Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHN2_chr7_29189775_29519328	29252586	T T	TTTTTGTT others(8): Show TTTTTGTTTTGTTTTG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00558.hp2 HG00609.hp1 others(32): Show HG00140.hp2 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00673.hp1 HG01081.hp2 HG01168.hp2 HG01257.hp2 HG01496.hp2 HG01928.hp2 HG01952.hp1 HG01978.hp2 HG02040.hp1 HG02071.hp1 HG02071.hp2 HG02080.hp2 HG02135.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp1 HG02280.hp1 HG02572.hp1 HG02735.hp2 HG03710.hp1 HG04228.hp1 NA18612.hp1 NA18948.hp2 NA18957.hp1 NA18970.hp1 NA18986.hp2 NA19005.hp1 NA19085.hp1 NA19085.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0005t0007 a0001c0006t0022 a0002c0003t0004 a0002c0004t0007 a0002c0004t0017	a0001c0001t0001g0064 a0001c0001t0001g0082 a0001c0001t0001g0224 others(32): Show a0001c0001t0001g0064 a0001c0001t0001g0082 a0001c0001t0001g0224 a0001c0001t0003g0049 a0001c0001t0003g0079 a0001c0001t0003g0200 a0001c0001t0003g0204 a0001c0001t0005g0018 a0001c0001t0005g0193 a0001c0001t0006g0037 a0001c0001t0006g0066 a0001c0001t0007g0122 a0001c0001t0007g0123 a0001c0001t0007g0223 a0001c0001t0008g0065 a0001c0001t0008g0176 a0001c0001t0008g0178 a0001c0001t0008g0228 a0001c0001t0009g0017 a0001c0001t0009g0232 a0001c0002t0001g0063 a0001c0002t0002g0045 a0001c0002t0002g0081 a0001c0002t0002g0083 a0001c0002t0002g0215 a0001c0002t0004g0004 a0001c0002t0004g0074 a0001c0002t0004g0196 a0001c0005t0007g0092 a0001c0006t0022g0119 a0002c0003t0004g0021 a0002c0003t0004g0101 a0002c0003t0004g0203 a0002c0004t0007g0084 a0002c0004t0017g0128	35	232	0.1509	15	c.49+ others(32): Show c.49+57600_49+57601insGTTTTGTTTTGTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29268322	A A	ACACACAC others(8): Show ACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0174 a0001c0001t0005g0174	1	232	0.0043	15	c.49+ others(32): Show c.49+73332_49+73333insCACACACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12			chr7	TogoVar
CHN2_chr7_29189775_29519328	29396459	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0062 a0001c0002t0010g0062	1	232	0.0043	15	c.177 others(32): Show c.177-1902_177-1888dupAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29437597	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18957.hp1 NA18998.hp1 NA19080.hp2 NA18957.hp1 NA18998.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0032 a0001c0001t0003g0049 a0001c0001t0003g0138 a0001c0001t0003g0032 a0001c0001t0003g0049 a0001c0001t0003g0138	3	232	0.0129	15	c.576 others(34): Show c.576+36771_576+36785dupAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29442934	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02148.hp1 HG03831.hp2 HG01496.hp2 HG02148.hp1 HG03831.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0008 a0002c0003t0004 a0001c0001t0001 a0001c0001t0008 a0002c0003t0004	a0001c0001t0001g0136 a0001c0001t0008g0228 a0002c0003t0004g0146 a0001c0001t0001g0136 a0001c0001t0008g0228 a0002c0003t0004g0146	3	232	0.0129	15	c.577 others(34): Show c.577-37342_577-37328dupTTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29473482	T T	TGTGTGTG others(8): Show TGTGTGTGTGTGTTTG	intron_variant intron_variant	MODIFIER	NA19000.hp2 NA19000.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0004	a0002c0003t0004g0071 a0002c0003t0004g0071	1	232	0.0043	15	c.577 others(32): Show c.577-6797_577-6796insGTGTGTGTGTGTTTG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12			chr7	TogoVar
CHN2_chr7_29189775_29519328	29494950	T T	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0041 a0001c0002t0002g0041	1	232	0.0043	15	c.655 others(30): Show c.655-985_655-971dupAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23759379	C C	CCTTCTTT others(8): Show CCTTCTTTCTTTCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	392	0.0026	15	c.17 others(26): Show c.1796_*1797insCTTCTTTCTTTCTTT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		445		chr16	TogoVar
CHPF_chr2_219533954_219548809	219535186	G G	GCCCCCCC others(8): Show GCCCCCCCCCCCCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0017 a0001c0002t0001g0017	1	396	0.0025	15	c.41 others(26): Show c.4196_*4197insGGGGGGGGGGGGGGG	CHPF	ENSG00000123989.15	transcript	ENST00000243776.11	protein_coding		3767		chr2	TogoVar
CHRDL1_chrX_110668856_110800817	110689656	C C	CTATATAT others(8): Show CTATATATCTATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG04115.hp1 HG04204.hp1 others(5): Show HG00099.hp2 HG04115.hp1 HG04204.hp1 NA18955.hp1 NA18977.hp1 NA18986.hp1 NA18994.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 a0001c0001t0038 a0001c0001t0042	a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0002g0073 others(5): Show a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0002g0073 a0001c0001t0002g0128 a0001c0001t0009g0057 a0001c0001t0010g0162 a0001c0001t0038g0140 a0001c0001t0042g0082	8	172	0.0465	15	c.779 others(30): Show c.779-854_779-853insATATATAGATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRD_chr3_184375054_184394829	184387207	G G	GAGGGGCA others(8): Show GAGGGGCACAGATTCC	intron_variant intron_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0002 a0002	a0002c0022 a0002c0022	a0002c0022t0001 a0002c0022t0001	a0002c0022t0001g0118 a0002c0022t0001g0118	1	428	0.0023	15	c.234 others(32): Show c.2347+102_2347+116dupGGGGCACAGATTCCA	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHRM2_chr7_136863652_137025213	136867907	T T	TATATATA others(8): Show TATATATATATTCTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00609.hp2 HG00673.hp2 others(22): Show HG00597.hp1 HG00609.hp2 HG00673.hp2 HG01081.hp2 HG01952.hp1 HG02015.hp2 HG03710.hp2 HG03834.hp2 HG03942.hp1 HG04184.hp1 HG04228.hp1 NA18939.hp1 NA18939.hp2 NA18947.hp1 NA18950.hp1 NA18968.hp2 NA18975.hp2 NA18991.hp1 NA18995.hp2 NA19002.hp2 NA19064.hp2 NA19066.hp2 NA19072.hp1 NA19081.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0011 a0001c0001 a0001c0002 a0001c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 a0001c0001t0019 a0001c0001t0027 a0001c0001t0060 a0001c0001t0081 a0001c0002t0001 a0001c0002t0005 a0001c0011t0001	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(22): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0037 a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0015 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0005g0021 a0001c0001t0005g0024 a0001c0001t0010g0022 a0001c0001t0010g0025 a0001c0001t0010g0026 a0001c0001t0019g0039 a0001c0001t0027g0018 a0001c0001t0027g0020 a0001c0001t0060g0019 a0001c0001t0081g0017 a0001c0002t0001g0027 a0001c0002t0005g0030 a0001c0011t0001g0038	25	320	0.0781	15	c.-13 others(26): Show c.-1368_-1367insATATATATATTCTGG	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding		744		chr7	TogoVar
CHRM2_chr7_136863652_137025213	136867962	T T	TATATATA others(8): Show TATATATATATTCTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01123.hp1 others(28): Show HG01069.hp1 HG01071.hp2 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01433.hp2 HG01516.hp1 HG01891.hp1 HG01952.hp2 HG02148.hp1 HG02273.hp1 HG02451.hp1 HG02559.hp1 HG02818.hp1 HG02970.hp1 HG03139.hp2 HG03195.hp1 HG03492.hp1 HG03516.hp2 HG03834.hp1 HG04115.hp1 HG04228.hp2 NA18906.hp1 NA18945.hp1 NA18980.hp1 NA19043.hp1 NA19054.hp1 NA20300.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0010 a0004c0009 a0001c0001 a0001c0010 a0004c0009	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 others(10): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0024 a0001c0001t0025 a0001c0001t0041 a0001c0001t0050 a0001c0010t0004 a0004c0009t0028	a0001c0001t0002g0092 a0001c0001t0004g0075 a0001c0001t0004g0076 others(28): Show a0001c0001t0002g0092 a0001c0001t0004g0075 a0001c0001t0004g0076 a0001c0001t0004g0077 a0001c0001t0004g0078 a0001c0001t0004g0079 a0001c0001t0004g0080 a0001c0001t0004g0082 a0001c0001t0004g0090 a0001c0001t0007g0088 a0001c0001t0008g0072 a0001c0001t0008g0073 a0001c0001t0008g0074 a0001c0001t0008g0083 a0001c0001t0008g0084 a0001c0001t0008g0086 a0001c0001t0008g0087 a0001c0001t0008g0091 a0001c0001t0010g0065 a0001c0001t0010g0066 a0001c0001t0013g0068 a0001c0001t0013g0069 a0001c0001t0013g0070 a0001c0001t0014g0071 a0001c0001t0014g0093 a0001c0001t0024g0067 a0001c0001t0025g0094 a0001c0001t0041g0318 a0001c0001t0050g0085 a0001c0010t0004g0081 a0004c0009t0028g0303	31	320	0.0969	15	c.-13 others(26): Show c.-1313_-1312insATATATATATTCTGG	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding		689		chr7	TogoVar
CHRM2_chr7_136863652_137025213	136930898	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0065 a0001c0001t0010g0065	1	320	0.0031	15	c.-12 others(36): Show c.-124-61274_-124-61260dupAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	136949459	T T	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0208 a0001c0001t0046g0208	1	320	0.0031	15	c.-12 others(36): Show c.-124-42723_-124-42709dupAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239385822	T T	TTTCTTTC others(8): Show TTTCTTTCTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp1 HG02451.hp2 HG03239.hp2 HG01515.hp1 HG02451.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0027 a0001c0001t0001 a0001c0001t0004 a0001c0001t0027	a0001c0001t0001g0052 a0001c0001t0004g0024 a0001c0001t0027g0020 a0001c0001t0001g0052 a0001c0001t0004g0024 a0001c0001t0027g0020	3	116	0.0259	15	c.-19 others(26): Show c.-1926_-1925insTTCTTTCTTTCTTTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		745		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404719	A A	AATATATA others(8): Show AATATATATAATATAT	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0015 a0001c0001t0050g0015	1	116	0.0086	15	c.-52 others(36): Show c.-521+17501_-521+17502insATATATATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239662890	C C	CTCTTCTT others(8): Show CTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02723.hp2 HG02451.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0027 a0001c0001t0003 a0001c0001t0027	a0001c0001t0003g0039 a0001c0001t0027g0020 a0001c0001t0003g0039 a0001c0001t0027g0020	2	116	0.0172	15	c.-24 others(36): Show c.-249-15294_-249-15293insTTCTTCTTCTTCTTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239662893	C C	CTCCTCTT others(8): Show CTCCTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0078 a0001c0001t0013g0078	1	116	0.0086	15	c.-24 others(36): Show c.-249-15291_-249-15290insCTCTTCTTCTTCTTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239813925	A A	AAAAAAAA others(8): Show AAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0032 a0001c0001t0038g0032	1	116	0.0086	15	c.-14 others(36): Show c.-146-13318_-146-13317insAAAAACAAAAAAAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239874303	A A	ATATCTAT others(8): Show ATATCTATATACACAG	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	116	0.0086	15	c.-19 others(34): Show c.-19-33127_-19-33126insCTATATACACAGTAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	34053319	A A	AAAAAAAT others(8): Show AAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0032 a0001c0009t0032	a0001c0009t0032g0290 a0001c0009t0032g0290	1	338	0.0030	15	c.-76 others(32): Show c.-76+6449_-76+6450insAAAAATATATATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34053319	A A	AAAAATAT others(8): Show AAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03453.hp1 HG02647.hp1 HG03453.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0016 a0002c0003t0016	a0002c0003t0016g0297 a0002c0003t0016g0334 a0002c0003t0016g0297 a0002c0003t0016g0334	2	338	0.0059	15	c.-76 others(32): Show c.-76+6449_-76+6450insAAATATATATATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA10_chr11_3660587_3676384	3663033	A A	ATCATCTC others(8): Show ATCATCTCATCTCATC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG01884.hp1 HG02055.hp1 others(16): Show HG00609.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02129.hp2 HG02165.hp1 HG02572.hp2 HG03486.hp2 HG03834.hp1 HG04228.hp2 NA18948.hp1 NA18974.hp2 NA18997.hp2 NA19005.hp2 NA19054.hp2 NA19082.hp1 NA19088.hp1 NA19090.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0022 a0001c0001t0001g0029 a0001c0001t0001g0064 a0001c0001t0001g0073 a0001c0001t0001g0076	19	450	0.0422	15	c.30 others(26): Show c.3059_*3073dupGATGAGATGAGATGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2553		chr11	TogoVar
CHRNA10_chr11_3660587_3676384	3663089	A A	ATCATCTC others(8): Show ATCATCTCATCTCATC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp2 HG01496.hp1 HG01981.hp2 others(8): Show HG01070.hp2 HG01496.hp1 HG01981.hp2 HG02027.hp1 HG02145.hp1 HG02486.hp2 NA18956.hp2 NA18994.hp1 NA18994.hp2 NA19007.hp2 NA20805.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0019 a0001c0001 a0007c0019	a0001c0001t0001 a0007c0019t0001 a0001c0001t0001 a0007c0019t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0062 a0007c0019t0001g0054	11	450	0.0244	15	c.30 others(26): Show c.3003_*3017dupGATGAGATGAGATGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2497		chr11	TogoVar
CHRNA4_chr20_63338223_63366349	63356992	C C	CGACCACA others(8): Show CGACCACATCGCCATG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00323.hp1 others(110): Show HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02135.hp1 HG02135.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp2 HG02896.hp2 HG03017.hp1 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp2 HG03704.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18945.hp1 NA18945.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19064.hp1 NA19066.hp1 NA19066.hp2 NA19088.hp1 NA19088.hp2 NA20129.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0000 a0001 a0002 a0000 a0001 a0002	a0000c0006 a0001c0001 a0001c0002 others(8): Show a0000c0006 a0001c0001 a0001c0002 a0001c0005 a0001c0007 a0001c0008 a0001c0009 a0001c0011 a0001c0013 a0001c0016 a0002c0012	a0000c0006t0003 a0000c0006t0004 a0000c0006t0006 others(34): Show a0000c0006t0003 a0000c0006t0004 a0000c0006t0006 a0000c0006t0028 a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0027 a0001c0001t0029 a0001c0001t0030 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0002t0001 a0001c0002t0004 a0001c0002t0024 a0001c0002t0025 a0001c0002t0026 a0001c0005t0001 a0001c0005t0004 a0001c0005t0031 a0001c0007t0008 a0001c0007t0022 a0001c0007t0023 a0001c0008t0001 a0001c0009t0008 a0001c0011t0006 a0001c0013t0012 a0001c0016t0001 a0002c0012t0003	a0000c0006t0003g0109 a0000c0006t0004g0095 a0000c0006t0006g0093 others(98): Show a0000c0006t0003g0109 a0000c0006t0004g0095 a0000c0006t0006g0093 a0000c0006t0028g0079 a0001c0001t0001g0066 a0001c0001t0001g0074 a0001c0001t0003g0006 a0001c0001t0003g0107 a0001c0001t0003g0108 a0001c0001t0003g0110 a0001c0001t0003g0111 a0001c0001t0003g0113 a0001c0001t0003g0115 a0001c0001t0003g0118 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0132 a0001c0001t0003g0140 a0001c0001t0003g0141 a0001c0001t0004g0005 a0001c0001t0004g0011 a0001c0001t0004g0080 a0001c0001t0004g0083 a0001c0001t0004g0084 a0001c0001t0004g0085 a0001c0001t0004g0087 a0001c0001t0004g0088 a0001c0001t0004g0089 a0001c0001t0004g0090 a0001c0001t0004g0091 a0001c0001t0006g0051 a0001c0001t0006g0077 a0001c0001t0006g0100 a0001c0001t0006g0101 a0001c0001t0009g0044 a0001c0001t0009g0045 a0001c0001t0009g0082 a0001c0001t0012g0043 a0001c0001t0017g0015 a0001c0001t0019g0031 a0001c0001t0020g0092 a0001c0001t0027g0086 a0001c0001t0029g0124 a0001c0001t0030g0114 a0001c0001t0032g0116 a0001c0001t0033g0112 a0001c0001t0034g0131 a0001c0001t0035g0117 a0001c0002t0001g0001 a0001c0002t0001g0010 a0001c0002t0001g0039 a0001c0002t0001g0041 a0001c0002t0001g0042 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0050 a0001c0002t0001g0052 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0056 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0060 a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0075 a0001c0002t0001g0076 a0001c0002t0001g0081 a0001c0002t0001g0097 a0001c0002t0001g0098 a0001c0002t0001g0099 a0001c0002t0004g0049 a0001c0002t0024g0102 a0001c0002t0025g0096 a0001c0002t0026g0067 a0001c0005t0001g0064 a0001c0005t0001g0065 a0001c0005t0001g0072 a0001c0005t0004g0055 a0001c0005t0004g0059 a0001c0005t0031g0138 a0001c0007t0008g0035 a0001c0007t0008g0037 a0001c0007t0022g0033 a0001c0007t0023g0034 a0001c0008t0001g0009 a0001c0008t0001g0038 a0001c0009t0008g0036 a0001c0011t0006g0073 a0001c0013t0012g0078 a0001c0016t0001g0040 a0002c0012t0003g0119	113	168	0.6726	15	c.229 others(30): Show c.229-578_229-577insCATGGCGATGTGGTC	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	2/5			chr20	TogoVar
CHRNA5_chr15_78560520_78600269	78570424	A A	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02922.hp1 HG03139.hp1 HG02630.hp2 HG02922.hp1 HG03139.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0006 a0001c0001 a0005c0006	a0001c0001t0019 a0005c0006t0018 a0001c0001t0019 a0005c0006t0018	a0001c0001t0019g0138 a0001c0001t0019g0139 a0005c0006t0018g0149 a0001c0001t0019g0138 a0001c0001t0019g0139 a0005c0006t0018g0149	3	382	0.0079	15	c.106 others(32): Show c.106+4610_106+4624dupTTTTTTTTTTTTTTT	CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32070669	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG03540.hp1 NA19240.hp2 HG02897.hp2 HG03540.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0008 a0001c0001 a0001c0004 a0001c0008	a0001c0001t0016 a0001c0004t0009 a0001c0008t0018 a0001c0001t0016 a0001c0004t0009 a0001c0008t0018	a0001c0001t0016g0200 a0001c0004t0009g0197 a0001c0008t0018g0199 a0001c0001t0016g0200 a0001c0004t0009g0197 a0001c0008t0018g0199	3	307	0.0098	15	c.196 others(34): Show c.196-30613_196-30599dupTTTTTTTTTTTTTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32074637	A A	ATATTATT others(8): Show ATATTATTATTATTAT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01891.hp2 HG02965.hp1 others(3): Show HG01255.hp2 HG01891.hp2 HG02965.hp1 HG02976.hp2 HG06807.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0029 a0001c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0029 a0001c0002t0002 a0001c0004t0022 a0001c0004t0041	a0001c0001t0001g0085 a0001c0001t0001g0095 a0001c0001t0029g0206 others(3): Show a0001c0001t0001g0085 a0001c0001t0001g0095 a0001c0001t0029g0206 a0001c0002t0002g0091 a0001c0004t0022g0097 a0001c0004t0041g0037	6	307	0.0195	15	c.196 others(34): Show c.196-26649_196-26635dupATTATTATTATTATT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32098871	A A	ACACACAC others(8): Show ACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0060 a0001c0002t0002g0060	1	307	0.0033	15	c.196 others(32): Show c.196-2432_196-2431insCACACACACACACAC	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9			chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32120417	G G	GTTTTCTT others(8): Show GTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02055.hp2 HG01169.hp1 HG02055.hp2	a0001 a0001	a0001c0006 a0001c0011 a0001c0006 a0001c0011	a0001c0006t0010 a0001c0011t0048 a0001c0006t0010 a0001c0011t0048	a0001c0006t0010g0121 a0001c0011t0048g0119 a0001c0006t0010g0121 a0001c0011t0048g0119	2	307	0.0065	15	c.350 others(32): Show c.350+8533_350+8547dupCTTTTCTTTTCTTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32138731	A A	ATGTTTTG others(8): Show ATGTTTTGTTTTGTTT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00408.hp1 HG00544.hp1 others(53): Show HG00323.hp2 HG00408.hp1 HG00544.hp1 HG00558.hp2 HG00673.hp1 HG00738.hp2 HG00741.hp1 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01099.hp2 HG01106.hp2 HG01109.hp2 HG01346.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01943.hp1 HG02015.hp1 HG02071.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02155.hp2 HG02486.hp2 HG02523.hp2 HG02602.hp1 HG02622.hp2 HG02647.hp2 HG02723.hp2 HG02735.hp2 HG02976.hp1 HG03130.hp1 HG03486.hp1 NA18612.hp1 NA18943.hp1 NA18982.hp1 NA18983.hp2 NA18992.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19006.hp1 NA19006.hp2 NA19056.hp1 NA19060.hp2 NA19062.hp1 NA19068.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19086.hp2 NA19088.hp2 NA19091.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0009 a0001c0011 a0002c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0023 a0001c0001t0027 a0001c0001t0042 a0001c0002t0002 a0001c0002t0005 a0001c0002t0006 a0001c0003t0001 a0001c0004t0003 a0001c0004t0010 a0001c0005t0004 a0001c0006t0002 a0001c0006t0006 a0001c0009t0001 a0001c0011t0026 a0002c0013t0002	a0001c0001t0001g0009 a0001c0001t0001g0031 a0001c0001t0001g0052 others(53): Show a0001c0001t0001g0009 a0001c0001t0001g0031 a0001c0001t0001g0052 a0001c0001t0001g0062 a0001c0001t0001g0092 a0001c0001t0001g0130 a0001c0001t0001g0242 a0001c0001t0001g0302 a0001c0001t0003g0025 a0001c0001t0003g0232 a0001c0001t0008g0157 a0001c0001t0012g0011 a0001c0001t0014g0105 a0001c0001t0015g0216 a0001c0001t0015g0303 a0001c0001t0016g0086 a0001c0001t0016g0201 a0001c0001t0020g0004 a0001c0001t0020g0276 a0001c0001t0023g0162 a0001c0001t0023g0163 a0001c0001t0027g0252 a0001c0001t0042g0280 a0001c0002t0002g0101 a0001c0002t0002g0115 a0001c0002t0002g0140 a0001c0002t0002g0147 a0001c0002t0002g0148 a0001c0002t0002g0245 a0001c0002t0005g0013 a0001c0002t0005g0150 a0001c0002t0006g0016 a0001c0002t0006g0027 a0001c0002t0006g0142 a0001c0003t0001g0007 a0001c0003t0001g0012 a0001c0003t0001g0033 a0001c0003t0001g0098 a0001c0003t0001g0164 a0001c0003t0001g0166 a0001c0003t0001g0258 a0001c0004t0003g0005 a0001c0004t0003g0125 a0001c0004t0003g0277 a0001c0004t0010g0188 a0001c0005t0004g0053 a0001c0005t0004g0056 a0001c0006t0002g0149 a0001c0006t0002g0165 a0001c0006t0002g0168 a0001c0006t0002g0186 a0001c0006t0006g0278 a0001c0009t0001g0127 a0001c0009t0001g0235 a0001c0011t0026g0211 a0002c0013t0002g0045	56	307	0.1824	15	c.351 others(34): Show c.351-15150_351-15136dupTGTTTTGTTTTGTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA9_chr4_40330333_40360217	40341278	T T	TTTTTTTT others(8): Show TTTTTTTTGTTTTTTG	intron_variant intron_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0229 a0002c0003t0001g0229	1	420	0.0024	15	c.365 others(32): Show c.365+3915_365+3929dupTTTTTTTGTTTTTTG	CHRNA9	ENSG00000174343.6	transcript	ENST00000310169.3	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr4	TogoVar
CHRNB3_chr8_42692366_42742407	42717403	A A	AAAAAAAA others(8): Show AAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG03017.hp1 NA18747.hp2 others(1): Show HG01261.hp1 HG03017.hp1 NA18747.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0260 a0001c0001t0001g0265 others(1): Show a0001c0001t0001g0039 a0001c0001t0001g0260 a0001c0001t0001g0265 a0001c0001t0001g0266	4	282	0.0142	15	c.249 others(32): Show c.249+6971_249+6972insAAAAAAAAAAAAGAA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHST11_chr12_104451948_104767014	104475691	T T	TATATATA others(8): Show TATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG02698.hp1 others(1): Show HG00438.hp1 HG00438.hp2 HG02698.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0071	a0001c0001t0001g0046 a0001c0001t0003g0035 a0001c0001t0007g0008 others(1): Show a0001c0001t0001g0046 a0001c0001t0003g0035 a0001c0001t0007g0008 a0001c0001t0071g0174	4	240	0.0167	15	c.118 others(34): Show c.118+18162_118+18163insATATATATATATATA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2			chr12	TogoVar
CHST11_chr12_104451948_104767014	104519105	T T	TGTGTGTG others(8): Show TGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18963.hp1 NA18963.hp2 NA18963.hp1 NA18963.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0022 a0001c0001t0003g0237 a0001c0001t0002g0022 a0001c0001t0003g0237	2	240	0.0083	15	c.118 others(34): Show c.118+61576_118+61577insGTGTGTGTGTGTGTG	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2			chr12	TogoVar
CHST11_chr12_104451948_104767014	104544769	T T	TCCCCCCC others(8): Show TCCCCCCCCCCCCCCC	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG04115.hp2 HG03239.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0228 a0001c0001t0007g0072 a0001c0001t0003g0228 a0001c0001t0007g0072	2	240	0.0083	15	c.119 others(34): Show c.119-57131_119-57130insCCCCCCCCCCCCCCC	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544769	T T	TCCCCCCC others(8): Show TCCCCCCCCGCCCCCC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00558.hp1 HG00735.hp1 others(8): Show HG00140.hp2 HG00558.hp1 HG00735.hp1 HG01169.hp2 HG01255.hp2 HG02698.hp1 HG03710.hp2 HG04228.hp2 NA18941.hp2 NA19002.hp2 NA19077.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0044 a0001c0001t0048 a0002c0002t0002	a0001c0001t0001g0060 a0001c0001t0001g0089 a0001c0001t0001g0112 others(8): Show a0001c0001t0001g0060 a0001c0001t0001g0089 a0001c0001t0001g0112 a0001c0001t0001g0167 a0001c0001t0002g0025 a0001c0001t0003g0016 a0001c0001t0003g0035 a0001c0001t0004g0238 a0001c0001t0044g0184 a0001c0001t0048g0094 a0002c0002t0002g0117	11	240	0.0458	15	c.119 others(34): Show c.119-57131_119-57130insCCGCCCCCCCCCCCC	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104686232	T T	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02109.hp2 HG03491.hp2 others(3): Show HG01496.hp1 HG02109.hp2 HG03491.hp2 HG06807.hp2 NA18942.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0022 a0001c0001t0023	a0001c0001t0001g0045 a0001c0001t0002g0083 a0001c0001t0006g0138 others(3): Show a0001c0001t0001g0045 a0001c0001t0002g0083 a0001c0001t0006g0138 a0001c0001t0006g0236 a0001c0001t0022g0186 a0001c0001t0023g0190	6	240	0.0250	15	c.205 others(34): Show c.205-70714_205-70700dupAAAAAAAAAAAAAAA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104750428	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18964.hp1 NA18987.hp2 others(1): Show NA18948.hp1 NA18964.hp1 NA18987.hp2 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0007 a0001c0001t0001g0020 a0001c0001t0001g0045 others(1): Show a0001c0001t0001g0007 a0001c0001t0001g0020 a0001c0001t0001g0045 a0001c0001t0002g0224	4	240	0.0167	15	c.205 others(32): Show c.205-6507_205-6493dupTTTTTTTTTTTTTTT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104756562	T T	TGTGTGTG others(8): Show TGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0067 a0001c0001t0011g0067	1	240	0.0042	15	c.205 others(30): Show c.205-387_205-386insGTGTGTGTGTGTGTG	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2			chr12	TogoVar
CHST15_chr10_124002668_124098598	124093254	G G	GCCACCGC others(8): Show GCCACCGCCACCGCCA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02559.hp2 HG02622.hp2 others(3): Show HG01109.hp1 HG02559.hp2 HG02622.hp2 HG02717.hp1 HG02965.hp2 HG02976.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0005 a0001c0001 a0001c0003 a0002c0005	a0001c0001t0036 a0001c0001t0037 a0001c0003t0038 others(3): Show a0001c0001t0036 a0001c0001t0037 a0001c0003t0038 a0002c0005t0034 a0002c0005t0035 a0002c0005t0039	a0001c0001t0036g0373 a0001c0001t0037g0374 a0001c0003t0038g0375 others(3): Show a0001c0001t0036g0373 a0001c0001t0037g0374 a0001c0003t0038g0375 a0002c0005t0034g0377 a0002c0005t0035g0378 a0002c0005t0039g0376	6	392	0.0153	15	c.-51 others(32): Show c.-513+200_-513+214dupTGGCGGTGGCGGTGG	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	1/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124096084	A A	AAGAAAAA others(8): Show AAGAAAAAGAAAAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp1 HG02040.hp2 HG02083.hp2 others(16): Show HG01361.hp1 HG02040.hp2 HG02083.hp2 HG02273.hp1 HG02738.hp1 HG03017.hp2 HG03927.hp2 HG04184.hp1 NA18939.hp2 NA18956.hp2 NA18959.hp1 NA18962.hp2 NA18974.hp1 NA18984.hp2 NA18987.hp1 NA18999.hp1 NA19056.hp2 NA19077.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005	a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0300 others(16): Show a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0303 a0001c0001t0001g0310 a0001c0001t0002g0297 a0001c0001t0002g0308 a0001c0001t0003g0307 a0001c0001t0004g0299 a0001c0001t0004g0302 a0001c0001t0004g0304 a0001c0001t0004g0305 a0001c0001t0004g0306 a0001c0001t0004g0309 a0001c0001t0005g0295 a0001c0001t0005g0311 a0001c0001t0005g0312 a0001c0001t0005g0313	19	392	0.0485	15	c.-31 others(26): Show c.-3129_-3128insCTTTTTTCTTTTTCT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding		2487		chr10	TogoVar
CHST3_chr10_71959395_72018558	72017812	C C	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19004.hp2 NA19060.hp2 NA19004.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0039 a0001c0001t0002g0040	2	372	0.0054	15	c.93 others(26): Show c.9341_*9342insTTTTTTTTTTTTTTT	CHST3	ENSG00000122863.6	transcript	ENST00000373115.5	protein_coding		4255		chr10	TogoVar
CHST6_chr16_75467052_75500441	75491186	A A	ATATATAT others(8): Show ATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0088 a0001c0001t0051g0088	1	371	0.0027	15	c.-92 others(32): Show c.-92+3753_-92+3754insATATATATATATATA	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST6_chr16_75467052_75500441	75491190	A A	AAAAAAAA others(8): Show AAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0192 a0001c0001t0004g0192	1	371	0.0027	15	c.-92 others(32): Show c.-92+3749_-92+3750insATATATATTTTTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST6_chr16_75467052_75500441	75491190	A A	AAAAAAAT others(8): Show AAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0196 a0001c0001t0003g0196	1	371	0.0027	15	c.-92 others(32): Show c.-92+3749_-92+3750insATATATATATTTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST6_chr16_75467052_75500441	75491190	A A	AAAAATAT others(8): Show AAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01934.hp1 HG03041.hp2 others(1): Show HG01891.hp2 HG01934.hp1 HG03041.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 others(1): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010	a0001c0001t0002g0048 a0001c0001t0005g0049 a0001c0001t0006g0028 others(1): Show a0001c0001t0002g0048 a0001c0001t0005g0049 a0001c0001t0006g0028 a0001c0001t0010g0047	4	371	0.0108	15	c.-92 others(32): Show c.-92+3749_-92+3750insATATATATATATTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST8_chr19_33616953_33778506	33618625	T T	TCTCTTCT others(8): Show TCTCTTCTTCTTCTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01109.hp1 HG02132.hp2 others(6): Show HG00735.hp2 HG01109.hp1 HG02132.hp2 HG02818.hp2 HG02976.hp1 HG03239.hp2 HG03453.hp1 HG03471.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0012 a0001c0001t0001 a0001c0001t0006 a0001c0001t0012	a0001c0001t0001g0180 a0001c0001t0001g0183 a0001c0001t0001g0195 others(6): Show a0001c0001t0001g0180 a0001c0001t0001g0183 a0001c0001t0001g0195 a0001c0001t0001g0199 a0001c0001t0001g0204 a0001c0001t0001g0213 a0001c0001t0001g0242 a0001c0001t0006g0185 a0001c0001t0012g0192	9	254	0.0354	15	c.-38 others(26): Show c.-3835_-3834insCTCTTCTTCTTCTTC	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding		3327		chr19	TogoVar
CHST8_chr19_33616953_33778506	33618626	C C	CTCTTCTT others(8): Show CTCTTCTTCTTCTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG01071.hp2 HG01255.hp2 others(16): Show HG00609.hp2 HG01071.hp2 HG01255.hp2 HG01358.hp1 HG01975.hp2 HG02083.hp2 HG02135.hp2 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG03130.hp2 HG03471.hp2 HG03492.hp2 HG04184.hp1 HG06807.hp2 NA18522.hp2 NA18962.hp2 NA18983.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0003	a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0032 others(16): Show a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0130 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0151 a0001c0001t0002g0036 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0061 a0001c0001t0002g0175 a0001c0002t0001g0034 a0001c0003t0003g0029	19	254	0.0748	15	c.-38 others(26): Show c.-3834_-3833insTCTTCTTCTTCTTCT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding		3326		chr19	TogoVar

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