Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CSMD1_chr8_2930361_4999914	3439309	A A	ATATATAT others(10): Show ATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0102 a0001c0001t0002g0102	1	45	0.0222	17	c.156 others(38): Show c.1561+29402_1561+29403insAAAAATATATATATATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	12/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3643700	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0046 a0001c0046	a0001c0046t0073 a0001c0046t0073	a0001c0046t0073g0091 a0001c0046t0073g0091	1	41	0.0244	17	c.101 others(38): Show c.1010-26920_1010-26904dupTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3660962	A A	AGCAGAGG others(10): Show AGCAGAGGTGAGGGATTG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0078 a0001c0019t0078	a0001c0019t0078g0105 a0001c0019t0078g0105	1	126	0.0079	17	c.101 others(38): Show c.1010-44182_1010-44166dupCAATCCCTCACCTCTGC	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3670739	G G	GTATGCAT others(10): Show GTATGCATAGGGGATATA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00438.hp2 HG00735.hp1 others(10): Show HG00423.hp2 HG00438.hp2 HG00735.hp1 HG01071.hp1 HG02615.hp2 HG02683.hp1 HG02723.hp2 HG03209.hp1 HG04204.hp1 HG04228.hp1 HG04228.hp2 NA18979.hp2 NA19043.hp1	a0001 a0002 a0005 others(2): Show a0001 a0002 a0005 a0011 a0034	a0001c0001 a0001c0004 a0001c0020 others(10): Show a0001c0001 a0001c0004 a0001c0020 a0001c0021 a0001c0080 a0001c0081 a0001c0093 a0002c0012 a0002c0041 a0002c0089 a0005c0065 a0011c0016 a0034c0055	a0001c0001t0002 a0001c0004t0063 a0001c0020t0018 others(10): Show a0001c0001t0002 a0001c0004t0063 a0001c0020t0018 a0001c0021t0005 a0001c0080t0041 a0001c0081t0036 a0001c0093t0009 a0002c0012t0016 a0002c0041t0025 a0002c0089t0001 a0005c0065t0023 a0011c0016t0048 a0034c0055t0034	a0001c0001t0002g0125 a0001c0004t0063g0095 a0001c0020t0018g0065 others(10): Show a0001c0001t0002g0125 a0001c0004t0063g0095 a0001c0020t0018g0065 a0001c0021t0005g0012 a0001c0080t0041g0025 a0001c0081t0036g0030 a0001c0093t0009g0007 a0002c0012t0016g0088 a0002c0041t0025g0018 a0002c0089t0001g0037 a0005c0065t0023g0050 a0011c0016t0048g0106 a0034c0055t0034g0047	13	49	0.2653	17	c.100 others(38): Show c.1009+37674_1009+37675insTATATCCCCTATGCATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3670739	G G	GTATGTAT others(10): Show GTATGTATAGGGGATATA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02572.hp2 HG02723.hp1 HG02055.hp2 HG02572.hp2 HG02723.hp1	a0004 a0008 a0021 a0004 a0008 a0021	a0004c0057 a0008c0029 a0021c0038 a0004c0057 a0008c0029 a0021c0038	a0004c0057t0080 a0008c0029t0013 a0021c0038t0075 a0004c0057t0080 a0008c0029t0013 a0021c0038t0075	a0004c0057t0080g0075 a0008c0029t0013g0054 a0021c0038t0075g0067 a0004c0057t0080g0075 a0008c0029t0013g0054 a0021c0038t0075g0067	3	39	0.0769	17	c.100 others(38): Show c.1009+37674_1009+37675insTATATCCCCTATACATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3671031	C C	CATATGGG others(10): Show CATATGGGATATATATGT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0038 a0038	a0038c0104 a0038c0104	a0038c0104t0069 a0038c0104t0069	a0038c0104t0069g0058 a0038c0104t0069g0058	1	50	0.0200	17	c.100 others(38): Show c.1009+37366_1009+37382dupACATATATATCCCATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3671047	G G	GTATATGG others(10): Show GTATATGGGATATATATA	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02258.hp1 HG02886.hp1 HG01261.hp2 HG02258.hp1 HG02886.hp1	a0001 a0015 a0001 a0015	a0001c0039 a0001c0114 a0015c0063 a0001c0039 a0001c0114 a0015c0063	a0001c0039t0064 a0001c0114t0003 a0015c0063t0010 a0001c0039t0064 a0001c0114t0003 a0015c0063t0010	a0001c0039t0064g0080 a0001c0114t0003g0119 a0015c0063t0010g0045 a0001c0039t0064g0080 a0001c0114t0003g0119 a0015c0063t0010g0045	3	126	0.0238	17	c.100 others(38): Show c.1009+37366_1009+37367insTATATATATCCCATATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3709680	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01123.hp2 HG01934.hp2 others(6): Show HG01074.hp2 HG01123.hp2 HG01934.hp2 HG02056.hp2 HG02683.hp2 HG03579.hp2 NA18522.hp1 NA18522.hp2 NA20129.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0032 a0035	a0001c0003 a0001c0071 a0001c0111 others(6): Show a0001c0003 a0001c0071 a0001c0111 a0002c0037 a0002c0072 a0003c0056 a0003c0099 a0032c0024 a0035c0023	a0001c0003t0008 a0001c0071t0067 a0001c0111t0045 others(6): Show a0001c0003t0008 a0001c0071t0067 a0001c0111t0045 a0002c0037t0009 a0002c0072t0003 a0003c0056t0062 a0003c0099t0012 a0032c0024t0077 a0035c0023t0001	a0001c0003t0008g0053 a0001c0071t0067g0115 a0001c0111t0045g0063 others(6): Show a0001c0003t0008g0053 a0001c0071t0067g0115 a0001c0111t0045g0063 a0002c0037t0009g0046 a0002c0072t0003g0066 a0003c0056t0062g0072 a0003c0099t0012g0020 a0032c0024t0077g0104 a0035c0023t0001g0052	9	45	0.2000	17	c.932 others(34): Show c.932-1206_932-1190dupAAAAAAAAAAAAAAAAA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	6/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3714561	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG03130.hp1 HG03195.hp2 others(2): Show HG02922.hp1 HG03130.hp1 HG03195.hp2 NA18971.hp2 NA19074.hp1	a0001 a0002 a0022 others(2): Show a0001 a0002 a0022 a0029 a0036	a0001c0026 a0002c0076 a0022c0062 others(2): Show a0001c0026 a0002c0076 a0022c0062 a0029c0027 a0036c0095	a0001c0026t0007 a0002c0076t0039 a0022c0062t0057 others(2): Show a0001c0026t0007 a0002c0076t0039 a0022c0062t0057 a0029c0027t0003 a0036c0095t0002	a0001c0026t0007g0093 a0002c0076t0039g0014 a0022c0062t0057g0062 others(2): Show a0001c0026t0007g0093 a0002c0076t0039g0014 a0022c0062t0057g0062 a0029c0027t0003g0099 a0036c0095t0002g0124	5	14	0.3571	17	c.932 others(34): Show c.932-6087_932-6071dupTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	6/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3926092	C C	CACACACA others(10): Show CACACACACAAACACCAT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0018 a0001c0020t0018	a0001c0020t0018g0065 a0001c0020t0018g0065	1	125	0.0080	17	c.818 others(36): Show c.818+71810_818+71811insATGGTGTTTGTGTGTGT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	5/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4042815	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02683.hp2 HG06807.hp1 HG02647.hp1 HG02683.hp2 HG06807.hp1	a0002 a0004 a0002 a0004	a0002c0035 a0002c0037 a0004c0058 a0002c0035 a0002c0037 a0004c0058	a0002c0035t0047 a0002c0037t0009 a0004c0058t0056 a0002c0035t0047 a0002c0037t0009 a0004c0058t0056	a0002c0035t0047g0076 a0002c0037t0009g0046 a0004c0058t0056g0117 a0002c0035t0047g0076 a0002c0037t0009g0046 a0004c0058t0056g0117	3	25	0.1200	17	c.416 others(36): Show c.416-10733_416-10717dupTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	3/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4051866	T T	TTCTTTCC others(10): Show TTCTTTCCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03516.hp2 HG03579.hp1 HG02965.hp1 HG03516.hp2 HG03579.hp1	a0007 a0024 a0030 a0007 a0024 a0030	a0007c0116 a0024c0052 a0030c0106 a0007c0116 a0024c0052 a0030c0106	a0007c0116t0004 a0024c0052t0049 a0030c0106t0014 a0007c0116t0004 a0024c0052t0049 a0030c0106t0014	a0007c0116t0004g0039 a0024c0052t0049g0098 a0030c0106t0014g0042 a0007c0116t0004g0039 a0024c0052t0049g0098 a0030c0106t0014g0042	3	126	0.0238	17	c.416 others(36): Show c.416-19768_416-19767insGAGAAAGAAAGGAAAGA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	3/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4441095	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01243.hp2 HG01934.hp2 others(11): Show HG01071.hp2 HG01243.hp2 HG01934.hp2 HG02280.hp2 HG02615.hp1 HG02683.hp1 HG02723.hp2 HG02886.hp2 HG02965.hp1 HG03017.hp2 NA18984.hp2 NA18995.hp1 NA18995.hp2 NA19060.hp1	a0001 a0002 a0003 others(7): Show a0001 a0002 a0003 a0004 a0005 a0014 a0019 a0024 a0026 a0037	a0001c0003 a0001c0007 a0001c0021 others(11): Show a0001c0003 a0001c0007 a0001c0021 a0001c0047 a0001c0109 a0002c0078 a0003c0099 a0004c0034 a0005c0065 a0014c0098 a0019c0082 a0024c0052 a0026c0100 a0037c0009	a0001c0003t0011 a0001c0007t0001 a0001c0021t0005 others(11): Show a0001c0003t0011 a0001c0007t0001 a0001c0021t0005 a0001c0047t0012 a0001c0109t0037 a0002c0078t0044 a0003c0099t0012 a0004c0034t0029 a0005c0065t0023 a0014c0098t0027 a0019c0082t0051 a0024c0052t0049 a0026c0100t0016 a0037c0009t0001	a0001c0003t0011g0026 a0001c0007t0001g0035 a0001c0021t0005g0012 others(11): Show a0001c0003t0011g0026 a0001c0007t0001g0035 a0001c0021t0005g0012 a0001c0047t0012g0024 a0001c0109t0037g0013 a0002c0078t0044g0064 a0003c0099t0012g0020 a0004c0034t0029g0038 a0005c0065t0023g0050 a0014c0098t0027g0019 a0019c0082t0051g0097 a0024c0052t0049g0098 a0026c0100t0016g0121 a0037c0009t0001g0002	14	45	0.3111	17	c.303 others(36): Show c.303-21047_303-21031dupAAAAAAAAAAAAAAAAA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4455929	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0019 a0001c0003t0019	a0001c0003t0019g0107 a0001c0003t0019g0107	1	5	0.2000	17	c.303 others(36): Show c.303-35881_303-35865dupTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4578332	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02615.hp1 HG02683.hp1 HG02486.hp1 HG02615.hp1 HG02683.hp1	a0001 a0017 a0019 a0001 a0017 a0019	a0001c0021 a0017c0101 a0019c0082 a0001c0021 a0017c0101 a0019c0082	a0001c0021t0005 a0017c0101t0008 a0019c0082t0051 a0001c0021t0005 a0017c0101t0008 a0019c0082t0051	a0001c0021t0005g0012 a0017c0101t0008g0023 a0019c0082t0051g0097 a0001c0021t0005g0012 a0017c0101t0008g0023 a0019c0082t0051g0097	3	25	0.1200	17	c.302 others(36): Show c.302+58993_302+59009dupAAAAAAAAAAAAAAAAA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4841911	C C	CAAACAAA others(10): Show CAAACAAAACAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02647.hp1 NA19060.hp1 HG00423.hp2 HG02647.hp1 NA19060.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0007 a0002c0089 a0004c0058 a0001c0007 a0002c0089 a0004c0058	a0001c0007t0001 a0002c0089t0001 a0004c0058t0056 a0001c0007t0001 a0002c0089t0001 a0004c0058t0056	a0001c0007t0001g0035 a0002c0089t0001g0037 a0004c0058t0056g0117 a0001c0007t0001g0035 a0002c0089t0001g0037 a0004c0058t0056g0117	3	39	0.0769	17	c.85+ others(36): Show c.85+152420_85+152421insTTTTTTTTGTTTTGTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	1/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4912135	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0006 a0006	a0006c0067 a0006c0067	a0006c0067t0059 a0006c0067t0059	a0006c0067t0059g0079 a0006c0067t0059g0079	1	89	0.0112	17	c.85+ others(34): Show c.85+82196_85+82197insCTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	1/69			chr8	TogoVar
CSMD3_chr8_112217928_113441939	112747962	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0006 a0002c0003t0006	a0002c0003t0006g0009 a0002c0003t0006g0009	1	25	0.0400	17	c.197 others(38): Show c.1972+52183_1972+52199dupTTTTTTTTTTTTTTTTT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	13/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113153020	A A	AGAAAAGA others(10): Show AGAAAAGAGAAAAGAAAT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0004 a0001c0006t0004	a0001c0006t0004g0060 a0001c0006t0004g0060	1	78	0.0128	17	c.709 others(36): Show c.709+20701_709+20702insATTTCTTTTCTCTTTTC	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	4/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113153101	A A	AAAAGAAA others(10): Show AAAAGAAAGAAAGAAAAG	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02970.hp2 HG02976.hp2 HG02895.hp2 HG02970.hp2 HG02976.hp2	a0002 a0013 a0014 a0002 a0013 a0014	a0002c0003 a0013c0018 a0014c0025 a0002c0003 a0013c0018 a0014c0025	a0002c0003t0006 a0013c0018t0003 a0014c0025t0003 a0002c0003t0006 a0013c0018t0003 a0014c0025t0003	a0002c0003t0006g0009 a0013c0018t0003g0071 a0014c0025t0003g0052 a0002c0003t0006g0009 a0013c0018t0003g0071 a0014c0025t0003g0052	3	50	0.0600	17	c.709 others(36): Show c.709+20620_709+20621insCTTTTCTTTCTTTCTTT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	4/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113328735	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0028 a0004c0004t0001g0028	1	24	0.0417	17	c.179 others(36): Show c.179-13959_179-13943dupAAAAAAAAAAAAAAAAA	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	1/70			chr8	TogoVar
CSNK1A1_chr5_149487982_149556439	149542692	A A	ATATGTAT others(10): Show ATATGTATATATATATAT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0345 a0001c0001t0002g0345	1	244	0.0041	17	c.230 others(34): Show c.230+7382_230+7383insATATATATATATACATA	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1A1_chr5_149487982_149556439	149542693	T T	TATGTATA others(10): Show TATGTATATATATATATA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA19240.hp2 NA18906.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0373 a0001c0001t0002g0377 a0001c0001t0002g0373 a0001c0001t0002g0377	2	381	0.0052	17	c.230 others(34): Show c.230+7381_230+7382insTATATATATATATACAT	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1G1_chr15_64160525_64361173	64229902	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03130.hp2 NA18942.hp2 HG03130.hp2 NA18942.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0002 a0001c0002t0001 a0001c0003t0002	a0001c0002t0001g0081 a0001c0003t0002g0086 a0001c0002t0001g0081 a0001c0003t0002g0086	2	13	0.1538	17	c.293 others(36): Show c.293-13206_293-13190dupAAAAAAAAAAAAAAAAA	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	4/11			chr15	TogoVar
CSNK1G1_chr15_64160525_64361173	64238516	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0122 a0001c0001t0010g0122	1	130	0.0077	17	c.292 others(36): Show c.292+12995_292+12996insATATATATATATATATA	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	4/11			chr15	TogoVar
CSNK1G2_chr19_1936172_1986338	1939438	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG02976.hp1 HG02723.hp2 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0057 a0001c0002t0002g0244 a0001c0002t0002g0057 a0001c0002t0002g0244	2	159	0.0126	17	c.-22 others(28): Show c.-2246_-2245insTTTTTTTTTTTTTTTTT	CSNK1G2	ENSG00000133275.16	transcript	ENST00000255641.13	protein_coding		1733		chr19	TogoVar
CSNK1G2_chr19_1936172_1986338	1939444	T T	TTTTTTTT others(10): Show TTTTTTTTTTTTTTTTTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 HG03209.hp1 HG02280.hp1 HG03209.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0011 a0001c0001 a0002c0011	a0001c0001t0012 a0002c0011t0023 a0001c0001t0012 a0002c0011t0023	a0001c0001t0012g0016 a0002c0011t0023g0015 a0001c0001t0012g0016 a0002c0011t0023g0015	2	379	0.0053	17	c.-22 others(28): Show c.-2240_-2239insTTTTTTTTTTTTTTTTG	CSNK1G2	ENSG00000133275.16	transcript	ENST00000255641.13	protein_coding		1727		chr19	TogoVar
CSNK2A1_chr20_467498_548790	485101	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19007.hp1 NA19068.hp1 NA19007.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0112 a0001c0001t0011g0204 a0001c0001t0001g0112 a0001c0001t0011g0204	2	241	0.0083	17	c.106 others(36): Show c.1061-1026_1061-1025insATATATATATATATATA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485102	A A	AATAATAA others(10): Show AATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0280 a0001c0001t0015g0280	1	301	0.0033	17	c.106 others(36): Show c.1061-1027_1061-1026insATTATTATTATTATTAT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485103	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02717.hp1 HG01192.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0090 a0001c0001t0009g0227 a0001c0001t0001g0090 a0001c0001t0009g0227	2	222	0.0090	17	c.106 others(36): Show c.1061-1028_1061-1027insATATATATATATATATA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	485105	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0164 a0001c0001t0051g0164	1	203	0.0049	17	c.106 others(36): Show c.1061-1030_1061-1029insATATATATATATATATA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	490335	C C	CTTTTCTT others(10): Show CTTTTCTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02886.hp1 HG03225.hp1 HG02622.hp2 HG02886.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0088 a0001c0001t0035 a0001c0001t0088	a0001c0001t0035g0311 a0001c0001t0035g0312 a0001c0001t0088g0310 a0001c0001t0035g0311 a0001c0001t0035g0312 a0001c0001t0088g0310	3	165	0.0182	17	c.622 others(32): Show c.622-455_622-454insAAAAAAAAAAAAGAAAA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	9/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	490335	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02280.hp1 HG02486.hp2 others(2): Show HG02145.hp2 HG02280.hp1 HG02486.hp2 HG03540.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0022 a0001c0001t0048 a0001c0001t0016 a0001c0001t0022 a0001c0001t0048	a0001c0001t0016g0028 a0001c0001t0016g0030 a0001c0001t0022g0029 others(2): Show a0001c0001t0016g0028 a0001c0001t0016g0030 a0001c0001t0022g0029 a0001c0001t0022g0031 a0001c0001t0048g0032	5	167	0.0299	17	c.622 others(32): Show c.622-455_622-454insAAAAAAAAAAAAAAAAA	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	9/13			chr20	TogoVar
CSNK2A1_chr20_467498_548790	523858	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0312 a0001c0001t0035g0312	1	226	0.0044	17	c.-11 others(36): Show c.-110+4058_-110+4074dupTTTTTTTTTTTTTTTTT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	2/13			chr20	TogoVar
CSNK2A2_chr16_58152907_58203106	58171979	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01981.hp1 NA18963.hp2 NA18993.hp2 others(2): Show HG01981.hp1 NA18963.hp2 NA18993.hp2 NA18995.hp1 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0296 others(2): Show a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0296 a0001c0001t0002g0298 a0001c0001t0002g0301	5	257	0.0195	17	c.429 others(34): Show c.429+2471_429+2472insATATATATATATATATA	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	5/11			chr16	TogoVar
CSNK2A2_chr16_58152907_58203106	58171980	T T	TATATATA others(10): Show TATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03017.hp2 NA19066.hp1 NA19087.hp1 others(1): Show HG03017.hp2 NA19066.hp1 NA19087.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0035 a0001c0001t0001g0223 a0001c0001t0002g0037 others(1): Show a0001c0001t0001g0035 a0001c0001t0001g0223 a0001c0001t0002g0037 a0001c0001t0002g0291	4	320	0.0125	17	c.429 others(34): Show c.429+2470_429+2471insTATATATATATATATAT	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	5/11			chr16	TogoVar
CSNKA2IP_chr3_88333456_88472594	88445275	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01074.hp2 HG01123.hp2 others(12): Show HG01070.hp2 HG01074.hp2 HG01123.hp2 HG01255.hp1 HG01346.hp2 HG01975.hp2 HG01981.hp1 HG01993.hp2 HG02300.hp2 NA18955.hp1 NA18971.hp2 NA19004.hp1 NA19005.hp2 NA19085.hp2 NA20752.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0002 a0001c0004t0001 a0001c0004t0002	a0001c0004t0001g0200 a0001c0004t0001g0202 a0001c0004t0001g0203 others(12): Show a0001c0004t0001g0200 a0001c0004t0001g0202 a0001c0004t0001g0203 a0001c0004t0001g0213 a0001c0004t0001g0214 a0001c0004t0001g0217 a0001c0004t0001g0220 a0001c0004t0001g0227 a0001c0004t0001g0230 a0001c0004t0001g0238 a0001c0004t0001g0239 a0001c0004t0002g0261 a0001c0004t0002g0323 a0001c0004t0002g0342 a0001c0004t0002g0344	15	79	0.1899	17	c.-27 others(38): Show c.-270-19804_-270-19788dupAAAAAAAAAAAAAAAAA	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88458141	G G	GTTTTTTT others(10): Show GTTTTTTTTTGTGTTTTT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0019 a0019	a0019c0016 a0019c0016	a0019c0016t0001 a0019c0016t0001	a0019c0016t0001g0035 a0019c0016t0001g0035	1	112	0.0089	17	c.-27 others(36): Show c.-270-6938_-270-6937insGTGTTTTTTTTTTTTTT	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSRNP3_chr2_165464698_165694407	165653972	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03225.hp2 HG03209.hp2 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0191 a0001c0002t0012g0237 a0001c0002t0012g0191 a0001c0002t0012g0237	2	58	0.0345	17	c.149 others(34): Show c.149-3769_149-3753dupAAAAAAAAAAAAAAAAA	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165665775	A A	AGAGAGAG others(10): Show AGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0060 a0001c0001t0008g0060	1	106	0.0094	17	c.408 others(34): Show c.408+7755_408+7756insGAGAGAGAGAGAGAGAG	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	5/6			chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165666985	A A	AAGGAAGG others(10): Show AAGGAAGGAAGGAAAGAG	intron_variant intron_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0133 a0001c0002t0001g0133	1	244	0.0041	17	c.408 others(34): Show c.408+8967_408+8968insGAAGGAAGGAAAGAGAG	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRP1_chr1_201478530_201512123	201484057	T T	TCCTTAAG others(10): Show TCCTTAAGACCTGGGTTA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0116 a0001c0001t0013g0116	1	430	0.0023	17	c.63 others(26): Show c.639_*655dupTAACCCAGGTCTTAAGG	CSRP1	ENSG00000159176.14	transcript	ENST00000340006.7	protein_coding	6/6	655		chr1	TogoVar
CSRP3_chr11_19177030_19206983	19197575	C C	CTTTCTTT others(10): Show CTTTCTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0118 a0001c0001t0001g0118	1	411	0.0024	17	c.-29 others(34): Show c.-29+4378_-29+4379insAGAAAGAAAGAAAGAAA	CSRP3	ENSG00000129170.10	transcript	ENST00000265968.9	protein_coding	1/5			chr11	TogoVar
CST6_chr11_66007008_66018505	66007272	A A	ACCACAAG others(10): Show ACCACAAGCCCTGCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp2 HG02976.hp2 HG03486.hp1 others(2): Show HG01109.hp2 HG02976.hp2 HG03486.hp1 HG03516.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0025 a0001c0001t0001g0036 a0001c0001t0001g0005 a0001c0001t0001g0025 a0001c0001t0001g0036	5	412	0.0121	17	c.-47 others(28): Show c.-4773_-4772insCCACAAGCCCTGCCCCC	CST6	ENSG00000175315.3	transcript	ENST00000312134.3	protein_coding		4735		chr11	TogoVar
CST8_chr20_23486117_23501010	23490094	T T	TAAATTAT others(10): Show TAAATTATATATATATAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	437	0.0023	17	c.-13 others(28): Show c.-1392_-1391insAAATTATATATATATAA	CST8	ENSG00000125815.9	transcript	ENST00000246012.2	protein_coding		1022		chr20	TogoVar
CST9L_chr20_23559732_23573484	23561117	T T	TTCTTTCT others(10): Show TTCTTTCTTTTCTTTCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0019	1	381	0.0026	17	c.38 others(28): Show c.3830_*3831insGAGAAAGAAAAGAAAGA	CST9L	ENSG00000101435.5	transcript	ENST00000376979.4	protein_coding		3614		chr20	TogoVar
CSTF1_chr20_56387645_56411362	56404812	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00609.hp2 HG01074.hp2 HG01169.hp2 others(19): Show HG00609.hp2 HG01074.hp2 HG01169.hp2 HG02015.hp1 HG02015.hp2 HG02071.hp1 HG02135.hp2 HG02165.hp2 HG02523.hp1 HG03017.hp2 NA18942.hp2 NA18944.hp2 NA18954.hp1 NA18974.hp1 NA18974.hp2 NA18977.hp2 NA18981.hp1 NA18983.hp2 NA19002.hp1 NA19004.hp1 NA19076.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0063 a0001c0001t0080 others(1): Show a0001c0001t0004 a0001c0001t0063 a0001c0001t0080 a0001c0001t0081	a0001c0001t0004g0001 a0001c0001t0004g0003 a0001c0001t0004g0004 others(5): Show a0001c0001t0004g0001 a0001c0001t0004g0003 a0001c0001t0004g0004 a0001c0001t0004g0007 a0001c0001t0004g0016 a0001c0001t0063g0001 a0001c0001t0080g0001 a0001c0001t0081g0001	22	52	0.4231	17	c.10 others(28): Show c.1095_*1111dupTTTTTTTTTTTTTTTTT	CSTF1	ENSG00000101138.12	transcript	ENST00000217109.9	protein_coding	6/6	1112	INFO_REALIGN_3_PRIME	chr20	TogoVar
CSTPP1_chr11_46931761_47167247	47101164	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0184 a0001c0001t0001g0184	1	90	0.0111	17	c.281 others(36): Show c.281-36472_281-36456dupTTTTTTTTTTTTTTTTT	CSTPP1	ENSG00000149179.14	transcript	ENST00000278460.12	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
CSTPP1_chr11_46931761_47167247	47122091	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	98	0.0102	17	c.281 others(36): Show c.281-15553_281-15552insAAAAAAAAAAAAATATA	CSTPP1	ENSG00000149179.14	transcript	ENST00000278460.12	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
CSTPP1_chr11_46931761_47167247	47122091	A A	AAAAATAT others(10): Show AAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0167 a0001c0001t0001g0167	1	98	0.0102	17	c.281 others(36): Show c.281-15553_281-15552insAAATATATATATATATA	CSTPP1	ENSG00000149179.14	transcript	ENST00000278460.12	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar

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