Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CIT_chr12_119680791_119882320	119717838	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00733.hp2 HG01257.hp1 others(21): Show HG00408.hp2 HG00733.hp2 HG01257.hp1 HG01515.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG02083.hp1 HG02083.hp2 HG02165.hp2 HG02293.hp1 HG02523.hp2 HG02818.hp1 HG03834.hp2 HG04204.hp1 NA18612.hp2 NA18747.hp1 NA18939.hp1 NA18960.hp2 NA18981.hp2 NA18984.hp1 NA18984.hp2 NA19012.hp1 NA19068.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0023 a0002c0016 a0001c0001 a0001c0023 a0002c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0015 a0001c0023t0004 a0002c0016t0001	a0001c0001t0001g0049 a0001c0001t0001g0097 a0001c0001t0001g0121 others(21): Show a0001c0001t0001g0049 a0001c0001t0001g0097 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0126 a0001c0001t0001g0134 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0181 a0001c0001t0001g0200 a0001c0001t0001g0202 a0001c0001t0001g0206 a0001c0001t0001g0225 a0001c0001t0002g0110 a0001c0001t0002g0120 a0001c0001t0004g0146 a0001c0001t0004g0163 a0001c0001t0004g0194 a0001c0001t0006g0116 a0001c0001t0006g0119 a0001c0001t0015g0094 a0001c0023t0004g0059 a0002c0016t0001g0061	24	236	0.1017	17	c.416 others(34): Show c.4168+390_4168+406dupAAAAAAAAAAAAAAAAA	CIT	ENSG00000122966.18	transcript	ENST00000392521.7	protein_coding	32/47			chr12	TogoVar
CIT_chr12_119680791_119882320	119745374	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02280.hp1 HG03139.hp1 HG02109.hp2 HG02280.hp1 HG03139.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0210 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0008t0001g0210 a0001c0008t0001g0211 a0001c0008t0001g0212	3	236	0.0127	17	c.290 others(36): Show c.2905-2927_2905-2911dupTTTTTTTTTTTTTTTTT	CIT	ENSG00000122966.18	transcript	ENST00000392521.7	protein_coding	23/47			chr12	TogoVar
CKAP4_chr12_106232881_106253020	106237526	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp1 HG03942.hp2 NA18977.hp1 others(1): Show HG02622.hp1 HG03942.hp2 NA18977.hp1 NA19081.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0002 a0002c0002t0005 a0003c0003t0002 others(1): Show a0002c0002t0002 a0002c0002t0005 a0003c0003t0002 a0003c0003t0003	a0002c0002t0002g0002 a0002c0002t0005g0038 a0003c0003t0002g0010 others(1): Show a0002c0002t0002g0002 a0002c0002t0005g0038 a0003c0003t0002g0010 a0003c0003t0003g0043	4	418	0.0096	17	c.14 others(28): Show c.1497_*1498insTTTTTTTTTTTTTTTTT	CKAP4	ENSG00000136026.14	transcript	ENST00000378026.5	protein_coding		354		chr12	TogoVar
CLASP2_chr3_33491245_33723254	33506377	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	278	0.0036	17	c.431 others(36): Show c.4317+4180_4317+4181insTTTTTTTTTTTTTTTTT	CLASP2	ENSG00000163539.19	transcript	ENST00000682230.1	protein_coding	37/38			chr3	TogoVar
CLASP2_chr3_33491245_33723254	33568553	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02056.hp2 NA18987.hp2 HG02056.hp2 NA18987.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0021 a0001c0001t0002g0026 a0001c0001t0002g0021 a0001c0001t0002g0026	2	278	0.0072	17	c.276 others(36): Show c.2764-1836_2764-1820dupTTTTTTTTTTTTTTTTT	CLASP2	ENSG00000163539.19	transcript	ENST00000682230.1	protein_coding	26/38			chr3	TogoVar
CLASP2_chr3_33491245_33723254	33667406	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02258.hp1 HG02258.hp2 others(7): Show HG02145.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp2 HG02615.hp1 HG02922.hp1 HG03130.hp2 HG03209.hp1 HG03453.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0014 a0001c0003t0007 a0001c0001t0001 a0001c0001t0014 a0001c0003t0007	a0001c0001t0001g0132 a0001c0001t0001g0151 a0001c0001t0001g0153 others(7): Show a0001c0001t0001g0132 a0001c0001t0001g0151 a0001c0001t0001g0153 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0014g0158 a0001c0003t0007g0236	10	278	0.0360	17	c.645 others(34): Show c.645-3908_645-3892dupTTTTTTTTTTTTTTTTT	CLASP2	ENSG00000163539.19	transcript	ENST00000682230.1	protein_coding	6/38			chr3	TogoVar
CLASP2_chr3_33491245_33723254	33713012	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0253 a0001c0001t0002g0253	1	278	0.0036	17	c.195 others(34): Show c.195+4779_195+4795dupTTTTTTTTTTTTTTTTT	CLASP2	ENSG00000163539.19	transcript	ENST00000682230.1	protein_coding	1/38			chr3	TogoVar
CLASRP_chr19_45034045_45075956	45063436	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00558.hp1 others(22): Show HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00597.hp2 HG00733.hp2 HG00735.hp2 HG01934.hp2 HG01943.hp1 HG02074.hp1 HG02129.hp1 HG03654.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp1 NA18944.hp2 NA18948.hp1 NA18959.hp1 NA18961.hp1 NA18963.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA19004.hp2 NA19012.hp1 NA19085.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0015 a0003c0003 a0001c0001 a0001c0015 a0003c0003	a0001c0001t0001 a0001c0015t0001 a0003c0003t0001 a0001c0001t0001 a0001c0015t0001 a0003c0003t0001	a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0029 others(20): Show a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0054 a0001c0001t0001g0192 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0231 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0243 a0001c0001t0001g0254 a0001c0001t0001g0265 a0001c0001t0001g0270 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0289 a0001c0015t0001g0307 a0003c0003t0001g0214	25	364	0.0687	17	c.906 others(32): Show c.906-565_906-549dupTTTTTTTTTTTTTTTTT	CLASRP	ENSG00000104859.15	transcript	ENST00000221455.8	protein_coding	11/20		INFO_REALIGN_3_PRIME	chr19	TogoVar
CLCN3_chr4_169615578_169728673	169672220	T T	TAGATAGA others(10): Show TAGATAGATAGATAGATA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0027 a0001c0003t0003g0027	1	288	0.0035	17	c.161 others(34): Show c.161-7830_161-7829insAGATAGATAGATAGATA	CLCN3	ENSG00000109572.16	transcript	ENST00000513761.6	protein_coding	2/12			chr4	TogoVar
CLCN4_chrX_10151975_10242660	10153116	A A	ATATATAT others(10): Show ATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19009.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0214 a0001c0001t0002g0214	1	264	0.0038	17	c.-42 others(28): Show c.-4259_-4258insTATATATATATATATAT	CLCN4	ENSG00000073464.13	transcript	ENST00000380833.9	protein_coding		3858		chrX	TogoVar
CLCN4_chrX_10151975_10242660	10153118	A A	ATATATAT others(10): Show ATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0174 a0001c0001t0003g0174	1	264	0.0038	17	c.-42 others(28): Show c.-4257_-4256insTATATATATATATATAT	CLCN4	ENSG00000073464.13	transcript	ENST00000380833.9	protein_coding		3856		chrX	TogoVar
CLCN4_chrX_10151975_10242660	10191692	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02976.hp1 HG03130.hp1 HG02622.hp1 HG02976.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0032 a0001c0001t0002 a0001c0001t0006 a0001c0001t0032	a0001c0001t0002g0094 a0001c0001t0006g0064 a0001c0001t0032g0067 a0001c0001t0002g0094 a0001c0001t0006g0064 a0001c0001t0032g0067	3	264	0.0114	17	c.245 others(34): Show c.245-3207_245-3191dupTTTTTTTTTTTTTTTTT	CLCN4	ENSG00000073464.13	transcript	ENST00000380833.9	protein_coding	4/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
CLCN4_chrX_10151975_10242660	10209289	C C	CTCCCTCC others(10): Show CTCCCTCCCTCCCTTCCT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG03139.hp1 HG02809.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0060 a0001c0001t0005g0143 a0001c0001t0005g0060 a0001c0001t0005g0143	2	264	0.0076	17	c.138 others(34): Show c.1389+704_1389+705insCCCTCCCTTCCTTCCCT	CLCN4	ENSG00000073464.13	transcript	ENST00000380833.9	protein_coding	9/12		INFO_REALIGN_3_PRIME	chrX	TogoVar
CLCN5_chrX_49917596_50104230	49924145	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02976.hp2 HG06807.hp2 others(1): Show HG01081.hp2 HG02976.hp2 HG06807.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0170 a0001c0001t0005g0171 a0001c0001t0005g0172 others(1): Show a0001c0001t0005g0170 a0001c0001t0005g0171 a0001c0001t0005g0172 a0001c0001t0005g0173	4	175	0.0229	17	c.-12 others(34): Show c.-129+664_-129+680dupTTTTTTTTTTTTTTTTT	CLCN5	ENSG00000171365.17	transcript	ENST00000376091.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chrX	TogoVar
CLCN6_chr1_11801191_11848130	11827430	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03017.hp2 NA18970.hp1 HG03017.hp2 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0030 a0001c0001t0007 a0001c0001t0030	a0001c0001t0007g0038 a0001c0001t0030g0037 a0001c0001t0007g0038 a0001c0001t0030g0037	2	290	0.0069	17	c.840 others(32): Show c.840+216_840+232dupTTTTTTTTTTTTTTTTT	CLCN6	ENSG00000011021.23	transcript	ENST00000346436.11	protein_coding	10/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CLDN16_chr3_190383163_190417138	190392059	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02965.hp2 HG02738.hp1 HG02965.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0004 a0001c0001t0004 a0002c0002t0004	a0001c0001t0004g0076 a0002c0002t0004g0061 a0001c0001t0004g0076 a0002c0002t0004g0061	2	438	0.0046	17	c.114 others(34): Show c.114+3617_114+3633dupTTTTTTTTTTTTTTTTT	CLDN16	ENSG00000113946.4	transcript	ENST00000264734.3	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
CLDN19_chr1_42728093_42745236	42729447	A A	ATATATAT others(10): Show ATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03041.hp2 HG03491.hp1 NA18978.hp1 HG03041.hp2 HG03491.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0001 a0001c0001t0001g0012	3	428	0.0070	17	c.56 others(28): Show c.5638_*5639insATATATATATATATATA	CLDN19	ENSG00000164007.11	transcript	ENST00000296387.6	protein_coding		3645		chr1	TogoVar
CLDN19_chr1_42728093_42745236	42729449	A A	ATATATAT others(10): Show ATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02155.hp1 HG02258.hp2 HG02486.hp1 others(3): Show HG02155.hp1 HG02258.hp2 HG02486.hp1 NA18941.hp2 NA18959.hp1 NA18960.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	6	428	0.0140	17	c.56 others(28): Show c.5636_*5637insATATATATATATATATA	CLDN19	ENSG00000164007.11	transcript	ENST00000296387.6	protein_coding		3643		chr1	TogoVar
CLDN19_chr1_42728093_42745236	42729451	A A	AAAAATAT others(10): Show AAAAATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02080.hp2 NA19007.hp1 HG02080.hp2 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	428	0.0047	17	c.56 others(28): Show c.5634_*5635insATATATATATATATTTT	CLDN19	ENSG00000164007.11	transcript	ENST00000296387.6	protein_coding		3641		chr1	TogoVar
CLDN19_chr1_42728093_42745236	42729451	A A	AAATATAT others(10): Show AAATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp1 HG01517.hp1 HG03130.hp2 others(4): Show HG01175.hp1 HG01517.hp1 HG03130.hp2 HG04115.hp1 HG04115.hp2 NA18943.hp2 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0001 a0001c0001t0001g0012 a0001c0001t0001g0016	7	428	0.0164	17	c.56 others(28): Show c.5634_*5635insATATATATATATATATT	CLDN19	ENSG00000164007.11	transcript	ENST00000296387.6	protein_coding		3641		chr1	TogoVar
CLDN19_chr1_42728093_42745236	42729451	A A	ATATATAT others(10): Show ATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01071.hp2 HG01109.hp2 HG01515.hp2 others(3): Show HG01071.hp2 HG01109.hp2 HG01515.hp2 HG02148.hp2 HG03017.hp2 NA19010.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0019 a0001c0001t0001 a0002c0003t0019	a0001c0001t0001g0001 a0001c0001t0001g0016 a0002c0003t0019g0038 a0001c0001t0001g0001 a0001c0001t0001g0016 a0002c0003t0019g0038	6	428	0.0140	17	c.56 others(28): Show c.5634_*5635insATATATATATATATATA	CLDN19	ENSG00000164007.11	transcript	ENST00000296387.6	protein_coding		3641		chr1	TogoVar
CLDN7_chr17_7254903_7267478	7265112	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG01099.hp2 HG01169.hp2 others(6): Show HG00639.hp2 HG01099.hp2 HG01169.hp2 HG01943.hp1 HG01975.hp1 NA18942.hp2 NA18959.hp1 NA18977.hp1 NA20805.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0004 a0002c0002t0002 a0002c0002t0004	a0002c0002t0002g0002 a0002c0002t0004g0007 a0002c0002t0002g0002 a0002c0002t0004g0007	9	418	0.0215	17	c.-30 others(28): Show c.-3070_-3069insAAAAAAAAAAAAAAAAA	CLDN7	ENSG00000181885.18	transcript	ENST00000360325.11	protein_coding		2635		chr17	TogoVar
CLEC10A_chr17_7069537_7085251	7070600	A A	AAAAGAAA others(10): Show AAAAGAAAGAAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG04204.hp1 HG00280.hp1 HG04204.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0006 a0001c0003t0021 a0001c0002t0006 a0001c0003t0021	a0001c0002t0006g0008 a0001c0003t0021g0127 a0001c0002t0006g0008 a0001c0003t0021g0127	2	458	0.0044	17	c.44 others(28): Show c.4453_*4454insCTTTCTTTTCTTTCTTT	CLEC10A	ENSG00000132514.14	transcript	ENST00000416562.7	protein_coding		3936		chr17	TogoVar
CLEC16A_chr16_10939564_11187186	10986012	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01167.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0128 a0001c0001t0004g0129 a0001c0001t0004g0128 a0001c0001t0004g0129	2	274	0.0073	17	c.107 others(36): Show c.1071+3041_1071+3057dupTTTTTTTTTTTTTTTTT	CLEC16A	ENSG00000038532.17	transcript	ENST00000409790.6	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CLEC20A_chr1_178474240_178501964	178496064	A A	ACGGGAGG others(10): Show ACGGGAGGATGGATCTGT	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0119 a0003c0003t0001g0119	1	314	0.0032	17	c.40+ others(30): Show c.40+835_40+836insACAGATCCATCCTCCCG	CLEC20A	ENSG00000188585.10	transcript	ENST00000623247.3	protein_coding	1/7			chr1	TogoVar
CLEC2A_chr12_9908227_9937370	9922666	A A	AAGTGAAA others(10): Show AAGTGAAACATAAGAATT	intron_variant intron_variant	MODIFIER	HG02273.hp1 HG02273.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0112 a0002c0002t0001g0112	1	436	0.0023	17	c.140 others(32): Show c.140-451_140-435dupAATTCTTATGTTTCACT	CLEC2A	ENSG00000188393.9	transcript	ENST00000455827.2	protein_coding	2/4			chr12	TogoVar
CLEC4A_chr12_8118617_8143607	8134973	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTGTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01071.hp1 NA18964.hp1 HG01070.hp1 HG01071.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0303 a0001c0001t0010g0045 a0001c0001t0001g0303 a0001c0001t0010g0045	3	458	0.0066	17	c.299 others(32): Show c.299-607_299-606insTTTTTTTTGTTTTTTTT	CLEC4A	ENSG00000111729.15	transcript	ENST00000229332.12	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
CLEC4A_chr12_8118617_8143607	8134973	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTGTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0001 a0007c0008t0001	a0007c0008t0001g0267 a0007c0008t0001g0267	1	458	0.0022	17	c.299 others(32): Show c.299-607_299-606insTTTTTTTTTGTTTTTTT	CLEC4A	ENSG00000111729.15	transcript	ENST00000229332.12	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
CLEC4A_chr12_8118617_8143607	8134978	T T	TTTTTGTT others(10): Show TTTTTGTTTGTTTGTTTG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0064 a0001c0001t0011g0064	1	458	0.0022	17	c.299 others(32): Show c.299-607_299-606insTTTTGTTTGTTTGTTTG	CLEC4A	ENSG00000111729.15	transcript	ENST00000229332.12	protein_coding	3/5			chr12	TogoVar
CLEC4A_chr12_8118617_8143607	8135047	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 NA18965.hp2 NA19079.hp2 HG01175.hp1 NA18965.hp2 NA19079.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0007c0008 a0001c0001 a0007c0008	a0001c0001t0001 a0001c0001t0006 a0007c0008t0001 a0001c0001t0001 a0001c0001t0006 a0007c0008t0001	a0001c0001t0001g0296 a0001c0001t0006g0293 a0007c0008t0001g0267 a0001c0001t0001g0296 a0001c0001t0006g0293 a0007c0008t0001g0267	3	458	0.0066	17	c.299 others(32): Show c.299-532_299-516dupTTTTTTTTTTTTTTTTT	CLEC4A	ENSG00000111729.15	transcript	ENST00000229332.12	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
CLEC4C_chr12_7724383_7752375	7750822	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 NA18989.hp2 HG02257.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0187 a0001c0001t0003g0232 a0001c0001t0003g0187 a0001c0001t0003g0232	2	448	0.0045	17	c.-34 others(28): Show c.-3475_-3474insTTTTTTTTTTTTTTTTT	CLEC4C	ENSG00000198178.11	transcript	ENST00000360345.8	protein_coding		3448		chr12	TogoVar
CLEC4G_chr19_7723957_7737110	7732892	G G	GGAAAAAA others(10): Show GGAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	432	0.0023	17	c.-79 others(26): Show c.-791_-790insTTTTTTTTTTTTTTTTC	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		783		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	432	0.0023	17	c.-80 others(26): Show c.-805_-804insATATATTTTTTTTTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAAAA others(10): Show AAAAAAAAAAATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG02040.hp2 HG04115.hp1 others(2): Show HG00597.hp2 HG02040.hp2 HG04115.hp1 HG06807.hp1 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	5	432	0.0116	17	c.-80 others(26): Show c.-805_-804insATATATATTTTTTTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAAAA others(10): Show AAAAAAAAATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01258.hp1 HG02602.hp2 HG03491.hp2 others(1): Show HG01258.hp1 HG02602.hp2 HG03491.hp2 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	4	432	0.0093	17	c.-80 others(26): Show c.-805_-804insATATATATATTTTTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAATAT others(10): Show AAAAATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp2 NA18943.hp2 HG02071.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	2	432	0.0046	17	c.-80 others(26): Show c.-805_-804insATATATATATATATTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAATATAT others(10): Show AAATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	432	0.0023	17	c.-80 others(26): Show c.-805_-804insATATATATATATATATT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLHC1_chr2_55167547_55237293	55217552	A A	AAATATAT others(10): Show AAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0017 a0003c0003t0017	a0003c0003t0017g0058 a0003c0003t0017g0058	1	404	0.0025	17	c.365 others(32): Show c.365+258_365+259insATATATATATATATATT	CLHC1	ENSG00000162994.16	transcript	ENST00000401408.6	protein_coding	4/12			chr2	TogoVar
CLIC2_chrX_155271211_155339614	155297860	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0157 a0001c0001t0001g0157	1	258	0.0039	17	c.293 others(32): Show c.293+908_293+924dupTTTTTTTTTTTTTTTTT	CLIC2	ENSG00000155962.13	transcript	ENST00000369449.7	protein_coding	3/5			chrX	TogoVar
CLIC2_chrX_155271211_155339614	155297884	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00438.hp1 HG00609.hp1 others(57): Show HG00280.hp1 HG00438.hp1 HG00609.hp1 HG00735.hp1 HG00735.hp2 HG01071.hp1 HG01074.hp1 HG01123.hp2 HG01167.hp1 HG01256.hp1 HG01346.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01993.hp1 HG02004.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp2 HG02155.hp1 HG02273.hp2 HG02300.hp1 HG03239.hp1 HG03239.hp2 HG03490.hp1 HG03654.hp1 HG03834.hp2 HG03942.hp1 NA18941.hp1 NA18952.hp1 NA18965.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18987.hp2 NA18994.hp1 NA18995.hp1 NA19005.hp1 NA19007.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19065.hp2 NA19070.hp1 NA19076.hp1 NA19079.hp1 NA19085.hp1 NA19086.hp1 NA20752.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 others(53): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0037 a0001c0001t0001g0041 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0144 a0001c0001t0001g0146 a0001c0001t0001g0150	60	258	0.2326	17	c.293 others(32): Show c.293+900_293+901insCTTTTTTTTTTTTTTTT	CLIC2	ENSG00000155962.13	transcript	ENST00000369449.7	protein_coding	3/5			chrX	TogoVar
CLIC3_chr9_136989608_137001568	137001013	T T	TGACCTCG others(10): Show TGACCTCGGGGGCGGCGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02717.hp1 HG02109.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0010	2	398	0.0050	17	c.-44 others(28): Show c.-4471_-4470insCCGCCGCCCCCGAGGTC	CLIC3	ENSG00000169583.13	transcript	ENST00000494426.2	protein_coding		4446		chr9	TogoVar
CLIC3_chr9_136989608_137001568	137001030	A A	AGACCTCG others(10): Show AGACCTCGGGGGCGGCGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	398	0.0025	17	c.-44 others(28): Show c.-4488_-4487insCCGCCGCCCCCGAGGTC	CLIC3	ENSG00000169583.13	transcript	ENST00000494426.2	protein_coding		4463		chr9	TogoVar
CLIC5_chr6_45893456_46020860	45922823	A A	AGAGAGAG others(10): Show AGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0257 a0001c0001t0004g0257	1	340	0.0029	17	c.407 others(34): Show c.407-8415_407-8414insCTCTCTCTCTCTCTCTC	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	4/5			chr6	TogoVar
CLIC6_chr21_34663994_34723223	34692161	C C	CCACCTCT others(10): Show CCACCTCTGAGAAGGTGT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG04204.hp1 HG02683.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0068 a0001c0001t0006 a0001c0001t0068	a0001c0001t0006g0102 a0001c0001t0068g0045 a0001c0001t0006g0102 a0001c0001t0068g0045	2	312	0.0064	17	c.137 others(38): Show c.1375-15114_1375-15098dupTCTGAGAAGGTGTCACC	CLIC6	ENSG00000159212.13	transcript	ENST00000349499.3	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr21	TogoVar
CLIP1_chr12_122266469_122427669	122293002	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02258.hp2 HG02647.hp2 others(4): Show HG01884.hp1 HG02258.hp2 HG02647.hp2 HG02723.hp1 HG02970.hp2 HG03139.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0007 a0001c0001t0004 a0001c0001t0007	a0001c0001t0004g0003 a0001c0001t0004g0014 a0001c0001t0004g0016 others(4): Show a0001c0001t0004g0003 a0001c0001t0004g0014 a0001c0001t0004g0016 a0001c0001t0004g0022 a0001c0001t0007g0007 a0001c0001t0007g0011 a0001c0001t0007g0020	7	234	0.0299	17	c.359 others(36): Show c.3595-4478_3595-4462dupTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	20/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122299612	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02647.hp1 HG02723.hp1 others(5): Show HG02280.hp2 HG02647.hp1 HG02723.hp1 HG02970.hp2 HG03195.hp2 HG03516.hp2 NA18906.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 others(2): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0016 a0001c0010t0004	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0019 others(5): Show a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0019 a0001c0001t0004g0021 a0001c0001t0006g0227 a0001c0001t0007g0020 a0001c0001t0016g0032 a0001c0010t0004g0009	8	234	0.0342	17	c.359 others(38): Show c.3594+10133_3594+10149dupTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	20/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122330602	T T	TTTTTTTT others(10): Show TTTTTTTTTTGTTTTTTG	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0001 a0001c0001t0004g0001	1	234	0.0043	17	c.286 others(36): Show c.2868-2177_2868-2176insCAAAAAACAAAAAAAAA	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	15/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122379943	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02717.hp1 HG03453.hp1 HG02280.hp1 HG02717.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 a0001c0001t0001 a0001c0001t0006 a0001c0001t0010	a0001c0001t0001g0218 a0001c0001t0006g0222 a0001c0001t0010g0219 a0001c0001t0001g0218 a0001c0001t0006g0222 a0001c0001t0010g0219	3	234	0.0128	17	c.85+ others(30): Show c.85+424_85+425insTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	2/25			chr12	TogoVar
CLK4_chr5_178597664_178632050	178627217	A A	ACCACCCC others(10): Show ACCACCCCCCCCCCGCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	384	0.0026	17	c.-27 others(26): Show c.-273_-272insGGGCGGGGGGGGGGTGG	CLK4	ENSG00000113240.14	transcript	ENST00000316308.9	protein_coding		168		chr5	TogoVar
CLK4_chr5_178597664_178632050	178627223	C C	CCCCCCCC others(10): Show CCCCCCCCCGCCCCCCCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG00639.hp2 HG01074.hp1 others(13): Show HG00609.hp2 HG00639.hp2 HG01074.hp1 HG01168.hp2 HG01255.hp1 HG01346.hp1 HG01516.hp2 HG02015.hp2 HG02257.hp2 HG02451.hp1 HG06807.hp1 NA18612.hp1 NA18946.hp1 NA19043.hp1 NA19058.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0022 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0022 a0001c0001t0001g0040 a0001c0001t0001g0159 a0001c0001t0001g0168 a0001c0001t0001g0173 a0001c0001t0001g0180 a0001c0001t0001g0200	16	384	0.0417	17	c.-27 others(26): Show c.-279_-278insCGGGGGGGCGGGGGGGG	CLK4	ENSG00000113240.14	transcript	ENST00000316308.9	protein_coding		174		chr5	TogoVar

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