JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARHGAP15_chr2_143124419_143773352	143673752	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	162	0.0062	14	c.113 others(35): Show c.1139-29666_1139-29665insATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673756	G G	GTATATAT others(7): Show GTATATATATATATA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	162	0.0062	14	c.113 others(35): Show c.1139-29662_1139-29661insATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143765109	A A	ATGTGTGT others(7): Show ATGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03195.hp2 HG02145.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0128 a0001c0001t0001g0091 a0001c0001t0001g0128	2	162	0.0124	14	c.124 others(33): Show c.1245-2855_1245-2842dupTGTGTGTGTGTGTG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP17_chr16_24914389_25020369	24916423	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	240	0.0042	14	c.37 others(25): Show c.3706_*3707insAAAAAAAAAAAAAA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		2965		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	24916596	T T	TACACACA others(7): Show TACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02809.hp2 HG02886.hp2 others(1): Show HG02280.hp1 HG02809.hp2 HG02886.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0096 a0001c0001t0001g0102 a0001c0001t0001g0107 others(1): Show a0001c0001t0001g0096 a0001c0001t0001g0102 a0001c0001t0001g0107 a0001c0001t0001g0109	4	240	0.0167	14	c.35 others(25): Show c.3533_*3534insGTGTGTGTGTGTGT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		2792		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	24950836	C C	CAAACAAA others(7): Show CAAACAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0108 a0001c0004t0002g0108	1	240	0.0042	14	c.104 others(33): Show c.1047-1353_1047-1352insTTTTTTTTTTGTTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	12/19			chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	24961911	T T	TTATATAT others(7): Show TTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG02280.hp1 HG02647.hp1 others(2): Show HG01516.hp1 HG02280.hp1 HG02647.hp1 HG02818.hp1 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0101 a0001c0001t0001g0109 a0001c0001t0001g0233 others(2): Show a0001c0001t0001g0101 a0001c0001t0001g0109 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0002t0001g0038	5	240	0.0208	14	c.574 others(31): Show c.574-1946_574-1933dupTATATATATATATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	7/19			chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	24983000	T T	TTATATAT others(7): Show TTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0083 a0001c0001t0001g0083	1	240	0.0042	14	c.54- others(29): Show c.54-3996_54-3995insTATATATATATATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	1/19			chr16	TogoVar
ARHGAP18_chr6_129571132_129715177	129602987	T T	TTATATAT others(7): Show TTATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03834.hp2 HG03098.hp2 HG03834.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0006 a0003c0004t0001 a0001c0001t0006 a0003c0004t0001	a0001c0001t0006g0060 a0003c0004t0001g0151 a0001c0001t0006g0060 a0003c0004t0001g0151	2	238	0.0084	14	c.136 others(33): Show c.1366-2153_1366-2140dupTATATATATATATA	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	10/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129626065	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0060 a0001c0001t0006g0060	1	238	0.0042	14	c.786 others(31): Show c.786+3274_786+3287dupGTGTGTGTGTGTGT	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	5/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129626073	C C	CACACACA others(7): Show CACACACACACACAT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0151 a0003c0004t0001g0151	1	238	0.0042	14	c.786 others(31): Show c.786+3279_786+3280insATGTGTGTGTGTGT	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	5/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129626105	C C	CACACACA others(7): Show CACACACACACATAT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG03516.hp1 NA18942.hp2 others(5): Show HG00738.hp1 HG03516.hp1 NA18942.hp2 NA18964.hp1 NA18971.hp1 NA18979.hp1 NA19005.hp2 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0102 a0001c0001t0001g0129 a0001c0001t0001g0155 others(5): Show a0001c0001t0001g0102 a0001c0001t0001g0129 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0166 a0001c0001t0001g0186 a0001c0001t0001g0194 a0002c0002t0001g0010	8	238	0.0336	14	c.786 others(31): Show c.786+3247_786+3248insATATGTGTGTGTGT	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	5/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129667503	G G	GTGTGTGT others(7): Show GTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00741.hp1 HG02523.hp2 others(4): Show HG00140.hp2 HG00741.hp1 HG02523.hp2 HG02896.hp2 NA18943.hp2 NA18983.hp2 NA19011.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0002c0002t0001	a0001c0001t0001g0094 a0001c0001t0001g0108 a0001c0001t0001g0216 others(4): Show a0001c0001t0001g0094 a0001c0001t0001g0108 a0001c0001t0001g0216 a0001c0001t0001g0218 a0001c0001t0002g0217 a0001c0001t0005g0212 a0002c0002t0001g0011	7	238	0.0294	14	c.114 others(33): Show c.114-25486_114-25485insTACACACACACACA	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	1/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129668362	T T	TCACACAC others(7): Show TCACACACACAAACA	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02273.hp2 NA18963.hp2 HG01261.hp2 HG02273.hp2 NA18963.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0002 a0001c0001t0002 a0002c0002t0002	a0001c0001t0002g0172 a0002c0002t0002g0019 a0002c0002t0002g0020 a0001c0001t0002g0172 a0002c0002t0002g0019 a0002c0002t0002g0020	3	238	0.0126	14	c.114 others(33): Show c.114-26345_114-26344insTGTTTGTGTGTGTG	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	1/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129668362	T T	TCACACAC others(7): Show TCACACACACACACA	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02451.hp1 NA20300.hp1 HG02280.hp2 HG02451.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0003c0004t0005 a0001c0001t0001 a0001c0001t0002 a0003c0004t0005	a0001c0001t0001g0144 a0001c0001t0002g0145 a0003c0004t0005g0088 a0001c0001t0001g0144 a0001c0001t0002g0145 a0003c0004t0005g0088	3	238	0.0126	14	c.114 others(33): Show c.114-26358_114-26345dupTGTGTGTGTGTGTG	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	1/14			chr6	TogoVar
ARHGAP18_chr6_129571132_129715177	129676915	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0138 a0001c0001t0003g0138	1	238	0.0042	14	c.113 others(33): Show c.113+33095_113+33108dupAAAAAAAAAAAAAA	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding	1/14			chr6	TogoVar
ARHGAP19_chr10_97217179_97297637	97218631	T T	TTGTGTGT others(7): Show TTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG00673.hp2 HG02015.hp1 others(11): Show HG00280.hp1 HG00673.hp2 HG02015.hp1 HG02135.hp2 NA18612.hp2 NA18943.hp2 NA18946.hp2 NA18948.hp1 NA18970.hp2 NA18978.hp1 NA18994.hp2 NA19000.hp2 NA19064.hp1 NA21309.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0003 a0001c0003t0002 a0001c0003t0003	a0001c0003t0002g0076 a0001c0003t0003g0077 a0001c0003t0003g0083 others(11): Show a0001c0003t0002g0076 a0001c0003t0003g0077 a0001c0003t0003g0083 a0001c0003t0003g0084 a0001c0003t0003g0085 a0001c0003t0003g0087 a0001c0003t0003g0088 a0001c0003t0003g0098 a0001c0003t0003g0099 a0001c0003t0003g0100 a0001c0003t0003g0103 a0001c0003t0003g0104 a0001c0003t0003g0105 a0001c0003t0003g0106	14	242	0.0579	14	c.74 others(25): Show c.7490_*7491insCACACACACACACA	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding		3547		chr10	TogoVar
ARHGAP19_chr10_97217179_97297637	97218631	T T	TTTTGTGT others(7): Show TTTTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0013 a0001c0001t0014g0013	1	242	0.0041	14	c.74 others(25): Show c.7490_*7491insCACACACACACAAA	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding		3547		chr10	TogoVar
ARHGAP20_chr11_110572043_110717437	110660062	A A	AAAAAAAA others(7): Show AAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01496.hp2 HG03688.hp1 HG00735.hp2 HG01496.hp2 HG03688.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0002 a0001c0001t0001 a0003c0004t0002	a0001c0001t0001g0027 a0001c0001t0001g0139 a0003c0004t0002g0144 a0001c0001t0001g0027 a0001c0001t0001g0139 a0003c0004t0002g0144	3	226	0.0133	14	c.189 others(33): Show c.189-29271_189-29270insGTTTTTTTTTTTTT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02145.hp2 HG02647.hp1 others(2): Show HG02109.hp1 HG02145.hp2 HG02647.hp1 HG02896.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006	a0001c0001t0002g0008 a0001c0001t0004g0009 a0001c0001t0004g0010 others(2): Show a0001c0001t0002g0008 a0001c0001t0004g0009 a0001c0001t0004g0010 a0001c0001t0004g0012 a0001c0001t0006g0199	5	226	0.0221	14	c.188 others(31): Show c.188+3498_188+3511dupATATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP20_chr11_110572043_110717437	110687055	T T	TATATATA others(7): Show TATATATATATATAG	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0012 a0012	a0012c0019 a0012c0019	a0012c0019t0004 a0012c0019t0004	a0012c0019t0004g0151 a0012c0019t0004g0151	1	226	0.0044	14	c.188 others(31): Show c.188+3491_188+3492insCTATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP21_chr10_24578614_24728887	24593258	A A	AGAAAGAA others(7): Show AGAAAGAAACTATGT	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0271 a0001c0001t0001g0271	1	352	0.0028	14	c.387 others(33): Show c.3877-1260_3877-1247dupACATAGTTTCTTTC	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	21/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24625062	G G	GGGGGGGG others(7): Show GGGGGGGGGGGGAGA	intron_variant intron_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0231 a0003c0003t0001g0231	1	352	0.0028	14	c.496 others(31): Show c.496-2301_496-2300insTCTCCCCCCCCCCC	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24625062	G G	GGGGGGGG others(7): Show GGGGGGGGGGGGGGA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00597.hp2 HG02055.hp1 others(10): Show HG00423.hp1 HG00597.hp2 HG02055.hp1 HG02083.hp2 HG02129.hp1 HG02717.hp2 HG03225.hp1 HG04228.hp2 NA18947.hp1 NA18978.hp1 NA19005.hp1 NA19007.hp2 NA19064.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0003 a0005c0005 a0001c0001 a0003c0003 a0005c0005	a0001c0001t0001 a0001c0001t0003 a0003c0003t0001 others(1): Show a0001c0001t0001 a0001c0001t0003 a0003c0003t0001 a0005c0005t0001	a0001c0001t0001g0199 a0001c0001t0001g0222 a0001c0001t0001g0224 others(10): Show a0001c0001t0001g0199 a0001c0001t0001g0222 a0001c0001t0001g0224 a0001c0001t0003g0216 a0003c0003t0001g0116 a0003c0003t0001g0198 a0003c0003t0001g0207 a0003c0003t0001g0209 a0003c0003t0001g0210 a0003c0003t0001g0218 a0003c0003t0001g0230 a0003c0003t0001g0236 a0005c0005t0001g0104	13	352	0.0369	14	c.496 others(31): Show c.496-2301_496-2300insTCCCCCCCCCCCCC	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628916	C C	CATATATA others(7): Show CATATATACATATAT	intron_variant intron_variant	MODIFIER	HG02129.hp2 NA18747.hp1 NA18989.hp1 others(2): Show HG02129.hp2 NA18747.hp1 NA18989.hp1 NA19011.hp2 NA19056.hp2	a0007 a0017 a0022 a0007 a0017 a0022	a0007c0007 a0017c0029 a0022c0028 a0007c0007 a0017c0029 a0022c0028	a0007c0007t0006 a0007c0007t0015 a0017c0029t0006 others(1): Show a0007c0007t0006 a0007c0007t0015 a0017c0029t0006 a0022c0028t0006	a0007c0007t0006g0291 a0007c0007t0006g0292 a0007c0007t0015g0288 others(2): Show a0007c0007t0006g0291 a0007c0007t0006g0292 a0007c0007t0015g0288 a0017c0029t0006g0290 a0022c0028t0006g0289	5	352	0.0142	14	c.495 others(31): Show c.495+1079_495+1080insATATATGTATATAT	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628952	C C	CTATATAT others(7): Show CTATATATATATATA	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp2 NA18975.hp2 HG03195.hp1 HG03195.hp2 NA18975.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0002c0002 a0012c0010 a0001c0001 a0002c0002 a0012c0010	a0001c0001t0001 a0002c0002t0001 a0012c0010t0001 a0001c0001t0001 a0002c0002t0001 a0012c0010t0001	a0001c0001t0001g0193 a0002c0002t0001g0046 a0012c0010t0001g0266 a0001c0001t0001g0193 a0002c0002t0001g0046 a0012c0010t0001g0266	3	352	0.0085	14	c.495 others(31): Show c.495+1030_495+1043dupTATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(7): Show ATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18986.hp1 HG00423.hp2 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0273 a0001c0001t0001g0274	2	352	0.0057	14	c.495 others(31): Show c.495+1013_495+1014insAATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(7): Show ATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02148.hp1 HG03239.hp1 HG00735.hp1 HG02148.hp1 HG03239.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0109 a0002c0002t0001g0126 a0002c0002t0001g0153 a0002c0002t0001g0109 a0002c0002t0001g0126 a0002c0002t0001g0153	3	352	0.0085	14	c.495 others(31): Show c.495+1013_495+1014insAAAATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(7): Show ATATATATATTTTTT	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1	a0003 a0014 a0003 a0014	a0003c0003 a0014c0024 a0003c0003 a0014c0024	a0003c0003t0001 a0003c0003t0012 a0014c0024t0011 a0003c0003t0001 a0003c0003t0012 a0014c0024t0011	a0003c0003t0001g0173 a0003c0003t0012g0172 a0014c0024t0011g0033 a0003c0003t0001g0173 a0003c0003t0012g0172 a0014c0024t0011g0033	3	352	0.0085	14	c.495 others(31): Show c.495+1013_495+1014insAAAAAATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(7): Show ATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00609.hp1 HG00741.hp2 HG00280.hp1 HG00609.hp1 HG00741.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0007 a0003c0003t0001 a0001c0001t0001 a0002c0002t0007 a0003c0003t0001	a0001c0001t0001g0189 a0002c0002t0007g0008 a0003c0003t0001g0179 a0001c0001t0001g0189 a0002c0002t0007g0008 a0003c0003t0001g0179	3	352	0.0085	14	c.495 others(31): Show c.495+1013_495+1014insAAAAAAAATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24719098	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02572.hp2 HG02717.hp1 others(3): Show HG02559.hp1 HG02572.hp2 HG02717.hp1 HG03130.hp2 HG03540.hp1 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0001 a0005c0005t0001 a0001c0001t0001 a0005c0005t0001	a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 others(3): Show a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0005c0005t0001g0167	6	352	0.0171	14	c.63+ others(29): Show c.63+2725_63+2738dupGTGTGTGTGTGTGT	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	2/25			chr10	TogoVar
ARHGAP23_chr17_38423464_38517385	38426550	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02451.hp2 HG02622.hp1 HG02109.hp1 HG02451.hp2 HG02622.hp1	a0001 a0008 a0001 a0008	a0001c0004 a0001c0010 a0008c0050 a0001c0004 a0001c0010 a0008c0050	a0001c0004t0001 a0001c0010t0001 a0008c0050t0003 a0001c0004t0001 a0001c0010t0001 a0008c0050t0003	a0001c0004t0001g0162 a0001c0010t0001g0161 a0008c0050t0003g0136 a0001c0004t0001g0162 a0001c0010t0001g0161 a0008c0050t0003g0136	3	309	0.0097	14	c.-19 others(25): Show c.-1936_-1935insAAAAAAAAAAAAAA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		1913		chr17	TogoVar
ARHGAP23_chr17_38423464_38517385	38447437	G G	GAAAAAAA others(7): Show GAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02109.hp1 HG02132.hp1 others(1): Show HG01081.hp2 HG02109.hp1 HG02132.hp1 HG03927.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0001c0002 a0001c0048 others(1): Show a0001c0001 a0001c0002 a0001c0048 a0008c0050	a0001c0001t0001 a0001c0002t0002 a0001c0048t0002 others(1): Show a0001c0001t0001 a0001c0002t0002 a0001c0048t0002 a0008c0050t0003	a0001c0001t0001g0019 a0001c0002t0002g0256 a0001c0048t0002g0111 others(1): Show a0001c0001t0001g0019 a0001c0002t0002g0256 a0001c0048t0002g0111 a0008c0050t0003g0136	4	309	0.0129	14	c.64- others(31): Show c.64-10650_64-10637dupAAAAAAAAAAAAAA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr17	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(7): Show TTAAATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp2 NA18522.hp2 NA18940.hp2 others(1): Show HG02965.hp2 NA18522.hp2 NA18940.hp2 NA21309.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0005 a0007c0029 a0001c0001 a0001c0005 a0007c0029	a0001c0001t0001 a0001c0005t0001 a0007c0029t0001 a0001c0001t0001 a0001c0005t0001 a0007c0029t0001	a0001c0001t0001g0152 a0001c0005t0001g0040 a0001c0005t0001g0140 others(1): Show a0001c0001t0001g0152 a0001c0005t0001g0040 a0001c0005t0001g0140 a0007c0029t0001g0181	4	309	0.0129	14	c.21 others(25): Show c.2102_*2103insTAAATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP24_chr4_85470150_86007666	85655766	C C	CATATATA others(7): Show CATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp2 HG02055.hp1 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0069 a0001c0001t0001g0032 a0001c0001t0001g0069	2	108	0.0185	14	c.181 others(33): Show c.181-66105_181-66092dupTATATATATATATA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85655812	G G	GAGAGAGA others(7): Show GAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01070.hp2 HG01074.hp2 others(4): Show HG00639.hp2 HG01070.hp2 HG01074.hp2 HG01346.hp1 HG02257.hp1 HG02897.hp2 HG03942.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0014 a0001c0001 a0001c0002 a0003c0014	a0001c0001t0001 a0001c0001t0005 a0001c0001t0020 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0020 a0001c0002t0002 a0003c0014t0001	a0001c0001t0001g0023 a0001c0001t0001g0079 a0001c0001t0001g0099 others(4): Show a0001c0001t0001g0023 a0001c0001t0001g0079 a0001c0001t0001g0099 a0001c0001t0005g0075 a0001c0001t0020g0002 a0001c0002t0002g0005 a0003c0014t0001g0017	7	108	0.0648	14	c.181 others(33): Show c.181-66068_181-66067insGAGAGAGAAAGAGA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85655814	G G	GAGAGAGA others(7): Show GAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0018 a0002c0006t0018	a0002c0006t0018g0040 a0002c0006t0018g0040	1	108	0.0093	14	c.181 others(33): Show c.181-66068_181-66067insGAGAGAGAGAAAGA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85655820	G G	GAGAGAGA others(7): Show GAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	108	0.0093	14	c.181 others(33): Show c.181-66052_181-66051insAAGAGAGAGAGAGA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85733060	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02486.hp1 HG02622.hp1 others(1): Show HG02055.hp1 HG02486.hp1 HG02622.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0008 a0001c0001 a0001c0007 a0001c0008	a0001c0001t0001 a0001c0007t0003 a0001c0008t0014 a0001c0001t0001 a0001c0007t0003 a0001c0008t0014	a0001c0001t0001g0032 a0001c0001t0001g0048 a0001c0007t0003g0044 others(1): Show a0001c0001t0001g0032 a0001c0001t0001g0048 a0001c0007t0003g0044 a0001c0008t0014g0063	4	108	0.0370	14	c.268 others(33): Show c.268+11096_268+11109dupTTTTTTTTTTTTTT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85824663	C C	CTAAAATC others(7): Show CTAAAATCCGGATCT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00735.hp1 HG01069.hp2 others(17): Show HG00423.hp1 HG00735.hp1 HG01069.hp2 HG01071.hp2 HG01433.hp1 HG02155.hp1 HG02155.hp2 HG02615.hp1 HG02809.hp2 HG03486.hp2 HG03579.hp1 HG03579.hp2 HG04115.hp1 HG04115.hp2 HG04199.hp1 NA18522.hp2 NA18906.hp2 NA18968.hp1 NA19240.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0002t0012 a0001c0002t0013 others(3): Show a0001c0001t0001 a0001c0002t0012 a0001c0002t0013 a0001c0003t0001 a0001c0004t0004 a0001c0005t0004	a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 others(17): Show a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0073 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0002t0012g0084 a0001c0002t0013g0029 a0001c0003t0001g0004 a0001c0003t0001g0007 a0001c0003t0001g0020 a0001c0003t0001g0091 a0001c0004t0004g0033 a0001c0004t0004g0035 a0001c0005t0004g0037	20	108	0.1852	14	c.269 others(33): Show c.269-98976_269-98963dupGGATCTTAAAATCC	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85827461	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01433.hp2 HG02257.hp1 others(1): Show HG01167.hp2 HG01433.hp2 HG02257.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0001 a0001c0002t0007 a0001c0007t0003 a0001c0001t0001 a0001c0002t0007 a0001c0007t0003	a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0002t0007g0056 others(1): Show a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0002t0007g0056 a0001c0007t0003g0044	4	108	0.0370	14	c.269 others(33): Show c.269-96144_269-96131dupGTGTGTGTGTGTGT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85867904	T T	TATATATG others(7): Show TATATATGTACATAC	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00423.hp1 HG00423.hp2 others(34): Show HG00323.hp1 HG00423.hp1 HG00423.hp2 HG00639.hp2 HG00642.hp1 HG01069.hp1 HG01070.hp1 HG01071.hp1 HG01074.hp1 HG01109.hp1 HG01168.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01978.hp1 HG02055.hp2 HG02080.hp1 HG02080.hp2 HG02155.hp2 HG02258.hp2 HG02451.hp2 HG02615.hp2 HG02622.hp2 HG02717.hp1 HG02738.hp1 HG02738.hp2 HG02897.hp1 HG03492.hp1 HG03654.hp1 HG03654.hp2 HG03942.hp2 HG04199.hp2 HG04204.hp1 HG04204.hp2 NA18906.hp1 NA18968.hp2 NA20300.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0013 a0002c0006 a0003c0014 a0005c0009	a0001c0001t0001 a0001c0001t0015 a0001c0001t0020 others(8): Show a0001c0001t0001 a0001c0001t0015 a0001c0001t0020 a0001c0002t0002 a0001c0003t0001 a0001c0003t0011 a0001c0004t0003 a0001c0013t0001 a0002c0006t0006 a0003c0014t0001 a0005c0009t0002	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0012 others(34): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0012 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0043 a0001c0001t0001g0062 a0001c0001t0001g0066 a0001c0001t0001g0069 a0001c0001t0001g0103 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0015g0049 a0001c0001t0020g0002 a0001c0002t0002g0006 a0001c0002t0002g0011 a0001c0002t0002g0028 a0001c0002t0002g0076 a0001c0002t0002g0077 a0001c0002t0002g0078 a0001c0002t0002g0092 a0001c0002t0002g0093 a0001c0002t0002g0096 a0001c0002t0002g0098 a0001c0002t0002g0105 a0001c0003t0001g0015 a0001c0003t0001g0106 a0001c0003t0011g0087 a0001c0004t0003g0042 a0001c0004t0003g0050 a0001c0004t0003g0089 a0001c0013t0001g0013 a0002c0006t0006g0095 a0003c0014t0001g0017 a0005c0009t0002g0064	37	108	0.3426	14	c.269 others(33): Show c.269-55739_269-55738insTGTACATACATATA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP26_chr5_142765377_143234007	142858061	C C	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG03654.hp2 NA19082.hp2 HG00558.hp2 HG03654.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0034 a0001c0003t0001 a0001c0001t0002 a0001c0001t0034 a0001c0003t0001	a0001c0001t0002g0126 a0001c0001t0034g0192 a0001c0003t0001g0031 a0001c0001t0002g0126 a0001c0001t0034g0192 a0001c0003t0001g0031	3	198	0.0152	14	c.155 others(33): Show c.155-15318_155-15305dupTGTGTGTGTGTGTG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142867288	G G	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0081 a0001c0001t0022g0081	1	198	0.0051	14	c.155 others(31): Show c.155-6085_155-6072dupGTGTGTGTGTGTGT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142890151	A A	AAAAAAAA others(7): Show AAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0162 a0001c0002t0001g0162	1	198	0.0051	14	c.487 others(31): Show c.487-4086_487-4085insAAAAAAAAAATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142936108	A A	AACACACA others(7): Show AACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0082 a0001c0001t0053g0082	1	198	0.0051	14	c.110 others(33): Show c.1107+4008_1107+4021dupACACACACACACAC	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142949196	A A	AGAGAGAG others(7): Show AGAGAGAGGAGAGAG	intron_variant intron_variant	MODIFIER	HG00323.hp2 NA18945.hp1 HG00323.hp2 NA18945.hp1	a0001 a0001	a0001c0003 a0001c0006 a0001c0003 a0001c0006	a0001c0003t0008 a0001c0006t0044 a0001c0003t0008 a0001c0006t0044	a0001c0003t0008g0009 a0001c0006t0044g0193 a0001c0003t0008g0009 a0001c0006t0044g0193	2	198	0.0101	14	c.110 others(35): Show c.1107+17078_1107+17079insGAGAGAGGAGAGAG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142949200	A A	AGAGAGAG others(7): Show AGAGAGAGGAGAGAG	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0171 a0001c0001t0039g0171	1	198	0.0051	14	c.110 others(35): Show c.1107+17082_1107+17083insGAGAGAGGAGAGAG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142955095	T T	TACACACA others(7): Show TACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0056 a0001c0001t0004g0056	1	198	0.0051	14	c.110 others(35): Show c.1107+22987_1107+23000dupACACACACACACAC	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963179	T T	TATATATA others(7): Show TATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0052 a0001c0001t0043g0052	1	198	0.0051	14	c.110 others(35): Show c.1107+31067_1107+31068insCATATATATATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar

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