Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CTDSPL2_chr15_44422629_44534038	44521937	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03098.hp2 HG03139.hp1 HG02970.hp2 HG03098.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0051 a0001c0001t0011g0052 a0001c0001t0011g0054 a0001c0001t0011g0051 a0001c0001t0011g0052 a0001c0001t0011g0054	3	234	0.0128	16	c.133 others(33): Show c.1335+542_1335+557dupAAAAAAAAAAAAAAAA	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTIF_chr18_48534031_48868217	48568633	T T	TAAAAAAA others(9): Show TAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02135.hp1 NA18747.hp1 NA18952.hp2 others(2): Show HG02135.hp1 NA18747.hp1 NA18952.hp2 NA18972.hp1 NA18972.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0004 a0001c0001 a0001c0003 a0002c0004	a0001c0001t0009 a0001c0001t0010 a0001c0003t0001 others(1): Show a0001c0001t0009 a0001c0001t0010 a0001c0003t0001 a0002c0004t0024	a0001c0001t0009g0003 a0001c0001t0010g0078 a0001c0003t0001g0080 others(2): Show a0001c0001t0009g0003 a0001c0001t0010g0078 a0001c0003t0001g0080 a0001c0003t0001g0121 a0002c0004t0024g0113	5	144	0.0347	16	c.-29 others(35): Show c.-29+29341_-29+29356dupAAAAAAAAAAAAAAAA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48603369	A A	AGATGGAT others(9): Show AGATGGATGGATGGATG	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01884.hp1 HG01884.hp2 others(17): Show HG01243.hp1 HG01884.hp1 HG01884.hp2 HG02109.hp2 HG02615.hp1 HG02965.hp1 HG02970.hp1 HG03098.hp1 HG03195.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG04115.hp2 NA18945.hp1 NA18952.hp2 NA19240.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0007 a0001c0001 a0001c0002 a0003c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(13): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0015 a0001c0001t0022 a0001c0001t0023 a0001c0001t0032 a0001c0001t0037 a0001c0001t0047 a0001c0001t0050 a0001c0001t0051 a0001c0002t0003 a0001c0002t0049 a0003c0007t0013	a0001c0001t0001g0032 a0001c0001t0001g0066 a0001c0001t0001g0075 others(17): Show a0001c0001t0001g0032 a0001c0001t0001g0066 a0001c0001t0001g0075 a0001c0001t0003g0030 a0001c0001t0007g0040 a0001c0001t0007g0046 a0001c0001t0008g0007 a0001c0001t0008g0023 a0001c0001t0010g0078 a0001c0001t0015g0083 a0001c0001t0022g0056 a0001c0001t0023g0048 a0001c0001t0032g0033 a0001c0001t0037g0039 a0001c0001t0047g0031 a0001c0001t0050g0124 a0001c0001t0051g0005 a0001c0002t0003g0128 a0001c0002t0049g0072 a0003c0007t0013g0027	20	144	0.1389	16	c.-28 others(35): Show c.-28-16157_-28-16142dupGGATGGATGGATGGAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48633701	C C	CAATAAAT others(9): Show CAATAAATAAATAAATA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG06807.hp2 NA20300.hp1 HG02647.hp1 HG06807.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0046 a0001c0001t0004 a0001c0001t0046	a0001c0001t0004g0055 a0001c0001t0004g0134 a0001c0001t0046g0140 a0001c0001t0004g0055 a0001c0001t0004g0134 a0001c0001t0046g0140	3	144	0.0208	16	c.181 others(33): Show c.181-2889_181-2874dupAAATAAATAAATAAAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48667082	G G	GACACACA others(9): Show GACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0118 a0001c0001t0003g0118	1	144	0.0069	16	c.431 others(33): Show c.431+2550_431+2565dupACACACACACACACAC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48687305	G G	GACACACA others(9): Show GACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0104 a0001c0001t0005g0104	1	144	0.0069	16	c.507 others(35): Show c.507+16592_507+16607dupACACACACACACACAC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTNNA1_chr5_138748425_138940034	138748904	C C	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0028 a0001c0002t0008g0028	1	180	0.0056	16	c.-46 others(27): Show c.-4609_-4608insTGTGTGTGTGTGTGTG	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding		4520		chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138799857	G G	GATGGATG others(9): Show GATGGATGTATGTATGT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA21309.hp2 NA18522.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0174 a0001c0001t0006g0175 a0001c0001t0006g0174 a0001c0001t0006g0175	2	180	0.0111	16	c.302 others(35): Show c.302-10178_302-10177insGATGTATGTATGTATG	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138825482	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01109.hp1 HG01515.hp2 others(17): Show HG00735.hp2 HG01109.hp1 HG01515.hp2 HG01891.hp1 HG01981.hp2 HG02129.hp1 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02647.hp2 HG03139.hp1 HG03225.hp1 HG03239.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG04184.hp1 NA18948.hp2 NA18961.hp2 NA18986.hp2	a0001 a0001	a0001c0001 a0001c0014 a0001c0001 a0001c0014	a0001c0001t0001 a0001c0014t0001 a0001c0001t0001 a0001c0014t0001	a0001c0001t0001g0036 a0001c0001t0001g0106 a0001c0001t0001g0108 others(17): Show a0001c0001t0001g0036 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0123 a0001c0001t0001g0126 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0166 a0001c0001t0001g0170 a0001c0001t0001g0173 a0001c0001t0001g0179 a0001c0014t0001g0145	20	180	0.1111	16	c.858 others(31): Show c.858+684_858+699dupTTTTTTTTTTTTTTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138858596	T T	TTTTCTTT others(9): Show TTTTCTTTTTCTTTTTC	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0027 a0001c0002t0003g0027	1	180	0.0056	16	c.106 others(37): Show c.1063-27613_1063-27612insCTTTTTCTTTTTCTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138905111	A A	AATACATA others(9): Show AATACATACATACATAC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02895.hp1 HG02723.hp1 HG02895.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0005 a0001c0002t0003 a0001c0002t0005	a0001c0002t0003g0029 a0001c0002t0005g0050 a0001c0002t0003g0029 a0001c0002t0005g0050	2	180	0.0111	16	c.138 others(33): Show c.1389+674_1389+689dupCATACATACATACATA	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	10/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138916177	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0003 a0001c0008t0003	a0001c0008t0003g0030 a0001c0008t0003g0030	1	180	0.0056	16	c.139 others(35): Show c.1390-1551_1390-1550insAAAAAAAAAAAAAAAA	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	10/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA2_chr2_79508051_80653780	79536574	A A	AGTATGTG others(9): Show AGTATGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02109.hp1 HG03516.hp1 HG01106.hp1 HG02109.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0002t0003 a0001c0001t0002 a0001c0002t0001 a0001c0002t0003	a0001c0001t0002g0057 a0001c0002t0001g0034 a0001c0002t0003g0036 a0001c0001t0002g0057 a0001c0002t0001g0034 a0001c0002t0003g0036	3	68	0.0441	16	c.-6+ others(33): Show c.-6+23369_-6+23370insATGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79536574	A A	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0045 a0001c0016t0001g0045	1	68	0.0147	16	c.-6+ others(33): Show c.-6+23380_-6+23395dupGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79563161	G G	GTATATAT others(9): Show GTATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0013 a0001c0003t0001g0013	1	68	0.0147	16	c.-6+ others(33): Show c.-6+49966_-6+49981dupATATATATATATATAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79814638	C C	CACACACA others(9): Show CACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02886.hp1 HG03098.hp1 HG02647.hp1 HG02886.hp1 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0005 a0001c0004t0001 a0001c0003t0005 a0001c0004t0001	a0001c0003t0005g0017 a0001c0004t0001g0032 a0001c0004t0001g0059 a0001c0003t0005g0017 a0001c0004t0001g0032 a0001c0004t0001g0059	3	68	0.0441	16	c.299 others(35): Show c.299-43374_299-43373insCACACACACACACATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829360	T T	TACACACA others(9): Show TACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0047 a0001c0002t0001g0047	1	68	0.0147	16	c.299 others(35): Show c.299-28613_299-28598dupCACACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79844979	T T	TACACACA others(9): Show TACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0026 a0001c0003t0001g0026	1	68	0.0147	16	c.299 others(35): Show c.299-13026_299-13011dupCACACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79860546	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	68	0.0147	16	c.465 others(33): Show c.465+2371_465+2386dupTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	4/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79956843	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0001 a0001c0014t0001	a0001c0014t0001g0016 a0001c0014t0001g0016	1	68	0.0147	16	c.105 others(37): Show c.1056+47056_1056+47071dupTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80116902	A A	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0003 a0003	a0003c0015 a0003c0015	a0003c0015t0001 a0003c0015t0001	a0003c0015t0001g0014 a0003c0015t0001g0014	1	68	0.0147	16	c.105 others(39): Show c.1056+207124_1056+207139dupGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80117455	A A	AGAGTGTG others(9): Show AGAGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	68	0.0147	16	c.105 others(39): Show c.1056+207659_1056+207660insAGTGTGTGTGTGTGTG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126630	C C	CCCTTCCT others(9): Show CCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	68	0.0147	16	c.105 others(39): Show c.1056+216836_1056+216837insTCCTTCCTTCCTTCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80279049	C C	CGTGTGTG others(9): Show CGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0034 a0001c0002t0001g0034	1	68	0.0147	16	c.105 others(39): Show c.1057-114140_1057-114125dupTGTGTGTGTGTGTGTG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80569633	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	68	0.0147	16	c.174 others(35): Show c.1742-4518_1742-4503dupTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	12/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80591457	G G	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02970.hp2 HG03688.hp1 HG02622.hp2 HG02970.hp2 HG03688.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 a0001c0002 a0001c0003 a0001c0004	a0001c0002t0002 a0001c0003t0002 a0001c0004t0002 a0001c0002t0002 a0001c0003t0002 a0001c0004t0002	a0001c0002t0002g0065 a0001c0003t0002g0008 a0001c0004t0002g0048 a0001c0002t0002g0065 a0001c0003t0002g0008 a0001c0004t0002g0048	3	68	0.0441	16	c.218 others(35): Show c.2189+1978_2189+1993dupTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	15/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80601417	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0061 a0001c0001t0004g0061	1	68	0.0147	16	c.219 others(35): Show c.2190-2654_2190-2653insTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	15/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80639513	A A	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01106.hp1 HG00735.hp2 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0057 a0001c0002t0002g0015 a0001c0001t0002g0057 a0001c0002t0002g0015	2	68	0.0294	16	c.257 others(35): Show c.2575-8060_2575-8045dupGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	18/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA3_chr10_65907523_67701195	66018187	T T	TACACACA others(9): Show TACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02622.hp2 HG02895.hp1 others(1): Show HG01243.hp2 HG02622.hp2 HG02895.hp1 HG06807.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0004c0008	a0001c0001t0009 a0001c0003t0022 a0002c0002t0005 others(1): Show a0001c0001t0009 a0001c0003t0022 a0002c0002t0005 a0004c0008t0005	a0001c0001t0009g0031 a0001c0003t0022g0022 a0002c0002t0005g0014 others(1): Show a0001c0001t0009g0031 a0001c0003t0022g0022 a0002c0002t0005g0014 a0004c0008t0005g0033	4	46	0.0870	16	c.216 others(37): Show c.2160-29406_2160-29391dupGTGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66021852	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 NA18612.hp1 NA18612.hp2 others(2): Show HG02280.hp2 NA18612.hp1 NA18612.hp2 NA18964.hp2 NA19080.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0001c0001t0005 a0001c0001t0016 others(2): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0016 a0001c0001t0025 a0002c0002t0002	a0001c0001t0004g0043 a0001c0001t0005g0010 a0001c0001t0016g0003 others(2): Show a0001c0001t0004g0043 a0001c0001t0005g0010 a0001c0001t0016g0003 a0001c0001t0025g0045 a0002c0002t0002g0013	5	46	0.1087	16	c.216 others(37): Show c.2160-33071_2160-33056dupAAAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66024085	A A	ATTTTTTT others(9): Show ATTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 NA18612.hp2 HG02818.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0004 a0001c0001t0006	a0001c0001t0004g0043 a0001c0001t0006g0027 a0001c0001t0004g0043 a0001c0001t0006g0027	2	46	0.0435	16	c.216 others(37): Show c.2160-35304_2160-35289dupAAAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	15/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66154719	C C	CATATATA others(9): Show CATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0019 a0001c0001t0019g0019	1	46	0.0217	16	c.188 others(37): Show c.1885-51486_1885-51471dupATATATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66189600	T T	TTATATTT others(9): Show TTATATTTATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0014 a0002c0002t0005g0014	1	46	0.0217	16	c.188 others(37): Show c.1885-86352_1885-86351insTATATATATAAATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66199805	A A	ATATATAT others(9): Show ATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0031 a0001c0001t0009g0031	1	46	0.0217	16	c.188 others(37): Show c.1884+80664_1884+80665insAATATATATATATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66199805	A A	ATATATAT others(9): Show ATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0005 a0001c0004t0007g0005	1	46	0.0217	16	c.188 others(37): Show c.1884+80664_1884+80665insAAAAAATATATATATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66222599	C C	CGAAAGAA others(9): Show CGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0015 a0001c0007t0015	a0001c0007t0015g0016 a0001c0007t0015g0016	1	46	0.0217	16	c.188 others(37): Show c.1884+57855_1884+57870dupTTTCTTTCTTTCTTTC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66222686	A A	AGGGAGGA others(9): Show AGGGAGGAAGGAAGGGC	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02896.hp1 NA18964.hp2 HG02895.hp1 HG02896.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0009 a0001c0001t0025 a0001c0011t0009 a0001c0001t0009 a0001c0001t0025 a0001c0011t0009	a0001c0001t0009g0031 a0001c0001t0025g0045 a0001c0011t0009g0017 a0001c0001t0009g0031 a0001c0001t0025g0045 a0001c0011t0009g0017	3	46	0.0652	16	c.188 others(37): Show c.1884+57783_1884+57784insGCCCTTCCTTCCTCCC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66328911	C C	CATATATA others(9): Show CATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 NA18960.hp1 HG02896.hp2 HG02897.hp2 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0024 a0001c0001t0006 a0001c0001t0024	a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0024g0044 a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0024g0044	3	46	0.0652	16	c.173 others(37): Show c.1733-48306_1733-48291dupATATATATATATATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360776	T T	TCTTCCTT others(9): Show TCTTCCTTCCTTCCTTC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0035 a0002c0002t0001g0035	1	46	0.0217	16	c.173 others(37): Show c.1732+18375_1732+18376insGAAGGAAGGAAGGAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66418556	G G	GACACACA others(9): Show GACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0006g0007 a0001c0001t0006g0008	2	46	0.0435	16	c.153 others(37): Show c.1532-39220_1532-39205dupGTGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66420831	A A	AAATTAAT others(9): Show AAATTAATTAATTAATT	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0018 a0001c0003t0018	a0001c0003t0018g0037 a0001c0003t0018g0037	1	46	0.0217	16	c.153 others(37): Show c.1532-41480_1532-41479insAATTAATTAATTAATT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66420835	A A	AAATAAAT others(9): Show AAATAAATAAATAAATT	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0013 a0002c0002t0002g0013	1	46	0.0217	16	c.153 others(37): Show c.1532-41484_1532-41483insAATTTATTTATTTATT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66420835	A A	AAATAAAT others(9): Show AAATAAATAAATTAATT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0046 a0002c0002t0026g0046	1	46	0.0217	16	c.153 others(37): Show c.1532-41484_1532-41483insAATTAATTTATTTATT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66420835	A A	AAATAAAT others(9): Show AAATAAATTAATTAATT	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp1 HG02895.hp2 HG02897.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0010 a0001c0005t0010	a0001c0005t0010g0029 a0001c0005t0010g0034 a0001c0005t0010g0029 a0001c0005t0010g0034	2	46	0.0435	16	c.153 others(37): Show c.1532-41484_1532-41483insAATTAATTAATTTATT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66420835	A A	AAATTAAT others(9): Show AAATTAATTAATTAATT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02622.hp1 HG02145.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0008 a0001c0001t0007 a0001c0001t0008	a0001c0001t0007g0020 a0001c0001t0008g0004 a0001c0001t0007g0020 a0001c0001t0008g0004	2	46	0.0435	16	c.153 others(37): Show c.1532-41484_1532-41483insAATTAATTAATTAATT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66466339	T T	TACACACA others(9): Show TACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0002 a0001c0003t0008g0002	1	46	0.0217	16	c.153 others(37): Show c.1531+54262_1531+54277dupGTGTGTGTGTGTGTGT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66479950	T T	TCACACAC others(9): Show TCACACACACACACACA	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0009 a0001c0001t0002g0009	1	46	0.0217	16	c.153 others(37): Show c.1531+40651_1531+40666dupTGTGTGTGTGTGTGTG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66515265	A A	ATATCTAT others(9): Show ATATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02647.hp1 HG02965.hp1 others(1): Show HG02145.hp2 HG02647.hp1 HG02965.hp1 HG06807.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0005	a0001c0006 a0003c0009 a0004c0008 others(1): Show a0001c0006 a0003c0009 a0004c0008 a0005c0010	a0001c0006t0001 a0003c0009t0003 a0004c0008t0005 others(1): Show a0001c0006t0001 a0003c0009t0003 a0004c0008t0005 a0005c0010t0002	a0001c0006t0001g0001 a0003c0009t0003g0036 a0004c0008t0005g0033 others(1): Show a0001c0006t0001g0001 a0003c0009t0003g0036 a0004c0008t0005g0033 a0005c0010t0002g0021	4	46	0.0870	16	c.153 others(35): Show c.1531+5336_1531+5351dupGATAGATAGATAGATA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	11/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66547343	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02647.hp2 NA18960.hp1 NA18964.hp2 HG02647.hp2 NA18960.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0024 a0001c0001t0025 a0001c0003t0011 a0001c0001t0024 a0001c0001t0025 a0001c0003t0011	a0001c0001t0024g0044 a0001c0001t0025g0045 a0001c0003t0011g0032 a0001c0001t0024g0044 a0001c0001t0025g0045 a0001c0003t0011g0032	3	46	0.0652	16	c.137 others(37): Show c.1375-26571_1375-26570insAAAAAAAAAAAAAAAA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	10/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66634572	G G	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0005 a0005	a0005c0010 a0005c0010	a0005c0010t0002 a0005c0010t0002	a0005c0010t0002g0021 a0005c0010t0002g0021	1	46	0.0217	16	c.128 others(37): Show c.1282-12804_1282-12789dupACACACACACACACAC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	9/17			chr10	TogoVar

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