0002	a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0002t0001g0021 others(2): Show a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0002t0001g0021 a0001c0009t0019g0027 a0001c0010t0002g0014	5	40	0.1250	14	c.98- others(33): Show c.98-327877_98-327876insACCCCTTTCTTCAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146665783	T T	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 NA18522.hp1 NA20129.hp1 others(1): Show HG00735.hp1 NA18522.hp1 NA20129.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0013 a0001c0001 a0001c0006 a0001c0013	a0001c0001t0018 a0001c0006t0009 a0001c0006t0014 others(1): Show a0001c0001t0018 a0001c0006t0009 a0001c0006t0014 a0001c0013t0003	a0001c0001t0018g0001 a0001c0006t0009g0028 a0001c0006t0014g0033 others(1): Show a0001c0001t0018g0001 a0001c0006t0009g0028 a0001c0006t0014g0033 a0001c0013t0003g0039	4	40	0.1000	14	c.98- others(33): Show c.98-108486_98-108473dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146721875	G G	GTGTGTAT others(7): Show GTGTGTATGTATATA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0005 a0001c0004t0005	a0001c0004t0005g0004 a0001c0004t0005g0004	1	40	0.0250	14	c.98- others(31): Show c.98-52395_98-52394insGTGTATGTATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146721889	A A	ATATTTTT others(7): Show ATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 NA18522.hp1 HG00735.hp2 NA18522.hp1	a0001 a0001	a0001c0013 a0001c0019 a0001c0013 a0001c0019	a0001c0013t0003 a0001c0019t0006 a0001c0013t0003 a0001c0019t0006	a0001c0013t0003g0039 a0001c0019t0006g0015 a0001c0013t0003g0039 a0001c0019t0006g0015	2	40	0.0500	14	c.98- others(31): Show c.98-52381_98-52380insATTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146721889	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0020 a0001c0001t0007g0020	1	40	0.0250	14	c.98- others(31): Show c.98-52378_98-52365dupTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147090322	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03225.hp1 HG02717.hp2 HG03225.hp1	a0001 a0001	a0001c0005 a0001c0009 a0001c0005 a0001c0009	a0001c0005t0008 a0001c0009t0019 a0001c0005t0008 a0001c0009t0019	a0001c0005t0008g0005 a0001c0009t0019g0027 a0001c0005t0008g0005 a0001c0009t0019g0027	2	40	0.0500	14	c.551 others(33): Show c.551-17808_551-17795dupGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147341070	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0017 a0005c0007t0017	a0005c0007t0017g0031 a0005c0007t0017g0031	1	40	0.0250	14	c.149 others(35): Show c.1498+40788_1498+40801dupGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147421585	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03239.hp1 NA20129.hp1 HG03239.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0006 a0005c0007 a0001c0006 a0005c0007	a0001c0006t0009 a0005c0007t0017 a0001c0006t0009 a0005c0007t0017	a0001c0006t0009g0028 a0005c0007t0017g0031 a0001c0006t0009g0028 a0005c0007t0017g0031	2	40	0.0500	14	c.167 others(35): Show c.1670+25821_1670+25834dupGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147486889	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02922.hp2 HG00735.hp2 HG02922.hp2	a0001 a0001	a0001c0004 a0001c0019 a0001c0004 a0001c0019	a0001c0004t0005 a0001c0019t0006 a0001c0004t0005 a0001c0019t0006	a0001c0004t0005g0004 a0001c0019t0006g0015 a0001c0004t0005g0004 a0001c0019t0006g0015	2	40	0.0500	14	c.177 others(31): Show c.1777+862_1777+875dupGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147510850	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03225.hp2 HG02630.hp1 HG03225.hp2	a0001 a0001	a0001c0012 a0001c0018 a0001c0012 a0001c0018	a0001c0012t0004 a0001c0018t0002 a0001c0012t0004 a0001c0018t0002	a0001c0012t0004g0026 a0001c0018t0002g0012 a0001c0012t0004g0026 a0001c0018t0002g0012	2	40	0.0500	14	c.177 others(35): Show c.1777+24817_1777+24830dupTATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147527015	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02486.hp2 HG03225.hp2 HG01891.hp2 HG02486.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0018 a0001c0001 a0001c0003 a0001c0018	a0001c0001t0006 a0001c0003t0011 a0001c0018t0002 a0001c0001t0006 a0001c0003t0011 a0001c0018t0002	a0001c0001t0006g0009 a0001c0003t0011g0023 a0001c0018t0002g0012 a0001c0001t0006g0009 a0001c0003t0011g0023 a0001c0018t0002g0012	3	40	0.0750	14	c.177 others(35): Show c.1778-35109_1778-35096dupTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147560168	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02886.hp2 HG02717.hp2 HG02886.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0008 a0001c0005t0022 a0001c0005t0008 a0001c0005t0022	a0001c0005t0008g0005 a0001c0005t0022g0032 a0001c0005t0008g0005 a0001c0005t0022g0032	2	40	0.0500	14	c.177 others(33): Show c.1778-1960_1778-1947dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147583531	T T	TATATATA others(7): Show TATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	40	0.0250	14	c.189 others(35): Show c.1897+21275_1897+21276insTATATATATATAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147586519	A A	AGAGAGAA others(7): Show AGAGAGAAGAGGGAG	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0020 a0001c0003t0020	a0001c0003t0020g0017 a0001c0003t0020g0017	1	40	0.0250	14	c.189 others(35): Show c.1897+24264_1897+24265insGAGAAGAGGGAGGA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147839939	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0020 a0001c0001t0007g0020	1	40	0.0250	14	c.209 others(35): Show c.2099-63622_2099-63609dupCACACACACACACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147860589	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02486.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0003t0011 a0001c0002t0002 a0001c0003t0011	a0001c0002t0002g0013 a0001c0003t0011g0023 a0001c0002t0002g0013 a0001c0003t0011g0023	2	40	0.0500	14	c.209 others(35): Show c.2099-42975_2099-42962dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147925154	A A	AGAGAAGG others(7): Show AGAGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp2 NA21309.hp1 HG03239.hp1 HG03239.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0001c0010 a0005c0007 a0001c0002 a0001c0010 a0005c0007	a0001c0002t0002 a0001c0010t0002 a0005c0007t0017 a0001c0002t0002 a0001c0010t0002 a0005c0007t0017	a0001c0002t0002g0040 a0001c0010t0002g0014 a0005c0007t0017g0031 a0001c0002t0002g0040 a0001c0010t0002g0014 a0005c0007t0017g0031	3	40	0.0750	14	c.225 others(35): Show c.2255+21435_2255+21436insGAAGGAAGGAAGGA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147949440	G G	GTGTATAT others(7): Show GTGTATATATATATA	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 NA18522.hp2 HG02896.hp2 HG02897.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0007 a0001c0004t0003 a0001c0001t0007 a0001c0004t0003	a0001c0001t0007g0018 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0001t0007g0018 a0001c0004t0003g0035 a0001c0004t0003g0036	3	40	0.0750	14	c.225 others(35): Show c.2256-28421_2256-28420insGTATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147973160	T T	TAAAAAAA others(7): Show TAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0003g0035 a0001c0004t0003g0036	2	40	0.0500	14	c.225 others(33): Show c.2256-4694_2256-4681dupAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr7	TogoVar

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