Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNNM2_chr10_102913294_103095222	102976611	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0055 a0002c0004t0055	a0002c0004t0055g0216 a0002c0004t0055g0216	1	270	0.0037	18	c.162 others(39): Show c.1621+56521_1621+56538dupTTTTTTTTTTTTTTTTTT	CNNM2	ENSG00000148842.18	transcript	ENST00000369878.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CNNM2_chr10_102913294_103095222	102992273	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02155.hp2 HG02257.hp1 NA18747.hp2 others(1): Show HG02155.hp2 HG02257.hp1 NA18747.hp2 NA19084.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0004 a0001c0002 a0001c0003 a0002c0004	a0001c0002t0006 a0001c0003t0001 a0002c0004t0055 a0001c0002t0006 a0001c0003t0001 a0002c0004t0055	a0001c0002t0006g0117 a0001c0002t0006g0209 a0001c0003t0001g0171 others(1): Show a0001c0002t0006g0117 a0001c0002t0006g0209 a0001c0003t0001g0171 a0002c0004t0055g0216	4	270	0.0148	18	c.162 others(39): Show c.1622-57433_1622-57416dupTTTTTTTTTTTTTTTTTT	CNNM2	ENSG00000148842.18	transcript	ENST00000369878.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CNNM2_chr10_102913294_103095222	103017963	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02486.hp2 HG02622.hp1 others(3): Show HG02055.hp2 HG02486.hp2 HG02622.hp1 HG02896.hp2 NA18995.hp1 NA19011.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0004 a0001c0002 a0002c0004	a0001c0002t0003 a0002c0004t0025 a0002c0004t0028 a0001c0002t0003 a0002c0004t0025 a0002c0004t0028	a0001c0002t0003g0237 a0001c0002t0003g0239 a0001c0002t0003g0251 others(3): Show a0001c0002t0003g0237 a0001c0002t0003g0239 a0001c0002t0003g0251 a0002c0004t0025g0195 a0002c0004t0028g0196 a0002c0004t0028g0215	6	270	0.0222	18	c.162 others(39): Show c.1622-31743_1622-31726dupAAAAAAAAAAAAAAAAAA	CNNM2	ENSG00000148842.18	transcript	ENST00000369878.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CNNM2_chr10_102913294_103095222	103034972	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00609.hp1 HG00639.hp2 others(15): Show HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG01257.hp1 HG02056.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02300.hp1 HG02647.hp1 HG02809.hp2 HG03041.hp1 HG03225.hp1 NA18994.hp1 NA19007.hp2 NA20805.hp1	a0001 a0001	a0001c0002 a0001c0010 a0001c0002 a0001c0010	a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 others(9): Show a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 a0001c0002t0009 a0001c0002t0013 a0001c0002t0044 a0001c0002t0052 a0001c0002t0106 a0001c0002t0107 a0001c0002t0108 a0001c0010t0067	a0001c0002t0002g0245 a0001c0002t0003g0225 a0001c0002t0003g0227 others(15): Show a0001c0002t0002g0245 a0001c0002t0003g0225 a0001c0002t0003g0227 a0001c0002t0003g0242 a0001c0002t0004g0256 a0001c0002t0004g0261 a0001c0002t0004g0262 a0001c0002t0004g0263 a0001c0002t0004g0265 a0001c0002t0006g0213 a0001c0002t0009g0244 a0001c0002t0013g0257 a0001c0002t0044g0243 a0001c0002t0052g0260 a0001c0002t0106g0228 a0001c0002t0107g0235 a0001c0002t0108g0249 a0001c0010t0067g0194	18	270	0.0667	18	c.162 others(39): Show c.1622-14734_1622-14717dupAAAAAAAAAAAAAAAAAA	CNNM2	ENSG00000148842.18	transcript	ENST00000369878.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
CNNM2_chr10_102913294_103095222	103087140	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0075 a0001c0001t0075	a0001c0001t0075g0038 a0001c0001t0075g0038	1	270	0.0037	18	c.99 others(29): Show c.9975_*9992dupTTTTTTTTTTTTTTTTTT	CNNM2	ENSG00000148842.18	transcript	ENST00000369878.9	protein_coding	8/8	9993	INFO_REALIGN_3_PRIME	chr10	TogoVar
CNNM4_chr2_96755902_96816874	96806535	A A	ACACACAC others(11): Show ACACACACACACACACGCG	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0146 a0001c0001t0002g0146	1	270	0.0037	18	c.194 others(37): Show c.1949-2025_1949-2024insACACACACACACACGCGC	CNNM4	ENSG00000158158.12	transcript	ENST00000377075.3	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT10_chr3_32680188_32778875	32741768	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02602.hp1 HG02698.hp2 others(7): Show HG02015.hp2 HG02602.hp1 HG02698.hp2 NA18955.hp2 NA18960.hp2 NA18962.hp2 NA18993.hp1 NA19009.hp1 NA19054.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(7): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0022	10	354	0.0283	18	c.159 others(37): Show c.1595+4293_1595+4294insAAAAAAAAAAAAAAAAAA	CNOT10	ENSG00000182973.20	transcript	ENST00000328834.10	protein_coding	13/18		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNOT1_chr16_58514951_58634826	58539480	C C	CACACACA others(11): Show CACACACACACACACACAG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp2 HG00639.hp1 others(33): Show HG00323.hp2 HG00597.hp2 HG00639.hp1 HG00673.hp1 HG00738.hp1 HG01258.hp2 HG01496.hp1 HG01978.hp1 HG02071.hp1 HG02683.hp2 HG02735.hp1 HG02976.hp1 HG03225.hp1 HG03704.hp1 HG03834.hp1 HG04204.hp2 NA18941.hp2 NA18942.hp2 NA18954.hp1 NA18961.hp2 NA18962.hp2 NA18965.hp2 NA18979.hp2 NA18981.hp1 NA18990.hp1 NA18997.hp1 NA19004.hp1 NA19011.hp2 NA19070.hp2 NA19074.hp1 NA19083.hp1 NA19085.hp2 NA19087.hp1 NA19088.hp2 NA19090.hp2 NA19240.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0001c0007 a0001c0017 others(2): Show a0001c0002 a0001c0007 a0001c0017 a0002c0009 a0004c0016	a0001c0002t0001 a0001c0007t0001 a0001c0017t0001 others(2): Show a0001c0002t0001 a0001c0007t0001 a0001c0017t0001 a0002c0009t0001 a0004c0016t0001	a0001c0002t0001g0005 a0001c0002t0001g0062 a0001c0002t0001g0071 others(33): Show a0001c0002t0001g0005 a0001c0002t0001g0062 a0001c0002t0001g0071 a0001c0002t0001g0080 a0001c0002t0001g0098 a0001c0002t0001g0100 a0001c0002t0001g0102 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0110 a0001c0002t0001g0111 a0001c0002t0001g0112 a0001c0002t0001g0113 a0001c0002t0001g0114 a0001c0002t0001g0115 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0118 a0001c0002t0001g0119 a0001c0002t0001g0120 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0124 a0001c0002t0001g0126 a0001c0002t0001g0127 a0001c0002t0001g0128 a0001c0002t0001g0129 a0001c0002t0001g0130 a0001c0002t0001g0133 a0001c0002t0001g0294 a0001c0002t0001g0296 a0001c0007t0001g0088 a0001c0007t0001g0125 a0001c0017t0001g0073 a0002c0009t0001g0123 a0004c0016t0001g0139	36	308	0.1169	18	c.499 others(35): Show c.4992+287_4992+288insCTGTGTGTGTGTGTGTGT	CNOT1	ENSG00000125107.19	transcript	ENST00000317147.10	protein_coding	35/48			chr16	TogoVar
CNOT3_chr19_54132762_54160681	54133202	A A	ACTAATCC others(11): Show ACTAATCCGCCTGCCTCGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	223	0.0045	18	c.-48 others(29): Show c.-4842_-4841insCTAATCCGCCTGCCTCGT	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding		4559		chr19	TogoVar
CNOT3_chr19_54132762_54160681	54142433	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00609.hp2 others(51): Show HG00099.hp1 HG00280.hp2 HG00609.hp2 HG00621.hp1 HG00673.hp2 HG01071.hp2 HG01074.hp1 HG01975.hp1 HG01978.hp1 HG02004.hp2 HG02015.hp1 HG02129.hp2 HG02132.hp2 HG02145.hp2 HG02165.hp2 HG02273.hp2 HG02293.hp1 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02723.hp1 HG02809.hp2 HG02896.hp1 HG02922.hp2 HG02976.hp2 HG03041.hp2 HG03195.hp1 HG03225.hp1 HG03239.hp1 HG03453.hp2 HG03486.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03688.hp2 HG03704.hp1 HG03834.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 NA18612.hp1 NA18747.hp2 NA18940.hp1 NA18979.hp1 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA19011.hp1 NA19078.hp2 NA19084.hp1 NA19088.hp1 NA20129.hp1 NA20129.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0008 others(3): Show a0001c0001 a0001c0002 a0001c0008 a0001c0013 a0003c0010 a0004c0011	a0001c0001t0001 a0001c0002t0001 a0001c0002t0005 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0005 a0001c0008t0001 a0001c0013t0001 a0003c0010t0001 a0004c0011t0001	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0015 others(31): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0129 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0002t0001g0001 a0001c0002t0001g0005 a0001c0002t0001g0013 a0001c0002t0001g0036 a0001c0002t0001g0120 a0001c0002t0001g0131 a0001c0002t0001g0132 a0001c0002t0001g0134 a0001c0002t0001g0135 a0001c0002t0001g0143 a0001c0002t0001g0145 a0001c0002t0001g0146 a0001c0002t0001g0147 a0001c0002t0005g0130 a0001c0008t0001g0068 a0001c0013t0001g0136 a0003c0010t0001g0144 a0004c0011t0001g0133	54	223	0.2422	18	c.-50 others(33): Show c.-50-495_-50-478dupACACACACACACACACAC	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr19	TogoVar
CNOT4_chr7_135356795_135515102	135453826	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18946.hp1 NA18971.hp1 NA18946.hp1 NA18971.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0055 a0002c0002t0001g0082 a0002c0002t0001g0055 a0002c0002t0001g0082	2	362	0.0055	18	c.-92 others(37): Show c.-92-15421_-92-15404dupTATATATATATATATATA	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135472514	A A	AAAAAATA others(11): Show AAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0193 a0001c0001t0001g0193	1	362	0.0028	18	c.-92 others(37): Show c.-92-34092_-92-34091insATATATATATATATTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT6L_chr4_77708387_77824368	77768474	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0040 a0001c0001t0002g0040	1	328	0.0031	18	c.400 others(35): Show c.400+4589_400+4606dupATATATATATATATATAT	CNOT6L	ENSG00000138767.14	transcript	ENST00000504123.7	protein_coding	4/11			chr4	TogoVar
CNOT6L_chr4_77708387_77824368	77807276	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp2 HG02922.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0326 a0001c0001t0001g0214 a0001c0001t0001g0326	2	328	0.0061	18	c.5+1 others(33): Show c.5+12027_5+12028insTTTTTTTTTTTTTTTTTT	CNOT6L	ENSG00000138767.14	transcript	ENST00000504123.7	protein_coding	1/11			chr4	TogoVar
CNOT6L_chr4_77708387_77824368	77819049	G G	GACACACA others(11): Show GACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01256.hp2 HG01993.hp1 others(7): Show HG01255.hp1 HG01256.hp2 HG01993.hp1 HG02572.hp1 HG02809.hp2 HG02922.hp2 HG03209.hp2 HG03540.hp2 NA18948.hp2 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 a0001c0001t0001 a0001c0001t0005 a0001c0001t0008	a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 others(7): Show a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0221 a0001c0001t0005g0220 a0001c0001t0008g0212 a0001c0001t0008g0213	10	328	0.0305	18	c.5+2 others(29): Show c.5+237_5+254dupGTGTGTGTGTGTGTGTGT	CNOT6L	ENSG00000138767.14	transcript	ENST00000504123.7	protein_coding	1/11			chr4	TogoVar
CNOT6_chr5_180489379_180583358	180508312	A A	AATTTGTT others(11): Show AATTTGTTTTTTTAGTATG	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0003 a0001c0001t0061g0003	1	334	0.0030	18	c.-3+ others(35): Show c.-3+13551_-3+13568dupTTTGTTTTTTTAGTATGA	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180533312	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG06807.hp1 NA19240.hp1 HG02717.hp2 HG06807.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0103 a0001c0001t0013g0106 a0001c0001t0013g0107 a0001c0001t0013g0103 a0001c0001t0013g0106 a0001c0001t0013g0107	3	334	0.0090	18	c.112 others(35): Show c.112+3938_112+3955dupATATATATATATATATAT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180538686	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp2 HG02723.hp2 others(5): Show HG02165.hp1 HG02165.hp2 HG02723.hp2 NA18941.hp2 NA18942.hp2 NA18967.hp1 NA18970.hp2 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0052 a0001c0001t0002 a0001c0001t0052	a0001c0001t0002g0073 a0001c0001t0002g0077 a0001c0001t0002g0087 others(5): Show a0001c0001t0002g0073 a0001c0001t0002g0077 a0001c0001t0002g0087 a0001c0001t0002g0088 a0001c0001t0002g0091 a0001c0001t0002g0110 a0001c0001t0002g0231 a0001c0001t0052g0080	8	334	0.0240	18	c.112 others(35): Show c.112+9311_112+9328dupTATATATATATATATATA	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180561356	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0084 a0001c0001t0002g0084	1	334	0.0030	18	c.386 others(35): Show c.386-3113_386-3096dupGTGTGTGTGTGTGTGTGT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180582457	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp2 HG03540.hp1 HG02451.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0041 a0001c0001t0040 a0001c0001t0041	a0001c0001t0040g0100 a0001c0001t0041g0101 a0001c0001t0040g0100 a0001c0001t0041g0101	2	334	0.0060	18	c.82 others(29): Show c.8257_*8258insTGTGTGTGTGTGTGTGTG	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding		4100		chr5	TogoVar
CNPY1_chr7_155496129_155551559	155507471	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02896.hp2 HG02451.hp1 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0075 a0001c0001t0032g0261 a0001c0001t0032g0075 a0001c0001t0032g0261	2	426	0.0047	18	c.304 others(33): Show c.304-373_304-356dupTTTTTTTTTTTTTTTTTT	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	3/4			chr7	TogoVar
CNPY1_chr7_155496129_155551559	155527054	C C	CTTTCTTT others(11): Show CTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(49): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00609.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01243.hp2 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01952.hp2 HG02027.hp1 HG02056.hp2 HG02083.hp2 HG02155.hp1 HG02165.hp1 HG02559.hp1 HG03017.hp1 HG04204.hp1 NA18952.hp1 NA18953.hp2 NA18957.hp1 NA18963.hp2 NA18964.hp1 NA18966.hp2 NA18967.hp1 NA18969.hp2 NA18972.hp1 NA18972.hp2 NA18974.hp1 NA18982.hp2 NA18985.hp1 NA18989.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA19002.hp1 NA19003.hp1 NA19005.hp1 NA19007.hp1 NA19010.hp1 NA19012.hp2 NA19054.hp1 NA19062.hp1 NA19068.hp1 NA19079.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(12): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0025 a0001c0002t0003 a0001c0002t0008 a0001c0002t0018 a0001c0003t0001 a0001c0003t0002 a0001c0003t0006 a0001c0003t0007 a0001c0004t0003	a0001c0001t0001g0077 a0001c0001t0001g0094 a0001c0001t0001g0187 others(48): Show a0001c0001t0001g0077 a0001c0001t0001g0094 a0001c0001t0001g0187 a0001c0001t0001g0194 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0206 a0001c0001t0004g0120 a0001c0001t0004g0183 a0001c0001t0004g0209 a0001c0001t0004g0215 a0001c0001t0006g0057 a0001c0001t0007g0099 a0001c0001t0007g0101 a0001c0001t0007g0186 a0001c0001t0007g0210 a0001c0001t0007g0224 a0001c0001t0009g0181 a0001c0001t0009g0216 a0001c0001t0009g0218 a0001c0001t0009g0227 a0001c0001t0009g0237 a0001c0001t0011g0003 a0001c0001t0011g0052 a0001c0001t0011g0059 a0001c0001t0011g0061 a0001c0001t0025g0217 a0001c0002t0003g0319 a0001c0002t0003g0348 a0001c0002t0008g0328 a0001c0002t0018g0021 a0001c0003t0001g0121 a0001c0003t0001g0124 a0001c0003t0001g0188 a0001c0003t0001g0189 a0001c0003t0001g0193 a0001c0003t0001g0200 a0001c0003t0001g0219 a0001c0003t0001g0220 a0001c0003t0001g0242 a0001c0003t0001g0282 a0001c0003t0001g0283 a0001c0003t0002g0284 a0001c0003t0006g0039 a0001c0003t0006g0046 a0001c0003t0006g0058 a0001c0003t0007g0190 a0001c0004t0003g0290 a0001c0004t0003g0307 a0001c0004t0003g0308 a0001c0004t0003g0315	52	426	0.1221	18	c.100 others(37): Show c.100-17958_100-17957insAAGAAAGAAAGAAAGAAA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNPY1_chr7_155496129_155551559	155527056	T T	TTCTTTCT others(11): Show TTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG03834.hp2 NA18979.hp1 HG03834.hp2 NA18979.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0008 a0001c0004t0003 a0001c0002t0008 a0001c0004t0003	a0001c0002t0008g0313 a0001c0004t0003g0337 a0001c0002t0008g0313 a0001c0004t0003g0337	2	426	0.0047	18	c.100 others(37): Show c.100-17960_100-17959insGAAAGAAAGAAAGAAAGA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNR2_chr1_23865515_23918362	23914062	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG02809.hp1 HG02818.hp2 others(4): Show HG01884.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp1 HG03209.hp2 HG03453.hp1 HG03540.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0001 a0001c0001t0028 a0002c0002t0063 others(2): Show a0001c0001t0001 a0001c0001t0028 a0002c0002t0063 a0004c0004t0013 a0004c0004t0020	a0001c0001t0001g0257 a0001c0001t0028g0259 a0002c0002t0063g0258 others(4): Show a0001c0001t0001g0257 a0001c0001t0028g0259 a0002c0002t0063g0258 a0004c0004t0013g0260 a0004c0004t0013g0261 a0004c0004t0013g0263 a0004c0004t0020g0262	7	268	0.0261	18	c.-86 others(27): Show c.-863_-862insACACACACACACACACAC	CNR2	ENSG00000188822.8	transcript	ENST00000374472.5	protein_coding		701		chr1	TogoVar
CNRIP1_chr2_68288010_68324949	68306124	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG02976.hp1 HG03927.hp1 others(1): Show HG01069.hp2 HG02976.hp1 HG03927.hp1 NA18986.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0151 a0001c0001t0001g0199 a0001c0002t0001g0345 others(1): Show a0001c0001t0001g0151 a0001c0001t0001g0199 a0001c0002t0001g0345 a0001c0002t0001g0351	4	424	0.0094	18	c.330 others(37): Show c.330+11015_330+11032dupTTTTTTTTTTTTTTTTTT	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246586111	A A	ATATATGT others(11): Show ATATATGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0037 a0003c0003t0001g0037	1	320	0.0031	18	c.-51 others(35): Show c.-51-5400_-51-5399insATATGTGTGTGTGTGTGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246603508	T T	TTTAAACA others(11): Show TTTAAACAAAGTTATATGC	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0302 a0001c0001t0002g0302	1	320	0.0031	18	c.379 others(37): Show c.379+11568_379+11585dupTTAAACAAAGTTATATGC	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246642132	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02976.hp1 HG03139.hp1 others(2): Show HG02818.hp1 HG02976.hp1 HG03139.hp1 HG03516.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0001t0001 a0001c0001t0004 a0001c0001t0009	a0001c0001t0001g0025 a0001c0001t0001g0169 a0001c0001t0004g0026 others(2): Show a0001c0001t0001g0025 a0001c0001t0001g0169 a0001c0001t0004g0026 a0001c0001t0009g0010 a0001c0001t0009g0012	5	320	0.0156	18	c.937 others(31): Show c.937+95_937+96insTTTTTTTTTTTTTTTTTT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	8/10			chr1	TogoVar
CNTLN_chr9_17130040_17508923	17185771	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG01884.hp2 HG02257.hp2 others(16): Show HG00423.hp1 HG01884.hp2 HG02257.hp2 HG02559.hp2 HG02622.hp2 HG02723.hp1 HG02809.hp1 HG02896.hp1 HG02897.hp2 HG02965.hp2 HG03492.hp1 HG03579.hp2 HG03834.hp2 NA18906.hp1 NA18978.hp2 NA19003.hp2 NA19004.hp1 NA19043.hp2 NA20129.hp1	a0001 a0002 a0005 others(2): Show a0001 a0002 a0005 a0007 a0016	a0001c0004 a0002c0006 a0002c0013 others(6): Show a0001c0004 a0002c0006 a0002c0013 a0005c0005 a0007c0011 a0007c0022 a0007c0049 a0007c0050 a0016c0021	a0001c0004t0001 a0002c0006t0002 a0002c0013t0002 others(9): Show a0001c0004t0001 a0002c0006t0002 a0002c0013t0002 a0005c0005t0001 a0007c0011t0002 a0007c0011t0004 a0007c0011t0011 a0007c0022t0005 a0007c0049t0004 a0007c0050t0007 a0016c0021t0002 a0016c0021t0008	a0001c0004t0001g0014 a0002c0006t0002g0105 a0002c0013t0002g0209 others(16): Show a0001c0004t0001g0014 a0002c0006t0002g0105 a0002c0013t0002g0209 a0002c0013t0002g0210 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0091 a0005c0005t0001g0093 a0005c0005t0001g0097 a0007c0011t0002g0109 a0007c0011t0004g0110 a0007c0011t0004g0113 a0007c0011t0011g0112 a0007c0022t0005g0107 a0007c0022t0005g0117 a0007c0049t0004g0116 a0007c0050t0007g0118 a0016c0021t0002g0111 a0016c0021t0008g0115	19	218	0.0872	18	c.450 others(37): Show c.450-40418_450-40401dupGTGTGTGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATATT others(11): Show TATATATTATATATATATA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0001	a0004c0003t0001g0179 a0004c0003t0001g0179	1	218	0.0046	18	c.134 others(37): Show c.1341+3112_1341+3113insATATATTATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATTAT others(11): Show TATATTATATATATATATA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01255.hp1 HG01928.hp2 others(8): Show HG00639.hp1 HG01255.hp1 HG01928.hp2 HG02615.hp2 HG02622.hp1 HG03471.hp1 HG03516.hp1 HG03540.hp1 NA18989.hp1 NA19062.hp1 NA19064.hp2	a0004 a0008 a0012 a0004 a0008 a0012	a0004c0003 a0004c0020 a0008c0009 others(1): Show a0004c0003 a0004c0020 a0008c0009 a0012c0039	a0004c0003t0001 a0004c0003t0002 a0004c0003t0003 others(3): Show a0004c0003t0001 a0004c0003t0002 a0004c0003t0003 a0004c0020t0005 a0008c0009t0002 a0012c0039t0003	a0004c0003t0001g0149 a0004c0003t0001g0189 a0004c0003t0001g0199 others(8): Show a0004c0003t0001g0149 a0004c0003t0001g0189 a0004c0003t0001g0199 a0004c0003t0001g0217 a0004c0003t0002g0173 a0004c0003t0003g0137 a0004c0020t0005g0145 a0008c0009t0002g0186 a0008c0009t0002g0187 a0008c0009t0002g0208 a0012c0039t0003g0150	11	218	0.0505	18	c.134 others(37): Show c.1341+3112_1341+3113insATATTATATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATTTTAT others(11): Show TATTTTATATATATATATA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0009 a0009	a0009c0010 a0009c0010	a0009c0010t0002 a0009c0010t0002	a0009c0010t0002g0049 a0009c0010t0002g0049	1	218	0.0046	18	c.134 others(37): Show c.1341+3112_1341+3113insATTTTATATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17359717	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0001	a0004c0003t0001g0179 a0004c0003t0001g0179	1	218	0.0046	18	c.188 others(37): Show c.1887-6895_1887-6894insAAAAAAAAAAAAAAAAAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40822148	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00673.hp2 HG00735.hp2 others(31): Show HG00408.hp2 HG00673.hp2 HG00735.hp2 HG00741.hp2 HG01070.hp2 HG01074.hp2 HG01123.hp2 HG01256.hp1 HG01258.hp2 HG01346.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02148.hp2 HG02486.hp2 HG02559.hp2 HG02615.hp1 HG02895.hp1 NA18944.hp1 NA18959.hp2 NA18961.hp1 NA18970.hp2 NA18973.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18989.hp1 NA19006.hp1 NA19007.hp1 NA19012.hp2 NA19065.hp1 NA19079.hp2 NA19083.hp1 NA19090.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0023 a0001c0003t0020 a0001c0005t0002 a0005c0010t0002	a0001c0001t0001g0177 a0001c0001t0002g0100 a0001c0001t0002g0146 others(31): Show a0001c0001t0001g0177 a0001c0001t0002g0100 a0001c0001t0002g0146 a0001c0001t0002g0220 a0001c0002t0001g0014 a0001c0002t0001g0032 a0001c0002t0001g0033 a0001c0002t0001g0035 a0001c0002t0001g0036 a0001c0002t0001g0039 a0001c0002t0001g0047 a0001c0002t0001g0083 a0001c0002t0001g0088 a0001c0002t0001g0099 a0001c0002t0001g0109 a0001c0002t0001g0111 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0142 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0149 a0001c0002t0001g0157 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0164 a0001c0002t0002g0221 a0001c0002t0003g0075 a0001c0002t0023g0144 a0001c0003t0020g0165 a0001c0005t0002g0081 a0001c0005t0002g0173 a0005c0010t0002g0026	34	230	0.1478	18	c.-76 others(37): Show c.-76-86202_-76-86185dupTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40867880	T T	TTTATTAT others(11): Show TTTATTATTATTATTATTA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02559.hp1 others(2): Show HG01167.hp2 HG01169.hp2 HG02559.hp1 HG03209.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0004t0001 a0001c0004t0007 a0001c0002t0001 a0001c0004t0001 a0001c0004t0007	a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0004t0001g0217 others(2): Show a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0004t0001g0217 a0001c0004t0007g0213 a0001c0004t0007g0214	5	230	0.0217	18	c.-76 others(37): Show c.-76-40465_-76-40448dupATTATTATTATTATTATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40924881	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03225.hp2 HG03486.hp2 others(1): Show HG03098.hp1 HG03225.hp2 HG03486.hp2 HG03579.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0009 a0001c0002 a0001c0005 a0001c0009	a0001c0002t0001 a0001c0005t0002 a0001c0009t0004 a0001c0002t0001 a0001c0005t0002 a0001c0009t0004	a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0005t0002g0207 others(1): Show a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0005t0002g0207 a0001c0009t0004g0046	4	230	0.0174	18	c.496 others(33): Show c.496+246_496+247insTATATATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01346.hp2 HG02109.hp2 others(3): Show HG00741.hp1 HG01346.hp2 HG02109.hp2 HG02559.hp1 HG03654.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0003 a0001c0001t0004 a0001c0003t0003 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0003t0003 a0001c0003t0005 a0001c0004t0001 a0001c0005t0002	a0001c0001t0003g0224 a0001c0001t0004g0179 a0001c0003t0003g0065 others(3): Show a0001c0001t0003g0224 a0001c0001t0004g0179 a0001c0003t0003g0065 a0001c0003t0005g0082 a0001c0004t0001g0217 a0001c0005t0002g0210	6	230	0.0261	18	c.298 others(39): Show c.2981-16508_2981-16491dupATATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41056862	A A	ATTATAAA others(11): Show ATTATAAATATTTGGATAT	intron_variant intron_variant	MODIFIER	HG02273.hp2 HG03098.hp1 HG02273.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0004 a0001c0009t0004 a0001c0001t0004 a0001c0009t0004	a0001c0001t0004g0115 a0001c0009t0004g0046 a0001c0001t0004g0115 a0001c0009t0004g0046	2	230	0.0087	18	c.298 others(39): Show c.2981-13085_2981-13068dupTGGATATTTATAAATATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN3_chr3_74257568_74619659	74366778	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01884.hp1 HG02257.hp2 others(2): Show HG01346.hp1 HG01884.hp1 HG02257.hp2 HG02486.hp1 HG03098.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0001c0001 a0002c0005	a0001c0001t0002 a0001c0001t0004 a0001c0001t0009 others(1): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0009 a0002c0005t0002	a0001c0001t0002g0082 a0001c0001t0004g0092 a0001c0001t0009g0084 others(2): Show a0001c0001t0002g0082 a0001c0001t0004g0092 a0001c0001t0009g0084 a0001c0001t0009g0086 a0002c0005t0002g0066	5	174	0.0287	18	c.947 others(35): Show c.947-1077_947-1076insTATATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366778	G G	GTATGTAT others(11): Show GTATGTATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02559.hp2 HG02615.hp2 HG02145.hp1 HG02559.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0022 a0001c0001t0002 a0001c0001t0022	a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0022g0013 a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0022g0013	3	174	0.0172	18	c.947 others(35): Show c.947-1077_947-1076insTATATATATATATACATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01884.hp2 HG01934.hp2 others(8): Show HG01257.hp2 HG01884.hp2 HG01934.hp2 HG02129.hp2 HG02257.hp1 HG03139.hp1 HG03579.hp2 NA18945.hp2 NA18959.hp2 NA19077.hp1 NA19091.hp2	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0001c0008 a0002c0005 others(1): Show a0001c0001 a0001c0008 a0002c0005 a0010c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0008t0015 a0002c0005t0005 a0010c0013t0003	a0001c0001t0001g0112 a0001c0001t0001g0141 a0001c0001t0002g0062 others(8): Show a0001c0001t0001g0112 a0001c0001t0001g0141 a0001c0001t0002g0062 a0001c0001t0003g0042 a0001c0001t0004g0102 a0001c0001t0004g0138 a0001c0001t0008g0001 a0001c0001t0008g0006 a0001c0008t0015g0030 a0002c0005t0005g0148 a0010c0013t0003g0027	11	174	0.0632	18	c.947 others(35): Show c.947-1096_947-1079dupTATATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTATAT others(11): Show GTGTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02280.hp1 HG02647.hp2 others(4): Show HG02027.hp2 HG02280.hp1 HG02647.hp2 NA18998.hp2 NA19043.hp2 NA19085.hp2 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0019 others(2): Show a0001c0001 a0001c0002 a0001c0019 a0003c0003 a0003c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0002t0004 a0001c0019t0016 a0003c0003t0005 a0003c0007t0002	a0001c0001t0001g0111 a0001c0001t0003g0060 a0001c0001t0004g0090 others(4): Show a0001c0001t0001g0111 a0001c0001t0003g0060 a0001c0001t0004g0090 a0001c0002t0004g0119 a0001c0019t0016g0135 a0003c0003t0005g0161 a0003c0007t0002g0041	7	174	0.0402	18	c.947 others(35): Show c.947-1079_947-1078insTATATATATATATATACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTGTAT others(11): Show GTGTGTATATATATATATA	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0005 a0005	a0005c0022 a0005c0022	a0005c0022t0002 a0005c0022t0002	a0005c0022t0002g0053 a0005c0022t0002g0053	1	174	0.0058	18	c.947 others(35): Show c.947-1079_947-1078insTATATATATATATACACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74558982	C C	CAATAATA others(11): Show CAATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02145.hp1 others(7): Show HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02257.hp2 HG02258.hp2 HG02559.hp2 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03486.hp2	a0001 a0003 a0008 a0001 a0003 a0008	a0001c0001 a0003c0003 a0003c0007 others(1): Show a0001c0001 a0003c0003 a0003c0007 a0008c0016	a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 others(4): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0003c0003t0002 a0003c0007t0007 a0008c0016t0007	a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 others(7): Show a0001c0001t0002g0069 a0001c0001t0002g0072 a0001c0001t0002g0082 a0001c0001t0004g0138 a0001c0001t0008g0006 a0001c0001t0009g0084 a0001c0001t0009g0086 a0003c0003t0002g0081 a0003c0007t0007g0073 a0008c0016t0007g0080	10	174	0.0575	18	c.-80 others(37): Show c.-80-37808_-80-37791dupATTATTATTATTATTATT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74575606	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01071.hp2 HG03486.hp1 others(1): Show HG00323.hp2 HG01071.hp2 HG03486.hp1 NA19240.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0011 a0001c0001 a0003c0003 a0004c0011	a0001c0001t0002 a0001c0001t0026 a0003c0003t0007 others(1): Show a0001c0001t0002 a0001c0001t0026 a0003c0003t0007 a0004c0011t0002	a0001c0001t0002g0046 a0001c0001t0026g0093 a0003c0003t0007g0034 others(1): Show a0001c0001t0002g0046 a0001c0001t0026g0093 a0003c0003t0007g0034 a0004c0011t0002g0045	4	174	0.0230	18	c.-81 others(37): Show c.-81+38767_-81+38784dupGTGTGTGTGTGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2233099	T T	TGATTATA others(11): Show TGATTATATTTTTAAACTA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0102 a0001c0002t0002g0102	1	116	0.0086	18	c.-14 others(41): Show c.-144-106078_-144-106061dupGATTATATTTTTAAACTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2238735	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00738.hp2 HG01169.hp2 others(21): Show HG00639.hp1 HG00738.hp2 HG01169.hp2 HG01256.hp1 HG01258.hp2 HG01261.hp2 HG01361.hp1 HG02132.hp1 HG02132.hp2 HG02257.hp2 HG02258.hp2 HG02523.hp1 HG02602.hp2 HG02622.hp1 HG02683.hp2 HG02809.hp2 HG02886.hp2 HG02897.hp1 HG02965.hp2 HG03209.hp2 HG03654.hp1 HG06807.hp1 NA18990.hp1 NA20300.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0008	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0007 a0001c0021 a0002c0014 a0003c0019 a0004c0011 a0008c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0002t0005 a0001c0002t0012 a0001c0003t0001 a0001c0003t0003 a0001c0005t0001 a0001c0005t0006 a0001c0007t0003 a0001c0007t0004 a0001c0021t0002 a0002c0014t0001 a0003c0019t0002 a0004c0011t0003 a0008c0026t0017	a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0002g0030 others(21): Show a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0002g0030 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0008g0089 a0001c0002t0005g0002 a0001c0002t0012g0013 a0001c0003t0001g0014 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0003g0015 a0001c0005t0001g0092 a0001c0005t0006g0032 a0001c0007t0003g0034 a0001c0007t0004g0066 a0001c0021t0002g0025 a0002c0014t0001g0016 a0003c0019t0002g0031 a0004c0011t0003g0065 a0004c0011t0003g0111 a0008c0026t0017g0047	24	116	0.2069	18	c.-14 others(41): Show c.-144-100433_-144-100432insTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2294288	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00738.hp1 HG01256.hp2 others(2): Show HG00140.hp1 HG00738.hp1 HG01256.hp2 HG02523.hp2 HG02818.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0017	a0001c0001t0001 a0001c0001t0002 a0001c0002t0007 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0007 a0001c0004t0002 a0002c0017t0008	a0001c0001t0001g0099 a0001c0001t0002g0055 a0001c0002t0007g0112 others(2): Show a0001c0001t0001g0099 a0001c0001t0002g0055 a0001c0002t0007g0112 a0001c0004t0002g0076 a0002c0017t0008g0067	5	116	0.0431	18	c.-14 others(39): Show c.-144-44875_-144-44874insTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340685	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0053 a0001c0001t0008g0053	1	116	0.0086	18	c.-89 others(35): Show c.-89+1461_-89+1478dupTATATATATATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TAGAGAGA others(11): Show TAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0096 a0001c0005t0001g0096	1	116	0.0086	18	c.-89 others(35): Show c.-89+1490_-89+1507dupAGAGAGAGAGAGAGAGAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar

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