Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAAAA others(11): Show AAAAAAAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18959.hp2 NA18997.hp1 NA18959.hp2 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	2	432	0.0046	18	c.-80 others(27): Show c.-805_-804insATATATATATATTTTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAATA others(11): Show AAAAAATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	432	0.0023	18	c.-80 others(27): Show c.-805_-804insATATATATATATATTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAATATA others(11): Show AAAATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02273.hp1 HG03704.hp1 HG02273.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0001 a0001c0001t0001g0002	2	432	0.0046	18	c.-80 others(27): Show c.-805_-804insATATATATATATATATTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC5A_chr7_141922357_141951974	141933575	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02976.hp1 HG02970.hp2 HG02976.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0013 a0003c0003t0013	a0003c0003t0013g0036 a0003c0003t0013g0036	2	386	0.0052	18	c.346 others(35): Show c.346-1767_346-1750dupATATATATATATATATAT	CLEC5A	ENSG00000258227.7	transcript	ENST00000546910.6	protein_coding	5/6			chr7	TogoVar
CLEC6A_chr12_8450962_8483330	8472994	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0119 a0001c0001t0006g0119	1	334	0.0030	18	c.370 others(35): Show c.370-3129_370-3112dupTTTTTTTTTTTTTTTTTT	CLEC6A	ENSG00000205846.4	transcript	ENST00000382073.4	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr12	TogoVar
CLEC7A_chr12_10111777_10135199	10128207	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0098 a0003c0003t0005g0098	1	450	0.0022	18	c.104 others(33): Show c.104-380_104-363dupGTGTGTGTGTGTGTGTGT	CLEC7A	ENSG00000172243.18	transcript	ENST00000304084.13	protein_coding	1/5			chr12	TogoVar
CLGN_chr4_140383453_140432648	140396907	G G	GTATATAT others(11): Show GTATATATATATATATGTA	intron_variant intron_variant	MODIFIER	NA18986.hp1 NA18999.hp2 NA19060.hp1 others(2): Show NA18986.hp1 NA18999.hp2 NA19060.hp1 NA19070.hp2 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0066 a0001c0001t0002g0068 a0001c0001t0002g0012 a0001c0001t0002g0066 a0001c0001t0002g0068	5	358	0.0140	18	c.885 others(33): Show c.885-703_885-702insTACATATATATATATATA	CLGN	ENSG00000153132.13	transcript	ENST00000325617.10	protein_coding	8/14			chr4	TogoVar
CLHC1_chr2_55167547_55237293	55217552	A A	AAAAAATA others(11): Show AAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0003 a0001c0005t0003	a0001c0005t0003g0027 a0001c0005t0003g0027	1	404	0.0025	18	c.365 others(33): Show c.365+258_365+259insATATATATATATATTTTT	CLHC1	ENSG00000162994.16	transcript	ENST00000401408.6	protein_coding	4/12			chr2	TogoVar
CLHC1_chr2_55167547_55237293	55217552	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0003 a0001c0005t0003	a0001c0005t0003g0033 a0001c0005t0003g0033	1	404	0.0025	18	c.365 others(33): Show c.365+241_365+258dupATATATATATATATATAT	CLHC1	ENSG00000162994.16	transcript	ENST00000401408.6	protein_coding	4/12			chr2	TogoVar
CLHC1_chr2_55167547_55237293	55217584	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0003 a0001c0005t0003	a0001c0005t0003g0047 a0001c0005t0003g0047	1	404	0.0025	18	c.365 others(33): Show c.365+226_365+227insGTATATATATATATATAT	CLHC1	ENSG00000162994.16	transcript	ENST00000401408.6	protein_coding	4/12			chr2	TogoVar
CLIC1_chr6_31725599_31741530	31735807	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0086	1	395	0.0025	18	c.39+ others(31): Show c.39+437_39+454dupTGTGTGTGTGTGTGTGTG	CLIC1	ENSG00000213719.8	transcript	ENST00000375784.8	protein_coding	1/5			chr6	TogoVar
CLIC2_chrX_155271211_155339614	155280990	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01496.hp1 NA18940.hp1 HG01496.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0018 a0001c0001t0001g0019	2	258	0.0078	18	c.294 others(33): Show c.294-940_294-923dupATATATATATATATATAT	CLIC2	ENSG00000155962.13	transcript	ENST00000369449.7	protein_coding	3/5			chrX	TogoVar
CLIC2_chrX_155271211_155339614	155297884	A A	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00544.hp2 HG00621.hp1 others(32): Show HG00423.hp2 HG00544.hp2 HG00621.hp1 HG00738.hp1 HG01106.hp1 HG01192.hp1 HG01255.hp1 HG01257.hp1 HG01358.hp1 HG02132.hp1 HG02293.hp2 HG02602.hp1 HG02683.hp2 HG02723.hp1 HG02735.hp1 HG02738.hp1 HG02965.hp1 HG03492.hp1 HG03704.hp1 HG04199.hp1 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18955.hp1 NA18966.hp1 NA18972.hp2 NA18975.hp1 NA18977.hp1 NA18986.hp1 NA19000.hp1 NA19004.hp1 NA19006.hp1 NA19012.hp1 NA19066.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0010 others(29): Show a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0021 a0001c0001t0001g0038 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0068 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0088 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0097 a0001c0001t0001g0105 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0126 a0001c0001t0001g0132 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0009g0048	35	258	0.1357	18	c.293 others(33): Show c.293+900_293+901insCTTTTTTTTTTTTTTTTT	CLIC2	ENSG00000155962.13	transcript	ENST00000369449.7	protein_coding	3/5			chrX	TogoVar
CLIC4_chr1_24740447_24849321	24820067	G G	GTGTATAT others(11): Show GTGTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA20300.hp1 HG01978.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0277 a0001c0001t0001g0292 a0001c0001t0001g0277 a0001c0001t0001g0292	2	344	0.0058	18	c.308 others(35): Show c.308+5849_308+5850insGTATATATATATATATAT	CLIC4	ENSG00000169504.15	transcript	ENST00000374379.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CLIC4_chr1_24740447_24849321	24820067	G G	GTGTGTAT others(11): Show GTGTGTATATATATATATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00735.hp2 HG02027.hp2 others(7): Show HG00423.hp1 HG00735.hp2 HG02027.hp2 HG02148.hp1 HG02293.hp2 HG03834.hp1 NA18961.hp2 NA18975.hp1 NA18998.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0015 others(7): Show a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0015 a0001c0001t0001g0022 a0001c0001t0001g0028 a0001c0001t0001g0036 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0086 a0001c0001t0001g0281	10	344	0.0291	18	c.308 others(35): Show c.308+5849_308+5850insGTGTATATATATATATAT	CLIC4	ENSG00000169504.15	transcript	ENST00000374379.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CLIC5_chr6_45893456_46020860	45922823	A A	AAGAGAGA others(11): Show AAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02970.hp2 NA18965.hp1 others(1): Show HG02723.hp1 HG02970.hp2 NA18965.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0035 a0001c0001t0002 a0001c0001t0013 a0001c0001t0035	a0001c0001t0002g0098 a0001c0001t0002g0304 a0001c0001t0013g0045 others(1): Show a0001c0001t0002g0098 a0001c0001t0002g0304 a0001c0001t0013g0045 a0001c0001t0035g0062	4	340	0.0118	18	c.407 others(35): Show c.407-8415_407-8414insCTCTCTCTCTCTCTCTCT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	4/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45928795	T T	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGTGG	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02486.hp1 HG02559.hp2 others(3): Show HG02258.hp2 HG02486.hp1 HG02559.hp2 HG02895.hp2 HG03098.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0018 a0001c0001t0049	a0001c0001t0002g0020 a0001c0001t0002g0222 a0001c0001t0003g0104 others(3): Show a0001c0001t0002g0020 a0001c0001t0002g0222 a0001c0001t0003g0104 a0001c0001t0007g0103 a0001c0001t0018g0337 a0001c0001t0049g0338	6	340	0.0177	18	c.406 others(37): Show c.406+12751_406+12752insCCACACACACACACACAC	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	4/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958443	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00558.hp2 HG02040.hp1 others(17): Show HG00544.hp1 HG00558.hp2 HG02040.hp1 HG02155.hp1 HG02723.hp1 NA18612.hp1 NA18945.hp1 NA18951.hp1 NA18952.hp2 NA18962.hp1 NA18974.hp2 NA18982.hp2 NA18995.hp2 NA19001.hp2 NA19003.hp1 NA19010.hp2 NA19068.hp1 NA19078.hp2 NA19083.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0013 a0001c0001t0014 a0001c0001t0043	a0001c0001t0001g0224 a0001c0001t0002g0178 a0001c0001t0003g0068 others(17): Show a0001c0001t0001g0224 a0001c0001t0002g0178 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0070 a0001c0001t0003g0120 a0001c0001t0003g0121 a0001c0001t0003g0124 a0001c0001t0003g0166 a0001c0001t0003g0167 a0001c0001t0003g0169 a0001c0001t0003g0206 a0001c0001t0003g0209 a0001c0001t0003g0261 a0001c0001t0003g0271 a0001c0001t0003g0309 a0001c0001t0013g0045 a0001c0001t0014g0284 a0001c0001t0014g0315 a0001c0001t0043g0171	20	340	0.0588	18	c.64- others(33): Show c.64-3200_64-3199insGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958445	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA18980.hp1 HG01978.hp2 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0139 a0001c0001t0010g0299 a0001c0001t0001g0139 a0001c0001t0010g0299	2	340	0.0059	18	c.64- others(33): Show c.64-3202_64-3201insGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45974522	T T	TATATATA others(11): Show TATATATATATATATATAG	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0044 a0001c0001t0003g0044	1	340	0.0029	18	c.64- others(35): Show c.64-19279_64-19278insCTATATATATATATATAT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC6_chr21_34663994_34723223	34716862	T T	TCTCTATC others(11): Show TCTCTATCACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0017 a0017	a0017c0035 a0017c0035	a0017c0035t0048 a0017c0035t0048	a0017c0035t0048g0025 a0017c0035t0048g0025	1	312	0.0032	18	c.38 others(27): Show c.381_*382insTCTATCACACACACACAC	CLIC6	ENSG00000159212.13	transcript	ENST00000349499.3	protein_coding	6/6	382	INFO_REALIGN_3_PRIME	chr21	TogoVar
CLIC6_chr21_34663994_34723223	34716862	T T	TCTCTCTC others(11): Show TCTCTCTCTCTATCACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0079 a0001c0007t0079	a0001c0007t0079g0006 a0001c0007t0079g0006	1	312	0.0032	18	c.38 others(27): Show c.381_*382insTCTCTCTCTATCACACAC	CLIC6	ENSG00000159212.13	transcript	ENST00000349499.3	protein_coding	6/6	382	INFO_REALIGN_3_PRIME	chr21	TogoVar
CLIP1_chr12_122266469_122427669	122276382	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp1 HG00609.hp2 others(26): Show HG00408.hp1 HG00423.hp1 HG00609.hp2 HG01099.hp1 HG01109.hp2 HG01433.hp1 HG01496.hp2 HG01884.hp2 HG01993.hp1 HG02071.hp1 HG02145.hp1 HG02258.hp1 HG02602.hp1 HG02630.hp1 HG02683.hp2 HG02717.hp2 HG02723.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp1 HG03471.hp2 HG03942.hp1 NA18522.hp2 NA18960.hp2 NA18985.hp2 NA19012.hp1	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0009 a0002c0002 others(1): Show a0001c0001 a0001c0009 a0002c0002 a0007c0008	a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 others(9): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0021 a0001c0009t0006 a0002c0002t0002 a0007c0008t0011	a0001c0001t0002g0168 a0001c0001t0002g0173 a0001c0001t0002g0181 others(26): Show a0001c0001t0002g0168 a0001c0001t0002g0173 a0001c0001t0002g0181 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0004g0016 a0001c0001t0004g0017 a0001c0001t0004g0018 a0001c0001t0004g0022 a0001c0001t0004g0025 a0001c0001t0004g0026 a0001c0001t0006g0046 a0001c0001t0006g0222 a0001c0001t0006g0223 a0001c0001t0006g0225 a0001c0001t0008g0073 a0001c0001t0009g0043 a0001c0001t0011g0230 a0001c0001t0013g0087 a0001c0001t0013g0088 a0001c0001t0014g0090 a0001c0001t0021g0172 a0001c0009t0006g0045 a0002c0002t0002g0092 a0002c0002t0002g0094 a0007c0008t0011g0226	29	234	0.1239	18	c.396 others(37): Show c.3966+1754_3966+1771dupTGTGTGTGTGTGTGTGTG	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	24/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122293002	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 NA19043.hp1 NA20300.hp2 HG02818.hp1 NA19043.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0016 a0001c0001t0004 a0001c0001t0005 a0001c0001t0016	a0001c0001t0004g0006 a0001c0001t0005g0037 a0001c0001t0016g0032 a0001c0001t0004g0006 a0001c0001t0005g0037 a0001c0001t0016g0032	3	234	0.0128	18	c.359 others(37): Show c.3595-4479_3595-4462dupTTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	20/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122299612	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02818.hp1 HG02258.hp2 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0005 a0001c0001t0007	a0001c0001t0005g0037 a0001c0001t0007g0007 a0001c0001t0005g0037 a0001c0001t0007g0007	2	234	0.0086	18	c.359 others(39): Show c.3594+10132_3594+10149dupTTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	20/25			chr12	TogoVar
CLIP1_chr12_122266469_122427669	122379943	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02572.hp2 HG02622.hp2 others(5): Show HG02132.hp1 HG02572.hp2 HG02622.hp2 HG02735.hp1 HG02970.hp1 HG03516.hp1 NA18971.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0001 a0001c0001t0002 a0001c0001t0006	a0001c0001t0001g0212 a0001c0001t0001g0217 a0001c0001t0001g0220 others(5): Show a0001c0001t0001g0212 a0001c0001t0001g0217 a0001c0001t0001g0220 a0001c0001t0002g0179 a0001c0001t0002g0183 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0006g0221	8	234	0.0342	18	c.85+ others(31): Show c.85+424_85+425insTTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	2/25			chr12	TogoVar
CLIP2_chr7_74284407_74410935	74349468	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19082.hp2 NA19082.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0080 a0002c0003t0002g0080	1	278	0.0036	18	c.679 others(35): Show c.679-4411_679-4410insATATATATATATATATAT	CLIP2	ENSG00000106665.16	transcript	ENST00000223398.11	protein_coding	3/16		INFO_REALIGN_3_PRIME	chr7	TogoVar
CLK4_chr5_178597664_178632050	178627223	C C	CCCCCCCC others(11): Show CCCCCCCCCGCCCCCCCCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp1 NA18944.hp1 NA19003.hp1 HG02027.hp1 NA18944.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0039 a0001c0001t0001g0043 a0001c0001t0001g0001 a0001c0001t0001g0039 a0001c0001t0001g0043	3	384	0.0078	18	c.-27 others(27): Show c.-279_-278insCGGGGGGGGCGGGGGGGG	CLK4	ENSG00000113240.14	transcript	ENST00000316308.9	protein_coding		174		chr5	TogoVar
CLK4_chr5_178597664_178632050	178627223	C C	CCCCCCCC others(11): Show CCCCCCCCGCCCCCCCCCG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18972.hp2 NA19067.hp2 NA18972.hp2 NA19067.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0181 a0001c0001t0001g0008 a0001c0001t0001g0181	2	384	0.0052	18	c.-27 others(27): Show c.-279_-278insCGGGGGGGGGCGGGGGGG	CLK4	ENSG00000113240.14	transcript	ENST00000316308.9	protein_coding		174		chr5	TogoVar
CLMN_chr14_95176940_95324908	95292443	C C	CCCACCCC others(11): Show CCCACCCCCACCCCCACCT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp2 HG00735.hp1 others(10): Show HG00099.hp2 HG00408.hp2 HG00735.hp1 HG01074.hp2 HG01167.hp1 HG01243.hp2 HG02135.hp1 HG02165.hp1 HG02257.hp1 HG03704.hp1 HG03710.hp1 HG04199.hp1 NA18998.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0009c0019	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0019 a0001c0001t0049 a0001c0002t0001 a0001c0003t0063 a0009c0019t0048	a0001c0001t0001g0076 a0001c0001t0001g0136 a0001c0001t0001g0137 others(10): Show a0001c0001t0001g0076 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0189 a0001c0001t0001g0212 a0001c0001t0003g0077 a0001c0001t0004g0108 a0001c0001t0006g0134 a0001c0001t0019g0080 a0001c0001t0049g0091 a0001c0002t0001g0014 a0001c0003t0063g0079 a0009c0019t0048g0078	13	276	0.0471	18	c.82+ others(35): Show c.82+27267_82+27268insAGGTGGGGGTGGGGGTGG	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMN_chr14_95176940_95324908	95292449	C C	CCCACCCC others(11): Show CCCACCCCCACCCCCACCT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0067 a0002c0004t0067	a0002c0004t0067g0246 a0002c0004t0067g0246	1	276	0.0036	18	c.82+ others(35): Show c.82+27261_82+27262insAGGTGGGGGTGGGGGTGG	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMN_chr14_95176940_95324908	95319909	G G	GGCGGGGC others(11): Show GGCGGGGCGCGGGCGGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0219 a0001c0001t0001g0219	1	276	0.0036	18	c.-11 others(27): Show c.-118_-117insGCCCCGCCCGCGCCCCGC	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding		2		chr14	TogoVar
CLMP_chr11_123064872_123200248	123107534	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0128 a0001c0001t0041g0128	1	254	0.0039	18	c.29- others(33): Show c.29-9600_29-9583dupAAAAAAAAAAAAAAAAAA	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150480	A A	AAAGAAAG others(11): Show AAAGAAAGAAAAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0148 a0001c0001t0035g0148	1	254	0.0039	18	c.28+ others(35): Show c.28+44432_28+44433insCCTTCCTTTTTCTTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150480	A A	AAAGAAGA others(11): Show AAAGAAGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0166 a0001c0001t0017g0166	1	254	0.0039	18	c.28+ others(35): Show c.28+44432_28+44433insCCTTCCTTCCTTCTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLN8_chr8_1758789_1791570	1763404	G G	GCCCCCCG others(11): Show GCCCCCCGCCGCCCCCCGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0168 a0001c0001t0057g0168	1	413	0.0024	18	c.-60 others(27): Show c.-605_-604insCCCCCCGCCGCCCCCCGC	CLN8	ENSG00000182372.10	transcript	ENST00000331222.6	protein_coding		384		chr8	TogoVar
CLNK_chr4_10481395_10689768	10535265	A A	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0064 a0001c0001t0020g0064	1	320	0.0031	18	c.603 others(35): Show c.603-2983_603-2982insCTTTCTTTCTTTCTTTCT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10578579	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02818.hp2 HG03516.hp1 HG00741.hp1 HG02818.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0016 a0001c0001t0001 a0001c0001t0002 a0001c0001t0016	a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0016g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0016g0043	3	320	0.0094	18	c.112 others(35): Show c.112+6330_112+6347dupAAAAAAAAAAAAAAAAAA	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	4/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10610033	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0012	1	320	0.0031	18	c.12- others(35): Show c.12-12002_12-11985dupAAAAAAAAAAAAAAAAAA	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	2/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10654384	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01192.hp2 NA19074.hp2 HG01192.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0250 a0001c0001t0004g0078 a0001c0001t0003g0250 a0001c0001t0004g0078	2	320	0.0063	18	c.11+ others(35): Show c.11+13457_11+13474dupATATATATATATATATAT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	2/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10655334	C C	CAGAGAGA others(11): Show CAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01993.hp2 HG00140.hp1 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0020 a0001c0001t0003 a0001c0001t0020	a0001c0001t0003g0091 a0001c0001t0020g0064 a0001c0001t0003g0091 a0001c0001t0020g0064	2	320	0.0063	18	c.11+ others(35): Show c.11+12507_11+12524dupCTCTCTCTCTCTCTCTCT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	2/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10677837	C C	CAATAATA others(11): Show CAATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01109.hp1 HG01934.hp2 others(16): Show HG00140.hp2 HG01109.hp1 HG01934.hp2 HG01993.hp1 HG02004.hp1 HG02027.hp1 HG02040.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG03927.hp2 HG04204.hp1 NA18945.hp2 NA18947.hp1 NA18970.hp2 NA19011.hp2 NA19074.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0009 a0001 a0003 a0009	a0001c0001 a0001c0010 a0003c0003 others(1): Show a0001c0001 a0001c0010 a0003c0003 a0009c0009	a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 others(9): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0024 a0001c0001t0037 a0001c0001t0038 a0001c0001t0045 a0001c0001t0050 a0001c0010t0005 a0003c0003t0007 a0003c0003t0048 a0009c0009t0026	a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 others(16): Show a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 a0001c0001t0003g0205 a0001c0001t0003g0206 a0001c0001t0003g0207 a0001c0001t0003g0208 a0001c0001t0003g0212 a0001c0001t0008g0213 a0001c0001t0010g0211 a0001c0001t0024g0272 a0001c0001t0037g0215 a0001c0001t0038g0214 a0001c0001t0045g0197 a0001c0001t0050g0209 a0001c0010t0005g0210 a0003c0003t0007g0116 a0003c0003t0048g0110 a0009c0009t0026g0274	19	320	0.0594	18	c.-43 others(35): Show c.-43+6813_-43+6830dupATTATTATTATTATTATT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	1/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10689745	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01358.hp2 HG03710.hp1 NA18962.hp2 others(2): Show HG01358.hp2 HG03710.hp1 NA18962.hp2 NA18994.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0005 a0001c0001t0037 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0037 a0001c0001t0043 a0001c0005t0008	a0001c0001t0001g0278 a0001c0001t0005g0246 a0001c0001t0037g0215 others(2): Show a0001c0001t0001g0278 a0001c0001t0005g0246 a0001c0001t0037g0215 a0001c0001t0043g0231 a0001c0005t0008g0224	5	320	0.0156	18	c.-51 others(29): Show c.-5121_-5120insAAAAAAAAAAAAAAAAAA	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding		4978		chr4	TogoVar
CLOCK_chr4_55422903_55551909	55445582	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18983.hp1 NA18988.hp2 others(1): Show NA18978.hp1 NA18983.hp1 NA18988.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0021 a0001c0001t0079 a0001c0001t0001 a0001c0001t0021 a0001c0001t0079	a0001c0001t0001g0111 a0001c0001t0021g0121 a0001c0001t0021g0146 others(1): Show a0001c0001t0001g0111 a0001c0001t0021g0121 a0001c0001t0021g0146 a0001c0001t0079g0149	4	338	0.0118	18	c.154 others(35): Show c.1540-815_1540-798dupAAAAAAAAAAAAAAAAAA	CLOCK	ENSG00000134852.15	transcript	ENST00000513440.6	protein_coding	18/22			chr4	TogoVar
CLOCK_chr4_55422903_55551909	55498603	C C	CTTATTAT others(11): Show CTTATTATTATTATTATTA	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0024 a0002c0003t0024	a0002c0003t0024g0289 a0002c0003t0024g0289	1	338	0.0030	18	c.-13 others(37): Show c.-135-9156_-135-9139dupTAATAATAATAATAATAA	CLOCK	ENSG00000134852.15	transcript	ENST00000513440.6	protein_coding	2/22			chr4	TogoVar
CLPSL2_chr6_35771598_35784552	35772719	A A	AGTATATA others(11): Show AGTATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	1	460	0.0022	18	c.-39 others(29): Show c.-3900_-3899insGTATATATATATATATAT	CLPSL2	ENSG00000196748.10	transcript	ENST00000403376.4	protein_coding		3878		chr6	TogoVar
CLPSL2_chr6_35771598_35784552	35772722	G G	GTATATAT others(11): Show GTATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp1 HG03130.hp1 NA19091.hp2 HG02723.hp1 HG03130.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0013 a0001c0001t0001g0023 a0001c0001t0001g0003 a0001c0001t0001g0013 a0001c0001t0001g0023	3	460	0.0065	18	c.-38 others(29): Show c.-3897_-3896insTATATATATATATATATA	CLPSL2	ENSG00000196748.10	transcript	ENST00000403376.4	protein_coding		3875		chr6	TogoVar
CLPTM1L_chr5_1312752_1350099	1342039	T T	TGTGTGTG others(11): Show TGTGTGTGTGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0327 a0001c0001t0001g0327	1	370	0.0027	18	c.264 others(33): Show c.264-180_264-179insGCGCGCGCGCACACACAC	CLPTM1L	ENSG00000049656.14	transcript	ENST00000320895.10	protein_coding	2/16			chr5	TogoVar
CLPTM1L_chr5_1312752_1350099	1345039	T T	TGGCGCCG others(11): Show TGGCGCCGCGGGATTCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02280.hp2 HG03540.hp2 HG02280.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0347 a0001c0001t0006g0348 a0001c0001t0006g0347 a0001c0001t0006g0348	2	370	0.0054	18	c.-21 others(27): Show c.-216_-199dupGGCGAATCCCGCGGCGCC	CLPTM1L	ENSG00000049656.14	transcript	ENST00000320895.10	protein_coding	1/17	199		chr5	TogoVar
CLSPN_chr1_35727112_35774978	35770462	T T	TATATATA others(11): Show TATATATATATATGTATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0232 a0001c0001t0006g0232	1	296	0.0034	18	c.-59 others(27): Show c.-593_-592insGTATACATATATATATAT	CLSPN	ENSG00000092853.14	transcript	ENST00000318121.8	protein_coding		485		chr1	TogoVar

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