Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CREBBP_chr16_3720054_3885713	3849432	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	286	0.0035	17	c.798 others(32): Show c.798+848_798+864dupCACACACACACACACAC	CREBBP	ENSG00000005339.15	transcript	ENST00000262367.10	protein_coding	2/30			chr16	TogoVar
CREBBP_chr16_3720054_3885713	3849440	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02622.hp1 NA18943.hp1 HG02622.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0012 a0001c0001t0001 a0001c0002t0012	a0001c0001t0001g0109 a0001c0002t0012g0262 a0001c0001t0001g0109 a0001c0002t0012g0262	2	286	0.0070	17	c.798 others(32): Show c.798+840_798+856dupCACACACACACACACAC	CREBBP	ENSG00000005339.15	transcript	ENST00000262367.10	protein_coding	2/30			chr16	TogoVar
CREBBP_chr16_3720054_3885713	3849446	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0024 a0001c0024	a0001c0024t0003 a0001c0024t0003	a0001c0024t0003g0197 a0001c0024t0003g0197	1	286	0.0035	17	c.798 others(32): Show c.798+834_798+850dupCACACACACACACACAC	CREBBP	ENSG00000005339.15	transcript	ENST00000262367.10	protein_coding	2/30			chr16	TogoVar
CREBBP_chr16_3720054_3885713	3851860	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0027 a0001c0027	a0001c0027t0007 a0001c0027t0007	a0001c0027t0007g0007 a0001c0027t0007g0007	1	286	0.0035	17	c.86- others(30): Show c.86-868_86-852dupTTTTTTTTTTTTTTTTT	CREBBP	ENSG00000005339.15	transcript	ENST00000262367.10	protein_coding	1/30			chr16	TogoVar
CREBL2_chr12_12606876_12650108	12617643	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01934.hp1 NA19030.hp1 HG01934.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0126 a0001c0001t0002g0127	2	372	0.0054	17	c.15+ others(32): Show c.15+5478_15+5494dupTTTTTTTTTTTTTTTTT	CREBL2	ENSG00000111269.3	transcript	ENST00000228865.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr12	TogoVar
CREBL2_chr12_12606876_12650108	12647210	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0300 a0001c0001t0001g0300	1	372	0.0027	17	c.52 others(28): Show c.5212_*5213insAAAAAAAAAAAAAAAAG	CREBL2	ENSG00000111269.3	transcript	ENST00000228865.3	protein_coding		2103		chr12	TogoVar
CREBRF_chr5_173051352_173144284	173082014	T T	TTTTTTTT others(10): Show TTTTTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01081.hp2 HG01099.hp2 others(4): Show HG01069.hp1 HG01081.hp2 HG01099.hp2 HG01175.hp2 HG01993.hp2 HG03017.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0193 a0001c0001t0004g0194 a0001c0001t0004g0197 others(4): Show a0001c0001t0004g0193 a0001c0001t0004g0194 a0001c0001t0004g0197 a0001c0001t0004g0198 a0001c0001t0004g0199 a0001c0001t0004g0200 a0001c0001t0004g0204	7	292	0.0240	17	c.9+1 others(30): Show c.9+1246_9+1247insGTTTTTTTTTTTTTTTT	CREBRF	ENSG00000164463.12	transcript	ENST00000296953.6	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr5	TogoVar
CREBZF_chr11_85652990_85670129	85669001	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01358.hp1 HG02809.hp1 NA18989.hp2 HG01358.hp1 HG02809.hp1 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0038 a0001c0001t0001 a0001c0001t0038	a0001c0001t0001g0000 a0001c0001t0038g0000 a0001c0001t0001g0000 a0001c0001t0038g0000	3	392	0.0077	17	c.-41 others(28): Show c.-4143_-4127dupTTTTTTTTTTTTTTTTT	CREBZF	ENSG00000137504.15	transcript	ENST00000527447.2	protein_coding		3873		chr11	TogoVar
CREM_chr10_35121846_35217953	35149939	C C	CACACACA others(10): Show CACACACACACACACACA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	294	0.0034	17	c.168 others(34): Show c.168+1448_168+1449insACACACACACACACACA	CREM	ENSG00000095794.21	transcript	ENST00000685392.1	protein_coding	3/7			chr10	TogoVar
CREM_chr10_35121846_35217953	35194097	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0065 a0001c0001t0002g0065	1	294	0.0034	17	c.598 others(34): Show c.598+5720_598+5736dupAAAAAAAAAAAAAAAAA	CREM	ENSG00000095794.21	transcript	ENST00000685392.1	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CREM_chr10_35121846_35217953	35217753	G G	GACTTACA others(10): Show GACTTACAGCAGACCAGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0080 a0001c0001t0002g0080	1	294	0.0034	17	c.63 others(28): Show c.6355_*6356insACTTACAGCAGACCAGC	CREM	ENSG00000095794.21	transcript	ENST00000685392.1	protein_coding		4801		chr10	TogoVar
CRIM1_chr2_36350778_36556135	36474847	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0006 a0006	a0006c0014 a0006c0014	a0006c0014t0057 a0006c0014t0057	a0006c0014t0057g0181 a0006c0014t0057g0181	1	324	0.0031	17	c.992 others(34): Show c.992-2039_992-2023dupAAAAAAAAAAAAAAAAA	CRIM1	ENSG00000150938.10	transcript	ENST00000280527.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
CRIP2_chr14_105469821_105485162	105477095	G G	GGTGGGCC others(10): Show GGTGGGCCCAGCCTGCAT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0039 a0001c0002t0001g0039	1	316	0.0032	17	c.44- others(32): Show c.44-1169_44-1153dupTGGGCCCAGCCTGCATG	CRIP2	ENSG00000182809.11	transcript	ENST00000329146.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr14	TogoVar
CRISP2_chr6_49687359_49718543	49697404	G G	GTGTGTGT others(10): Show GTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0074 a0001c0002t0011g0074	1	410	0.0024	17	c.515 others(32): Show c.515+455_515+456insACACACACACACACACA	CRISP2	ENSG00000124490.14	transcript	ENST00000339139.5	protein_coding	8/9			chr6	TogoVar
CRISP2_chr6_49687359_49718543	49701513	T T	TATATATA others(10): Show TATATATATATACACACA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0191 a0001c0001t0002g0191	1	410	0.0024	17	c.67- others(30): Show c.67-730_67-729insTGTGTGTATATATATAT	CRISP2	ENSG00000124490.14	transcript	ENST00000339139.5	protein_coding	4/9			chr6	TogoVar
CRKL_chr22_20912407_20958747	20927128	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01258.hp1 HG01516.hp1 others(19): Show HG01074.hp1 HG01258.hp1 HG01516.hp1 HG02015.hp1 HG02040.hp2 HG02083.hp1 HG02258.hp1 HG02738.hp1 HG02809.hp1 HG02976.hp1 HG03834.hp2 HG04228.hp2 NA18522.hp1 NA18945.hp1 NA18948.hp2 NA18954.hp2 NA18964.hp2 NA18971.hp2 NA19068.hp1 NA19079.hp1 NA19091.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0036 others(1): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0036 a0001c0001t0037	a0001c0001t0001g0008 a0001c0001t0001g0254 a0001c0001t0001g0281 others(18): Show a0001c0001t0001g0008 a0001c0001t0001g0254 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0296 a0001c0001t0001g0313 a0001c0001t0001g0314 a0001c0001t0001g0315 a0001c0001t0001g0327 a0001c0001t0001g0329 a0001c0001t0001g0353 a0001c0001t0008g0325 a0001c0001t0036g0257 a0001c0001t0037g0358	22	370	0.0595	17	c.312 others(34): Show c.312-6643_312-6642insAAAAAAAAGAAAAAAAA	CRKL	ENSG00000099942.13	transcript	ENST00000354336.8	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr22	TogoVar
CRLF2_chrX_1185490_1217649	1191324	T T	TCTTTCTT others(10): Show TCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0141 a0001c0008t0001g0141	1	167	0.0060	17	c.853 others(32): Show c.853-181_853-165dupGAAAGAAAGAAAGAAAG	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1191332	T T	TCTTTCTT others(10): Show TCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0004 a0004	a0004c0012 a0004c0012	a0004c0012t0004 a0004c0012t0004	a0004c0012t0004g0128 a0004c0012t0004g0128	1	167	0.0060	17	c.853 others(32): Show c.853-173_853-172insGAAAGAAAGAAAGAAAG	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1191336	T T	TCTTTCTT others(10): Show TCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0015 a0015	a0015c0029 a0015c0029	a0015c0029t0003 a0015c0029t0003	a0015c0029t0003g0025 a0015c0029t0003g0025	1	167	0.0060	17	c.853 others(32): Show c.853-177_853-176insGAAAGAAAGAAAGAAAG	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	7/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1204171	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0010 a0010	a0010c0033 a0010c0033	a0010c0033t0001 a0010c0033t0001	a0010c0033t0001g0131 a0010c0033t0001g0131	1	167	0.0060	17	c.350 others(34): Show c.350-1637_350-1636insCACACACACACACACAC	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	3/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1204181	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0095 a0001c0002t0002g0095	1	167	0.0060	17	c.350 others(34): Show c.350-1647_350-1646insCACACACACACACACAC	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding	3/7			chrX	TogoVar
CRLF2_chrX_1185490_1217649	1213026	T T	TTCCCCTC others(10): Show TTCCCCTCCCCTCCCCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02451.hp2 HG02258.hp1 HG02451.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0003 a0001c0003t0001 a0001c0003t0003	a0001c0003t0001g0021 a0001c0003t0003g0066 a0001c0003t0001g0021 a0001c0003t0003g0066	2	167	0.0120	17	c.-39 others(26): Show c.-393_-392insGAGGGGAGGGGAGGGGA	CRLF2	ENSG00000205755.13	transcript	ENST00000400841.8	protein_coding		378		chrX	TogoVar
CRLF3_chr17_30777684_30829692	30779802	A A	AGTTTTTT others(10): Show AGTTTTTTGTTTTGTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG00639.hp2 HG00642.hp2 others(79): Show HG00544.hp1 HG00639.hp2 HG00642.hp2 HG00733.hp2 HG00738.hp1 HG01070.hp2 HG01081.hp2 HG01192.hp1 HG01346.hp2 HG01952.hp2 HG01981.hp2 HG01993.hp2 HG02056.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp1 HG02145.hp2 HG02273.hp2 HG02300.hp1 HG02486.hp1 HG02602.hp1 HG02647.hp2 HG02735.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG03041.hp1 HG03453.hp2 HG03471.hp1 HG03490.hp1 HG03492.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG03927.hp2 HG04115.hp1 HG04204.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18943.hp1 NA18947.hp1 NA18948.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18968.hp1 NA18973.hp1 NA18974.hp2 NA18977.hp1 NA18979.hp1 NA18986.hp2 NA18992.hp2 NA18993.hp1 NA18994.hp2 NA18998.hp1 NA19002.hp2 NA19010.hp1 NA19011.hp2 NA19056.hp2 NA19060.hp2 NA19063.hp1 NA19067.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp2 NA19085.hp2 NA19086.hp1 NA19087.hp1 NA19089.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0001c0004 a0003c0005 a0001c0002 a0001c0004 a0003c0005	a0001c0002t0002 a0001c0002t0008 a0001c0002t0009 others(6): Show a0001c0002t0002 a0001c0002t0008 a0001c0002t0009 a0001c0002t0013 a0001c0002t0014 a0001c0002t0015 a0001c0002t0016 a0001c0004t0004 a0003c0005t0002	a0001c0002t0002g0002 a0001c0002t0002g0003 a0001c0002t0002g0010 others(77): Show a0001c0002t0002g0002 a0001c0002t0002g0003 a0001c0002t0002g0010 a0001c0002t0002g0012 a0001c0002t0002g0013 a0001c0002t0002g0014 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0017 a0001c0002t0002g0018 a0001c0002t0002g0020 a0001c0002t0002g0021 a0001c0002t0002g0022 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0026 a0001c0002t0002g0027 a0001c0002t0002g0028 a0001c0002t0002g0029 a0001c0002t0002g0030 a0001c0002t0002g0031 a0001c0002t0002g0032 a0001c0002t0002g0033 a0001c0002t0002g0034 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0037 a0001c0002t0002g0038 a0001c0002t0002g0039 a0001c0002t0002g0040 a0001c0002t0002g0042 a0001c0002t0002g0044 a0001c0002t0002g0045 a0001c0002t0002g0046 a0001c0002t0002g0047 a0001c0002t0002g0048 a0001c0002t0002g0049 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0060 a0001c0002t0002g0061 a0001c0002t0002g0063 a0001c0002t0002g0064 a0001c0002t0002g0065 a0001c0002t0002g0066 a0001c0002t0002g0068 a0001c0002t0002g0070 a0001c0002t0002g0071 a0001c0002t0002g0072 a0001c0002t0002g0073 a0001c0002t0002g0074 a0001c0002t0008g0303 a0001c0002t0008g0310 a0001c0002t0008g0311 a0001c0002t0008g0312 a0001c0002t0009g0081 a0001c0002t0009g0309 a0001c0002t0009g0313 a0001c0002t0009g0314 a0001c0002t0013g0019 a0001c0002t0014g0043 a0001c0002t0015g0069 a0001c0002t0016g0067 a0001c0004t0004g0075 a0001c0004t0004g0076 a0001c0004t0004g0077 a0001c0004t0004g0078 a0001c0004t0004g0079 a0001c0004t0004g0080 a0003c0005t0002g0041 a0003c0005t0002g0059 a0003c0005t0002g0062	82	324	0.2531	17	c.43 others(28): Show c.4384_*4385insAAAACAAAACAAAAAAC	CRLF3	ENSG00000176390.12	transcript	ENST00000324238.7	protein_coding		2881		chr17	TogoVar
CRLS1_chr20_6001123_6045053	6011572	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01071.hp2 HG01099.hp2 others(5): Show HG00738.hp1 HG01071.hp2 HG01099.hp2 HG02145.hp1 HG02602.hp1 HG02809.hp1 NA18612.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0014 a0001c0001t0017 others(1): Show a0001c0001t0001 a0001c0001t0014 a0001c0001t0017 a0001c0001t0026	a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 others(5): Show a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0245 a0001c0001t0014g0294 a0001c0001t0017g0279 a0001c0001t0026g0169	8	366	0.0219	17	c.444 others(34): Show c.444+1678_444+1694dupTTTTTTTTTTTTTTTTT	CRLS1	ENSG00000088766.12	transcript	ENST00000378863.9	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
CROCC2_chr2_240901336_240998311	240906684	G G	GGCACCTT others(10): Show GGCACCTTCCTGGCTCCC	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0010 a0010	a0010c0009 a0010c0009	a0010c0009t0002 a0010c0009t0002	a0010c0009t0002g0005 a0010c0009t0002g0005	1	350	0.0029	17	c.78+ others(29): Show c.78+95_78+111dupCACCTTCCTGGCTCCCG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923611	C C	CCCCCACA others(10): Show CCCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0340 a0001c0001t0004g0340	1	350	0.0029	17	c.488 others(32): Show c.488+982_488+983insTCCCCACACTAACCCAG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923628	C C	CCCCCACA others(10): Show CCCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0054 a0054	a0054c0036 a0054c0036	a0054c0036t0001 a0054c0036t0001	a0054c0036t0001g0231 a0054c0036t0001g0231	1	350	0.0029	17	c.488 others(34): Show c.488+1010_488+1026dupAACCCAGTCCCCACACT	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923712	A A	AGTCCCCA others(10): Show AGTCCCCACACTATCCCG	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02809.hp1 HG03209.hp2 others(2): Show HG02109.hp2 HG02809.hp1 HG03209.hp2 HG03225.hp1 NA18522.hp2	a0012 a0013 a0024 a0012 a0013 a0024	a0012c0013 a0013c0076 a0024c0077 a0012c0013 a0013c0076 a0024c0077	a0012c0013t0001 a0013c0076t0001 a0024c0077t0001 a0012c0013t0001 a0013c0076t0001 a0024c0077t0001	a0012c0013t0001g0106 a0012c0013t0001g0121 a0012c0013t0001g0123 others(2): Show a0012c0013t0001g0106 a0012c0013t0001g0121 a0012c0013t0001g0123 a0013c0076t0001g0105 a0024c0077t0001g0111	5	350	0.0143	17	c.488 others(34): Show c.488+1068_488+1069insTCCCCACACTATCCCGG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923714	C C	CCCCCCAC others(10): Show CCCCCCACACTATCCCGG	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0020 a0020	a0020c0026 a0020c0026	a0020c0026t0001 a0020c0026t0001	a0020c0026t0001g0046 a0020c0026t0001g0046	1	350	0.0029	17	c.488 others(34): Show c.488+1080_488+1081insTCCCGGCCCCCACACTA	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923799	A A	AGCCCCCA others(10): Show AGCCCCCACACTAACCCG	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0159 a0001c0001t0003g0159	1	350	0.0029	17	c.488 others(34): Show c.488+1161_488+1177dupACACTAACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923801	C C	CCCCCACA others(10): Show CCCCCACACTGACCCAGT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01167.hp2 HG02071.hp2 others(7): Show HG00438.hp1 HG01167.hp2 HG02071.hp2 HG02129.hp2 NA18948.hp2 NA18963.hp2 NA18969.hp2 NA19056.hp2 NA19080.hp2 NA19088.hp1	a0001 a0002 a0008 others(1): Show a0001 a0002 a0008 a0062	a0001c0022 a0002c0002 a0002c0011 others(2): Show a0001c0022 a0002c0002 a0002c0011 a0008c0008 a0062c0095	a0001c0022t0002 a0002c0002t0002 a0002c0011t0002 others(2): Show a0001c0022t0002 a0002c0002t0002 a0002c0011t0002 a0008c0008t0002 a0062c0095t0002	a0001c0022t0002g0322 a0001c0022t0002g0343 a0002c0002t0002g0328 others(7): Show a0001c0022t0002g0322 a0001c0022t0002g0343 a0002c0002t0002g0328 a0002c0011t0002g0243 a0002c0011t0002g0297 a0002c0011t0002g0332 a0008c0008t0002g0251 a0008c0008t0002g0279 a0008c0008t0002g0330 a0062c0095t0002g0298	10	350	0.0286	17	c.488 others(34): Show c.488+1165_488+1166insGACCCAGTCCCCACACT	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923836	C C	CCCCCCAC others(10): Show CCCCCCACACTAACCCGG	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0045 a0045	a0045c0064 a0045c0064	a0045c0064t0001 a0045c0064t0001	a0045c0064t0001g0179 a0045c0064t0001g0179	1	350	0.0029	17	c.488 others(34): Show c.488+1197_488+1213dupACACTAACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923847	A A	AACCCAGC others(10): Show AACCCAGCCCCCACACTG	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02027.hp1 HG02056.hp2 others(4): Show HG01952.hp2 HG02027.hp1 HG02056.hp2 HG02300.hp2 NA18954.hp1 NA18965.hp1 NA20300.hp2	a0004 a0006 a0009 others(2): Show a0004 a0006 a0009 a0028 a0029	a0004c0050 a0006c0007 a0009c0010 others(2): Show a0004c0050 a0006c0007 a0009c0010 a0028c0047 a0029c0049	a0004c0050t0003 a0006c0007t0001 a0009c0010t0001 others(2): Show a0004c0050t0003 a0006c0007t0001 a0009c0010t0001 a0028c0047t0001 a0029c0049t0001	a0004c0050t0003g0218 a0006c0007t0001g0193 a0006c0007t0001g0194 others(4): Show a0004c0050t0003g0218 a0006c0007t0001g0193 a0006c0007t0001g0194 a0009c0010t0001g0200 a0009c0010t0001g0230 a0028c0047t0001g0202 a0029c0049t0001g0198	7	350	0.0200	17	c.488 others(34): Show c.488+1206_488+1207insAGCCCCCACACTGACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240923921	A A	AGCCCCCA others(10): Show AGCCCCCACACTGACCCG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0057 a0057	a0057c0031 a0057c0031	a0057c0031t0001 a0057c0031t0001	a0057c0031t0001g0107 a0057c0031t0001g0107	1	350	0.0029	17	c.488 others(34): Show c.488+1287_488+1288insGACCCGGCCCCCACACT	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924095	A A	AGCCCCCA others(10): Show AGCCCCCACACTAACCCG	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0002 a0002c0011t0002	a0002c0011t0002g0324 a0002c0011t0002g0324	1	350	0.0029	17	c.488 others(34): Show c.488+1456_488+1457insACACTAACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924126	A A	AACCCGGC others(10): Show AACCCGGCCCCCACACTG	intron_variant intron_variant	MODIFIER	NA18952.hp2 NA18952.hp2	a0010 a0010	a0010c0009 a0010c0009	a0010c0009t0001 a0010c0009t0001	a0010c0009t0001g0089 a0010c0009t0001g0089	1	350	0.0029	17	c.488 others(34): Show c.488+1485_488+1486insGGCCCCCACACTGACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924186	C C	CCCCCACA others(10): Show CCCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0024 a0024	a0024c0077 a0024c0077	a0024c0077t0001 a0024c0077t0001	a0024c0077t0001g0111 a0024c0077t0001g0111	1	350	0.0029	17	c.489 others(34): Show c.489-1524_489-1523insAGTCCCCACACTAACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924215	A A	ACCCAGTC others(10): Show ACCCAGTCCCCACACTAT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01943.hp1 HG01074.hp2 HG01943.hp1	a0002 a0045 a0002 a0045	a0002c0002 a0045c0064 a0002c0002 a0045c0064	a0002c0002t0001 a0045c0064t0001 a0002c0002t0001 a0045c0064t0001	a0002c0002t0001g0181 a0045c0064t0001g0179 a0002c0002t0001g0181 a0045c0064t0001g0179	2	350	0.0057	17	c.489 others(34): Show c.489-1506_489-1505insAGTCCCCACACTATCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924238	C C	CCCCCACA others(10): Show CCCCCACACTAACCCAGT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG03492.hp1 HG00323.hp1 HG03492.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0302 a0002c0002t0002g0336 a0002c0002t0002g0302 a0002c0002t0002g0336	2	350	0.0057	17	c.489 others(34): Show c.489-1472_489-1471insAGTCCCCACACTAACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924340	A A	AGTCCCCA others(10): Show AGTCCCCACACTAACCCG	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0002 a0002c0011t0002	a0002c0011t0002g0324 a0002c0011t0002g0324	1	350	0.0029	17	c.489 others(34): Show c.489-1383_489-1382insTCCCCACACTAACCCGG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924342	C C	CCCCCCAC others(10): Show CCCCCCACACTAACCCAG	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0012 a0012	a0012c0013 a0012c0013	a0012c0013t0001 a0012c0013t0001	a0012c0013t0001g0124 a0012c0013t0001g0124	1	350	0.0029	17	c.489 others(34): Show c.489-1378_489-1377insCACACTAACCCAGCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924525	A A	AACCCAGT others(10): Show AACCCAGTCCCCACACTG	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02015.hp2 NA18944.hp1 others(8): Show HG00558.hp1 HG02015.hp2 NA18944.hp1 NA18952.hp2 NA18966.hp2 NA18979.hp2 NA18986.hp1 NA19000.hp2 NA19002.hp2 NA19005.hp2 NA19056.hp1	a0007 a0010 a0050 a0007 a0010 a0050	a0007c0006 a0010c0009 a0050c0039 a0007c0006 a0010c0009 a0050c0039	a0007c0006t0001 a0007c0006t0003 a0010c0009t0001 others(2): Show a0007c0006t0001 a0007c0006t0003 a0010c0009t0001 a0010c0009t0005 a0050c0039t0003	a0007c0006t0001g0088 a0007c0006t0003g0002 a0010c0009t0001g0087 others(6): Show a0007c0006t0001g0088 a0007c0006t0003g0002 a0010c0009t0001g0087 a0010c0009t0001g0089 a0010c0009t0001g0090 a0010c0009t0001g0091 a0010c0009t0001g0092 a0010c0009t0005g0001 a0050c0039t0003g0214	11	350	0.0314	17	c.489 others(34): Show c.489-1195_489-1194insAGTCCCCACACTGACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924565	A A	AGCCCCCA others(10): Show AGCCCCCACACTAACCCG	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0002 a0002	a0002c0012 a0002c0012	a0002c0012t0002 a0002c0012t0002	a0002c0012t0002g0250 a0002c0012t0002g0250	1	350	0.0029	17	c.489 others(34): Show c.489-1153_489-1152insACACTAACCCGGCCCCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924596	A A	AACCCAGC others(10): Show AACCCAGCCCCCACACTG	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0233 a0006c0007t0001g0233	1	350	0.0029	17	c.489 others(34): Show c.489-1124_489-1123insAGCCCCCACACTGACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924631	A A	AATCCGGC others(10): Show AATCCGGCCCCCACACTG	intron_variant intron_variant	MODIFIER	HG02027.hp1 NA18945.hp1 NA18962.hp1 others(5): Show HG02027.hp1 NA18945.hp1 NA18962.hp1 NA18964.hp1 NA18969.hp1 NA18983.hp1 NA19064.hp2 NA19087.hp2	a0006 a0009 a0021 a0006 a0009 a0021	a0006c0007 a0009c0010 a0021c0019 a0006c0007 a0009c0010 a0021c0019	a0006c0007t0001 a0006c0007t0003 a0009c0010t0001 others(2): Show a0006c0007t0001 a0006c0007t0003 a0009c0010t0001 a0009c0010t0003 a0021c0019t0001	a0006c0007t0001g0093 a0006c0007t0001g0094 a0006c0007t0003g0209 others(5): Show a0006c0007t0001g0093 a0006c0007t0001g0094 a0006c0007t0003g0209 a0009c0010t0001g0223 a0009c0010t0001g0230 a0009c0010t0003g0211 a0009c0010t0003g0229 a0021c0019t0001g0227	8	350	0.0229	17	c.489 others(34): Show c.489-1093_489-1092insATCCGGCCCCCACACTG	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924879	C C	CCCCCACA others(10): Show CCCCCACACTGACCCAGT	intron_variant intron_variant	MODIFIER	NA19066.hp2 NA19087.hp2 NA19066.hp2 NA19087.hp2	a0006 a0021 a0006 a0021	a0006c0007 a0021c0019 a0006c0007 a0021c0019	a0006c0007t0001 a0021c0019t0001 a0006c0007t0001 a0021c0019t0001	a0006c0007t0001g0221 a0021c0019t0001g0227 a0006c0007t0001g0221 a0021c0019t0001g0227	2	350	0.0057	17	c.489 others(32): Show c.489-831_489-830insAGTCCCCACACTGACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924929	G G	GTCCCCCA others(10): Show GTCCCCCACACTAACCCA	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0057 a0057	a0057c0031 a0057c0031	a0057c0031t0001 a0057c0031t0001	a0057c0031t0001g0107 a0057c0031t0001g0107	1	350	0.0029	17	c.489 others(32): Show c.489-795_489-794insTCCCCCACACTAACCCA	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31			chr2	TogoVar
CROCC2_chr2_240901336_240998311	240924993	G G	GACCCAGC others(10): Show GACCCAGCCCCCACACTA	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0017 a0017	a0017c0041 a0017c0041	a0017c0041t0003 a0017c0041t0003	a0017c0041t0003g0163 a0017c0041t0003g0163	1	350	0.0029	17	c.489 others(32): Show c.489-727_489-726insAGCCCCCACACTAACCC	CROCC2	ENSG00000226321.6	transcript	ENST00000690015.1	protein_coding	4/31		INFO_REALIGN_3_PRIME	chr2	TogoVar
CRPPA_chr7_16082525_16426538	16303477	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 NA18949.hp1 HG02615.hp1 NA18949.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0007 a0002c0002t0041 a0001c0001t0007 a0002c0002t0041	a0001c0001t0007g0154 a0002c0002t0041g0248 a0001c0001t0007g0154 a0002c0002t0041g0248	2	290	0.0069	17	c.790 others(34): Show c.790-2028_790-2012dupTTTTTTTTTTTTTTTTT	CRPPA	ENSG00000214960.11	transcript	ENST00000407010.7	protein_coding	4/9			chr7	TogoVar
CRPPA_chr7_16082525_16426538	16389913	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03486.hp2 NA19070.hp2 HG03225.hp2 HG03486.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0009 a0001c0001t0023 a0001c0001t0002 a0001c0001t0009 a0001c0001t0023	a0001c0001t0002g0162 a0001c0001t0009g0163 a0001c0001t0023g0175 a0001c0001t0002g0162 a0001c0001t0009g0163 a0001c0001t0023g0175	3	290	0.0103	17	c.535 others(36): Show c.535-13673_535-13672insTTTTTTTTTTTTTTTTT	CRPPA	ENSG00000214960.11	transcript	ENST00000407010.7	protein_coding	2/9			chr7	TogoVar

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