Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CSMD3_chr8_112217928_113441939	113328735	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0001 a0007c0009t0001	a0007c0009t0001g0048 a0007c0009t0001g0048	1	80	0.0125	14	c.179 others(33): Show c.179-13956_179-13943dupAAAAAAAAAAAAAA	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113375536	C C	CACACACA others(7): Show CACACACACACACAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0015 a0001c0001t0004g0015	1	80	0.0125	14	c.179 others(33): Show c.179-60744_179-60743insATGTGTGTGTGTGT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113378762	A A	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01261.hp2 NA18944.hp1 HG01261.hp2 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0002 a0001c0001t0007	a0001c0001t0002g0014 a0001c0001t0007g0041 a0001c0001t0002g0014 a0001c0001t0007g0041	2	80	0.0250	14	c.178 others(33): Show c.178+57901_178+57914dupACACACACACACAC	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113399106	T T	TATATATA others(7): Show TATATATACACACAC	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0011 a0011	a0011c0035 a0011c0035	a0011c0035t0001 a0011c0035t0001	a0011c0035t0001g0003 a0011c0035t0001g0003	1	80	0.0125	14	c.178 others(33): Show c.178+37570_178+37571insGTGTGTGTATATAT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113399106	T T	TATATATA others(7): Show TATATATATACACAC	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0028 a0004c0004t0001g0028	1	80	0.0125	14	c.178 others(33): Show c.178+37570_178+37571insGTGTGTATATATAT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113399106	T T	TATATATA others(7): Show TATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0045 a0001c0001t0007g0045	1	80	0.0125	14	c.178 others(33): Show c.178+37570_178+37571insGTATATATATATAT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSN2_chr4_69950256_69970728	69965408	C C	CTATATAT others(7): Show CTATATATATATATA	intron_variant intron_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	448	0.0022	14	c.-13 others(29): Show c.-13+259_-13+272dupTATATATATATATA	CSN2	ENSG00000135222.7	transcript	ENST00000353151.4	protein_coding	1/7			chr4	TogoVar
CSN3_chr4_70237597_70256432	70254285	A A	AACACACA others(7): Show AACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp2 HG02965.hp1 HG02970.hp1 others(1): Show HG02559.hp2 HG02965.hp1 HG02970.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0010 a0001c0001t0001g0001 a0001c0001t0001g0010	4	464	0.0086	14	c.30 others(25): Show c.3058_*3059insACACACACACACAC	CSN3	ENSG00000171209.4	transcript	ENST00000304954.4	protein_coding		2854		chr4	TogoVar
CSNK1A1_chr5_149487982_149556439	149530965	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG04204.hp1 NA18939.hp2 NA19089.hp2 HG04204.hp1 NA18939.hp2 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0023 a0001c0001t0001g0080 a0001c0001t0004g0234 a0001c0001t0001g0023 a0001c0001t0001g0080 a0001c0001t0004g0234	3	390	0.0077	14	c.231 others(31): Show c.231-5795_231-5794insTTTTTTTTTTTTTT	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1A1_chr5_149487982_149556439	149544735	C C	CTATATAT others(7): Show CTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01081.hp1 HG01952.hp1 others(8): Show HG01069.hp2 HG01081.hp1 HG01952.hp1 HG01975.hp1 HG02055.hp1 HG02155.hp1 HG02717.hp1 HG03130.hp2 NA18975.hp2 NA18979.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0011 a0001c0001t0029 others(1): Show a0001c0001t0002 a0001c0001t0011 a0001c0001t0029 a0001c0001t0055	a0001c0001t0002g0333 a0001c0001t0002g0334 a0001c0001t0002g0337 others(8): Show a0001c0001t0002g0333 a0001c0001t0002g0334 a0001c0001t0002g0337 a0001c0001t0002g0338 a0001c0001t0002g0342 a0001c0001t0002g0343 a0001c0001t0011g0335 a0001c0001t0011g0339 a0001c0001t0011g0340 a0001c0001t0029g0336 a0001c0001t0055g0341	11	390	0.0282	14	c.230 others(31): Show c.230+5339_230+5340insTATATATATATATA	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1A1_chr5_149487982_149556439	149544737	T T	TTATATAT others(7): Show TTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02074.hp1 HG02630.hp2 others(6): Show HG01496.hp1 HG02074.hp1 HG02630.hp2 HG03471.hp2 NA18747.hp2 NA18957.hp2 NA19043.hp1 NA19055.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0015 others(1): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0015 a0001c0001t0035	a0001c0001t0003g0326 a0001c0001t0003g0327 a0001c0001t0005g0287 others(6): Show a0001c0001t0003g0326 a0001c0001t0003g0327 a0001c0001t0005g0287 a0001c0001t0005g0289 a0001c0001t0005g0290 a0001c0001t0005g0291 a0001c0001t0015g0003 a0001c0001t0015g0004 a0001c0001t0035g0288	9	390	0.0231	14	c.230 others(31): Show c.230+5324_230+5337dupTATATATATATATA	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1A1_chr5_149487982_149556439	149544758	T T	TATATATA others(7): Show TATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02486.hp1 HG03486.hp1 HG01255.hp1 HG02486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0018g0099 a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0018g0099	3	390	0.0077	14	c.230 others(31): Show c.230+5316_230+5317insGTGTATATATATAT	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1D_chr17_82237667_82278700	82273274	T T	TCGGGCGG others(7): Show TCGGGCGGCGGGCGG	intron_variant intron_variant	MODIFIER	HG02886.hp1 NA19240.hp1 NA21309.hp1 HG02886.hp1 NA19240.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0036 a0001c0001t0009g0239 a0001c0001t0009g0036 a0001c0001t0009g0239	3	320	0.0094	14	c.76+ others(25): Show c.76+18_76+31dupCCGCCCGCCGCCCG	CSNK1D	ENSG00000141551.15	transcript	ENST00000314028.11	protein_coding	1/8			chr17	TogoVar
CSNK1E_chr22_38285691_38322433	38290472	C C	CGCGTGGC others(7): Show CGCGTGGCACCTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG00323.hp1 others(62): Show HG00099.hp2 HG00280.hp2 HG00323.hp1 HG00639.hp1 HG00642.hp1 HG00738.hp1 HG01069.hp1 HG01071.hp1 HG01099.hp1 HG01099.hp2 HG01169.hp2 HG01243.hp1 HG01256.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01496.hp2 HG01515.hp2 HG01884.hp2 HG02004.hp2 HG02015.hp1 HG02074.hp2 HG02109.hp1 HG02109.hp2 HG02148.hp1 HG02257.hp1 HG02258.hp1 HG02280.hp1 HG02300.hp1 HG02451.hp2 HG02486.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp2 HG03688.hp1 HG04204.hp2 HG06807.hp1 NA18981.hp2 NA19030.hp1 NA19030.hp2 NA20300.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0013 a0001c0001t0016 a0001c0001t0022 a0001c0001t0027 a0001c0001t0028 a0001c0001t0035 a0001c0001t0037 a0001c0001t0048 a0001c0001t0050 a0001c0001t0056 a0001c0001t0072 a0001c0001t0079 a0001c0001t0084 a0001c0001t0086 a0001c0001t0096 a0001c0001t0097 a0001c0001t0104	a0001c0001t0001g0024 a0001c0001t0001g0073 a0001c0001t0001g0115 others(50): Show a0001c0001t0001g0024 a0001c0001t0001g0073 a0001c0001t0001g0115 a0001c0001t0002g0002 a0001c0001t0002g0012 a0001c0001t0002g0203 a0001c0001t0003g0004 a0001c0001t0003g0018 a0001c0001t0003g0065 a0001c0001t0004g0007 a0001c0001t0004g0217 a0001c0001t0004g0259 a0001c0001t0004g0260 a0001c0001t0004g0261 a0001c0001t0005g0177 a0001c0001t0005g0248 a0001c0001t0006g0006 a0001c0001t0006g0034 a0001c0001t0006g0175 a0001c0001t0006g0189 a0001c0001t0006g0195 a0001c0001t0007g0047 a0001c0001t0007g0305 a0001c0001t0008g0029 a0001c0001t0008g0071 a0001c0001t0008g0117 a0001c0001t0009g0039 a0001c0001t0009g0044 a0001c0001t0009g0197 a0001c0001t0011g0289 a0001c0001t0013g0015 a0001c0001t0013g0016 a0001c0001t0013g0064 a0001c0001t0013g0126 a0001c0001t0016g0090 a0001c0001t0016g0136 a0001c0001t0022g0013 a0001c0001t0027g0229 a0001c0001t0028g0245 a0001c0001t0028g0246 a0001c0001t0035g0158 a0001c0001t0035g0185 a0001c0001t0037g0191 a0001c0001t0048g0074 a0001c0001t0050g0131 a0001c0001t0056g0061 a0001c0001t0072g0159 a0001c0001t0079g0151 a0001c0001t0084g0222 a0001c0001t0086g0264 a0001c0001t0096g0303 a0001c0001t0097g0291 a0001c0001t0104g0310	65	412	0.1578	14	c.14 others(25): Show c.1498_*1499insCACAGGTGCCACGC	CSNK1E	ENSG00000213923.13	transcript	ENST00000396832.6	protein_coding		218		chr22	TogoVar
CSNK1G1_chr15_64160525_64361173	64182053	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0137 a0001c0001t0008g0137	1	176	0.0057	14	c.110 others(33): Show c.1108-1613_1108-1600dupAAAAAAAAAAAAAA	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	10/11			chr15	TogoVar
CSNK1G1_chr15_64160525_64361173	64229902	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01978.hp1 HG02109.hp2 others(6): Show HG01257.hp1 HG01978.hp1 HG02109.hp2 HG02280.hp1 HG02717.hp2 HG03239.hp1 HG03654.hp2 NA18962.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0006 a0001c0001t0014 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0014 a0001c0002t0001 a0001c0003t0002	a0001c0001t0001g0009 a0001c0001t0001g0039 a0001c0001t0006g0161 others(6): Show a0001c0001t0001g0009 a0001c0001t0001g0039 a0001c0001t0006g0161 a0001c0001t0014g0007 a0001c0002t0001g0030 a0001c0002t0001g0033 a0001c0002t0001g0042 a0001c0002t0001g0101 a0001c0003t0002g0084	9	176	0.0511	14	c.293 others(33): Show c.293-13203_293-13190dupAAAAAAAAAAAAAA	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	4/11			chr15	TogoVar
CSNK1G1_chr15_64160525_64361173	64343208	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0120 a0001c0001t0010g0120	1	176	0.0057	14	c.-22 others(35): Show c.-225+12766_-225+12779dupGTGTGTGTGTGTGT	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	1/11			chr15	TogoVar
CSNK1G1_chr15_64160525_64361173	64343235	A A	ACACACAC others(7): Show ACACACACACACACC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0119 a0001c0001t0012g0119	1	176	0.0057	14	c.-22 others(35): Show c.-225+12752_-225+12753insGGTGTGTGTGTGTG	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	1/11			chr15	TogoVar
CSNK1G2_chr19_1936172_1986338	1939438	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0019	1	382	0.0026	14	c.-22 others(25): Show c.-2246_-2245insTTTTTTTTTTTTTT	CSNK1G2	ENSG00000133275.16	transcript	ENST00000255641.13	protein_coding		1733		chr19	TogoVar
CSNK1G2_chr19_1936172_1986338	1968141	C C	CCTCCCTC others(7): Show CCTCCCTCCTCCCTT	intron_variant intron_variant	MODIFIER	HG02735.hp1 NA19030.hp2 HG02735.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0027 a0001c0001t0022 a0001c0001t0027	a0001c0001t0022g0180 a0001c0001t0027g0372 a0001c0001t0022g0180 a0001c0001t0027g0372	2	382	0.0052	14	c.-26 others(33): Show c.-265-1362_-265-1361insTCCTCCCTTCTCCC	CSNK1G2	ENSG00000133275.16	transcript	ENST00000255641.13	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr19	TogoVar
CSNK1G2_chr19_1936172_1986338	1968250	C C	CTCCATCC others(7): Show CTCCATCCTCCCTCT	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19083.hp2 NA19068.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0074 a0001c0001t0001g0076	2	382	0.0052	14	c.-26 others(33): Show c.-265-1255_-265-1254insATCCTCCCTCTTCC	CSNK1G2	ENSG00000133275.16	transcript	ENST00000255641.13	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr19	TogoVar
CSNK1G3_chr5_123507177_123622049	123542849	A A	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02280.hp2 NA21309.hp1 HG02280.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0009 a0001c0001t0002 a0001c0001t0009	a0001c0001t0002g0130 a0001c0001t0009g0143 a0001c0001t0002g0130 a0001c0001t0009g0143	2	294	0.0068	14	c.-24 others(33): Show c.-247-2543_-247-2530dupGTGTGTGTGTGTGT	CSNK1G3	ENSG00000151292.19	transcript	ENST00000696905.1	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
CSNK2A1_chr20_467498_548790	484692	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0308 a0001c0001t0036g0308	1	316	0.0032	14	c.106 others(31): Show c.1061-617_1061-616insCACACACACACACA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485097	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0299 a0001c0001t0057g0299	1	316	0.0032	14	c.106 others(33): Show c.1061-1022_1061-1021insATATATATATATAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485099	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0192 a0001c0001t0002g0192	1	316	0.0032	14	c.106 others(33): Show c.1061-1024_1061-1023insATATATATATATAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485101	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0218 a0001c0001t0001g0218	1	316	0.0032	14	c.106 others(33): Show c.1061-1026_1061-1025insATATATATATATAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485105	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0167 a0001c0001t0003g0167	1	316	0.0032	14	c.106 others(33): Show c.1061-1030_1061-1029insATATATATATATAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485109	A A	AAAAAAAA others(7): Show AAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0028 a0001c0001t0022g0028	1	316	0.0032	14	c.106 others(33): Show c.1061-1034_1061-1033insATATTTTTTTTTTT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485112	A A	AATAATAA others(7): Show AATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02451.hp1 HG03516.hp1 HG02109.hp1 HG02451.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0007 a0001c0001t0019g0019 a0001c0001t0019g0026 a0001c0001t0019g0007 a0001c0001t0019g0019 a0001c0001t0019g0026	3	316	0.0095	14	c.106 others(33): Show c.1061-1037_1061-1036insATTATTATTATTAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	527001	C C	CAGACAGA others(7): Show CAGACAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02572.hp2 NA18994.hp2 HG02572.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0062 a0001c0001t0006 a0001c0001t0062	a0001c0001t0006g0091 a0001c0001t0062g0130 a0001c0001t0006g0091 a0001c0001t0062g0130	2	316	0.0063	14	c.-11 others(31): Show c.-110+931_-110+932insCTCTCTCTCTGTCT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	2/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	527001	C C	CAGAGAGA others(7): Show CAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03688.hp1 HG03704.hp1 HG02976.hp2 HG03688.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0087 a0001c0001t0010 a0001c0001t0087	a0001c0001t0010g0304 a0001c0001t0010g0306 a0001c0001t0087g0099 a0001c0001t0010g0304 a0001c0001t0010g0306 a0001c0001t0087g0099	3	316	0.0095	14	c.-11 others(31): Show c.-110+918_-110+931dupCTCTCTCTCTCTCT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	2/13			chr20	TogoVar
CSNK2A2_chr16_58152907_58203106	58161546	C C	CACACACA others(7): Show CACACACACACACAG	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0263 a0001c0001t0001g0263	1	400	0.0025	14	c.17 others(31): Show c.17+2507_*17+2508insCTGTGTGTGTGTGT	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	11/11			chr16	TogoVar
CSNK2A2_chr16_58152907_58203106	58171958	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02922.hp2 NA18980.hp1 NA19058.hp1 others(1): Show HG02922.hp2 NA18980.hp1 NA19058.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0217 a0001c0001t0001g0254 a0001c0001t0002g0320 others(1): Show a0001c0001t0001g0217 a0001c0001t0001g0254 a0001c0001t0002g0320 a0001c0001t0002g0322	4	400	0.0100	14	c.429 others(31): Show c.429+2479_429+2492dupATATATATATATAT	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	5/11			chr16	TogoVar
CSNK2A2_chr16_58152907_58203106	58171979	A A	ATATATAT others(7): Show ATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0312 a0001c0001t0002g0312	1	400	0.0025	14	c.429 others(31): Show c.429+2471_429+2472insAATATATATATATA	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	5/11			chr16	TogoVar
CSNK2A2_chr16_58152907_58203106	58171979	A A	ATATATAT others(7): Show ATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0311 a0001c0001t0002g0311	1	400	0.0025	14	c.429 others(31): Show c.429+2471_429+2472insAAAAAATATATATA	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	5/11			chr16	TogoVar
CSNKA2IP_chr3_88333456_88472594	88418461	T T	TGTGTGTG others(7): Show TGTGTGTGTGCGCGC	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0142	1	386	0.0026	14	c.-27 others(35): Show c.-270-46624_-270-46623insTGTGTGCGCGCGTG	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88418463	T T	TGTGTGCG others(7): Show TGTGTGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG03942.hp1 HG04184.hp1 others(1): Show HG02056.hp1 HG03942.hp1 HG04184.hp1 NA19075.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0003c0003t0002 a0001c0001t0001 a0001c0001t0002 a0003c0003t0002	a0001c0001t0001g0130 a0001c0001t0001g0156 a0001c0001t0002g0289 others(1): Show a0001c0001t0001g0130 a0001c0001t0001g0156 a0001c0001t0002g0289 a0003c0003t0002g0315	4	386	0.0104	14	c.-27 others(35): Show c.-270-46624_-270-46623insTGTGCGCGCGCGCG	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88418463	T T	TGTGTGTG others(7): Show TGTGTGTGCGCGCGC	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00558.hp2 HG01070.hp1 others(52): Show HG00280.hp2 HG00558.hp2 HG01070.hp1 HG01071.hp2 HG01192.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp2 HG01515.hp1 HG01516.hp2 HG01943.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02486.hp2 HG02896.hp1 HG03471.hp1 HG03704.hp1 HG04228.hp2 NA18612.hp2 NA18747.hp1 NA18939.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18949.hp1 NA18949.hp2 NA18952.hp1 NA18954.hp1 NA18955.hp2 NA18957.hp2 NA18959.hp1 NA18969.hp2 NA18973.hp2 NA18977.hp1 NA18983.hp2 NA18984.hp1 NA19004.hp2 NA19005.hp1 NA19007.hp2 NA19012.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19070.hp2 NA19079.hp1 NA19082.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0006 a0010 a0012	a0001c0001 a0001c0012 a0002c0002 others(5): Show a0001c0001 a0001c0012 a0002c0002 a0003c0003 a0004c0005 a0006c0008 a0010c0014 a0012c0025	a0001c0001t0001 a0001c0001t0002 a0001c0012t0001 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0012t0001 a0002c0002t0001 a0002c0002t0002 a0003c0003t0001 a0004c0005t0001 a0006c0008t0001 a0010c0014t0001 a0012c0025t0001	a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 others(52): Show a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0167 a0001c0001t0001g0170 a0001c0001t0001g0175 a0001c0001t0001g0180 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0250 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0002g0290 a0001c0001t0002g0330 a0001c0012t0001g0038 a0002c0002t0001g0040 a0002c0002t0001g0042 a0002c0002t0001g0129 a0002c0002t0002g0273 a0003c0003t0001g0108 a0004c0005t0001g0111 a0006c0008t0001g0243 a0006c0008t0001g0244 a0010c0014t0001g0121 a0010c0014t0001g0122 a0012c0025t0001g0184	55	386	0.1425	14	c.-27 others(35): Show c.-270-46624_-270-46623insTGTGTGCGCGCGCG	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88418463	T T	TGTGTGTG others(7): Show TGTGTGTGTGCGCGC	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0374 a0001c0001t0002g0374	1	386	0.0026	14	c.-27 others(35): Show c.-270-46624_-270-46623insTGTGTGTGCGCGCG	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88449820	G G	GACACACA others(7): Show GACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02129.hp2 HG02895.hp2 others(5): Show HG00597.hp1 HG02129.hp2 HG02895.hp2 HG03710.hp1 HG04199.hp1 NA19058.hp1 NA19074.hp2 NA19084.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0015	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0015c0026	a0001c0001t0001 a0001c0001t0002 a0002c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0002 a0003c0003t0001 a0015c0026t0001	a0001c0001t0001g0137 a0001c0001t0002g0267 a0002c0002t0002g0313 others(5): Show a0001c0001t0001g0137 a0001c0001t0002g0267 a0002c0002t0002g0313 a0003c0003t0001g0052 a0003c0003t0001g0059 a0003c0003t0001g0078 a0003c0003t0001g0116 a0015c0026t0001g0069	8	386	0.0207	14	c.-27 others(35): Show c.-270-15246_-270-15233dupCACACACACACACA	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88449868	T T	TAGAGAGA others(7): Show TAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0176 a0002c0006t0001g0176	1	386	0.0026	14	c.-27 others(35): Show c.-270-15219_-270-15218insGAGAGAGAGAGAGA	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88449872	T T	TAGAGAGA others(7): Show TAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0128 a0002c0006t0001g0128	1	386	0.0026	14	c.-27 others(35): Show c.-270-15215_-270-15214insGAGAGAGAGAGAGA	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88449874	T T	TAGAGAGA others(7): Show TAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0133 a0002c0006t0001g0133	1	386	0.0026	14	c.-27 others(35): Show c.-270-15207_-270-15194dupAGAGAGAGAGAGAG	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSPP1_chr8_67059392_67201614	67083531	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG03017.hp2 HG03669.hp1 others(9): Show HG02738.hp2 HG03017.hp2 HG03669.hp1 HG03688.hp1 HG04199.hp1 NA18946.hp2 NA18952.hp2 NA18957.hp1 NA18961.hp1 NA18988.hp2 NA18998.hp1 NA19012.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0013 a0003c0003t0001g0014 a0003c0003t0001g0015 others(9): Show a0003c0003t0001g0013 a0003c0003t0001g0014 a0003c0003t0001g0015 a0003c0003t0001g0016 a0003c0003t0001g0017 a0003c0003t0001g0018 a0003c0003t0001g0019 a0003c0003t0001g0020 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0109	12	158	0.0760	14	c.200 others(31): Show c.200-2471_200-2458dupAAAAAAAAAAAAAA	CSPP1	ENSG00000104218.16	transcript	ENST00000678616.1	protein_coding	3/30		INFO_REALIGN_3_PRIME	chr8	TogoVar
CSPP1_chr8_67059392_67201614	67104949	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG03453.hp2 HG01978.hp1 HG03453.hp2	a0002 a0004 a0002 a0004	a0002c0002 a0004c0005 a0002c0002 a0004c0005	a0002c0002t0002 a0004c0005t0004 a0002c0002t0002 a0004c0005t0004	a0002c0002t0002g0117 a0004c0005t0004g0142 a0002c0002t0002g0117 a0004c0005t0004g0142	2	158	0.0127	14	c.102 others(31): Show c.1023-951_1023-938dupATATATATATATAT	CSPP1	ENSG00000104218.16	transcript	ENST00000678616.1	protein_coding	8/30		INFO_REALIGN_3_PRIME	chr8	TogoVar
CSRNP3_chr2_165464698_165694407	165466966	C C	CATATATA others(7): Show CATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00673.hp1 HG00408.hp1 HG00673.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0086 a0001c0002t0001g0090 a0001c0002t0001g0086 a0001c0002t0001g0090	2	246	0.0081	14	c.-30 others(25): Show c.-3057_-3056insATATATATATATAT	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding		2731		chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165477504	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0098 a0002c0003t0098	a0002c0003t0098g0099 a0002c0003t0098g0099	1	246	0.0041	14	c.-28 others(33): Show c.-283+7767_-283+7780dupATATATATATATAT	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165520783	T T	TTATATAC others(7): Show TTATATACATATATA	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0186 a0001c0001t0029g0186	1	246	0.0041	14	c.-24 others(31): Show c.-24+2828_-24+2829insCATATATATATATA	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165599283	G G	GAAAGAAA others(7): Show GAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp2 HG03579.hp1 others(1): Show HG02895.hp2 HG02897.hp2 HG03579.hp1 NA19054.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0003 a0001c0001t0067 a0001c0001t0078 others(1): Show a0001c0001t0003 a0001c0001t0067 a0001c0001t0078 a0002c0003t0010	a0001c0001t0003g0217 a0001c0001t0067g0216 a0001c0001t0078g0206 others(1): Show a0001c0001t0003g0217 a0001c0001t0067g0216 a0001c0001t0078g0206 a0002c0003t0010g0092	4	246	0.0163	14	c.148 others(31): Show c.148+4071_148+4072insAAGAAAGAAAGAAA	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165599283	G G	GAGAGAAA others(7): Show GAGAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0088 a0001c0004t0088	a0001c0004t0088g0087 a0001c0004t0088g0087	1	246	0.0041	14	c.148 others(31): Show c.148+4073_148+4074insGAAAGAAAGAAAGA	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar

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