Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CTNNA2_chr2_79508051_80653780	79793888	G G	GCACACAC others(7): Show GCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02809.hp2 HG02257.hp1 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0004t0001 a0001c0002t0001 a0001c0004t0001	a0001c0002t0001g0022 a0001c0004t0001g0021 a0001c0002t0001g0022 a0001c0004t0001g0021	2	68	0.0294	14	c.298 others(33): Show c.298+49325_298+49338dupCACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79814608	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0006 a0001c0004t0001g0006	1	68	0.0147	14	c.299 others(33): Show c.299-43387_299-43374dupCACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79818821	T T	TTATATAT others(7): Show TTATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02647.hp2 HG02965.hp1 others(1): Show HG02630.hp1 HG02647.hp2 HG02965.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0013 a0001c0001 a0001c0003 a0001c0013	a0001c0001t0001 a0001c0003t0001 a0001c0013t0001 a0001c0001t0001 a0001c0003t0001 a0001c0013t0001	a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0003t0001g0038 others(1): Show a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0003t0001g0038 a0001c0013t0001g0062	4	68	0.0588	14	c.299 others(33): Show c.299-39178_299-39165dupATATATATATATAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79818821	T T	TTTTATAT others(7): Show TTTTATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA18995.hp2 HG02630.hp2 NA18995.hp2	a0001 a0001	a0001c0012 a0001c0014 a0001c0012 a0001c0014	a0001c0012t0002 a0001c0014t0001 a0001c0012t0002 a0001c0014t0001	a0001c0012t0002g0019 a0001c0014t0001g0016 a0001c0012t0002g0019 a0001c0014t0001g0016	2	68	0.0294	14	c.299 others(33): Show c.299-39191_299-39190insTTATATATATATAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79818895	G G	GCACACAC others(7): Show GCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	68	0.0147	14	c.299 others(33): Show c.299-39105_299-39092dupCACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829360	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG03098.hp1 HG02257.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0005 a0001c0001t0001 a0001c0003t0005	a0001c0001t0001g0055 a0001c0003t0005g0017 a0001c0001t0001g0055 a0001c0003t0005g0017	2	68	0.0294	14	c.299 others(33): Show c.299-28611_299-28598dupCACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79844979	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG03209.hp2 HG00735.hp1 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0001 a0001c0002t0001 a0001c0003t0001	a0001c0002t0001g0049 a0001c0003t0001g0005 a0001c0002t0001g0049 a0001c0003t0001g0005	2	68	0.0294	14	c.299 others(33): Show c.299-13024_299-13011dupCACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79956843	G G	GTTTTTTT others(7): Show GTTTTTTTTTTCTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	68	0.0147	14	c.105 others(35): Show c.1056+47056_1056+47057insCTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80116902	A A	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp2 HG03516.hp1 others(1): Show HG02258.hp1 HG02630.hp2 HG03516.hp1 NA18906.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0014 a0001c0002 a0001c0003 a0001c0014	a0001c0002t0001 a0001c0003t0001 a0001c0014t0001 a0001c0002t0001 a0001c0003t0001 a0001c0014t0001	a0001c0002t0001g0034 a0001c0003t0001g0013 a0001c0003t0001g0026 others(1): Show a0001c0002t0001g0034 a0001c0003t0001g0013 a0001c0003t0001g0026 a0001c0014t0001g0016	4	68	0.0588	14	c.105 others(37): Show c.1056+207126_1056+207139dupGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80117455	A A	AGTGTGTG others(7): Show AGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02257.hp2 HG02809.hp2 others(1): Show HG02109.hp1 HG02257.hp2 HG02809.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 others(1): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 a0001c0004t0001	a0001c0001t0001g0055 a0001c0002t0002g0025 a0001c0002t0003g0036 others(1): Show a0001c0001t0001g0055 a0001c0002t0002g0025 a0001c0002t0003g0036 a0001c0004t0001g0021	4	68	0.0588	14	c.105 others(37): Show c.1056+207677_1056+207690dupGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80149774	T T	TCTCACAC others(7): Show TCTCACACACACACA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03453.hp2 HG02257.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0039 a0001c0002t0001g0022 a0001c0001t0001g0039 a0001c0002t0001g0022	2	68	0.0294	14	c.105 others(37): Show c.1056+239978_1056+239979insTCACACACACACAC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80279049	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02622.hp2 HG03041.hp1 HG02148.hp2 HG02622.hp2 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 a0001c0001 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0004t0002 a0001c0005t0002 a0001c0001t0001 a0001c0004t0002 a0001c0005t0002	a0001c0001t0001g0031 a0001c0004t0002g0048 a0001c0005t0002g0063 a0001c0001t0001g0031 a0001c0004t0002g0048 a0001c0005t0002g0063	3	68	0.0441	14	c.105 others(37): Show c.1057-114138_1057-114125dupTGTGTGTGTGTGTG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80306400	T T	TTTTCTTT others(7): Show TTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0015 a0001c0002t0002g0015	1	68	0.0147	14	c.105 others(35): Show c.1057-86804_1057-86803insTCTTTTCTTTCTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80422870	G G	GTGTGGGG others(7): Show GTGTGGGGATTTATT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01884.hp1 HG02257.hp2 others(21): Show HG00735.hp1 HG01884.hp1 HG02257.hp2 HG02258.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02970.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 NA18906.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0001c0009 a0001c0011 a0002c0006 a0002c0008 a0003c0015	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(8): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0007t0001 a0001c0009t0001 a0001c0011t0001 a0002c0006t0001 a0002c0008t0001 a0003c0015t0001	a0001c0001t0001g0012 a0001c0001t0001g0028 a0001c0001t0001g0030 others(21): Show a0001c0001t0001g0012 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0033 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0001g0067 a0001c0002t0001g0007 a0001c0002t0001g0023 a0001c0002t0001g0049 a0001c0003t0001g0026 a0001c0004t0001g0006 a0001c0004t0001g0021 a0001c0004t0001g0032 a0001c0004t0002g0048 a0001c0007t0001g0068 a0001c0009t0001g0003 a0001c0011t0001g0051 a0002c0006t0001g0020 a0002c0006t0001g0040 a0002c0006t0001g0060 a0002c0008t0001g0002 a0003c0015t0001g0014	24	68	0.3529	14	c.129 others(33): Show c.1290+3274_1290+3275insGGATTTATTTGTGG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	9/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80569633	G G	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0065 a0001c0002t0002g0065	1	68	0.0147	14	c.174 others(33): Show c.1742-4516_1742-4503dupTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	12/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80601417	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp2 NA18906.hp1 NA18906.hp2	a0001 a0001	a0001c0003 a0001c0011 a0001c0003 a0001c0011	a0001c0003t0001 a0001c0011t0001 a0001c0003t0001 a0001c0011t0001	a0001c0003t0001g0013 a0001c0011t0001g0051 a0001c0003t0001g0013 a0001c0011t0001g0051	2	68	0.0294	14	c.219 others(33): Show c.2190-2654_2190-2653insTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	15/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80639513	A A	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG00673.hp1 others(6): Show HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG02622.hp2 HG02809.hp1 HG02970.hp2 HG03688.hp1 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0012	a0001c0001t0002 a0001c0002t0002 a0001c0003t0002 others(3): Show a0001c0001t0002 a0001c0002t0002 a0001c0003t0002 a0001c0004t0002 a0001c0005t0002 a0001c0012t0002	a0001c0001t0002g0029 a0001c0001t0002g0066 a0001c0002t0002g0065 others(6): Show a0001c0001t0002g0029 a0001c0001t0002g0066 a0001c0002t0002g0065 a0001c0003t0002g0008 a0001c0003t0002g0044 a0001c0004t0002g0048 a0001c0005t0002g0009 a0001c0005t0002g0043 a0001c0012t0002g0019	9	68	0.1324	14	c.257 others(33): Show c.2575-8058_2575-8045dupGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	18/18	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA3_chr10_65907523_67701195	66018187	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02818.hp1 HG02896.hp1 others(5): Show HG02280.hp2 HG02818.hp1 HG02896.hp1 HG02922.hp2 NA18612.hp1 NA18960.hp2 NA18964.hp1 NA19080.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0011 a0002c0002 a0001c0001 a0001c0011 a0002c0002	a0001c0001t0003 a0001c0001t0005 a0001c0001t0016 others(5): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0016 a0001c0001t0020 a0001c0011t0009 a0002c0002t0002 a0002c0002t0003 a0002c0002t0017	a0001c0001t0003g0023 a0001c0001t0005g0010 a0001c0001t0016g0003 others(5): Show a0001c0001t0003g0023 a0001c0001t0005g0010 a0001c0001t0016g0003 a0001c0001t0020g0030 a0001c0011t0009g0017 a0002c0002t0002g0013 a0002c0002t0003g0042 a0002c0002t0017g0040	8	46	0.1739	14	c.216 others(35): Show c.2160-29404_2160-29391dupGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66021852	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0022 a0001c0003t0022	a0001c0003t0022g0022 a0001c0003t0022g0022	1	46	0.0217	14	c.216 others(35): Show c.2160-33069_2160-33056dupAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66024085	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0031 a0001c0001t0009g0031	1	46	0.0217	14	c.216 others(35): Show c.2160-35302_2160-35289dupAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66153848	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0018 a0001c0004t0001g0018	1	46	0.0217	14	c.188 others(35): Show c.1885-50613_1885-50600dupGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66154719	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0046 a0002c0002t0026g0046	1	46	0.0217	14	c.188 others(35): Show c.1885-51484_1885-51471dupATATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66189617	T T	TATATATA others(7): Show TATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03195.hp1 HG06807.hp1 HG02145.hp2 HG03195.hp1 HG06807.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0007 a0003c0009 a0004c0008 a0001c0007 a0003c0009 a0004c0008	a0001c0007t0015 a0003c0009t0003 a0004c0008t0005 a0001c0007t0015 a0003c0009t0003 a0004c0008t0005	a0001c0007t0015g0016 a0003c0009t0003g0036 a0004c0008t0005g0033 a0001c0007t0015g0016 a0003c0009t0003g0036 a0004c0008t0005g0033	3	46	0.0652	14	c.188 others(35): Show c.1885-86369_1885-86368insGTGTATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66225390	A A	AATATATA others(7): Show AATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02922.hp1 HG03540.hp2 HG02647.hp2 HG02922.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0002 a0001c0003t0011 a0001c0004t0001 a0001c0001t0002 a0001c0003t0011 a0001c0004t0001	a0001c0001t0002g0009 a0001c0003t0011g0032 a0001c0004t0001g0018 a0001c0001t0002g0009 a0001c0003t0011g0032 a0001c0004t0001g0018	3	46	0.0652	14	c.188 others(35): Show c.1884+55066_1884+55079dupATATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66318276	A A	ATATGTGT others(7): Show ATATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0026 a0002c0002t0013g0026	1	46	0.0217	14	c.173 others(35): Show c.1733-37656_1733-37655insCACACACACACATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66328911	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG06807.hp2 HG01070.hp1 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0021 a0002c0002t0003 a0001c0001t0021 a0002c0002t0003	a0001c0001t0021g0012 a0002c0002t0003g0039 a0001c0001t0021g0012 a0002c0002t0003g0039	2	46	0.0435	14	c.173 others(35): Show c.1733-48304_1733-48291dupATATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66328933	T T	TATATATA others(7): Show TATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0009 a0001c0001t0002g0009	1	46	0.0217	14	c.173 others(35): Show c.1733-48313_1733-48312insGTGTATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66331338	G G	GCTTGCTT others(7): Show GCTTGCTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0038 a0001c0001t0012g0038	1	46	0.0217	14	c.173 others(35): Show c.1732+47813_1732+47814insAAAAAAAAAGCAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66418556	G G	GACACACA others(7): Show GACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	46	0.0217	14	c.153 others(35): Show c.1532-39218_1532-39205dupGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66479950	T T	TCACACAC others(7): Show TCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02717.hp1 HG02818.hp2 others(3): Show HG02280.hp2 HG02717.hp1 HG02818.hp2 HG02896.hp1 HG03130.hp1 HG06807.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0004 a0001c0011 others(1): Show a0001c0001 a0001c0004 a0001c0011 a0004c0008	a0001c0001t0001 a0001c0001t0006 a0001c0001t0016 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0016 a0001c0004t0007 a0001c0011t0009 a0004c0008t0005	a0001c0001t0001g0006 a0001c0001t0006g0027 a0001c0001t0016g0003 others(3): Show a0001c0001t0001g0006 a0001c0001t0006g0027 a0001c0001t0016g0003 a0001c0004t0007g0005 a0001c0011t0009g0017 a0004c0008t0005g0033	6	46	0.1304	14	c.153 others(35): Show c.1531+40653_1531+40666dupTGTGTGTGTGTGTG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66493599	A A	ATTTTTTT others(7): Show ATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0003 a0001c0001t0016g0003	1	46	0.0217	14	c.153 others(35): Show c.1531+27004_1531+27017dupAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66547343	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0012 a0001c0001t0021g0012	1	46	0.0217	14	c.137 others(35): Show c.1375-26571_1375-26570insAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	10/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66634572	G G	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02717.hp2 HG02647.hp2 HG02717.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0014 a0001c0003t0011 a0001c0003t0014	a0001c0003t0011g0032 a0001c0003t0014g0025 a0001c0003t0011g0032 a0001c0003t0014g0025	2	46	0.0435	14	c.128 others(35): Show c.1282-12802_1282-12789dupACACACACACACAC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	9/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66668422	A A	ATATGTGT others(7): Show ATATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0001 a0001c0006t0001g0001	1	46	0.0217	14	c.128 others(35): Show c.1282-46639_1282-46638insCACACACACACATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	9/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66682657	G G	GCTAAAAC others(7): Show GCTAAAACTTATTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp2 HG01081.hp2 others(27): Show HG01070.hp1 HG01070.hp2 HG01081.hp2 HG01243.hp2 HG02145.hp1 HG02145.hp2 HG02280.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02717.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03130.hp1 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG06807.hp1 NA18612.hp1 NA18960.hp1 NA18960.hp2 NA18964.hp1 NA19080.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0003 a0001c0005 others(7): Show a0001c0001 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0011 a0002c0002 a0003c0009 a0004c0008 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(25): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0021 a0001c0001t0024 a0001c0003t0008 a0001c0003t0014 a0001c0003t0018 a0001c0003t0022 a0001c0005t0010 a0001c0006t0001 a0001c0007t0015 a0001c0011t0009 a0002c0002t0003 a0002c0002t0004 a0002c0002t0005 a0002c0002t0013 a0002c0002t0017 a0002c0002t0026 a0003c0009t0003 a0004c0008t0005 a0005c0010t0002	a0001c0001t0001g0006 a0001c0001t0001g0015 a0001c0001t0002g0009 others(27): Show a0001c0001t0001g0006 a0001c0001t0001g0015 a0001c0001t0002g0009 a0001c0001t0002g0024 a0001c0001t0003g0023 a0001c0001t0004g0041 a0001c0001t0005g0010 a0001c0001t0007g0020 a0001c0001t0008g0004 a0001c0001t0009g0031 a0001c0001t0012g0038 a0001c0001t0021g0012 a0001c0001t0024g0044 a0001c0003t0008g0002 a0001c0003t0014g0025 a0001c0003t0018g0037 a0001c0003t0022g0022 a0001c0005t0010g0029 a0001c0006t0001g0001 a0001c0007t0015g0016 a0001c0011t0009g0017 a0002c0002t0003g0042 a0002c0002t0004g0028 a0002c0002t0005g0014 a0002c0002t0013g0026 a0002c0002t0017g0040 a0002c0002t0026g0046 a0003c0009t0003g0036 a0004c0008t0005g0033 a0005c0010t0002g0021	30	46	0.6522	14	c.128 others(35): Show c.1282-60874_1282-60873insAAAATAAGTTTTAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	9/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66763341	C C	CAGAGAGA others(7): Show CAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02647.hp1 HG03195.hp1 HG01081.hp1 HG02647.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0007 a0001c0001 a0001c0006 a0001c0007	a0001c0001t0023 a0001c0006t0001 a0001c0007t0015 a0001c0001t0023 a0001c0006t0001 a0001c0007t0015	a0001c0001t0023g0011 a0001c0006t0001g0001 a0001c0007t0015g0016 a0001c0001t0023g0011 a0001c0006t0001g0001 a0001c0007t0015g0016	3	46	0.0652	14	c.128 others(33): Show c.1281+2922_1281+2923insCTCTCTCTCTCTCT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	9/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66996649	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02922.hp1 HG02896.hp1 HG02922.hp1	a0001 a0001	a0001c0004 a0001c0011 a0001c0004 a0001c0011	a0001c0004t0001 a0001c0011t0009 a0001c0004t0001 a0001c0011t0009	a0001c0004t0001g0018 a0001c0011t0009g0017 a0001c0004t0001g0018 a0001c0011t0009g0017	2	46	0.0435	14	c.104 others(37): Show c.1047+183654_1047+183667dupTTTTTTTTTTTTTT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67005682	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp2 HG02922.hp1 others(4): Show HG01081.hp1 HG01081.hp2 HG02922.hp1 HG02965.hp1 HG03540.hp2 NA18960.hp1 NA19080.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0002c0002 a0005c0010	a0001c0001t0002 a0001c0001t0023 a0001c0001t0024 others(4): Show a0001c0001t0002 a0001c0001t0023 a0001c0001t0024 a0001c0003t0008 a0001c0004t0001 a0002c0002t0002 a0005c0010t0002	a0001c0001t0002g0009 a0001c0001t0023g0011 a0001c0001t0024g0044 others(4): Show a0001c0001t0002g0009 a0001c0001t0023g0011 a0001c0001t0024g0044 a0001c0003t0008g0002 a0001c0004t0001g0018 a0002c0002t0002g0013 a0005c0010t0002g0021	7	46	0.1522	14	c.104 others(37): Show c.1047+174621_1047+174634dupAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67005687	T T	TTTTTTTT others(7): Show TTTTTTTTTTGTTTG	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0006g0007 a0001c0001t0006g0008	2	46	0.0435	14	c.104 others(37): Show c.1047+174629_1047+174630insCAAACAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67005687	T T	TTTTTTTT others(7): Show TTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0046 a0002c0002t0026g0046	1	46	0.0217	14	c.104 others(37): Show c.1047+174629_1047+174630insCAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67075170	G G	GCACACAC others(7): Show GCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02717.hp2 HG02818.hp2 others(3): Show HG02145.hp1 HG02717.hp2 HG02818.hp2 HG02922.hp2 HG02965.hp1 HG03579.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0005c0010	a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 others(3): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0001c0003t0014 a0002c0002t0013 a0005c0010t0002	a0001c0001t0003g0023 a0001c0001t0006g0027 a0001c0001t0008g0004 others(3): Show a0001c0001t0003g0023 a0001c0001t0006g0027 a0001c0001t0008g0004 a0001c0003t0014g0025 a0002c0002t0013g0026 a0005c0010t0002g0021	6	46	0.1304	14	c.104 others(37): Show c.1047+105133_1047+105146dupTGTGTGTGTGTGTG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67114709	G G	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03195.hp1 HG02647.hp1 HG03195.hp1	a0001 a0001	a0001c0006 a0001c0007 a0001c0006 a0001c0007	a0001c0006t0001 a0001c0007t0015 a0001c0006t0001 a0001c0007t0015	a0001c0006t0001g0001 a0001c0007t0015g0016 a0001c0006t0001g0001 a0001c0007t0015g0016	2	46	0.0435	14	c.104 others(35): Show c.1047+65594_1047+65607dupACACACACACACAC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67133328	T T	TATATATA others(7): Show TATATATATTTATAC	intron_variant intron_variant	MODIFIER	HG02965.hp1 NA18964.hp1 HG02965.hp1 NA18964.hp1	a0002 a0005 a0002 a0005	a0002c0002 a0005c0010 a0002c0002 a0005c0010	a0002c0002t0003 a0005c0010t0002 a0002c0002t0003 a0005c0010t0002	a0002c0002t0003g0042 a0005c0010t0002g0021 a0002c0002t0003g0042 a0005c0010t0002g0021	2	46	0.0435	14	c.104 others(35): Show c.1047+46988_1047+46989insGTATAAATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67133366	C C	CATACATA others(7): Show CATACATATATATAT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01081.hp2 HG02896.hp1 HG01070.hp2 HG01081.hp2 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0011 a0001c0001 a0001c0003 a0001c0011	a0001c0001t0001 a0001c0003t0008 a0001c0011t0009 a0001c0001t0001 a0001c0003t0008 a0001c0011t0009	a0001c0001t0001g0015 a0001c0003t0008g0002 a0001c0011t0009g0017 a0001c0001t0001g0015 a0001c0003t0008g0002 a0001c0011t0009g0017	3	46	0.0652	14	c.104 others(35): Show c.1047+46950_1047+46951insATATATATATGTAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67296934	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03195.hp2 HG02818.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0020 a0001c0003t0018 a0001c0001t0020 a0001c0003t0018	a0001c0001t0020g0030 a0001c0003t0018g0037 a0001c0001t0020g0030 a0001c0003t0018g0037	2	46	0.0435	14	c.580 others(33): Show c.580-77078_580-77065dupTTTTTTTTTTTTTT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	5/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67430820	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02145.hp1 HG01081.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0023 a0001c0001t0008 a0001c0001t0023	a0001c0001t0008g0004 a0001c0001t0023g0011 a0001c0001t0008g0004 a0001c0001t0023g0011	2	46	0.0435	14	c.579 others(33): Show c.579+91008_579+91021dupGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	5/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67489805	T T	TATATATA others(7): Show TATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0018 a0001c0004t0001g0018	1	46	0.0217	14	c.579 others(33): Show c.579+32036_579+32037insGTATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	5/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67566039	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0002 a0001c0003t0008g0002	1	46	0.0217	14	c.293 others(33): Show c.293-26371_293-26370insTATATATATATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	3/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67566041	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02895.hp2 HG02896.hp2 others(1): Show HG02717.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 a0001c0001 a0001c0004 a0001c0005	a0001c0001t0006 a0001c0004t0007 a0001c0005t0010 a0001c0001t0006 a0001c0004t0007 a0001c0005t0010	a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0004t0007g0005 others(1): Show a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0004t0007g0005 a0001c0005t0010g0034	4	46	0.0870	14	c.293 others(33): Show c.293-26373_293-26372insTATATATATATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	3/17		chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67566043	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0015 a0001c0007t0015	a0001c0007t0015g0016 a0001c0007t0015g0016	1	46	0.0217	14	c.293 others(33): Show c.293-26388_293-26375dupTATATATATATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	3/17		chr10	TogoVar

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