Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CRKL_chr22_20912407_20958747	20927128	A A	AAAAAAAA others(9): Show AAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG02630.hp1 HG03041.hp2 others(4): Show HG01256.hp2 HG02630.hp1 HG03041.hp2 NA18989.hp1 NA19089.hp2 NA20905.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0128 a0001c0001t0001g0250 a0001c0001t0001g0255 others(4): Show a0001c0001t0001g0128 a0001c0001t0001g0250 a0001c0001t0001g0255 a0001c0001t0001g0311 a0001c0001t0001g0316 a0001c0001t0001g0317 a0001c0001t0008g0290	7	370	0.0189	16	c.312 others(33): Show c.312-6643_312-6642insAAAAAAAGAAAAAAAA	CRKL	ENSG00000099942.13	transcript	ENST00000354336.8	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr22	TogoVar
CRKL_chr22_20912407_20958747	20927129	A A	AAAAAAAA others(9): Show AAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0331 a0001c0001t0001g0331	1	370	0.0027	16	c.312 others(33): Show c.312-6643_312-6642insAAAAAAAAGAAAAAAA	CRKL	ENSG00000099942.13	transcript	ENST00000354336.8	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr22	TogoVar
CRKL_chr22_20912407_20958747	20927132	A A	AAAAAAAA others(9): Show AAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0301 a0001c0001t0001g0301	1	370	0.0027	16	c.312 others(33): Show c.312-6643_312-6642insAAAAAAAAAAAGAAAA	CRKL	ENSG00000099942.13	transcript	ENST00000354336.8	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr22	TogoVar
CRKL_chr22_20912407_20958747	20927192	A A	ATTTTTTT others(9): Show ATTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02015.hp2 NA18747.hp1 HG02015.hp2 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0062 a0001c0001t0007g0063 a0001c0001t0007g0062 a0001c0001t0007g0063	2	370	0.0054	16	c.312 others(33): Show c.312-6584_312-6569dupTTTTTTTTTTTTTTTT	CRKL	ENSG00000099942.13	transcript	ENST00000354336.8	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr22	TogoVar
CRK_chr17_1415693_1461232	1427030	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0036 a0001c0002t0001g0036	1	404	0.0025	16	c.778 others(33): Show c.778-3396_778-3381dupTTTTTTTTTTTTTTTT	CRK	ENSG00000167193.8	transcript	ENST00000300574.3	protein_coding	2/2			chr17	TogoVar
CRLF2_chrX_1185490_1217649	1189191	A A	ATAGTGTG others(9): Show ATAGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp1 HG03492.hp2 HG01496.hp1 HG03492.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0006 a0001c0001 a0002c0006	a0001c0001t0001 a0002c0006t0001 a0001c0001t0001 a0002c0006t0001	a0001c0001t0001g0114 a0002c0006t0001g0097 a0001c0001t0001g0114 a0002c0006t0001g0097	2	167	0.0120	16	c.17 others(27): Show c.1705_*1706insACACACACACACACTA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding		1298		chrX	TogoVar
CRLF2_chrX_1185490_1217649	1189196	G G	GTGTGTGT others(9): Show GTGTGTGTGTATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp1 HG02615.hp1 HG02451.hp1 HG02615.hp1	a0002 a0002	a0002c0005 a0002c0015 a0002c0005 a0002c0015	a0002c0005t0002 a0002c0015t0002 a0002c0005t0002 a0002c0015t0002	a0002c0005t0002g0013 a0002c0015t0002g0012 a0002c0005t0002g0013 a0002c0015t0002g0012	2	167	0.0120	16	c.17 others(27): Show c.1700_*1701insTATATATACACACACA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding		1293		chrX	TogoVar
CRLF2_chrX_1185490_1217649	1189196	G G	GTGTGTGT others(9): Show GTGTGTGTGTGTGTATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0079 a0001c0001t0006g0079	1	167	0.0060	16	c.17 others(27): Show c.1700_*1701insTATACACACACACACA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding		1293		chrX	TogoVar
CRLF2_chrX_1185490_1217649	1189213	G G	GTGTGTAT others(9): Show GTGTGTATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0059 a0001c0002t0002g0059	1	167	0.0060	16	c.16 others(27): Show c.1683_*1684insTATATATATATACACA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding		1276		chrX	TogoVar
CRLF2_chrX_1185490_1217649	1191295	C C	CTCTTTCT others(9): Show CTCTTTCTTTCCTTCTT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG02922.hp2 others(6): Show HG00408.hp1 HG00408.hp2 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03492.hp2 HG03516.hp1 HG03704.hp2 NA18995.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0002 a0002c0006 a0002c0013 others(2): Show a0001c0002 a0002c0006 a0002c0013 a0002c0015 a0005c0038	a0001c0002t0002 a0002c0006t0001 a0002c0013t0002 others(2): Show a0001c0002t0002 a0002c0006t0001 a0002c0013t0002 a0002c0015t0001 a0005c0038t0002	a0001c0002t0002g0014 a0001c0002t0002g0048 a0001c0002t0002g0070 others(6): Show a0001c0002t0002g0014 a0001c0002t0002g0048 a0001c0002t0002g0070 a0001c0002t0002g0071 a0001c0002t0002g0096 a0002c0006t0001g0097 a0002c0013t0002g0146 a0002c0015t0001g0099 a0005c0038t0002g0148	9	167	0.0539	16	c.853 others(31): Show c.853-136_853-135insAAGAAGGAAAGAAAGA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1191295	C C	CTCTTTCT others(9): Show CTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00423.hp2 HG00609.hp1 others(6): Show HG00323.hp1 HG00423.hp2 HG00609.hp1 HG01070.hp1 HG01071.hp2 HG02630.hp1 HG02683.hp1 HG03834.hp1 NA18983.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0001c0007 a0002c0004 others(2): Show a0001c0003 a0001c0007 a0002c0004 a0002c0010 a0002c0039	a0001c0003t0001 a0001c0007t0001 a0002c0004t0001 others(2): Show a0001c0003t0001 a0001c0007t0001 a0002c0004t0001 a0002c0010t0001 a0002c0039t0001	a0001c0003t0001g0098 a0001c0007t0001g0039 a0002c0004t0001g0051 others(6): Show a0001c0003t0001g0098 a0001c0007t0001g0039 a0002c0004t0001g0051 a0002c0004t0001g0087 a0002c0010t0001g0140 a0002c0010t0001g0152 a0002c0010t0001g0157 a0002c0010t0001g0159 a0002c0039t0001g0144	9	167	0.0539	16	c.853 others(31): Show c.853-151_853-136dupAAGAAAGAAAGAAAGA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1192708	T T	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	167	0.0060	16	c.852 others(31): Show c.852+494_852+509dupGAAAGAAAGAAAGAAA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1192765	T T	TTTCTTTC others(9): Show TTTCTTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0004 a0004	a0004c0012 a0004c0012	a0004c0012t0004 a0004c0012t0004	a0004c0012t0004g0128 a0004c0012t0004g0128	1	167	0.0060	16	c.852 others(31): Show c.852+452_852+453insGGAAGGAAGGAAAGAA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1204150	C C	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00609.hp1 HG01070.hp2 others(11): Show HG00408.hp1 HG00609.hp1 HG01070.hp2 HG01109.hp1 HG01981.hp1 HG01981.hp2 HG02132.hp1 HG02155.hp1 HG02165.hp2 HG03491.hp1 HG03942.hp2 NA19082.hp1 NA19084.hp1 NA21309.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0014 a0016	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0008 a0002c0004 a0002c0005 a0002c0013 a0002c0042 a0004c0012 a0014c0027 a0016c0030	a0001c0001t0001 a0001c0002t0002 a0001c0003t0001 others(9): Show a0001c0001t0001 a0001c0002t0002 a0001c0003t0001 a0001c0007t0001 a0001c0008t0001 a0002c0004t0001 a0002c0005t0001 a0002c0013t0002 a0002c0042t0009 a0004c0012t0004 a0014c0027t0007 a0016c0030t0003	a0001c0001t0001g0054 a0001c0002t0002g0071 a0001c0003t0001g0006 others(11): Show a0001c0001t0001g0054 a0001c0002t0002g0071 a0001c0003t0001g0006 a0001c0003t0001g0050 a0001c0007t0001g0112 a0001c0008t0001g0162 a0002c0004t0001g0034 a0002c0004t0001g0087 a0002c0005t0001g0118 a0002c0013t0002g0139 a0002c0042t0009g0150 a0004c0012t0004g0074 a0014c0027t0007g0068 a0016c0030t0003g0126	14	167	0.0838	16	c.350 others(33): Show c.350-1631_350-1616dupCACACACACACACACA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	3/7			chrX	TogoVar
CRLS1_chr20_6001123_6045053	6011572	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG02572.hp2 HG03017.hp1 others(2): Show HG01515.hp1 HG02572.hp2 HG03017.hp1 HG03834.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0015 a0001c0001t0001 a0001c0001t0011 a0001c0001t0015	a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0244 others(2): Show a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0244 a0001c0001t0011g0237 a0001c0001t0015g0202	5	366	0.0137	16	c.444 others(33): Show c.444+1679_444+1694dupTTTTTTTTTTTTTTTT	CRLS1	ENSG00000088766.12	transcript	ENST00000378863.9	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
CRMP1_chr4_5815764_5898086	5827733	G G	GCACACAC others(9): Show GCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02896.hp2 HG02897.hp1 others(3): Show HG02109.hp1 HG02896.hp2 HG02897.hp1 HG03453.hp2 HG03540.hp1 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0012 a0002c0017 a0001c0012 a0002c0017	a0001c0012t0001 a0002c0017t0001 a0001c0012t0001 a0002c0017t0001	a0001c0012t0001g0057 a0001c0012t0001g0187 a0001c0012t0001g0190 others(3): Show a0001c0012t0001g0057 a0001c0012t0001g0187 a0001c0012t0001g0190 a0001c0012t0001g0191 a0002c0017t0001g0013 a0002c0017t0001g0031	6	314	0.0191	16	c.180 others(33): Show c.1803+740_1803+755dupTGTGTGTGTGTGTGTG	CRMP1	ENSG00000072832.15	transcript	ENST00000324989.12	protein_coding	12/13			chr4	TogoVar
CRMP1_chr4_5815764_5898086	5883236	C C	CTTCCTTC others(9): Show CTTCCTTCCTTCCATCT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0310 a0001c0001t0014g0310	1	314	0.0032	16	c.381 others(33): Show c.381+9352_381+9353insAGATGGAAGGAAGGAA	CRMP1	ENSG00000072832.15	transcript	ENST00000324989.12	protein_coding	1/13			chr4	TogoVar
CRMP1_chr4_5815764_5898086	5883655	G G	GACACACA others(9): Show GACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01934.hp1 HG02895.hp2 others(1): Show HG01175.hp1 HG01934.hp1 HG02895.hp2 HG03195.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0002c0004 a0002c0007 a0001c0003 a0002c0004 a0002c0007	a0001c0003t0001 a0002c0004t0002 a0002c0007t0003 a0001c0003t0001 a0002c0004t0002 a0002c0007t0003	a0001c0003t0001g0181 a0002c0004t0002g0052 a0002c0004t0002g0053 others(1): Show a0001c0003t0001g0181 a0002c0004t0002g0052 a0002c0004t0002g0053 a0002c0007t0003g0021	4	314	0.0127	16	c.381 others(33): Show c.381+8918_381+8933dupGTGTGTGTGTGTGTGT	CRMP1	ENSG00000072832.15	transcript	ENST00000324989.12	protein_coding	1/13			chr4	TogoVar
CRNKL1_chr20_20029368_20057466	20030349	A A	ATAAAATC others(9): Show ATAAAATCCAGTATTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02071.hp1 NA18941.hp2 NA18948.hp2 others(7): Show HG02071.hp1 NA18941.hp2 NA18948.hp2 NA18952.hp2 NA18972.hp1 NA18991.hp1 NA18995.hp1 NA19003.hp1 NA19010.hp1 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0022 a0001c0001t0006 a0001c0001t0022	a0001c0001t0006g0005 a0001c0001t0006g0042 a0001c0001t0006g0103 others(2): Show a0001c0001t0006g0005 a0001c0001t0006g0042 a0001c0001t0006g0103 a0001c0001t0006g0110 a0001c0001t0022g0104	10	428	0.0234	16	c.58 others(27): Show c.5845_*5846insGGAATACTGGATTTTA	CRNKL1	ENSG00000101343.15	transcript	ENST00000536226.2	protein_coding		4018		chr20	TogoVar
CROCC2_chr2_240901336_240998311	240923559	C C	CCCCCACA others(9): Show CCCCCACACTGACCCGG	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02970.hp1 HG02258.hp1 HG02970.hp1	a0016 a0044 a0016 a0044	a0016c0073 a0044c0074 a0016c0073 a0044c0074	a0016c0073t0007 a0044c0074t0007 a0016c0073t0007 a0044c0074t0007	a0016c0073t0007g0166 a0044c0074t0007g0165 a0016c0073t0007g0166 a0044c0074t0007g0165	2	350	0.0057	16	c.488 others(31): Show c.488+918_488+919insACACTGACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923611	C C	CCCCCACA others(9): Show CCCCCACACTAACCAGT	intron_variant intron_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0022 a0001c0022	a0001c0022t0002 a0001c0022t0002	a0001c0022t0002g0322 a0001c0022t0002g0322	1	350	0.0029	16	c.488 others(31): Show c.488+979_488+980insAGTCCCCACACTAACC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923697	C C	CCCCACAC others(9): Show CCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02615.hp1 HG03041.hp1 HG02559.hp2 HG02615.hp1 HG03041.hp1	a0015 a0022 a0015 a0022	a0015c0016 a0022c0042 a0015c0016 a0022c0042	a0015c0016t0001 a0015c0016t0002 a0022c0042t0002 a0015c0016t0001 a0015c0016t0002 a0022c0042t0002	a0015c0016t0001g0201 a0015c0016t0002g0246 a0022c0042t0002g0282 a0015c0016t0001g0201 a0015c0016t0002g0246 a0022c0042t0002g0282	3	350	0.0086	16	c.488 others(33): Show c.488+1055_488+1056insACACTAACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923713	G G	GTCCCCAC others(9): Show GTCCCCACACTAACCCA	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02004.hp1 HG02129.hp2 others(9): Show HG01175.hp1 HG02004.hp1 HG02129.hp2 HG02683.hp2 HG02896.hp1 HG03579.hp1 NA18906.hp1 NA18948.hp2 NA18963.hp2 NA19080.hp2 NA19088.hp1 NA20129.hp2	a0001 a0002 a0008 others(2): Show a0001 a0002 a0008 a0026 a0062	a0001c0022 a0002c0002 a0002c0011 others(4): Show a0001c0022 a0002c0002 a0002c0011 a0002c0033 a0008c0008 a0026c0078 a0062c0095	a0001c0022t0002 a0002c0002t0001 a0002c0002t0002 others(5): Show a0001c0022t0002 a0002c0002t0001 a0002c0002t0002 a0002c0011t0002 a0002c0033t0002 a0008c0008t0002 a0026c0078t0004 a0062c0095t0002	a0001c0022t0002g0322 a0001c0022t0002g0343 a0002c0002t0001g0146 others(9): Show a0001c0022t0002g0322 a0001c0022t0002g0343 a0002c0002t0001g0146 a0002c0002t0002g0252 a0002c0002t0002g0323 a0002c0011t0002g0243 a0002c0011t0002g0297 a0002c0033t0002g0291 a0008c0008t0002g0299 a0008c0008t0002g0300 a0026c0078t0004g0341 a0062c0095t0002g0298	12	350	0.0343	16	c.488 others(33): Show c.488+1068_488+1069insTCCCCACACTAACCCA	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923732	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG02155.hp2 HG02155.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0274 a0001c0001t0002g0274	1	350	0.0029	16	c.488 others(33): Show c.488+1091_488+1092insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923836	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG02027.hp2 NA18953.hp1 NA18962.hp1 others(4): Show HG02027.hp2 NA18953.hp1 NA18962.hp1 NA18964.hp2 NA19000.hp1 NA19002.hp1 NA19011.hp2	a0006 a0009 a0006 a0009	a0006c0007 a0009c0010 a0006c0007 a0009c0010	a0006c0007t0001 a0009c0010t0001 a0009c0010t0003 a0006c0007t0001 a0009c0010t0001 a0009c0010t0003	a0006c0007t0001g0195 a0006c0007t0001g0216 a0006c0007t0001g0233 others(4): Show a0006c0007t0001g0195 a0006c0007t0001g0216 a0006c0007t0001g0233 a0009c0010t0001g0223 a0009c0010t0003g0190 a0009c0010t0003g0192 a0009c0010t0003g0197	7	350	0.0200	16	c.488 others(33): Show c.488+1195_488+1196insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923837	C C	CCCCACAC others(9): Show CCCCACACTGACCCAGT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0201 a0015c0016t0001g0201	1	350	0.0029	16	c.488 others(33): Show c.488+1195_488+1196insACACTGACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923854	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02451.hp1 HG02486.hp1 others(3): Show HG02015.hp1 HG02451.hp1 HG02486.hp1 HG02976.hp1 NA18612.hp2 NA19004.hp2	a0001 a0002 a0013 others(1): Show a0001 a0002 a0013 a0016	a0001c0001 a0002c0002 a0013c0023 others(1): Show a0001c0001 a0002c0002 a0013c0023 a0016c0092	a0001c0001t0001 a0002c0002t0001 a0013c0023t0001 others(2): Show a0001c0001t0001 a0002c0002t0001 a0013c0023t0001 a0013c0023t0008 a0016c0092t0001	a0001c0001t0001g0155 a0002c0002t0001g0120 a0002c0002t0001g0151 others(3): Show a0001c0001t0001g0155 a0002c0002t0001g0120 a0002c0002t0001g0151 a0013c0023t0001g0114 a0013c0023t0008g0110 a0016c0092t0001g0113	6	350	0.0171	16	c.488 others(33): Show c.488+1213_488+1214insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923854	C C	CCCCCACA others(9): Show CCCCCACACTAACCCGG	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0156	1	350	0.0029	16	c.488 others(33): Show c.488+1213_488+1214insACACTAACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923991	C C	CCCCCACA others(9): Show CCCCCACACTAATCCGG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0204 a0006c0007t0001g0204	1	350	0.0029	16	c.488 others(33): Show c.488+1350_488+1351insACACTAATCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924009	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0010 a0010	a0010c0009 a0010c0009	a0010c0009t0001 a0010c0009t0001	a0010c0009t0001g0051 a0010c0009t0001g0051	1	350	0.0029	16	c.488 others(33): Show c.488+1368_488+1369insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924009	C C	CCCCCACA others(9): Show CCCCCACACTAACCCGG	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0009 a0009	a0009c0048 a0009c0048	a0009c0048t0001 a0009c0048t0001	a0009c0048t0001g0207 a0009c0048t0001g0207	1	350	0.0029	16	c.488 others(33): Show c.488+1368_488+1369insACACTAACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924077	G G	GGTCCCCA others(9): Show GGTCCCCACACTAACCC	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0318 a0002c0002t0002g0318	1	350	0.0029	16	c.488 others(33): Show c.488+1433_488+1434insTCCCCACACTAACCCG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924079	C C	CCCCCACA others(9): Show CCCCCACACTAATCCGG	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18973.hp1 NA18984.hp2 NA18967.hp1 NA18973.hp1 NA18984.hp2	a0006 a0009 a0021 a0006 a0009 a0021	a0006c0007 a0009c0010 a0021c0019 a0006c0007 a0009c0010 a0021c0019	a0006c0007t0001 a0009c0010t0003 a0021c0019t0001 a0006c0007t0001 a0009c0010t0003 a0021c0019t0001	a0006c0007t0001g0215 a0009c0010t0003g0206 a0021c0019t0001g0220 a0006c0007t0001g0215 a0009c0010t0003g0206 a0021c0019t0001g0220	3	350	0.0086	16	c.488 others(33): Show c.488+1438_488+1439insACACTAATCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924080	C C	CCCCACAC others(9): Show CCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0042 a0042	a0042c0065 a0042c0065	a0042c0065t0002 a0042c0065t0002	a0042c0065t0002g0339 a0042c0065t0002g0339	1	350	0.0029	16	c.488 others(33): Show c.488+1438_488+1439insACACTAACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924096	G G	GTCCCCAC others(9): Show GTCCCCACACTGACCCA	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03041.hp1 HG02559.hp2 HG03041.hp1	a0015 a0022 a0015 a0022	a0015c0016 a0022c0042 a0015c0016 a0022c0042	a0015c0016t0002 a0022c0042t0002 a0015c0016t0002 a0022c0042t0002	a0015c0016t0002g0246 a0022c0042t0002g0282 a0015c0016t0002g0246 a0022c0042t0002g0282	2	350	0.0057	16	c.488 others(33): Show c.488+1451_488+1452insTCCCCACACTGACCCA	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924097	C C	CCCCCACA others(9): Show CCCCCACACTAACCCGG	intron_variant intron_variant	MODIFIER	NA18945.hp1 NA19085.hp1 NA18945.hp1 NA19085.hp1	a0006 a0009 a0006 a0009	a0006c0007 a0009c0010 a0006c0007 a0009c0010	a0006c0007t0001 a0009c0010t0003 a0006c0007t0001 a0009c0010t0003	a0006c0007t0001g0212 a0009c0010t0003g0211 a0006c0007t0001g0212 a0009c0010t0003g0211	2	350	0.0057	16	c.488 others(33): Show c.488+1456_488+1457insACACTAACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924098	C C	CCCCACAC others(9): Show CCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0201 a0015c0016t0001g0201	1	350	0.0029	16	c.488 others(33): Show c.488+1456_488+1457insACACTAACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924115	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01074.hp1 HG01358.hp2 others(3): Show HG00642.hp1 HG01074.hp1 HG01358.hp2 HG02622.hp2 HG02735.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0008 others(1): Show a0001 a0002 a0008 a0043	a0001c0001 a0002c0002 a0008c0008 others(1): Show a0001c0001 a0002c0002 a0008c0008 a0043c0059	a0001c0001t0002 a0001c0001t0004 a0002c0002t0002 others(2): Show a0001c0001t0002 a0001c0001t0004 a0002c0002t0002 a0008c0008t0002 a0043c0059t0002	a0001c0001t0002g0277 a0001c0001t0004g0304 a0002c0002t0002g0259 others(3): Show a0001c0001t0002g0277 a0001c0001t0004g0304 a0002c0002t0002g0259 a0002c0002t0002g0276 a0008c0008t0002g0296 a0043c0059t0002g0295	6	350	0.0171	16	c.488 others(33): Show c.488+1474_488+1475insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924116	C C	CCCCACAC others(9): Show CCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG02280.hp1 NA21309.hp2 HG02280.hp1 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0132 a0002c0002t0001g0167 a0002c0002t0001g0132 a0002c0002t0001g0167	2	350	0.0057	16	c.488 others(33): Show c.488+1474_488+1475insACACTAACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924116	C C	CCCCACAC others(9): Show CCCCACACTGACCCAGT	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0007 a0007	a0007c0006 a0007c0006	a0007c0006t0003 a0007c0006t0003	a0007c0006t0003g0162 a0007c0006t0003g0162	1	350	0.0029	16	c.488 others(33): Show c.488+1474_488+1475insACACTGACCCAGTCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924307	C C	CCCCCACA others(9): Show CCCCCACACTAATCCGG	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03041.hp1 NA18973.hp1 HG02559.hp2 HG03041.hp1 NA18973.hp1	a0006 a0015 a0022 a0006 a0015 a0022	a0006c0007 a0015c0016 a0022c0042 a0006c0007 a0015c0016 a0022c0042	a0006c0007t0001 a0015c0016t0002 a0022c0042t0002 a0006c0007t0001 a0015c0016t0002 a0022c0042t0002	a0006c0007t0001g0215 a0015c0016t0002g0246 a0022c0042t0002g0282 a0006c0007t0001g0215 a0015c0016t0002g0246 a0022c0042t0002g0282	3	350	0.0086	16	c.489 others(33): Show c.489-1413_489-1412insACACTAATCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924347	A A	ACACTAAC others(9): Show ACACTAACCCAGTCCCC	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02886.hp2 HG02895.hp2 others(2): Show HG02622.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0143 a0001c0001t0003g0144 others(1): Show a0001c0001t0003g0003 a0001c0001t0003g0143 a0001c0001t0003g0144 a0001c0001t0003g0145	5	350	0.0143	16	c.489 others(33): Show c.489-1377_489-1376insCACTAACCCAGTCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924347	A A	ACACTAAC others(9): Show ACACTAACCCGGCCCCC	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0020 a0020	a0020c0026 a0020c0026	a0020c0026t0001 a0020c0026t0001	a0020c0026t0001g0046 a0020c0026t0001g0046	1	350	0.0029	16	c.489 others(33): Show c.489-1377_489-1376insCACTAACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924347	A A	ACACTGAC others(9): Show ACACTGACCCGGCCCCC	intron_variant intron_variant	MODIFIER	NA19067.hp1 NA19080.hp1 NA19067.hp1 NA19080.hp1	a0007 a0007	a0007c0006 a0007c0006	a0007c0006t0003 a0007c0006t0003	a0007c0006t0003g0080 a0007c0006t0003g0081 a0007c0006t0003g0080 a0007c0006t0003g0081	2	350	0.0057	16	c.489 others(33): Show c.489-1377_489-1376insCACTGACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924467	A A	ACACTGAC others(9): Show ACACTGACCCGGCCCCC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03041.hp1 HG02559.hp2 HG03041.hp1	a0015 a0022 a0015 a0022	a0015c0016 a0022c0042 a0015c0016 a0022c0042	a0015c0016t0002 a0022c0042t0002 a0015c0016t0002 a0022c0042t0002	a0015c0016t0002g0246 a0022c0042t0002g0282 a0015c0016t0002g0246 a0022c0042t0002g0282	2	350	0.0057	16	c.489 others(33): Show c.489-1257_489-1256insCACTGACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924480	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0012 a0012	a0012c0013 a0012c0013	a0012c0013t0001 a0012c0013t0001	a0012c0013t0001g0124 a0012c0013t0001g0124	1	350	0.0029	16	c.489 others(33): Show c.489-1240_489-1239insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924603	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	NA18973.hp1 NA19011.hp2 NA18973.hp1 NA19011.hp2	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0215 a0006c0007t0001g0216 a0006c0007t0001g0215 a0006c0007t0001g0216	2	350	0.0057	16	c.489 others(33): Show c.489-1117_489-1116insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924638	C C	CCCCCACA others(9): Show CCCCCACACTGACCCGG	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0006 a0006	a0006c0046 a0006c0046	a0006c0046t0001 a0006c0046t0001	a0006c0046t0001g0228 a0006c0046t0001g0228	1	350	0.0029	16	c.489 others(33): Show c.489-1082_489-1081insACACTGACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924656	C C	CCCCCACA others(9): Show CCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02300.hp2 HG01952.hp2 HG02300.hp2	a0006 a0029 a0006 a0029	a0006c0007 a0029c0049 a0006c0007 a0029c0049	a0006c0007t0001 a0029c0049t0001 a0006c0007t0001 a0029c0049t0001	a0006c0007t0001g0194 a0029c0049t0001g0198 a0006c0007t0001g0194 a0029c0049t0001g0198	2	350	0.0057	16	c.489 others(33): Show c.489-1064_489-1063insACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924656	C C	CCCCCACA others(9): Show CCCCCACACTGACCCGG	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02015.hp2 HG02723.hp1 others(10): Show HG00558.hp1 HG02015.hp2 HG02723.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp2 NA18966.hp2 NA18979.hp2 NA18986.hp1 NA19000.hp2 NA19002.hp2 NA19005.hp2 NA19056.hp1	a0007 a0010 a0031 others(1): Show a0007 a0010 a0031 a0050	a0007c0006 a0010c0009 a0031c0052 others(1): Show a0007c0006 a0010c0009 a0031c0052 a0050c0039	a0007c0006t0001 a0007c0006t0003 a0010c0009t0001 others(3): Show a0007c0006t0001 a0007c0006t0003 a0010c0009t0001 a0010c0009t0005 a0031c0052t0001 a0050c0039t0003	a0007c0006t0001g0088 a0007c0006t0003g0002 a0007c0006t0003g0162 others(8): Show a0007c0006t0001g0088 a0007c0006t0003g0002 a0007c0006t0003g0162 a0010c0009t0001g0087 a0010c0009t0001g0089 a0010c0009t0001g0090 a0010c0009t0001g0091 a0010c0009t0001g0092 a0010c0009t0005g0001 a0031c0052t0001g0169 a0050c0039t0003g0214	13	350	0.0371	16	c.489 others(33): Show c.489-1064_489-1063insACACTGACCCGGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar

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