Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNOT6_chr5_180489379_180583358	180538713	T T	TATATATA others(9): Show TATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0002 a0001c0001t0060g0002	1	334	0.0030	16	c.112 others(33): Show c.112+9328_112+9329insTATATATATATACATA	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180561356	T T	TTGTGTGT others(9): Show TTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18941.hp2 NA18991.hp1 NA19070.hp1 NA18941.hp2 NA18991.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0052 a0001c0001t0002 a0001c0001t0052	a0001c0001t0002g0079 a0001c0001t0002g0110 a0001c0001t0052g0080 a0001c0001t0002g0079 a0001c0001t0002g0110 a0001c0001t0052g0080	3	334	0.0090	16	c.386 others(33): Show c.386-3111_386-3096dupGTGTGTGTGTGTGTGT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180577163	A A	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02074.hp1 HG02109.hp2 NA18612.hp1 others(3): Show HG02074.hp1 HG02109.hp2 NA18612.hp1 NA18612.hp2 NA19070.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0028 a0001c0001t0035 a0001c0001t0023 a0001c0001t0028 a0001c0001t0035	a0001c0001t0023g0009 a0001c0001t0023g0196 a0001c0001t0023g0203 others(3): Show a0001c0001t0023g0009 a0001c0001t0023g0196 a0001c0001t0023g0203 a0001c0001t0028g0233 a0001c0001t0028g0327 a0001c0001t0035g0017	6	334	0.0180	16	c.29 others(27): Show c.2981_*2996dupGTGTGTGTGTGTGTGT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	12/12	2997	INFO_REALIGN_3_PRIME	chr5	TogoVar
CNPY1_chr7_155496129_155551559	155504689	A A	AACACACA others(9): Show AACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0017 a0001c0002t0017	a0001c0002t0017g0418 a0001c0002t0017g0418	1	426	0.0024	16	c.401 others(33): Show c.401-1600_401-1585dupGTGTGTGTGTGTGTGT	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	4/4			chr7	TogoVar
CNPY1_chr7_155496129_155551559	155507471	T T	TAAAAAAA others(9): Show TAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02055.hp1 HG03098.hp2 HG01243.hp1 HG02055.hp1 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0014 a0001c0001t0048 a0001c0002t0017 a0001c0001t0014 a0001c0001t0048 a0001c0002t0017	a0001c0001t0014g0024 a0001c0001t0048g0378 a0001c0002t0017g0418 a0001c0001t0014g0024 a0001c0001t0048g0378 a0001c0002t0017g0418	3	426	0.0070	16	c.304 others(31): Show c.304-371_304-356dupTTTTTTTTTTTTTTTT	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	3/4			chr7	TogoVar
CNPY1_chr7_155496129_155551559	155527030	T T	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01106.hp1 HG02071.hp2 others(6): Show HG00609.hp1 HG01106.hp1 HG02071.hp2 NA18946.hp1 NA18979.hp2 NA18983.hp2 NA18985.hp2 NA19068.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0002t0005 a0001c0004t0029	a0001c0001t0001g0129 a0001c0001t0002g0132 a0001c0001t0002g0164 others(6): Show a0001c0001t0001g0129 a0001c0001t0002g0132 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0002t0003g0344 a0001c0002t0005g0310 a0001c0002t0005g0356 a0001c0004t0029g0358	9	426	0.0211	16	c.100 others(35): Show c.100-17949_100-17934dupGAAAGAAAGAAAGAAA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNPY1_chr7_155496129_155551559	155527054	C C	CTTTCTTT others(9): Show CTTTCTTTCTTTCTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02896.hp2 HG02922.hp2 others(9): Show HG02886.hp1 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03209.hp1 NA18954.hp2 NA19030.hp1 NA20129.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0010 a0001c0001t0026 a0001c0001t0028 others(5): Show a0001c0001t0010 a0001c0001t0026 a0001c0001t0028 a0001c0001t0032 a0001c0001t0033 a0001c0003t0009 a0001c0003t0022 a0001c0004t0030	a0001c0001t0010g0262 a0001c0001t0010g0263 a0001c0001t0026g0096 others(9): Show a0001c0001t0010g0262 a0001c0001t0010g0263 a0001c0001t0026g0096 a0001c0001t0026g0265 a0001c0001t0028g0393 a0001c0001t0032g0075 a0001c0001t0033g0086 a0001c0001t0033g0089 a0001c0003t0009g0130 a0001c0003t0022g0074 a0001c0003t0022g0080 a0001c0004t0030g0010	12	426	0.0282	16	c.100 others(35): Show c.100-17958_100-17957insAAAAGAAAGAAAGAAA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNPY4_chr7_100114634_100130508	100121090	T T	TTATATAT others(9): Show TTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0092 a0003c0003t0001g0092	1	416	0.0024	16	c.119 others(33): Show c.119-1157_119-1142dupATATATATATATATAT	CNPY4	ENSG00000166997.8	transcript	ENST00000262932.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNR2_chr1_23865515_23918362	23891275	T T	TTGTGTGT others(9): Show TTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0009 a0003c0003t0009	a0003c0003t0009g0200 a0003c0003t0009g0200	1	268	0.0037	16	c.-45 others(35): Show c.-45-15629_-45-15614dupCACACACACACACACA	CNR2	ENSG00000188822.8	transcript	ENST00000374472.5	protein_coding	1/1			chr1	TogoVar
CNR2_chr1_23865515_23918362	23899257	C C	CAGACCCT others(9): Show CAGACCCTGACCACAGA	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0093 a0001c0001t0001g0093	1	268	0.0037	16	c.-46 others(35): Show c.-46+13973_-46+13988dupTCTGTGGTCAGGGTCT	CNR2	ENSG00000188822.8	transcript	ENST00000374472.5	protein_coding	1/1			chr1	TogoVar
CNR2_chr1_23865515_23918362	23914062	C C	CGTGTGTG others(9): Show CGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0256 a0001c0001t0006g0256	1	268	0.0037	16	c.-86 others(25): Show c.-863_-862insACACACACACACACAC	CNR2	ENSG00000188822.8	transcript	ENST00000374472.5	protein_coding		701		chr1	TogoVar
CNRIP1_chr2_68288010_68324949	68306124	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0198 a0001c0001t0001g0198	1	424	0.0024	16	c.330 others(35): Show c.330+11017_330+11032dupTTTTTTTTTTTTTTTT	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246574972	T T	TTTTATTT others(9): Show TTTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG02040.hp2 NA20300.hp2 HG02040.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0207 a0001c0001t0011g0208 a0001c0001t0001g0207 a0001c0001t0011g0208	2	320	0.0063	16	c.-52 others(33): Show c.-52+8333_-52+8348dupATTTATTTATTTATTT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246586111	A A	ATATATGT others(9): Show ATATATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01891.hp2 HG02257.hp2 others(2): Show HG00733.hp1 HG01891.hp2 HG02257.hp2 HG02723.hp1 HG03130.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0038 a0003c0003t0001g0039 a0003c0003t0001g0040 others(2): Show a0003c0003t0001g0038 a0003c0003t0001g0039 a0003c0003t0001g0040 a0003c0003t0001g0041 a0003c0003t0001g0044	5	320	0.0156	16	c.-51 others(33): Show c.-51-5400_-51-5399insATATGTGTGTGTGTGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246586111	A A	ATATGTGT others(9): Show ATATGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0030 a0002c0002t0006g0030	1	320	0.0031	16	c.-51 others(33): Show c.-51-5400_-51-5399insATGTGTGTGTGTGTGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246642132	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02615.hp2 HG02809.hp1 others(2): Show HG02145.hp2 HG02615.hp2 HG02809.hp1 HG02886.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0167 a0001c0001t0002g0172 a0001c0001t0002g0175 others(2): Show a0001c0001t0001g0167 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0003g0181 a0001c0001t0004g0173	5	320	0.0156	16	c.937 others(29): Show c.937+95_937+96insTTTTTTTTTTTTTTTT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	8/10			chr1	TogoVar
CNTFR_chr9_34546433_34594724	34555883	G G	GCCCGCCA others(9): Show GCCCGCCATCTCCCTCC	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0086	1	402	0.0025	16	c.768 others(31): Show c.768+356_768+371dupGGAGGGAGATGGCGGG	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding	7/9			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17185771	T T	TTGTGTGT others(9): Show TTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01069.hp2 HG01071.hp1 others(7): Show HG00140.hp1 HG01069.hp2 HG01071.hp1 HG01975.hp2 HG02602.hp2 NA18984.hp1 NA19057.hp1 NA19065.hp2 NA19079.hp2 NA19087.hp2	a0002 a0005 a0014 a0002 a0005 a0014	a0002c0006 a0005c0005 a0005c0036 others(1): Show a0002c0006 a0005c0005 a0005c0036 a0014c0035	a0002c0006t0001 a0005c0005t0001 a0005c0005t0002 others(3): Show a0002c0006t0001 a0005c0005t0001 a0005c0005t0002 a0005c0005t0010 a0005c0036t0001 a0014c0035t0001	a0002c0006t0001g0031 a0005c0005t0001g0094 a0005c0005t0001g0095 others(7): Show a0002c0006t0001g0031 a0005c0005t0001g0094 a0005c0005t0001g0095 a0005c0005t0001g0096 a0005c0005t0001g0101 a0005c0005t0002g0103 a0005c0005t0010g0098 a0005c0005t0010g0099 a0005c0036t0001g0100 a0014c0035t0001g0104	10	218	0.0459	16	c.450 others(35): Show c.450-40416_450-40401dupGTGTGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17202646	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0017 a0017	a0017c0044 a0017c0044	a0017c0044t0001 a0017c0044t0001	a0017c0044t0001g0060 a0017c0044t0001g0060	1	218	0.0046	16	c.450 others(35): Show c.450-23548_450-23533dupTTTTTTTTTTTTTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17274457	C C	CTATCTAT others(9): Show CTATCTATCTGTCTATG	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19065.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0096 a0005c0005t0001g0096	1	218	0.0046	16	c.983 others(31): Show c.983+600_983+601insGTCTATGTATCTATCT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17295969	T T	TGAGAGAG others(9): Show TGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0002 a0006c0007t0002	a0006c0007t0002g0079 a0006c0007t0002g0079	1	218	0.0046	16	c.984 others(33): Show c.984-2207_984-2192dupAGAGAGAGAGAGAGAG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATTAT others(9): Show TATATTATATATATATA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02132.hp2 NA19003.hp1 HG00597.hp2 HG02132.hp2 NA19003.hp1	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0001	a0004c0003t0001g0136 a0004c0003t0001g0139 a0004c0003t0001g0178 a0004c0003t0001g0136 a0004c0003t0001g0139 a0004c0003t0001g0178	3	218	0.0138	16	c.134 others(35): Show c.1341+3112_1341+3113insATATTATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17337189	C C	CTTGTAGA others(9): Show CTTGTAGATTCTGGATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02970.hp1 HG01243.hp1 HG02970.hp1	a0004 a0019 a0004 a0019	a0004c0003 a0019c0040 a0004c0003 a0019c0040	a0004c0003t0002 a0019c0040t0002 a0004c0003t0002 a0019c0040t0002	a0004c0003t0002g0148 a0019c0040t0002g0147 a0004c0003t0002g0148 a0019c0040t0002g0147	2	218	0.0092	16	c.164 others(35): Show c.1645-3635_1645-3620dupGTAGATTCTGGATATT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	10/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17338125	T T	TTTCCTTC others(9): Show TTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0001	a0004c0003t0001g0135 a0004c0003t0001g0135	1	218	0.0046	16	c.164 others(35): Show c.1645-2694_1645-2679dupCTTCCTTCCTTCCTTC	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	10/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17469775	C C	CCTTTCTC others(9): Show CCTTTCTCTGTCATGAA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02257.hp2 HG02258.hp1 others(18): Show HG01074.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02572.hp1 HG02622.hp2 HG02630.hp2 HG02723.hp1 HG02809.hp1 HG02886.hp1 HG02922.hp1 HG02965.hp2 HG03041.hp2 HG03209.hp1 HG03471.hp1 HG03516.hp2 HG03579.hp2 NA18522.hp1 NA18522.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0006 a0007 a0010 a0020	a0001c0001 a0001c0004 a0001c0014 others(13): Show a0001c0001 a0001c0004 a0001c0014 a0001c0027 a0001c0028 a0001c0030 a0001c0055 a0002c0006 a0002c0013 a0003c0002 a0004c0003 a0006c0007 a0007c0011 a0007c0049 a0010c0012 a0020c0041	a0001c0001t0005 a0001c0004t0002 a0001c0014t0002 others(15): Show a0001c0001t0005 a0001c0004t0002 a0001c0014t0002 a0001c0027t0004 a0001c0028t0004 a0001c0030t0002 a0001c0055t0001 a0002c0006t0002 a0002c0013t0002 a0003c0002t0001 a0004c0003t0001 a0006c0007t0002 a0007c0011t0002 a0007c0011t0003 a0007c0011t0004 a0007c0049t0004 a0010c0012t0003 a0020c0041t0001	a0001c0001t0005g0133 a0001c0004t0002g0002 a0001c0014t0002g0161 others(18): Show a0001c0001t0005g0133 a0001c0004t0002g0002 a0001c0014t0002g0161 a0001c0014t0002g0162 a0001c0027t0004g0155 a0001c0028t0004g0028 a0001c0030t0002g0048 a0001c0055t0001g0021 a0002c0006t0002g0105 a0002c0013t0002g0209 a0002c0013t0002g0210 a0003c0002t0001g0211 a0004c0003t0001g0189 a0006c0007t0002g0195 a0007c0011t0002g0109 a0007c0011t0003g0114 a0007c0011t0004g0110 a0007c0011t0004g0113 a0007c0049t0004g0116 a0010c0012t0003g0025 a0020c0041t0001g0106	21	218	0.0963	16	c.385 others(35): Show c.3855+2885_3855+2900dupCTTTCTCTGTCATGAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	23/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40707227	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG03209.hp2 NA19030.hp2 HG02559.hp1 HG03209.hp2 NA19030.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0007 a0001c0004t0001 a0001c0004t0007	a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214 a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214	3	230	0.0130	16	c.-77 others(35): Show c.-77+14659_-77+14674dupTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40747305	A A	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	230	0.0044	16	c.-77 others(35): Show c.-77+54725_-77+54740dupGTGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40822148	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0117 a0001c0002t0004g0117	1	230	0.0044	16	c.-76 others(35): Show c.-76-86200_-76-86185dupTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40863922	T T	TCCTTCCT others(9): Show TCCTTCCTTCCTTCCTC	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0117 a0001c0002t0004g0117	1	230	0.0044	16	c.-76 others(35): Show c.-76-44428_-76-44427insTCCTTCCTCCCTTCCT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40863926	T T	TCCTCCCT others(9): Show TCCTCCCTCCCTCCCTC	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0226 a0001c0003t0016g0226	1	230	0.0044	16	c.-76 others(35): Show c.-76-44418_-76-44403dupCCTCCCTCCCTCCCTC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40863926	T T	TCCTTCCT others(9): Show TCCTTCCTTCCTCCCTC	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02109.hp1 HG03579.hp1 HG01167.hp1 HG02109.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0003 a0001c0001t0001 a0001c0002t0003	a0001c0001t0001g0063 a0001c0001t0001g0212 a0001c0002t0003g0060 a0001c0001t0001g0063 a0001c0001t0001g0212 a0001c0002t0003g0060	3	230	0.0130	16	c.-76 others(35): Show c.-76-44428_-76-44427insTCCTTCCTCCCTCCCT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40924881	C C	CATATATA others(9): Show CATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG03516.hp1 others(1): Show HG01167.hp2 HG01169.hp2 HG03516.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0002t0001 a0001c0005t0025 a0001c0001t0001 a0001c0002t0001 a0001c0005t0025	a0001c0001t0001g0095 a0001c0002t0001g0195 a0001c0002t0001g0196 others(1): Show a0001c0001t0001g0095 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0005t0025g0052	4	230	0.0174	16	c.496 others(31): Show c.496+231_496+246dupTATATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40926171	G G	GGATAGAT others(9): Show GGATAGATAGATAGATA	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02257.hp1 NA18974.hp1 others(2): Show HG01167.hp1 HG02257.hp1 NA18974.hp1 NA18989.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0001t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0001g0212 a0001c0001t0004g0225 a0001c0002t0001g0092 others(2): Show a0001c0001t0001g0212 a0001c0001t0004g0225 a0001c0002t0001g0092 a0001c0002t0001g0109 a0001c0002t0001g0164	5	230	0.0217	16	c.496 others(33): Show c.496+1556_496+1571dupGATAGATAGATAGATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40957592	A A	AAAATAAA others(9): Show AAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01884.hp1 HG02055.hp2 others(15): Show HG01346.hp2 HG01884.hp1 HG02055.hp2 HG02257.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02572.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18952.hp2 NA18953.hp1 NA18964.hp2 NA18972.hp2 NA19091.hp1 NA19240.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0014 a0001c0001t0015 a0001c0003t0005	a0001c0001t0001g0223 a0001c0001t0003g0084 a0001c0001t0003g0154 others(15): Show a0001c0001t0001g0223 a0001c0001t0003g0084 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0004g0054 a0001c0001t0004g0115 a0001c0001t0004g0170 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0006g0140 a0001c0001t0007g0055 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0003t0005g0082 a0001c0003t0005g0155 a0001c0003t0005g0191 a0001c0003t0005g0193	18	230	0.0783	16	c.168 others(35): Show c.1684-1503_1684-1488dupATAAATAAATAAATAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	T T	TTATATAT others(9): Show TTATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18973.hp2 NA18973.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0145 a0001c0002t0001g0145	1	230	0.0044	16	c.180 others(35): Show c.1805-5701_1805-5686dupATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	A A	AATATATA others(9): Show AATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01884.hp1 HG02027.hp1 others(9): Show HG01255.hp1 HG01884.hp1 HG02027.hp1 HG02300.hp1 HG02615.hp2 HG03130.hp1 HG03927.hp1 NA18522.hp1 NA18957.hp1 NA18972.hp2 NA19012.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 a0001c0001 a0001c0003 a0001c0006	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0003t0002 a0001c0003t0005 a0001c0006t0006	a0001c0001t0002g0045 a0001c0001t0002g0130 a0001c0001t0002g0159 others(9): Show a0001c0001t0002g0045 a0001c0001t0002g0130 a0001c0001t0002g0159 a0001c0001t0003g0166 a0001c0001t0003g0222 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0007g0058 a0001c0001t0009g0182 a0001c0003t0002g0128 a0001c0003t0005g0191 a0001c0006t0006g0021	12	230	0.0522	16	c.298 others(37): Show c.2981-16506_2981-16491dupATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075705	T T	TGAAGGAA others(9): Show TGAAGGAAGGAAGGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG01074.hp2 HG01515.hp1 others(5): Show HG00741.hp1 HG01074.hp2 HG01515.hp1 HG01981.hp2 HG02572.hp2 NA18944.hp2 NA18953.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0002 a0001c0002t0002 a0001c0003t0016 others(1): Show a0001c0001t0002 a0001c0002t0002 a0001c0003t0016 a0001c0005t0002	a0001c0001t0002g0069 a0001c0001t0002g0094 a0001c0001t0002g0110 others(5): Show a0001c0001t0002g0069 a0001c0001t0002g0094 a0001c0001t0002g0110 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0002t0002g0221 a0001c0003t0016g0226 a0001c0005t0002g0210	8	230	0.0348	16	c.56 others(27): Show c.5670_*5671insGAAGGAAGGAAGGAAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3291		chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075740	A A	AGGAAGGA others(9): Show AGGAAGGAAGGAAGGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG02615.hp2 NA18989.hp2 HG01884.hp1 HG02615.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0029 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0004g0029 a0001c0001t0004g0073 a0001c0001t0004g0170	3	230	0.0130	16	c.57 others(27): Show c.5705_*5706insGGAAGGAAGGAAGGAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3326		chr12	TogoVar
CNTN3_chr3_74257568_74619659	74366778	G G	GTATATAT others(9): Show GTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02895.hp2 HG02896.hp1 others(1): Show HG02004.hp2 HG02895.hp2 HG02896.hp1 HG03098.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0008 a0002c0005 a0001c0001 a0001c0008 a0002c0005	a0001c0001t0003 a0001c0008t0002 a0002c0005t0002 others(1): Show a0001c0001t0003 a0001c0008t0002 a0002c0005t0002 a0002c0005t0023	a0001c0001t0003g0049 a0001c0008t0002g0068 a0002c0005t0002g0037 others(1): Show a0001c0001t0003g0049 a0001c0008t0002g0068 a0002c0005t0002g0037 a0002c0005t0023g0032	4	174	0.0230	16	c.947 others(33): Show c.947-1077_947-1076insTATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTATATAT others(9): Show GTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00408.hp2 HG00438.hp2 others(24): Show HG00323.hp2 HG00408.hp2 HG00438.hp2 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01261.hp1 HG01261.hp2 HG01943.hp2 HG02027.hp1 HG02055.hp2 HG02155.hp2 HG02559.hp1 HG02647.hp1 HG02809.hp2 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 NA18906.hp1 NA18981.hp1 NA19030.hp2 NA19074.hp1 NA19074.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0002c0004 a0003c0003 a0003c0021	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0011 a0001c0001t0027 a0001c0002t0002 a0001c0002t0007 a0001c0002t0014 a0001c0006t0006 a0002c0004t0006 a0002c0004t0028 a0003c0003t0002 a0003c0003t0003 a0003c0021t0003	a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0118 others(24): Show a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0118 a0001c0001t0001g0139 a0001c0001t0002g0046 a0001c0001t0003g0017 a0001c0001t0003g0024 a0001c0001t0003g0067 a0001c0001t0004g0098 a0001c0001t0005g0156 a0001c0001t0005g0169 a0001c0001t0006g0144 a0001c0001t0011g0009 a0001c0001t0027g0094 a0001c0002t0002g0021 a0001c0002t0002g0022 a0001c0002t0007g0018 a0001c0002t0014g0076 a0001c0006t0006g0150 a0002c0004t0006g0145 a0002c0004t0028g0137 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0002g0078 a0003c0003t0003g0077 a0003c0021t0003g0048	27	174	0.1552	16	c.947 others(33): Show c.947-1094_947-1079dupTATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTATAT others(9): Show GTGTATATATATATATA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp2 HG01255.hp2 others(7): Show HG00597.hp1 HG00597.hp2 HG01255.hp2 HG02055.hp1 HG02109.hp2 HG02132.hp1 HG03041.hp2 NA18956.hp2 NA18959.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0003 a0001c0001 a0001c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0015 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0017 a0003c0003t0002	a0001c0001t0001g0134 a0001c0001t0001g0140 a0001c0001t0002g0083 others(7): Show a0001c0001t0001g0134 a0001c0001t0001g0140 a0001c0001t0002g0083 a0001c0001t0004g0136 a0001c0001t0015g0014 a0001c0002t0002g0056 a0001c0002t0004g0123 a0001c0002t0005g0146 a0001c0002t0017g0170 a0003c0003t0002g0079	10	174	0.0575	16	c.947 others(33): Show c.947-1079_947-1078insTATATATATATATACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74391557	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0002 a0003c0007t0002	a0003c0007t0002g0041 a0003c0007t0002g0041	1	174	0.0058	16	c.455 others(35): Show c.455-20174_455-20159dupAAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	5/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74575606	A A	AACACACA others(9): Show AACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01346.hp1 HG01952.hp1 others(5): Show HG01261.hp2 HG01346.hp1 HG01952.hp1 HG02647.hp1 HG03579.hp1 HG04184.hp1 HG04184.hp2 NA18981.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0009 others(2): Show a0001c0001 a0001c0002 a0001c0009 a0002c0004 a0002c0005	a0001c0001t0001 a0001c0001t0004 a0001c0001t0011 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0011 a0001c0002t0001 a0001c0009t0004 a0002c0004t0028 a0002c0005t0002	a0001c0001t0001g0099 a0001c0001t0001g0118 a0001c0001t0004g0092 others(5): Show a0001c0001t0001g0099 a0001c0001t0001g0118 a0001c0001t0004g0092 a0001c0001t0011g0009 a0001c0002t0001g0091 a0001c0009t0004g0103 a0002c0004t0028g0137 a0002c0005t0002g0043	8	174	0.0460	16	c.-81 others(35): Show c.-81+38769_-81+38784dupGTGTGTGTGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2125894	G G	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0080 a0001c0002t0007g0080	1	116	0.0086	16	c.-14 others(37): Show c.-145+25274_-145+25289dupGTGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(9): Show TATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0023 a0001c0023	a0001c0023t0004 a0001c0023t0004	a0001c0023t0004g0041 a0001c0023t0004g0041	1	116	0.0086	16	c.-89 others(33): Show c.-89+1478_-89+1479insTATATAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400418	T T	TATATATA others(9): Show TATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0006	a0001c0003t0006g0040 a0001c0003t0006g0040	1	116	0.0086	16	c.-89 others(35): Show c.-89+61194_-89+61195insTATATACATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481033	T T	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01884.hp1 HG02486.hp1 others(5): Show HG00735.hp2 HG01884.hp1 HG02486.hp1 HG02523.hp2 HG02602.hp2 HG02622.hp1 HG02886.hp1 HG03130.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0005 others(5): Show a0001c0001 a0001c0004 a0001c0005 a0001c0007 a0001c0009 a0001c0025 a0002c0014 a0002c0016	a0001c0001t0003 a0001c0004t0002 a0001c0005t0009 others(5): Show a0001c0001t0003 a0001c0004t0002 a0001c0005t0009 a0001c0007t0004 a0001c0009t0014 a0001c0025t0001 a0002c0014t0001 a0002c0016t0003	a0001c0001t0003g0008 a0001c0004t0002g0076 a0001c0005t0009g0091 others(5): Show a0001c0001t0003g0008 a0001c0004t0002g0076 a0001c0005t0009g0091 a0001c0007t0004g0066 a0001c0009t0014g0039 a0001c0025t0001g0100 a0002c0014t0001g0016 a0002c0016t0003g0079	8	116	0.0690	16	c.-88 others(35): Show c.-88-90369_-88-90354dupTTCTTTCTTTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2520259	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0002 a0002	a0002c0016 a0002c0016	a0002c0016t0003 a0002c0016t0003	a0002c0016t0003g0079 a0002c0016t0003g0079	1	116	0.0086	16	c.-88 others(35): Show c.-88-51141_-88-51126dupTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2607610	C C	CCACACAC others(9): Show CCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02258.hp2 HG03130.hp2 HG01884.hp2 HG02258.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0009 a0001c0002t0001 a0001c0007t0003 a0001c0001t0009 a0001c0002t0001 a0001c0007t0003	a0001c0001t0009g0052 a0001c0002t0001g0108 a0001c0007t0003g0034 a0001c0001t0009g0052 a0001c0002t0001g0108 a0001c0007t0003g0034	3	116	0.0259	16	c.55+ others(33): Show c.55+36053_55+36068dupCACACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2677129	T T	TTAGATAG others(9): Show TTAGATAGATAGATAGA	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0106 a0001c0004t0001g0106	1	116	0.0086	16	c.56- others(33): Show c.56-59056_56-59041dupAGATAGATAGATAGAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar

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