Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FOXJ3_chr1_42171548_42340235	42222034	G G	GGGGAGGA others(8): Show GGGGAGGAGAAGAAGA	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0019 a0003c0003t0019	a0003c0003t0019g0191 a0003c0003t0019g0191	1	332	0.0030	15	c.528 others(32): Show c.528+5848_528+5849insTCTTCTTCTCCTCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42222040	G G	GAGAAGAA others(8): Show GAGAAGAAGAAGAAGA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0322 a0001c0001t0004g0322	1	332	0.0030	15	c.528 others(32): Show c.528+5842_528+5843insTCTTCTTCTTCTTCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42222046	G G	GAGAAGAA others(8): Show GAGAAGAAGAAGAAGA	intron_variant intron_variant	MODIFIER	HG02717.hp2 NA19054.hp1 HG02717.hp2 NA19054.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0007c0013 a0001c0001 a0007c0013	a0001c0001t0002 a0007c0013t0002 a0001c0001t0002 a0007c0013t0002	a0001c0001t0002g0244 a0007c0013t0002g0232 a0001c0001t0002g0244 a0007c0013t0002g0232	2	332	0.0060	15	c.528 others(32): Show c.528+5822_528+5836dupTCTTCTTCTTCTTCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42311649	A A	ATAGTAGT others(8): Show ATAGTAGTAGTAGTAG	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0138 a0001c0001t0001g0138	1	332	0.0030	15	c.-17 others(30): Show c.-17-540_-17-539insCTACTACTACTACTA	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	1/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42311650	A A	AAGTAGTA others(8): Show AAGTAGTAGTAGTAGT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01106.hp2 HG01167.hp2 others(21): Show HG00408.hp1 HG01106.hp2 HG01167.hp2 HG01891.hp1 HG01993.hp1 HG02015.hp2 HG02055.hp2 HG02258.hp2 HG02523.hp2 HG02647.hp1 HG02647.hp2 HG02976.hp2 HG03209.hp2 HG03492.hp2 HG04199.hp2 NA18939.hp2 NA18945.hp1 NA18969.hp1 NA18971.hp1 NA19003.hp2 NA19012.hp2 NA19030.hp2 NA19077.hp1 NA19082.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0020 a0003c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0011 others(21): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0110 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0204 a0001c0001t0001g0208 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0002g0233 a0001c0001t0009g0221 a0001c0001t0020g0141 a0003c0003t0001g0184	24	332	0.0723	15	c.-17 others(30): Show c.-17-555_-17-541dupACTACTACTACTACT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	1/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42316333	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01168.hp1 HG01175.hp1 others(12): Show HG00438.hp2 HG01168.hp1 HG01175.hp1 HG02027.hp2 HG02280.hp1 HG02300.hp2 HG02738.hp2 HG03225.hp2 NA18906.hp1 NA18979.hp2 NA18985.hp1 NA18987.hp2 NA18990.hp1 NA19011.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0009 a0001c0001t0013 a0001c0001t0017	a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 others(12): Show a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0201 a0001c0001t0001g0209 a0001c0001t0001g0215 a0001c0001t0002g0195 a0001c0001t0005g0187 a0001c0001t0009g0129 a0001c0001t0013g0238 a0001c0001t0017g0203	15	332	0.0452	15	c.-17 others(32): Show c.-17-5238_-17-5224dupAAAAAAAAAAAAAAA	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	1/12			chr1	TogoVar
FOXK1_chr7_4677295_4776442	4704834	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01884.hp2 HG02055.hp1 others(6): Show HG01081.hp2 HG01884.hp2 HG02055.hp1 HG02486.hp1 HG02615.hp1 HG03130.hp2 HG03209.hp1 HG03453.hp2 NA18906.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0006 others(1): Show a0001c0002 a0001c0003 a0001c0006 a0001c0014	a0001c0002t0018 a0001c0002t0041 a0001c0003t0026 others(5): Show a0001c0002t0018 a0001c0002t0041 a0001c0003t0026 a0001c0003t0100 a0001c0006t0052 a0001c0006t0053 a0001c0006t0054 a0001c0014t0006	a0001c0002t0018g0283 a0001c0002t0041g0102 a0001c0003t0026g0246 others(6): Show a0001c0002t0018g0283 a0001c0002t0041g0102 a0001c0003t0026g0246 a0001c0003t0100g0248 a0001c0006t0052g0078 a0001c0006t0053g0076 a0001c0006t0054g0075 a0001c0014t0006g0082 a0001c0014t0006g0249	9	294	0.0306	15	c.560 others(34): Show c.560+21967_560+21981dupTTTTTTTTTTTTTTT	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(8): Show ATATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0050 a0003c0004t0050	a0003c0004t0050g0133 a0003c0004t0050g0133	1	308	0.0033	15	c.60 others(26): Show c.6056_*6057insTATATATATATATTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607556	T T	TATATATA others(8): Show TATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01516.hp1 HG02698.hp1 HG01516.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0081 a0001c0001t0002g0137 a0001c0001t0002g0081 a0001c0001t0002g0137	2	308	0.0065	15	c.60 others(26): Show c.6057_*6058insATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2955		chr17	TogoVar
FOXL1_chr16_86573549_86588478	86580589	C C	CAATACAC others(8): Show CAATACACATGCAGCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0000 a0001c0001t0030g0000	1	462	0.0022	15	c.83 others(24): Show c.830_*844dupATACACATGCAGCTA	FOXL1	ENSG00000176678.6	transcript	ENST00000320241.5	protein_coding	1/1	845	INFO_REALIGN_3_PRIME	chr16	TogoVar
FOXM1_chr12_2852680_2882174	2870957	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA21309.hp2 NA19030.hp2 NA21309.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0006 a0002c0006t0007 a0002c0006t0006 a0002c0006t0007	a0002c0006t0006g0047 a0002c0006t0007g0046 a0002c0006t0006g0047 a0002c0006t0007g0046	2	438	0.0046	15	c.654 others(32): Show c.654+1124_654+1138dupTTTTTTTTTTTTTTT	FOXM1	ENSG00000111206.13	transcript	ENST00000359843.8	protein_coding	3/8			chr12	TogoVar
FOXN2_chr2_48309682_48384295	48352049	T T	TTTTGTGC others(8): Show TTTTGTGCTTCAGTTG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0302 a0001c0002t0002g0302	1	344	0.0029	15	c.537 others(32): Show c.537+5302_537+5303insTGCTTCAGTTGTTTG	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
FOXN2_chr2_48309682_48384295	48352055	G G	GCTTCAGT others(8): Show GCTTCAGTTGTTTGGA	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00408.hp1 others(107): Show HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00609.hp1 HG00621.hp2 HG00738.hp2 HG01070.hp2 HG01074.hp2 HG01081.hp2 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01255.hp2 HG01257.hp1 HG01433.hp1 HG01516.hp2 HG01517.hp2 HG01928.hp2 HG01952.hp2 HG01975.hp1 HG01978.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp2 HG02155.hp1 HG02559.hp2 HG02602.hp2 HG02698.hp1 HG02717.hp2 HG02735.hp2 HG02976.hp2 HG03098.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03492.hp1 HG03579.hp1 HG03669.hp1 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04199.hp1 NA18612.hp2 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18941.hp2 NA18942.hp1 NA18944.hp2 NA18945.hp2 NA18946.hp2 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18960.hp2 NA18963.hp1 NA18969.hp2 NA18970.hp1 NA18972.hp2 NA18975.hp2 NA18978.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18988.hp2 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18992.hp1 NA18994.hp2 NA18995.hp1 NA18998.hp1 NA19000.hp2 NA19002.hp2 NA19004.hp1 NA19005.hp2 NA19007.hp2 NA19011.hp2 NA19056.hp1 NA19057.hp2 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19064.hp2 NA19068.hp2 NA19072.hp1 NA19074.hp1 NA19075.hp2 NA19077.hp2 NA19078.hp1 NA19079.hp2 NA19083.hp2 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 others(6): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0006 a0001c0002t0009 a0001c0002t0010 a0001c0002t0022 a0001c0002t0023 a0001c0003t0007	a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0219 others(105): Show a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0219 a0001c0001t0001g0230 a0001c0001t0001g0322 a0001c0002t0002g0009 a0001c0002t0002g0010 a0001c0002t0002g0032 a0001c0002t0002g0037 a0001c0002t0002g0038 a0001c0002t0002g0041 a0001c0002t0002g0048 a0001c0002t0002g0049 a0001c0002t0002g0229 a0001c0002t0002g0257 a0001c0002t0002g0258 a0001c0002t0002g0259 a0001c0002t0002g0260 a0001c0002t0002g0261 a0001c0002t0002g0262 a0001c0002t0002g0263 a0001c0002t0002g0264 a0001c0002t0002g0265 a0001c0002t0002g0266 a0001c0002t0002g0267 a0001c0002t0002g0268 a0001c0002t0002g0269 a0001c0002t0002g0270 a0001c0002t0002g0271 a0001c0002t0002g0272 a0001c0002t0002g0273 a0001c0002t0002g0274 a0001c0002t0002g0275 a0001c0002t0002g0276 a0001c0002t0002g0277 a0001c0002t0002g0278 a0001c0002t0002g0279 a0001c0002t0002g0280 a0001c0002t0002g0281 a0001c0002t0002g0282 a0001c0002t0002g0284 a0001c0002t0002g0285 a0001c0002t0002g0286 a0001c0002t0002g0287 a0001c0002t0002g0288 a0001c0002t0002g0289 a0001c0002t0002g0290 a0001c0002t0002g0291 a0001c0002t0002g0292 a0001c0002t0002g0293 a0001c0002t0002g0294 a0001c0002t0002g0295 a0001c0002t0002g0296 a0001c0002t0002g0297 a0001c0002t0002g0298 a0001c0002t0002g0299 a0001c0002t0002g0300 a0001c0002t0002g0301 a0001c0002t0002g0303 a0001c0002t0002g0304 a0001c0002t0002g0305 a0001c0002t0002g0306 a0001c0002t0002g0307 a0001c0002t0002g0308 a0001c0002t0002g0309 a0001c0002t0002g0310 a0001c0002t0002g0311 a0001c0002t0002g0312 a0001c0002t0002g0313 a0001c0002t0002g0314 a0001c0002t0002g0315 a0001c0002t0002g0316 a0001c0002t0002g0317 a0001c0002t0002g0318 a0001c0002t0002g0319 a0001c0002t0002g0320 a0001c0002t0002g0321 a0001c0002t0002g0323 a0001c0002t0002g0324 a0001c0002t0002g0326 a0001c0002t0002g0327 a0001c0002t0002g0329 a0001c0002t0002g0332 a0001c0002t0002g0333 a0001c0002t0003g0016 a0001c0002t0003g0245 a0001c0002t0003g0247 a0001c0002t0003g0248 a0001c0002t0003g0249 a0001c0002t0003g0250 a0001c0002t0003g0251 a0001c0002t0003g0255 a0001c0002t0003g0256 a0001c0002t0006g0236 a0001c0002t0006g0238 a0001c0002t0006g0239 a0001c0002t0006g0240 a0001c0002t0006g0241 a0001c0002t0006g0242 a0001c0002t0006g0243 a0001c0002t0009g0283 a0001c0002t0009g0325 a0001c0002t0010g0244 a0001c0002t0010g0246 a0001c0002t0022g0237 a0001c0002t0023g0330 a0001c0003t0007g0011 a0001c0003t0007g0012	110	344	0.3198	15	c.537 others(32): Show c.537+5313_537+5327dupGTTTGGACTTCAGTT	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
FOXN2_chr2_48309682_48384295	48379795	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0034 a0001c0001t0021g0034	1	344	0.0029	15	c.43 others(26): Show c.4352_*4353insAAAAAAAAAAAAAAA	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding		501		chr2	TogoVar
FOXN3_chr14_89151177_89422233	89312284	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG06807.hp2 NA19060.hp1 HG03139.hp1 HG06807.hp2 NA19060.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0007 a0001c0001 a0003c0007	a0001c0001t0002 a0001c0001t0041 a0003c0007t0022 a0001c0001t0002 a0001c0001t0041 a0003c0007t0022	a0001c0001t0002g0153 a0001c0001t0041g0156 a0003c0007t0022g0044 a0001c0001t0002g0153 a0001c0001t0041g0156 a0003c0007t0022g0044	3	230	0.0130	15	c.681 others(34): Show c.681-31285_681-31271dupTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89325356	C C	CACCACTA others(8): Show CACCACTACCACCACT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00544.hp1 HG00597.hp2 others(47): Show HG00423.hp1 HG00544.hp1 HG00597.hp2 HG00609.hp2 HG00673.hp1 HG00738.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp2 HG01175.hp2 HG01192.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01934.hp2 HG01975.hp1 HG01993.hp2 HG02055.hp1 HG02109.hp1 HG02135.hp2 HG02155.hp1 HG02155.hp2 HG02273.hp1 HG02300.hp2 HG02451.hp2 HG02559.hp2 HG02723.hp2 HG02809.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG03195.hp2 HG03492.hp2 HG03516.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18946.hp2 NA18959.hp2 NA18968.hp2 NA18969.hp2 NA18997.hp1 NA19078.hp2 NA20300.hp1 NA20905.hp1 NA21309.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0005 a0001c0001 a0001c0002 a0004c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(35): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0020 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0044 a0001c0001t0048 a0001c0001t0065 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0073 a0001c0001t0074 a0001c0001t0077 a0001c0001t0078 a0001c0001t0081 a0001c0001t0082 a0001c0001t0084 a0001c0001t0089 a0001c0001t0093 a0001c0001t0094 a0001c0002t0011 a0001c0002t0066 a0004c0005t0079	a0001c0001t0001g0039 a0001c0001t0001g0064 a0001c0001t0001g0072 others(47): Show a0001c0001t0001g0039 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0085 a0001c0001t0001g0131 a0001c0001t0001g0212 a0001c0001t0001g0214 a0001c0001t0001g0220 a0001c0001t0001g0225 a0001c0001t0003g0069 a0001c0001t0003g0132 a0001c0001t0004g0074 a0001c0001t0006g0219 a0001c0001t0007g0080 a0001c0001t0008g0032 a0001c0001t0009g0216 a0001c0001t0010g0210 a0001c0001t0011g0180 a0001c0001t0011g0181 a0001c0001t0011g0183 a0001c0001t0011g0209 a0001c0001t0013g0057 a0001c0001t0015g0140 a0001c0001t0017g0075 a0001c0001t0020g0005 a0001c0001t0027g0200 a0001c0001t0028g0202 a0001c0001t0029g0048 a0001c0001t0030g0007 a0001c0001t0031g0002 a0001c0001t0032g0006 a0001c0001t0044g0152 a0001c0001t0048g0038 a0001c0001t0065g0201 a0001c0001t0069g0122 a0001c0001t0070g0070 a0001c0001t0071g0186 a0001c0001t0073g0182 a0001c0001t0074g0211 a0001c0001t0077g0187 a0001c0001t0078g0067 a0001c0001t0081g0098 a0001c0001t0082g0065 a0001c0001t0084g0073 a0001c0001t0089g0170 a0001c0001t0093g0115 a0001c0001t0094g0034 a0001c0002t0011g0111 a0001c0002t0066g0113 a0004c0005t0079g0047	50	230	0.2174	15	c.680 others(34): Show c.680+25315_680+25316insAGTGGTGGTAGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89334611	C C	CATAAAAT others(8): Show CATAAAATAAAATAAA	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18960.hp2 NA18964.hp1 others(3): Show NA18959.hp1 NA18960.hp2 NA18964.hp1 NA18997.hp2 NA19009.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 a0001c0001t0054 a0001c0003t0001	a0001c0001t0001g0109 a0001c0001t0004g0066 a0001c0001t0013g0033 others(3): Show a0001c0001t0001g0109 a0001c0001t0004g0066 a0001c0001t0013g0033 a0001c0001t0054g0068 a0001c0003t0001g0054 a0001c0003t0001g0137	6	230	0.0261	15	c.680 others(34): Show c.680+16046_680+16060dupTTTATTTTATTTTAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360751	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA19088.hp2 NA18943.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0036 a0001c0001t0009 a0001c0001t0036	a0001c0001t0009g0150 a0001c0001t0036g0011 a0001c0001t0009g0150 a0001c0001t0036g0011	2	230	0.0087	15	c.544 others(32): Show c.544-9944_544-9943insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360766	C C	CCACTACC others(8): Show CCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA18522.hp2 HG02109.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0064 a0001c0001t0068 a0001c0001t0064 a0001c0001t0068	a0001c0001t0064g0160 a0001c0001t0068g0169 a0001c0001t0064g0160 a0001c0001t0068g0169	2	230	0.0087	15	c.544 others(32): Show c.544-9959_544-9958insCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360821	C C	CACCACCT others(8): Show CACCACCTCCAGCACT	intron_variant intron_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0094 a0001c0001t0006g0094	1	230	0.0044	15	c.544 others(34): Show c.544-10014_544-10013insAGTGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360856	C C	CCACTACC others(8): Show CCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18995.hp1 NA18964.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0025 a0001c0001t0001 a0001c0001t0025	a0001c0001t0001g0227 a0001c0001t0025g0228 a0001c0001t0001g0227 a0001c0001t0025g0228	2	230	0.0087	15	c.544 others(34): Show c.544-10049_544-10048insCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360857	C C	CACCACCA others(8): Show CACCACCACCACCACT	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18968.hp2 NA18950.hp1 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0220 a0001c0001t0004g0191 a0001c0001t0001g0220 a0001c0001t0004g0191	2	230	0.0087	15	c.544 others(34): Show c.544-10050_544-10049insAGTGGTGGTGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360868	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0021 a0001c0001t0009g0021	1	230	0.0044	15	c.544 others(34): Show c.544-10061_544-10060insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360868	C C	CCACTACC others(8): Show CCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0106 a0001c0001t0002g0106	1	230	0.0044	15	c.544 others(34): Show c.544-10061_544-10060insCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360923	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0041 a0001c0001t0008g0041	1	230	0.0044	15	c.544 others(34): Show c.544-10116_544-10115insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360961	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0207	1	230	0.0044	15	c.544 others(34): Show c.544-10154_544-10153insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360987	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0183 a0001c0001t0011g0183	1	230	0.0044	15	c.544 others(34): Show c.544-10180_544-10179insTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361015	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02602.hp2 HG01993.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0082 a0001c0001t0045 a0001c0001t0082	a0001c0001t0045g0030 a0001c0001t0082g0065 a0001c0001t0045g0030 a0001c0001t0082g0065	2	230	0.0087	15	c.544 others(34): Show c.544-10208_544-10207insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361023	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	230	0.0044	15	c.544 others(34): Show c.544-10230_544-10216dupTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361050	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0153 a0001c0001t0002g0153	1	230	0.0044	15	c.544 others(34): Show c.544-10243_544-10242insTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361067	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	230	0.0044	15	c.544 others(34): Show c.544-10260_544-10259insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361101	A A	ACCTCCAG others(8): Show ACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0221 a0001c0001t0002g0221	1	230	0.0044	15	c.544 others(34): Show c.544-10294_544-10293insAGGTGGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361105	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	230	0.0044	15	c.544 others(34): Show c.544-10298_544-10297insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361133	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	HG03017.hp1 NA19088.hp2 HG03017.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0036 a0001c0001t0024 a0001c0001t0036	a0001c0001t0024g0105 a0001c0001t0036g0011 a0001c0001t0024g0105 a0001c0001t0036g0011	2	230	0.0087	15	c.544 others(34): Show c.544-10326_544-10325insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361159	G G	GCACCACC others(8): Show GCACCACCTCCACCAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01978.hp1 HG04184.hp1 others(1): Show HG01243.hp1 HG01978.hp1 HG04184.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0012 a0001c0001t0001 a0001c0001t0007 a0001c0001t0012	a0001c0001t0001g0046 a0001c0001t0001g0118 a0001c0001t0007g0014 others(1): Show a0001c0001t0001g0046 a0001c0001t0001g0118 a0001c0001t0007g0014 a0001c0001t0012g0125	4	230	0.0174	15	c.544 others(34): Show c.544-10352_544-10351insGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361160	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	230	0.0044	15	c.544 others(34): Show c.544-10353_544-10352insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361167	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0180 a0001c0001t0011g0181 a0001c0001t0011g0180 a0001c0001t0011g0181	2	230	0.0087	15	c.544 others(34): Show c.544-10360_544-10359insTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361295	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA19078.hp2 NA19078.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0079 a0004c0005t0079	a0004c0005t0079g0047 a0004c0005t0079g0047	1	230	0.0044	15	c.544 others(34): Show c.544-10488_544-10487insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361321	G G	GCACCACC others(8): Show GCACCACCACCTCCAC	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0040 a0001c0001t0010g0040	1	230	0.0044	15	c.544 others(34): Show c.544-10514_544-10513insGTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361356	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	230	0.0044	15	c.544 others(34): Show c.544-10563_544-10549dupTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361361	C C	CACCACCT others(8): Show CACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03704.hp2 HG03239.hp1 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0142 a0001c0001t0001g0035 a0001c0001t0001g0142	2	230	0.0087	15	c.544 others(34): Show c.544-10554_544-10553insAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361383	A A	ACCTCCAG others(8): Show ACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0088 a0001c0001t0088	a0001c0001t0088g0095 a0001c0001t0088g0095	1	230	0.0044	15	c.544 others(34): Show c.544-10576_544-10575insAGGTGGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361481	G G	GCACCACC others(8): Show GCACCACCACCACCAC	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	230	0.0044	15	c.544 others(34): Show c.544-10674_544-10673insGTGGTGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361481	G G	GCACTACC others(8): Show GCACTACCTCCACCAC	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0196 a0001c0001t0004g0196	1	230	0.0044	15	c.544 others(34): Show c.544-10674_544-10673insGTGGTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361493	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0159 a0001c0001t0052g0159	1	230	0.0044	15	c.544 others(34): Show c.544-10686_544-10685insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361516	T T	TCCACCAC others(8): Show TCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0040 a0001c0001t0010g0040	1	230	0.0044	15	c.544 others(34): Show c.544-10723_544-10709dupTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361547	G G	GCACCACC others(8): Show GCACCACCTCCACCAC	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0200 a0001c0001t0027g0200	1	230	0.0044	15	c.544 others(34): Show c.544-10754_544-10740dupGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361559	C C	CCACCACC others(8): Show CCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02622.hp1 HG01070.hp2 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0033 a0001c0001t0018 a0001c0001t0033	a0001c0001t0018g0091 a0001c0001t0033g0008 a0001c0001t0018g0091 a0001c0001t0033g0008	2	230	0.0087	15	c.544 others(34): Show c.544-10752_544-10751insCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361559	C C	CCACTACC others(8): Show CCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG01517.hp1 HG02056.hp1 HG01517.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0047 a0001c0001t0005 a0001c0001t0047	a0001c0001t0005g0099 a0001c0001t0047g0116 a0001c0001t0005g0099 a0001c0001t0047g0116	2	230	0.0087	15	c.544 others(34): Show c.544-10752_544-10751insCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361571	C C	CCACTACC others(8): Show CCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0208 a0001c0001t0003g0208	1	230	0.0044	15	c.544 others(34): Show c.544-10764_544-10763insCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar

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