Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FGD2_chr6_37000655_37034069	37028615	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01361.hp1 HG01361.hp2 HG01884.hp2 others(6): Show HG01361.hp1 HG01361.hp2 HG01884.hp2 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02572.hp2 HG02647.hp1 HG02896.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0008 a0001c0001 a0001c0002 a0002c0008	a0001c0001t0009 a0001c0002t0009 a0002c0008t0009 a0001c0001t0009 a0001c0002t0009 a0002c0008t0009	a0001c0001t0009g0007 a0001c0002t0009g0065 a0001c0002t0009g0103 others(4): Show a0001c0001t0009g0007 a0001c0002t0009g0065 a0001c0002t0009g0103 a0001c0002t0009g0200 a0001c0002t0009g0217 a0002c0008t0009g0075 a0002c0008t0009g0159	9	430	0.0209	17	c.45 others(26): Show c.453_*469dupTTTTTTTTTTTTTTTTT	FGD2	ENSG00000146192.15	transcript	ENST00000274963.13	protein_coding	16/16	470	INFO_REALIGN_3_PRIME	chr6	TogoVar
FGD4_chr12_32394558_32651050	32422288	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01993.hp2 HG02080.hp1 others(1): Show HG01978.hp1 HG01993.hp2 HG02080.hp1 NA19002.hp2	a0002 a0002	a0002c0002 a0002c0005 a0002c0006 a0002c0002 a0002c0005 a0002c0006	a0002c0002t0001 a0002c0005t0001 a0002c0006t0002 a0002c0002t0001 a0002c0005t0001 a0002c0006t0002	a0002c0002t0001g0083 a0002c0002t0001g0085 a0002c0005t0001g0064 others(1): Show a0002c0002t0001g0083 a0002c0002t0001g0085 a0002c0005t0001g0064 a0002c0006t0002g0088	4	232	0.0172	17	c.166 others(36): Show c.166+22341_166+22357dupTTTTTTTTTTTTTTTTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599494	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0023 a0001c0023	a0001c0023t0005 a0001c0023t0005	a0001c0023t0005g0131 a0001c0023t0005g0131	1	232	0.0043	17	c.110 others(34): Show c.1101+922_1101+923insAAAAAAAAAAAAAAAAA	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599499	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG02132.hp2 HG03492.hp2 others(2): Show HG01069.hp2 HG02132.hp2 HG03492.hp2 HG03927.hp2 HG04204.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0003 a0002c0005 a0003c0011 a0001c0003 a0002c0005 a0003c0011	a0001c0003t0018 a0002c0005t0035 a0003c0011t0024 a0001c0003t0018 a0002c0005t0035 a0003c0011t0024	a0001c0003t0018g0004 a0001c0003t0018g0008 a0002c0005t0035g0222 others(2): Show a0001c0003t0018g0004 a0001c0003t0018g0008 a0002c0005t0035g0222 a0003c0011t0024g0119 a0003c0011t0024g0120	5	232	0.0216	17	c.110 others(34): Show c.1101+922_1101+923insAAAAAAAGAAAAAAAAA	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599534	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0005 a0002c0005t0005	a0002c0005t0005g0157 a0002c0005t0005g0157	1	232	0.0043	17	c.110 others(34): Show c.1101+962_1101+978dupTTTTTTTTTTTTTTTTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD5_chr3_14813962_14939571	14844217	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0166 a0001c0001t0002g0166	1	342	0.0029	17	c.252 others(38): Show c.2526-19910_2526-19909insAAAAAAAAAAAAAAATA	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD5_chr3_14813962_14939571	14844217	A A	AAAAAAAA others(10): Show AAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0140 a0001c0001t0001g0140	1	342	0.0029	17	c.252 others(38): Show c.2526-19910_2526-19909insAAAAAAAAATATATATA	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD5_chr3_14813962_14939571	14844217	A A	AAAAAAAA others(10): Show AAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0230 a0001c0001t0001g0230	1	342	0.0029	17	c.252 others(38): Show c.2526-19910_2526-19909insAAAAAAATATATATATA	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD5_chr3_14813962_14939571	14844217	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0243 a0001c0001t0001g0243	1	342	0.0029	17	c.252 others(38): Show c.2526-19911_2526-19910insTATATATATATATATAT	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19			chr3	TogoVar
FGD5_chr3_14813962_14939571	14853636	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 NA18939.hp1 NA18948.hp1 others(1): Show HG01175.hp2 NA18939.hp1 NA18948.hp1 NA19056.hp2	a0002 a0012 a0002 a0012	a0002c0003 a0002c0007 a0012c0034 a0002c0003 a0002c0007 a0012c0034	a0002c0003t0001 a0002c0007t0001 a0012c0034t0013 a0002c0003t0001 a0002c0007t0001 a0012c0034t0013	a0002c0003t0001g0172 a0002c0007t0001g0239 a0002c0007t0001g0240 others(1): Show a0002c0003t0001g0172 a0002c0007t0001g0239 a0002c0007t0001g0240 a0012c0034t0013g0176	4	342	0.0117	17	c.252 others(38): Show c.2526-10477_2526-10461dupTTTTTTTTTTTTTTTTT	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD6_chr12_95071749_95222467	95083004	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0013 a0013	a0013c0031 a0013c0031	a0013c0031t0009 a0013c0031t0009	a0013c0031t0009g0195 a0013c0031t0009g0195	1	384	0.0026	17	c.425 others(36): Show c.4257-1449_4257-1448insATATATATATATATATA	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95083010	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0009 a0009	a0009c0013 a0009c0013	a0009c0013t0024 a0009c0013t0024	a0009c0013t0024g0085 a0009c0013t0024g0085	1	384	0.0026	17	c.425 others(36): Show c.4257-1455_4257-1454insATATATATATATATATA	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95149259	T T	TATATAAT others(10): Show TATATAATATTATATATA	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0079 a0001c0001t0079	a0001c0001t0079g0371 a0001c0001t0079g0371	1	384	0.0026	17	c.268 others(36): Show c.2685+3551_2685+3552insTATATATAATATTATAT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	5/20			chr12	TogoVar
FGF10_chr5_44295247_44394420	44376490	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03239.hp2 NA19085.hp2 HG03239.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0314 a0001c0001t0001g0334 a0001c0001t0001g0314 a0001c0001t0001g0334	2	350	0.0057	17	c.325 others(36): Show c.325+11851_325+11867dupTTTTTTTTTTTTTTTTT	FGF10	ENSG00000070193.5	transcript	ENST00000264664.5	protein_coding	1/2			chr5	TogoVar
FGF12_chr3_192134390_192732541	192158382	C C	CTTTCTTT others(10): Show CTTTCTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0008 a0001c0001t0015g0008	1	90	0.0111	17	c.427 others(36): Show c.427+12075_427+12076insAGAAAGAAAGAAAGAAA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	5/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192167769	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02976.hp1 HG02257.hp2 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0037 a0001c0001t0017 a0001c0001t0037	a0001c0001t0017g0016 a0001c0001t0037g0066 a0001c0001t0017g0016 a0001c0001t0037g0066	2	90	0.0222	17	c.427 others(34): Show c.427+2688_427+2689insATATATATATATATATA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	5/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192378026	T T	TTTCTCTC others(10): Show TTTCTCTCTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02300.hp1 HG03130.hp2 others(1): Show HG01109.hp1 HG02300.hp1 HG03130.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0011 a0001c0001t0027 others(1): Show a0001c0001t0005 a0001c0001t0011 a0001c0001t0027 a0001c0001t0033	a0001c0001t0005g0029 a0001c0001t0011g0039 a0001c0001t0027g0047 others(1): Show a0001c0001t0005g0029 a0001c0001t0011g0039 a0001c0001t0027g0047 a0001c0001t0033g0011	4	90	0.0444	17	c.14- others(34): Show c.14-17489_14-17488insGAAAGAAAGAGAGAGAA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192537950	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0039 a0001c0001t0011g0039	1	90	0.0111	17	c.14- others(36): Show c.14-177413_14-177412insAAAAAAAAAAAAAAAAA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192714513	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02132.hp1 HG02257.hp1 others(4): Show HG01109.hp1 HG02132.hp1 HG02257.hp1 HG02886.hp2 HG03195.hp1 HG03471.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 others(4): Show a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 a0001c0001t0017 a0001c0001t0033 a0001c0001t0038 a0001c0001t0041	a0001c0001t0006g0049 a0001c0001t0011g0048 a0001c0001t0012g0012 others(4): Show a0001c0001t0006g0049 a0001c0001t0011g0048 a0001c0001t0012g0012 a0001c0001t0017g0009 a0001c0001t0033g0011 a0001c0001t0038g0010 a0001c0001t0041g0045	7	90	0.0778	17	c.13+ others(34): Show c.13+12651_13+12667dupAAAAAAAAAAAAAAAAA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF14_chr13_101705804_101921945	101820782	A A	AAGTATTA others(10): Show AAGTATTAAGCTTATAGC	intron_variant intron_variant	MODIFIER	HG04184.hp2 NA18992.hp2 NA19056.hp1 others(1): Show HG04184.hp2 NA18992.hp2 NA19056.hp1 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0012 a0001c0001t0033 others(1): Show a0001c0001t0008 a0001c0001t0012 a0001c0001t0033 a0001c0001t0078	a0001c0001t0008g0173 a0001c0001t0012g0191 a0001c0001t0033g0095 others(1): Show a0001c0001t0008g0173 a0001c0001t0012g0191 a0001c0001t0033g0095 a0001c0001t0078g0094	4	266	0.0150	17	c.408 others(36): Show c.408+47942_408+47943insGCTATAAGCTTAATACT	FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4			chr13	TogoVar
FGF14_chr13_101705804_101921945	101884062	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01192.hp2 HG02055.hp2 others(3): Show HG01109.hp2 HG01192.hp2 HG02055.hp2 HG02071.hp2 HG02074.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0013 a0001c0001t0033 others(2): Show a0001c0001t0005 a0001c0001t0013 a0001c0001t0033 a0001c0001t0092 a0001c0002t0014	a0001c0001t0005g0103 a0001c0001t0013g0142 a0001c0001t0013g0143 others(3): Show a0001c0001t0005g0103 a0001c0001t0013g0142 a0001c0001t0013g0143 a0001c0001t0033g0049 a0001c0001t0092g0113 a0001c0002t0014g0118	6	266	0.0226	17	c.194 others(34): Show c.194-8783_194-8767dupTTTTTTTTTTTTTTTTT	FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	1/4			chr13	TogoVar
FGF18_chr5_171414647_171462626	171461605	T T	TTTTCTTT others(10): Show TTTTCTTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0254 a0001c0001t0001g0254	1	388	0.0026	17	c.48 others(28): Show c.4800_*4801insTTTCTTTTCTTTCTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		3980		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(10): Show CTTTCTTTCTTTCTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG01993.hp2 HG03486.hp1 others(2): Show HG01167.hp1 HG01993.hp2 HG03486.hp1 HG04115.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0189 a0001c0001t0001g0223 others(2): Show a0001c0001t0001g0059 a0001c0001t0001g0189 a0001c0001t0001g0223 a0001c0001t0001g0225 a0001c0001t0001g0248	5	388	0.0129	17	c.48 others(28): Show c.4824_*4825insTTTCTTTCTTTCTTTCT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461632	T T	TCTTTCTT others(10): Show TCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0126	1	388	0.0026	17	c.48 others(28): Show c.4827_*4828insCTTTCTTTCTTTCTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4007		chr5	TogoVar
FGF2_chr4_122821831_122903236	122899044	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG01071.hp1 HG01109.hp1 others(10): Show HG00099.hp1 HG01071.hp1 HG01109.hp1 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01516.hp2 HG02698.hp1 HG02886.hp1 HG03486.hp2 NA19240.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0009 a0001c0001t0025 others(1): Show a0001c0001t0005 a0001c0001t0009 a0001c0001t0025 a0001c0001t0030	a0001c0001t0005g0003 a0001c0001t0005g0057 a0001c0001t0005g0105 others(9): Show a0001c0001t0005g0003 a0001c0001t0005g0057 a0001c0001t0005g0105 a0001c0001t0005g0106 a0001c0001t0005g0108 a0001c0001t0005g0124 a0001c0001t0005g0131 a0001c0001t0005g0141 a0001c0001t0009g0007 a0001c0001t0009g0225 a0001c0001t0025g0107 a0001c0001t0030g0128	13	256	0.0508	17	c.66 others(28): Show c.6648_*6649insTTTTTTTTTTTTTTTTT	FGF2	ENSG00000138685.18	transcript	ENST00000644866.2	protein_coding		809		chr4	TogoVar
FGFR1OP2_chr12_26933470_26971648	26950213	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0062 a0001c0001t0014g0062	1	426	0.0024	17	c.-14 others(34): Show c.-14-3922_-14-3906dupTTTTTTTTTTTTTTTTT	FGFR1OP2	ENSG00000111790.14	transcript	ENST00000229395.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(10): Show AAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0185 a0001c0001t0006g0185	1	240	0.0042	17	c.110 others(36): Show c.110-11455_110-11454insATATATATATTTTTTTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAT others(10): Show AAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0004 a0004	a0004c0008 a0004c0008	a0004c0008t0003 a0004c0008t0003	a0004c0008t0003g0120 a0004c0008t0003g0120	1	240	0.0042	17	c.110 others(36): Show c.110-11455_110-11454insATATATATATATTTTTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR4_chr5_177081915_177103144	177084675	A A	ATATATAT others(10): Show ATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG01516.hp1 HG02486.hp2 others(7): Show HG01168.hp1 HG01516.hp1 HG02486.hp2 HG02523.hp2 HG02683.hp2 HG03491.hp2 NA18945.hp1 NA18970.hp1 NA19012.hp2 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0014 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0014 a0001c0001t0001g0095 a0001c0001t0001g0110 a0001c0001t0001g0111	10	372	0.0269	17	c.-24 others(28): Show c.-2456_-2455insTATATATATATATATAT	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding		2239		chr5	TogoVar
FGFR4_chr5_177081915_177103144	177084675	A A	ATATATAT others(10): Show ATATATATATATATATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG01346.hp1 HG02109.hp1 others(4): Show HG00642.hp2 HG01346.hp1 HG02109.hp1 HG02602.hp1 HG03688.hp1 NA18942.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0012 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0030 a0001c0001t0001g0065	7	372	0.0188	17	c.-24 others(28): Show c.-2456_-2455insTATATATATATATATTT	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding		2239		chr5	TogoVar
FGFR4_chr5_177081915_177103144	177084675	A A	ATATATAT others(10): Show ATATATATATATATTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18947.hp1 NA18990.hp2 NA19002.hp2 NA18947.hp1 NA18990.hp2 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	3	372	0.0081	17	c.-24 others(28): Show c.-2456_-2455insTATATATATATATTTTT	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding		2239		chr5	TogoVar
FGFR4_chr5_177081915_177103144	177084675	A A	ATATATAT others(10): Show ATATATATATTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG02965.hp1 HG01243.hp1 HG02965.hp1	a0004 a0004	a0004c0009 a0004c0009	a0004c0009t0005 a0004c0009t0005	a0004c0009t0005g0204 a0004c0009t0005g0205 a0004c0009t0005g0204 a0004c0009t0005g0205	2	372	0.0054	17	c.-24 others(28): Show c.-2456_-2455insTATATATATTTTTTTTT	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding		2239		chr5	TogoVar
FGFR4_chr5_177081915_177103144	177084676	T T	TATATATA others(10): Show TATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02155.hp1 NA18747.hp1 HG02155.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0096 a0001c0001t0001g0001 a0001c0001t0001g0096	2	372	0.0054	17	c.-24 others(28): Show c.-2455_-2454insATATATATATATATATA	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding		2238		chr5	TogoVar
FGFRL1_chr4_1006626_1031898	1009775	G G	GGCCCCGG others(10): Show GGCCCCGGCCCCGCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01975.hp2 HG01975.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0133 a0001c0002t0005g0133	1	414	0.0024	17	c.-21 others(28): Show c.-2196_-2195insGCCCCGGCCCCGCCCCC	FGFRL1	ENSG00000127418.15	transcript	ENST00000510644.6	protein_coding		1850		chr4	TogoVar
FGGY_chr1_59292094_59767730	59507684	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0126 a0001c0001t0001g0126	1	166	0.0060	17	c.671 others(34): Show c.671-4620_671-4604dupTTTTTTTTTTTTTTTTT	FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	6/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
FGL1_chr8_17859389_17900524	17881138	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03516.hp2 HG01884.hp2 HG03516.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0045 a0004c0004t0001g0276 a0004c0004t0001g0045 a0004c0004t0001g0276	2	366	0.0055	17	c.244 others(32): Show c.244+860_244+861insAAAAAAAAAAAAAAAAA	FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	3/7			chr8	TogoVar
FGR_chr1_27607064_27640185	27608849	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0107	1	278	0.0036	17	c.40 others(28): Show c.4064_*4065insCACACACACACACACAC	FGR	ENSG00000000938.13	transcript	ENST00000374005.8	protein_coding		3214		chr1	TogoVar
FHAD1_chr1_15242223_15403328	15278475	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0090 a0001c0090	a0001c0090t0048 a0001c0090t0048	a0001c0090t0048g0158 a0001c0090t0048g0158	1	294	0.0034	17	c.300 others(34): Show c.300+5962_300+5963insTTTTTTTTTTTTTTTTT	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	3/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHAD1_chr1_15242223_15403328	15365481	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03225.hp1 HG03540.hp1 others(1): Show HG02055.hp1 HG03225.hp1 HG03540.hp1 NA18906.hp1	a0001 a0002 a0040 others(1): Show a0001 a0002 a0040 a0060	a0001c0090 a0002c0003 a0040c0077 others(1): Show a0001c0090 a0002c0003 a0040c0077 a0060c0065	a0001c0090t0048 a0002c0003t0014 a0040c0077t0037 others(1): Show a0001c0090t0048 a0002c0003t0014 a0040c0077t0037 a0060c0065t0043	a0001c0090t0048g0158 a0002c0003t0014g0151 a0040c0077t0037g0262 others(1): Show a0001c0090t0048g0158 a0002c0003t0014g0151 a0040c0077t0037g0262 a0060c0065t0043g0005	4	294	0.0136	17	c.304 others(34): Show c.3048-342_3048-326dupTTTTTTTTTTTTTTTTT	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	23/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHAD1_chr1_15242223_15403328	15389447	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01515.hp1 HG03486.hp1 others(2): Show HG01074.hp1 HG01515.hp1 HG03486.hp1 HG04204.hp1 NA18971.hp1	a0002 a0003 a0009 a0002 a0003 a0009	a0002c0003 a0002c0007 a0002c0134 others(2): Show a0002c0003 a0002c0007 a0002c0134 a0003c0085 a0009c0050	a0002c0003t0005 a0002c0007t0006 a0002c0134t0003 others(2): Show a0002c0003t0005 a0002c0007t0006 a0002c0134t0003 a0003c0085t0055 a0009c0050t0020	a0002c0003t0005g0172 a0002c0007t0006g0115 a0002c0134t0003g0209 others(2): Show a0002c0003t0005g0172 a0002c0007t0006g0115 a0002c0134t0003g0209 a0003c0085t0055g0139 a0009c0050t0020g0114	5	294	0.0170	17	c.426 others(36): Show c.4269+1321_4269+1337dupAAAAAAAAAAAAAAAAA	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	32/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHIP1A_chr4_151404176_151675503	151411343	A A	ATTCTTTT others(10): Show ATTCTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03130.hp2 HG02717.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0120 a0001c0001t0003g0121	2	252	0.0079	17	c.-35 others(36): Show c.-356+1879_-356+1880insTCTTTTTTTTTTTTTTT	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
FHIP1A_chr4_151404176_151675503	151443724	T T	TGTGTGTG others(10): Show TGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0077 a0001c0002t0002g0077	1	252	0.0040	17	c.-35 others(38): Show c.-355-10977_-355-10976insGTGTGTGTGTGTGTGTG	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	1/13			chr4	TogoVar
FHIP1A_chr4_151404176_151675503	151548066	G G	GAAGGTTA others(10): Show GAAGGTTACATGGCTACT	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0217 a0001c0001t0001g0217	1	252	0.0040	17	c.-12 others(38): Show c.-122-18068_-122-18052dupGTTACATGGCTACTAAG	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
FHIP2A_chr10_114816780_114869717	114857314	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG01069.hp2 others(38): Show HG00140.hp2 HG00280.hp1 HG01069.hp2 HG01081.hp2 HG01168.hp2 HG01169.hp1 HG01192.hp2 HG01243.hp1 HG01256.hp2 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01517.hp2 HG01975.hp1 HG01978.hp2 HG01993.hp1 HG02055.hp2 HG02155.hp1 HG02280.hp2 HG02300.hp1 HG02486.hp1 HG02572.hp2 HG02602.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG03017.hp1 HG03486.hp2 HG03492.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp2 HG03927.hp2 HG06807.hp2 NA18906.hp1 NA18949.hp1 NA19084.hp2 NA20752.hp1 NA20805.hp2 NA20905.hp1	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0008	a0001c0003 a0001c0007 a0002c0006 others(2): Show a0001c0003 a0001c0007 a0002c0006 a0006c0009 a0008c0012	a0001c0003t0003 a0001c0003t0004 a0001c0003t0008 others(10): Show a0001c0003t0003 a0001c0003t0004 a0001c0003t0008 a0001c0003t0009 a0001c0003t0012 a0001c0003t0015 a0001c0003t0019 a0001c0003t0020 a0001c0003t0026 a0001c0007t0009 a0002c0006t0003 a0006c0009t0004 a0008c0012t0003	a0001c0003t0003g0003 a0001c0003t0003g0016 a0001c0003t0003g0037 others(30): Show a0001c0003t0003g0003 a0001c0003t0003g0016 a0001c0003t0003g0037 a0001c0003t0003g0038 a0001c0003t0003g0041 a0001c0003t0003g0042 a0001c0003t0003g0043 a0001c0003t0003g0047 a0001c0003t0003g0048 a0001c0003t0003g0049 a0001c0003t0003g0051 a0001c0003t0003g0053 a0001c0003t0003g0055 a0001c0003t0003g0056 a0001c0003t0003g0057 a0001c0003t0003g0058 a0001c0003t0003g0063 a0001c0003t0003g0065 a0001c0003t0004g0116 a0001c0003t0008g0018 a0001c0003t0008g0105 a0001c0003t0008g0106 a0001c0003t0009g0003 a0001c0003t0012g0015 a0001c0003t0015g0052 a0001c0003t0019g0061 a0001c0003t0020g0064 a0001c0003t0026g0115 a0001c0007t0009g0228 a0002c0006t0003g0039 a0002c0006t0003g0059 a0006c0009t0004g0113 a0008c0012t0003g0003	41	332	0.1235	17	c.194 others(36): Show c.1947+1986_1947+1987insTTTTTTTTTTTTTTTTT	FHIP2A	ENSG00000151553.16	transcript	ENST00000369248.9	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr10	TogoVar
FHIP2B_chr8_22084150_22109911	22104831	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0077 a0001c0001t0032g0077	1	394	0.0025	17	c.19 others(28): Show c.1902_*1918dupAAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding	17/17	1919	INFO_REALIGN_3_PRIME	chr8	TogoVar
FHIP2B_chr8_22084150_22109911	22104831	T T	TTAAAAAA others(10): Show TTAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0035 a0001c0011t0035	a0001c0011t0035g0055 a0001c0011t0035g0055	1	394	0.0025	17	c.19 others(28): Show c.1900_*1901insTAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding	17/17	1901		chr8	TogoVar
FHIP2B_chr8_22084150_22109911	22106419	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp1 NA18970.hp2 NA18999.hp1 others(3): Show HG01175.hp1 NA18970.hp2 NA18999.hp1 NA19004.hp2 NA19011.hp1 NA19067.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0024 others(2): Show a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0024 a0001c0001t0002g0029 a0001c0001t0004g0006	6	394	0.0152	17	c.34 others(28): Show c.3488_*3489insAAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding		1509		chr8	TogoVar
FHIT_chr3_59742277_61256452	59788881	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02280.hp1 NA18906.hp2 HG02145.hp1 HG02280.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006	a0001c0001t0002g0015 a0001c0001t0003g0005 a0001c0001t0006g0039 a0001c0001t0002g0015 a0001c0001t0003g0005 a0001c0001t0006g0039	3	46	0.0652	17	c.349 others(36): Show c.349-36561_349-36560insAAAAAAAAAAAAAAAAA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	8/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60114036	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0031 a0001c0002t0001g0031	1	46	0.0217	17	c.104 others(36): Show c.104-99885_104-99884insATATATATATATATATA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60114488	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0016 a0001c0001t0003g0016	1	46	0.0217	17	c.104 others(38): Show c.104-100337_104-100336insAAAAAAAAAAAAAAAAA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar

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